[mmdb] 03/08: Merge tag 'upstream/2.0.1'
Frédéric-Emmanuel Picca
picca at moszumanska.debian.org
Wed Dec 31 09:32:45 UTC 2014
This is an automated email from the git hooks/post-receive script.
picca pushed a commit to branch master
in repository mmdb.
commit 47aec56c74bb99923c45fa79bd86a68e8f5422be
Merge: 63625d7 f3af8fb
Author: Picca Frédéric-Emmanuel <picca at debian.org>
Date: Wed Sep 10 21:39:54 2014 +0200
Merge tag 'upstream/2.0.1'
Upstream version 2.0.1
Makefile.am | 56 +-
Makefile.in | 482 +--
README | 99 +-
aclocal.m4 | 276 +-
configure | 51 +-
configure.ac | 6 +-
mmdb/bfgs_min.cpp | 936 -----
mmdb/bfgs_min.h | 257 --
mmdb/file_.cpp | 1857 ----------
mmdb/file_.h | 302 --
mmdb/linalg_.cpp | 987 ------
mmdb/linalg_.h | 233 --
mmdb/machine_.cpp | 148 -
mmdb/math_.cpp | 199 --
mmdb/math_.h | 73 -
mmdb/mattype_.cpp | 2116 ------------
mmdb/mattype_.h | 659 ----
mmdb/mmdb_align.cpp | 1219 -------
mmdb/mmdb_align.h | 189 -
mmdb/mmdb_atom.cpp | 3495 -------------------
mmdb/mmdb_atom.h | 739 ----
mmdb/mmdb_bondmngr.cpp | 125 -
mmdb/mmdb_chain.cpp | 2568 --------------
mmdb/mmdb_chain.h | 674 ----
mmdb/mmdb_cifdefs.cpp | 122 -
mmdb/mmdb_cifdefs.h | 327 --
mmdb/mmdb_coormngr.cpp | 4360 -----------------------
mmdb/mmdb_coormngr.h | 951 -----
mmdb/mmdb_cryst.cpp | 2288 -------------
mmdb/mmdb_cryst.h | 462 ---
mmdb/mmdb_defs.h | 259 --
mmdb/mmdb_file.cpp | 3060 -----------------
mmdb/mmdb_file.h | 650 ----
mmdb/mmdb_graph.cpp | 2460 -------------
mmdb/mmdb_graph.h | 484 ---
mmdb/mmdb_manager.cpp | 392 ---
mmdb/mmdb_manager.h | 122 -
mmdb/mmdb_mask.cpp | 246 --
mmdb/mmdb_mmcif.cpp | 3671 --------------------
mmdb/mmdb_mmcif.h | 2129 ------------
mmdb/mmdb_model.cpp | 5313 ----------------------------
mmdb/mmdb_model.h | 1085 ------
mmdb/mmdb_sbase.cpp | 320 --
mmdb/mmdb_sbase.h | 142 -
mmdb/mmdb_sbase0.cpp | 3124 -----------------
mmdb/mmdb_sbase0.h | 746 ----
mmdb/mmdb_selmngr.cpp | 3393 ------------------
mmdb/mmdb_selmngr.h | 624 ----
mmdb/mmdb_symop.cpp | 1009 ------
mmdb/mmdb_symop.h | 173 -
mmdb/mmdb_tables.cpp | 750 ----
mmdb/mmdb_tables.h | 129 -
mmdb/mmdb_title.cpp | 2653 --------------
mmdb/mmdb_title.h | 734 ----
mmdb/mmdb_uddata.cpp | 537 ---
mmdb/mmdb_uddata.h | 152 -
mmdb/mmdb_utils.cpp | 1974 -----------
mmdb/mmdb_utils.h | 639 ----
mmdb/mmdb_xml.cpp | 954 ------
mmdb/mmdb_xml.h | 148 -
mmdb/random_n.cpp | 235 --
mmdb/stream_.cpp | 106 -
mmdb/stream_.h | 192 --
mmdb.pc.in => mmdb2.pc.in | 5 +-
{mmdb => mmdb2}/hybrid_36.cpp | 0
{mmdb => mmdb2}/hybrid_36.h | 0
mmdb2/mmdb_atom.cpp | 3486 +++++++++++++++++++
mmdb2/mmdb_atom.h | 732 ++++
mmdb2/mmdb_bondmngr.cpp | 121 +
{mmdb => mmdb2}/mmdb_bondmngr.h | 52 +-
mmdb2/mmdb_chain.cpp | 2575 ++++++++++++++
mmdb2/mmdb_chain.h | 662 ++++
mmdb2/mmdb_cifdefs.cpp | 369 ++
mmdb2/mmdb_cifdefs.h | 329 ++
mmdb2/mmdb_coormngr.cpp | 4347 +++++++++++++++++++++++
mmdb2/mmdb_coormngr.h | 959 ++++++
mmdb2/mmdb_cryst.cpp | 2312 +++++++++++++
mmdb2/mmdb_cryst.h | 458 +++
mmdb2/mmdb_defs.h | 271 ++
{mmdb => mmdb2}/mmdb_ficif.cpp | 81 +-
{mmdb => mmdb2}/mmdb_ficif.h | 47 +-
mmdb2/mmdb_io_file.cpp | 1873 ++++++++++
mmdb2/mmdb_io_file.h | 301 ++
mmdb2/mmdb_io_stream.cpp | 112 +
mmdb2/mmdb_io_stream.h | 193 ++
mmdb2/mmdb_machine_.cpp | 155 +
mmdb/machine_.h => mmdb2/mmdb_machine_.h | 157 +-
mmdb2/mmdb_manager.cpp | 389 +++
mmdb2/mmdb_manager.h | 124 +
mmdb2/mmdb_mask.cpp | 240 ++
{mmdb => mmdb2}/mmdb_mask.h | 76 +-
mmdb2/mmdb_math_.cpp | 203 ++
mmdb2/mmdb_math_.h | 77 +
mmdb2/mmdb_math_align.cpp | 1226 +++++++
mmdb2/mmdb_math_align.h | 195 ++
mmdb2/mmdb_math_bfgsmin.cpp | 938 +++++
mmdb2/mmdb_math_bfgsmin.h | 260 ++
mmdb2/mmdb_math_fft.cpp | 338 ++
mmdb2/mmdb_math_fft.h | 93 +
mmdb2/mmdb_math_graph.cpp | 2461 +++++++++++++
mmdb2/mmdb_math_graph.h | 494 +++
mmdb2/mmdb_math_linalg.cpp | 990 ++++++
mmdb2/mmdb_math_linalg.h | 236 ++
mmdb2/mmdb_math_rand.cpp | 241 ++
mmdb/random_n.h => mmdb2/mmdb_math_rand.h | 79 +-
mmdb2/mmdb_mattype.cpp | 2087 +++++++++++
mmdb2/mmdb_mattype.h | 652 ++++
mmdb2/mmdb_mmcif_.cpp | 3666 ++++++++++++++++++++
mmdb2/mmdb_mmcif_.h | 2146 ++++++++++++
mmdb2/mmdb_model.cpp | 5332 +++++++++++++++++++++++++++++
mmdb2/mmdb_model.h | 1073 ++++++
mmdb2/mmdb_root.cpp | 3054 +++++++++++++++++
mmdb2/mmdb_root.h | 639 ++++
{mmdb => mmdb2}/mmdb_rwbrook.cpp | 1762 +++++-----
{mmdb => mmdb2}/mmdb_rwbrook.h | 591 ++--
mmdb2/mmdb_selmngr.cpp | 3421 ++++++++++++++++++
mmdb2/mmdb_selmngr.h | 634 ++++
mmdb2/mmdb_seqsuperpose.cpp | 366 ++
mmdb2/mmdb_seqsuperpose.h | 134 +
mmdb2/mmdb_symop.cpp | 1001 ++++++
mmdb2/mmdb_symop.h | 168 +
mmdb2/mmdb_tables.cpp | 748 ++++
mmdb2/mmdb_tables.h | 127 +
mmdb2/mmdb_title.cpp | 2662 ++++++++++++++
mmdb2/mmdb_title.h | 696 ++++
mmdb2/mmdb_uddata.cpp | 534 +++
mmdb2/mmdb_uddata.h | 154 +
mmdb2/mmdb_utils.cpp | 1994 +++++++++++
mmdb2/mmdb_utils.h | 633 ++++
mmdb2/mmdb_xml_.cpp | 986 ++++++
mmdb2/mmdb_xml_.h | 162 +
131 files changed, 62814 insertions(+), 65726 deletions(-)
--
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