[clipper] branch master updated (c588033 -> 02f4968)

[Frédéric-Emmanuel Picca]

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picca pushed a change to branch master
in repository clipper.

      from  c588033   move the examples into the -doc package (Closes: #756143)
       new  47e9d41   Imported Upstream version 2.1.20140911
       new  b90f61f   Merge tag 'upstream/2.1.20140911'
       new  d87cbe7   update the changelog for the new version
       new  fe4f927   fix the build dependency
       new  02f4968   bump Standards-Version 3.9.6

The 5 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
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Summary of changes:
 Makefile.in                              |  236 ++--
 aclocal.m4                               |  276 +++--
 build-aux/ar-lib                         |    2 +-
 build-aux/config.guess                   |  619 +++++-----
 build-aux/config.sub                     |  290 +++--
 build-aux/depcomp                        |  531 ++++++---
 build-aux/install-sh                     |   35 +-
 build-aux/missing                        |  461 +++-----
 clipper.pc.in                            |    2 +-
 clipper/Makefile.am                      |   24 +-
 clipper/Makefile.in                      |  345 +++---
 clipper/cif/cif_data_io.cpp              |  123 +-
 clipper/clipper-mmdbold.h                |    9 -
 clipper/contrib/Makefile.in              |  157 ++-
 clipper/core/Makefile.am                 |    4 +-
 clipper/core/Makefile.in                 |  161 +--
 clipper/core/clipper_sysdep.h            |   10 +-
 clipper/core/ramachandran.cpp            | 1831 ++++++++++++++++++++++++++++++
 clipper/core/ramachandran.h              |    2 +-
 clipper/core/spacegroup.cpp              |    2 +-
 clipper/minimol/minimol_io.cpp           |   34 +-
 clipper/mmdb/clipper_mmdb.cpp            |   66 +-
 clipper/mmdb/clipper_mmdb.h              |   36 +-
 clipper/mmdbold/clipper_mmdb.cpp         |  888 ---------------
 clipper/mmdbold/clipper_mmdb.h           |  519 ---------
 clipper/mmdbold/clipper_mmdb_types.cpp   |  171 ---
 clipper/mmdbold/clipper_mmdb_types.h     |  272 -----
 clipper/mmdbold/clipper_mmdb_wrapper.cpp |  103 --
 clipper/mmdbold/clipper_mmdb_wrapper.h   |  110 --
 clipper/mmdbold/container_mmdb.cpp       |   95 --
 clipper/mmdbold/container_mmdb.h         |   74 --
 configure                                | 1207 ++++++++++----------
 configure.ac                             |   25 +-
 debian/changelog                         |    7 +
 debian/control                           |    4 +-
 examples/Makefile.am                     |    2 +-
 examples/Makefile.in                     |  153 ++-
 examples/maketestdata.cpp                |    2 +-
 examples/sftest.cpp                      |    2 +-
 m4/fftw.m4                               |   20 +-
 40 files changed, 4343 insertions(+), 4567 deletions(-)
 delete mode 100644 clipper/clipper-mmdbold.h
 delete mode 100644 clipper/mmdbold/clipper_mmdb.cpp
 delete mode 100644 clipper/mmdbold/clipper_mmdb.h
 delete mode 100644 clipper/mmdbold/clipper_mmdb_types.cpp
 delete mode 100644 clipper/mmdbold/clipper_mmdb_types.h
 delete mode 100644 clipper/mmdbold/clipper_mmdb_wrapper.cpp
 delete mode 100644 clipper/mmdbold/clipper_mmdb_wrapper.h
 delete mode 100644 clipper/mmdbold/container_mmdb.cpp
 delete mode 100644 clipper/mmdbold/container_mmdb.h

-- 
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