[ssm] 04/04: release
Frédéric-Emmanuel Picca
picca at moszumanska.debian.org
Wed Dec 31 12:01:25 UTC 2014
This is an automated email from the git hooks/post-receive script.
picca pushed a commit to branch master
in repository ssm.
commit 1ce4adf8cfe47c504c709f3a3e6109ec055ca19a
Author: Picca Frédéric-Emmanuel <picca at debian.org>
Date: Wed Dec 31 13:00:39 2014 +0100
release
---
debian/changelog | 6 +-
debian/control | 17 ++
debian/libssm-bin.install | 1 +
debian/libssm0.symbols | 338 -----------------------------------
debian/libssm1.symbols | 447 ----------------------------------------------
debian/rules | 2 +-
6 files changed, 24 insertions(+), 787 deletions(-)
diff --git a/debian/changelog b/debian/changelog
index fa654a7..19a1ab2 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,4 +1,4 @@
-ssm (1.4-1) UNRELEASED; urgency=medium
+ssm (1.4-1~exp1) experimental; urgency=medium
[Andreas Tille]
* Add proper citation record in debian/upstream/metadata and remove
@@ -6,6 +6,10 @@ ssm (1.4-1) UNRELEASED; urgency=medium
[Picca Frederic-Emmanuel]
* update the watch file
+ * debian/control
+ - Bump Standards-Version 3.9.6 (nothing to do)
+ - Bump ssm so number libssm1 -> libssm2
+ - Added the libssm-bin package with the superpose binary
-- Picca Frédéric-Emmanuel <picca at debian.org> Wed, 31 Dec 2014 2:01:40 +0100
diff --git a/debian/control b/debian/control
index e09ffa4..6fea820 100644
--- a/debian/control
+++ b/debian/control
@@ -5,6 +5,7 @@ Section: science
Priority: extra
Build-Depends: debhelper (>= 9),
dh-autoreconf,
+ libccp4-dev,
libmmdb2-dev
Standards-Version: 3.9.6
Vcs-Browser: http://anonscm.debian.org/gitweb/?p=debian-science/packages/ssm.git
@@ -32,6 +33,22 @@ Description: macromolecular superposition library - development files
This package contains libraries and header files needed for program
development.
+Package: libssm-bin
+Architecture: any
+Depends: ${misc:Depends},
+ ${shlibs:Depends}
+Description: macromolecular superposition library - binaries
+ SSM is a macromolecular coordinate superposition library, written by
+ Eugene Krissinel of the EBI.
+ .
+ The library implements the SSM algorithm of protein structure
+ comparison in three dimensions, which includes an original procedure
+ of matching graphs built on the protein's secondary-structure
+ elements, followed by an iterative three-dimensional alignment of
+ protein backbone Calpha atoms.
+ .
+ This package contains the binaries of the libraries
+
Package: libssm2
Architecture: any
Multi-Arch: same
diff --git a/debian/libssm-bin.install b/debian/libssm-bin.install
new file mode 100644
index 0000000..415f082
--- /dev/null
+++ b/debian/libssm-bin.install
@@ -0,0 +1 @@
+/usr/bin
diff --git a/debian/libssm0.symbols b/debian/libssm0.symbols
deleted file mode 100644
index f4387f7..0000000
--- a/debian/libssm0.symbols
+++ /dev/null
@@ -1,338 +0,0 @@
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- sd_nres_atol at Base 0.1
- sd_nres_rtol at Base 0.1
- tn_uncert_max at Base 0.1
- tn_uncert_min at Base 0.1
- vv_uncert_max at Base 0.1
- vv_uncert_min at Base 0.1
diff --git a/debian/libssm1.symbols b/debian/libssm1.symbols
deleted file mode 100644
index 18f2f3a..0000000
--- a/debian/libssm1.symbols
+++ /dev/null
@@ -1,447 +0,0 @@
-libssm.so.1 libssm1 #MINVER#
- _Z10CompareIntiiPc at Base 1.3
- _Z10CompareStrPcS_S_ at Base 1.3
- _Z11CompareRealddPc at Base 1.3
- _Z11betterMatchidid at Base 1.3
- _Z14GetVectorScorePdS_S_S_ at Base 1.3
- _Z8MinTFuncPviPdRd at Base 1.3
- _ZN3ssm10GetSSGraphEP12CMMDBManageriRi at Base 1.3
- _ZN3ssm10GraphMatch10Backtrack1Eii at Base 1.3
- _ZN3ssm10GraphMatch10FreeMemoryEv at Base 1.3
- _ZN3ssm10GraphMatch10GetMatchesERPPNS_5MatchERi at Base 1.3
- _ZN3ssm10GraphMatch10GetRecHeapEv at Base 1.3
- _ZN3ssm10GraphMatch10InitializeEv at Base 1.3
- _ZN3ssm10GraphMatch11FreeRecHeapEv at Base 1.3
- _ZN3ssm10GraphMatch11MatchGraphsEPNS_5GraphES2_i at Base 1.3
- _ZN3ssm10GraphMatch11RemoveFlagsEj at Base 1.3
- _ZN3ssm10GraphMatch12CollectMatchEi at Base 1.3
- _ZN3ssm10GraphMatch12SetBestMatchEh at Base 1.3
- _ZN3ssm10GraphMatch13GetNofMatchesEdd at Base 1.3
- _ZN3ssm10GraphMatch14InitGraphMatchEv at Base 1.3
- _ZN3ssm10GraphMatch14SetUniqueMatchEh at Base 1.3
- _ZN3ssm10GraphMatch17CheckConnectivityEi at Base 1.3
- _ZN3ssm10GraphMatch17MatchSingleVertexEv at Base 1.3
- _ZN3ssm10GraphMatch20SetMatchBufferLengthEi at Base 1.3
- _ZN3ssm10GraphMatch4readER5CFile at Base 1.3
- _ZN3ssm10GraphMatch5writeER5CFile at Base 1.3
- _ZN3ssm10GraphMatch7DoMatchEi at Base 1.3
- _ZN3ssm10GraphMatch8GetMatchEiRiRPiS3_RdS4_ at Base 1.3
- _ZN3ssm10GraphMatch8SetFlagsEj at Base 1.3
- _ZN3ssm10GraphMatch9BacktrackEi at Base 1.3
- _ZN3ssm10GraphMatch9GetGraph1Ev at Base 1.3
- _ZN3ssm10GraphMatch9GetGraph2Ev at Base 1.3
- _ZN3ssm10GraphMatch9GetMemoryEv at Base 1.3
- _ZN3ssm10GraphMatchC1ERP7CStream at Base 1.3
- _ZN3ssm10GraphMatchC1Ev at Base 1.3
- _ZN3ssm10GraphMatchC2ERP7CStream at Base 1.3
- _ZN3ssm10GraphMatchC2Ev at Base 1.3
- _ZN3ssm10GraphMatchD0Ev at Base 1.3
- _ZN3ssm10GraphMatchD1Ev at Base 1.3
- _ZN3ssm10GraphMatchD2Ev at Base 1.3
- _ZN3ssm10MSSEOutput11SetSSERangeEPNS_6VertexE at Base 1.3
- _ZN3ssm10MSSEOutput4CopyERS0_ at Base 1.3
- _ZN3ssm10MSSEOutput4InitEv at Base 1.3
- _ZN3ssm10MSSEOutput4readER5CFile at Base 1.3
- _ZN3ssm10MSSEOutput5writeER5CFile at Base 1.3
- _ZN3ssm10StreamReadER5CFileRPNS_10GraphMatchE at Base 1.3
- _ZN3ssm10StreamReadER5CFileRPNS_4EdgeE at Base 1.3
- _ZN3ssm10StreamReadER5CFileRPNS_5AlignE at Base 1.3
- _ZN3ssm10StreamReadER5CFileRPNS_5GraphE at Base 1.3
- _ZN3ssm10StreamReadER5CFileRPNS_5MatchE at Base 1.3
- _ZN3ssm10StreamReadER5CFileRPNS_6VertexE at Base 1.3
- _ZN3ssm10StreamReadER5CFileRPNS_9MultAlignE at Base 1.3
- _ZN3ssm10XAlignText10customFreeEv at Base 1.3
- _ZN3ssm10XAlignText10customInitEv at Base 1.3
- _ZN3ssm10XAlignText12WipeTextRowsEv at Base 1.3
- _ZN3ssm10XAlignText13GetAlignmentsERPcS2_ at Base 1.3
- _ZN3ssm10XAlignText7makeRowEP5CAtomiS2_idiih at Base 1.3
- _ZN3ssm10XAlignTextC1Ev at Base 1.3
- _ZN3ssm10XAlignTextC2Ev at Base 1.3
- _ZN3ssm10XAlignTextD0Ev at Base 1.3
- _ZN3ssm10XAlignTextD1Ev at Base 1.3
- _ZN3ssm10XAlignTextD2Ev at Base 1.3
- _ZN3ssm10hx_min_lenE at Base 1.3
- _ZN3ssm10sd_min_lenE at Base 1.3
- _ZN3ssm11ExpandMAOutERPPNS_8MAOutputEiiRi at Base 1.3
- _ZN3ssm11SectionDist4CopyERS0_ at Base 1.3
- _ZN3ssm11StreamWriteER5CFileRPNS_10GraphMatchE at Base 1.3
- _ZN3ssm11StreamWriteER5CFileRPNS_4EdgeE at Base 1.3
- _ZN3ssm11StreamWriteER5CFileRPNS_5AlignE at Base 1.3
- _ZN3ssm11StreamWriteER5CFileRPNS_5GraphE at Base 1.3
- _ZN3ssm11StreamWriteER5CFileRPNS_5MatchE at Base 1.3
- _ZN3ssm11StreamWriteER5CFileRPNS_6VertexE at Base 1.3
- _ZN3ssm11StreamWriteER5CFileRPNS_9MultAlignE at Base 1.3
- _ZN3ssm11length_atolE at Base 1.3
- _ZN3ssm11length_rtolE at Base 1.3
- _ZN3ssm12CutOutDomainEP12CMMDBManagerPKc at Base 1.3
- _ZN3ssm12ExpandSSEOutERPPNS_10MSSEOutputEiiRi at Base 1.3
- _ZN3ssm12FreeMSOutputERPPNS_10MSSEOutputERi at Base 1.3
- _ZN3ssm12FreeMSOutputERPPNS_8MAOutputERi at Base 1.3
- _ZN3ssm12SelectDomainEP12CMMDBManagerRiPKci at Base 1.3
- _ZN3ssm12SortMappings4SortEPiiPNS_5MAMapE at Base 1.3
- _ZN3ssm12SortMappings7CompareEii at Base 1.3
- _ZN3ssm12SortMappingsD0Ev at Base 1.3
- _ZN3ssm12SortMappingsD1Ev at Base 1.3
- _ZN3ssm12SortMappingsD2Ev at Base 1.3
- _ZN3ssm12hx_nres_atolE at Base 1.3
- _ZN3ssm12hx_nres_rtolE at Base 1.3
- _ZN3ssm12sd_nres_atolE at Base 1.3
- _ZN3ssm12sd_nres_rtolE at Base 1.3
- _ZN3ssm13DisposeGraphsERPPNS_5GraphERi at Base 1.3
- _ZN3ssm13SuperposeData13SelectCalphasEv at Base 1.3
- _ZN3ssm13SuperposeData15DeselectCalphasEv at Base 1.3
- _ZN3ssm13SuperposeData4InitEv at Base 1.3
- _ZN3ssm13SuperposeData7DisposeEv at Base 1.3
- _ZN3ssm13ev_uncert_maxE at Base 1.3
- _ZN3ssm13ev_uncert_minE at Base 1.3
- _ZN3ssm13tn_uncert_maxE at Base 1.3
- _ZN3ssm13tn_uncert_minE at Base 1.3
- _ZN3ssm13vv_uncert_maxE at Base 1.3
- _ZN3ssm13vv_uncert_minE at Base 1.3
- _ZN3ssm14StreamInitEdgeERP7CStream at Base 1.3
- _ZN3ssm15PrintAlignTableER5CFileP12CMMDBManagerS3_PNS_5AlignE at Base 1.3
- _ZN3ssm15StreamInitAlignERP7CStream at Base 1.3
- _ZN3ssm15StreamInitGraphERP7CStream at Base 1.3
- _ZN3ssm15StreamInitMatchERP7CStream at Base 1.3
- _ZN3ssm15SuperposeGraphsEPNS_5GraphEPiS1_S2_iRA4_A4_d at Base 1.3
- _ZN3ssm16CalcCombinationsERPdRiPNS_5GraphES4_ at Base 1.3
- _ZN3ssm16StreamInitVertexERP7CStream at Base 1.3
- _ZN3ssm17SetMatchPrecisionENS_9PRECISIONE at Base 1.3
- _ZN3ssm19CheckSSConnectivityE at Base 1.3
- _ZN3ssm19StreamInitMultAlignERP7CStream at Base 1.3
- _ZN3ssm19readMatchParametersEPc at Base 1.3
- _ZN3ssm20SetConnectivityCheckENS_12CONNECTIVITYE at Base 1.3
- _ZN3ssm20StreamInitGraphMatchERP7CStream at Base 1.3
- _ZN3ssm20writeMatchParametersEPc at Base 1.3
- _ZN3ssm4Edge12GetDirectionERA3_d at Base 1.3
- _ZN3ssm4Edge17CheckConnectivityEhPS0_h at Base 1.3
- _ZN3ssm4Edge4readER5CFile at Base 1.3
- _ZN3ssm4Edge5writeER5CFile at Base 1.3
- _ZN3ssm4Edge7CompareEhPS0_h at Base 1.3
- _ZN3ssm4Edge7SetEdgeEPNS_6VertexES2_ at Base 1.3
- _ZN3ssm4Edge8GetAngleEPNS_6VertexE at Base 1.3
- _ZN3ssm4Edge8GetAngleEPdS1_ at Base 1.3
- _ZN3ssm4Edge8InitEdgeEv at Base 1.3
- _ZN3ssm4Edge9GetCosineEPS0_ at Base 1.3
- _ZN3ssm4EdgeC1ERP7CStream at Base 1.3
- _ZN3ssm4EdgeC1Ev at Base 1.3
- _ZN3ssm4EdgeC2ERP7CStream at Base 1.3
- _ZN3ssm4EdgeC2Ev at Base 1.3
- _ZN3ssm4EdgeD0Ev at Base 1.3
- _ZN3ssm4EdgeD1Ev at Base 1.3
- _ZN3ssm4EdgeD2Ev at Base 1.3
- _ZN3ssm5Align10FreeMemoryEv at Base 1.3
- _ZN3ssm5Align13MapSelectionsERiP12CMMDBManagerPNS_5GraphEiRPi at Base 1.3
- _ZN3ssm5Align14MakeSelectionsEP12CMMDBManageriS2_i at Base 1.3
- _ZN3ssm5Align18AlignSelectedMatchEP12CMMDBManagerS2_NS_9PRECISIONENS_12CONNECTIVITYEiii at Base 1.3
- _ZN3ssm5Align4readER5CFile at Base 1.3
- _ZN3ssm5Align5alignEP12CMMDBManagerS2_NS_9PRECISIONENS_12CONNECTIVITYEii at Base 1.3
- _ZN3ssm5Align5writeER5CFile at Base 1.3
- _ZN3ssm5Align9InitAlignEv at Base 1.3
- _ZN3ssm5AlignC1ERP7CStream at Base 1.3
- _ZN3ssm5AlignC1Ev at Base 1.3
- _ZN3ssm5AlignC2ERP7CStream at Base 1.3
- _ZN3ssm5AlignC2Ev at Base 1.3
- _ZN3ssm5AlignD0Ev at Base 1.3
- _ZN3ssm5AlignD1Ev at Base 1.3
- _ZN3ssm5AlignD2Ev at Base 1.3
- _ZN3ssm5Graph10BuildGraphEv at Base 1.3
- _ZN3ssm5Graph10FreeMemoryEv at Base 1.3
- _ZN3ssm5Graph10GetSSETypeEP5CAtom at Base 1.3
- _ZN3ssm5Graph10GetSSETypeEPci at Base 1.3
- _ZN3ssm5Graph10calcVTypesEv at Base 1.3
- _ZN3ssm5Graph12CompareEdgesEiiPS0_ii at Base 1.3
- _ZN3ssm5Graph12GetAllChainsERPA10_cRi at Base 1.3
- _ZN3ssm5Graph12GetChainListEPc at Base 1.3
- _ZN3ssm5Graph12GetGraphEdgeEi at Base 1.3
- _ZN3ssm5Graph12GetGraphEdgeEii at Base 1.3
- _ZN3ssm5Graph12GetNofChainsEv at Base 1.3
- _ZN3ssm5Graph12GetSeqLengthEi at Base 1.3
- _ZN3ssm5Graph12ReleaseEdgesEv at Base 1.3
- _ZN3ssm5Graph12RemoveVertexEi at Base 1.3
- _ZN3ssm5Graph12SetGraphNameEPKc at Base 1.3
- _ZN3ssm5Graph13GetVertexTypeEi at Base 1.3
- _ZN3ssm5Graph13LeaveVerticesEPKcP12CMMDBManager at Base 1.3
- _ZN3ssm5Graph13LeaveVerticesEPii at Base 1.3
- _ZN3ssm5Graph13LeaveVerticesEiP12CMMDBManager at Base 1.3
- _ZN3ssm5Graph13SelectCalphasEP12CMMDBManagerRiPKc at Base 1.3
- _ZN3ssm5Graph14GetGraphVertexEi at Base 1.3
- _ZN3ssm5Graph14GetVertexClassEi at Base 1.3
- _ZN3ssm5Graph14GetVertexRangeEiPcRiS1_S2_S1_ at Base 1.3
- _ZN3ssm5Graph14GetVertexRangeEiPcRiS2_ at Base 1.3
- _ZN3ssm5Graph14_leaveVerticesEP12CMMDBManageri at Base 1.3
- _ZN3ssm5Graph15CalcVertexOrderEv at Base 1.3
- _ZN3ssm5Graph15GetVertexEndResEi at Base 1.3
- _ZN3ssm5Graph16CalcCombinationsEPii at Base 1.3
- _ZN3ssm5Graph16GetEdgeDirectionEiiRA3_d at Base 1.3
- _ZN3ssm5Graph16GetVertexChainIDEi at Base 1.3
- _ZN3ssm5Graph16GetVertexInitResEi at Base 1.3
- _ZN3ssm5Graph18DevelopChainGraphsERPPS0_Ri at Base 1.3
- _ZN3ssm5Graph18GetVertexDirectionEiRA3_d at Base 1.3
- _ZN3ssm5Graph19RemoveShortVerticesEii at Base 1.3
- _ZN3ssm5Graph21CheckEdgeConnectivityEiiPS0_ii at Base 1.3
- _ZN3ssm5Graph4CopyEPS0_ at Base 1.3
- _ZN3ssm5Graph4readER5CFile at Base 1.3
- _ZN3ssm5Graph5ResetEv at Base 1.3
- _ZN3ssm5Graph5writeER5CFile at Base 1.3
- _ZN3ssm5Graph7GetMassEi at Base 1.3
- _ZN3ssm5Graph7inRangeEPKcii at Base 1.3
- _ZN3ssm5Graph7isBuildEv at Base 1.3
- _ZN3ssm5Graph8RepairSSEP12CMMDBManager at Base 1.3
- _ZN3ssm5Graph9AddVertexEPNS_6VertexE at Base 1.3
- _ZN3ssm5Graph9InitGraphEv at Base 1.3
- _ZN3ssm5Graph9MakeGraphEP12CMMDBManager at Base 1.3
- _ZN3ssm5Graph9SuperposeEPS0_PiS2_iRA4_A4_d at Base 1.3
- _ZN3ssm5GraphC1ERP7CStream at Base 1.3
- _ZN3ssm5GraphC1Ev at Base 1.3
- _ZN3ssm5GraphC2ERP7CStream at Base 1.3
- _ZN3ssm5GraphC2Ev at Base 1.3
- _ZN3ssm5GraphD0Ev at Base 1.3
- _ZN3ssm5GraphD1Ev at Base 1.3
- _ZN3ssm5GraphD2Ev at Base 1.3
- _ZN3ssm5MAMap4InitEi at Base 1.3
- _ZN3ssm5MAMap7DisposeEv at Base 1.3
- _ZN3ssm5Match10isSubMatchEPiS1_i at Base 1.3
- _ZN3ssm5Match4SwapEv at Base 1.3
- _ZN3ssm5Match4readER5CFile at Base 1.3
- _ZN3ssm5Match5writeER5CFile at Base 1.3
- _ZN3ssm5Match7isMatchEPiS1_i at Base 1.3
- _ZN3ssm5Match8GetMatchERPiS2_Ri at Base 1.3
- _ZN3ssm5Match8GetMatchERPiS2_RiRdS4_ at Base 1.3
- _ZN3ssm5Match8SetMatchEPiS1_iii at Base 1.3
- _ZN3ssm5Match9InitMatchEv at Base 1.3
- _ZN3ssm5MatchC1EPiS1_iii at Base 1.3
- _ZN3ssm5MatchC1ERP7CStream at Base 1.3
- _ZN3ssm5MatchC1Ev at Base 1.3
- _ZN3ssm5MatchC2EPiS1_iii at Base 1.3
- _ZN3ssm5MatchC2ERP7CStream at Base 1.3
- _ZN3ssm5MatchC2Ev at Base 1.3
- _ZN3ssm5MatchD0Ev at Base 1.3
- _ZN3ssm5MatchD1Ev at Base 1.3
- _ZN3ssm5MatchD2Ev at Base 1.3
- _ZN3ssm6SpAtom13CompatibleSSEERS0_ at Base 1.3
- _ZN3ssm6Vertex10FreeMemoryEv at Base 1.3
- _ZN3ssm6Vertex10InitVertexEv at Base 1.3
- _ZN3ssm6Vertex11GetPositionERA3_d at Base 1.3
- _ZN3ssm6Vertex11GetPositionERdS1_S1_ at Base 1.3
- _ZN3ssm6Vertex12CalcGeometryEPP5CAtom at Base 1.3
- _ZN3ssm6Vertex12GetDirectionERA3_d at Base 1.3
- _ZN3ssm6Vertex12GetPositionsEP12CMMDBManageri at Base 1.3
- _ZN3ssm6Vertex14GetVertexRangeEPcS1_RiS1_S1_S2_S1_ at Base 1.3
- _ZN3ssm6Vertex17GetFullVertexDescEPc at Base 1.3
- _ZN3ssm6Vertex18GetLengthDeviationEPS0_ at Base 1.3
- _ZN3ssm6Vertex18GetShortVertexDescEPc at Base 1.3
- _ZN3ssm6Vertex4CopyEPS0_ at Base 1.3
- _ZN3ssm6Vertex4readER5CFile at Base 1.3
- _ZN3ssm6Vertex5writeER5CFile at Base 1.3
- _ZN3ssm6Vertex7CompareEPS0_ at Base 1.3
- _ZN3ssm6Vertex7inRangeEPKcii at Base 1.3
- _ZN3ssm6Vertex8GetAngleEPS0_ at Base 1.3
- _ZN3ssm6Vertex8GetAngleEddd at Base 1.3
- _ZN3ssm6Vertex8GetCoor1EPP5CAtomi at Base 1.3
- _ZN3ssm6Vertex8GetCoor2EPP5CAtomi at Base 1.3
- _ZN3ssm6Vertex9GetCosineEPS0_ at Base 1.3
- _ZN3ssm6Vertex9SetVertexEP12CMMDBManagerNS_11VERTEX_TYPEEiiPciS4_iS4_ at Base 1.3
- _ZN3ssm6Vertex9SetVertexEP12CMMDBManagerP6CHelix at Base 1.3
- _ZN3ssm6Vertex9SetVertexEP12CMMDBManagerP7CStrand at Base 1.3
- _ZN3ssm6VertexC1ERP7CStream at Base 1.3
- _ZN3ssm6VertexC1Ev at Base 1.3
- _ZN3ssm6VertexC2ERP7CStream at Base 1.3
- _ZN3ssm6VertexC2Ev at Base 1.3
- _ZN3ssm6VertexD0Ev at Base 1.3
- _ZN3ssm6VertexD1Ev at Base 1.3
- _ZN3ssm6VertexD2Ev at Base 1.3
- _ZN3ssm6XAlign10FreeMemoryEv at Base 1.3
- _ZN3ssm6XAlign10customInitEv at Base 1.3
- _ZN3ssm6XAlign11makeXBlocksEPiiRPNS_6XBlockERi at Base 1.3
- _ZN3ssm6XAlign12alignXBlocksERNS_6XBlockES2_Ri at Base 1.3
- _ZN3ssm6XAlign5alignEPNS_5GraphEPP5CAtomPiiS2_S5_S6_iPdRi at Base 1.3
- _ZN3ssm6XAlign7makeRowEP5CAtomiS2_idiih at Base 1.3
- _ZN3ssm6XAlignC1Ev at Base 1.3
- _ZN3ssm6XAlignC2Ev at Base 1.3
- _ZN3ssm6XAlignD0Ev at Base 1.3
- _ZN3ssm6XAlignD1Ev at Base 1.3
- _ZN3ssm6XAlignD2Ev at Base 1.3
- _ZN3ssm7PAMatch10FreeMemoryEv at Base 1.3
- _ZN3ssm7PAMatch3SetEPiS1_idPd at Base 1.3
- _ZN3ssm7PAMatch8GetMatchEPiS1_iRdPd at Base 1.3
- _ZN3ssm7PAMatchC1Ev at Base 1.3
- _ZN3ssm7PAMatchC2Ev at Base 1.3
- _ZN3ssm7PAMatchD1Ev at Base 1.3
- _ZN3ssm7PAMatchD2Ev at Base 1.3
- _ZN3ssm7SSEDesc4CopyERS0_ at Base 1.3
- _ZN3ssm7SSEDesc6CosineERS0_ at Base 1.3
- _ZN3ssm7SSEDesc9CalcScoreERS0_ at Base 1.3
- _ZN3ssm7SSEDesc9TransformERA4_A4_d at Base 1.3
- _ZN3ssm7XTAlign5PrintER5CFile at Base 1.3
- _ZN3ssm8MAOutput4CopyERS0_ at Base 1.3
- _ZN3ssm8MAOutput4FillEP5CAtomPNS_5GraphEh at Base 1.3
- _ZN3ssm8MAOutput4InitEv at Base 1.3
- _ZN3ssm8MAOutput4readER5CFile at Base 1.3
- _ZN3ssm8MAOutput5writeER5CFile at Base 1.3
- _ZN3ssm8MAStruct12GetDirectionEiRA3_d at Base 1.3
- _ZN3ssm8MAStruct15CalcTranslationEv at Base 1.3
- _ZN3ssm8MAStruct15SaveCoordinatesEv at Base 1.3
- _ZN3ssm8MAStruct18PrepareSSEMatchingEv at Base 1.3
- _ZN3ssm8MAStruct18RestoreCoordinatesEv at Base 1.3
- _ZN3ssm8MAStruct21CalcCorrelationMatrixERPPdS1_S1_S1_ at Base 1.3
- _ZN3ssm8MAStruct3SetEP12CMMDBManagerPNS_5GraphEii at Base 1.3
- _ZN3ssm8MAStruct4InitEP12CMMDBManagerPNS_5GraphEii at Base 1.3
- _ZN3ssm8MAStruct4isMCEiPS0_i at Base 1.3
- _ZN3ssm8MAStruct6RefineEidPiS1_ at Base 1.3
- _ZN3ssm8MAStruct7DisposeEv at Base 1.3
- _ZN3ssm8MAStruct9TransformEv at Base 1.3
- _ZN3ssm8SortDist4SortEPNS_12SortDistDataEi at Base 1.3
- _ZN3ssm8SortDist4SwapEii at Base 1.3
- _ZN3ssm8SortDist7CompareEii at Base 1.3
- _ZN3ssm8SortDistD0Ev at Base 1.3
- _ZN3ssm8SortDistD1Ev at Base 1.3
- _ZN3ssm8SortDistD2Ev at Base 1.3
- _ZN3ssm9InitGraphEv at Base 1.3
- _ZN3ssm9MultAlign10FreeMemoryEv at Base 1.3
- _ZN3ssm9MultAlign10getTMatrixERA4_A4_di at Base 1.3
- _ZN3ssm9MultAlign10printStatsEv at Base 1.3
- _ZN3ssm9MultAlign11AllocateMapEv at Base 1.3
- _ZN3ssm9MultAlign11GetMAOutputERPPNS_8MAOutputERiS5_ at Base 1.3
- _ZN3ssm9MultAlign12AlignCalphasEv at Base 1.3
- _ZN3ssm9MultAlign12CalcRotationERA4_A4_d at Base 1.3
- _ZN3ssm9MultAlign12GetBestMatchEPNS_8MAStructES2_ at Base 1.3
- _ZN3ssm9MultAlign12MatchQualityEiiid at Base 1.3
- _ZN3ssm9MultAlign12RefineGraphsEv at Base 1.3
- _ZN3ssm9MultAlign12getAlignmentEiRPiRi at Base 1.3
- _ZN3ssm9MultAlign13CalcConsensusEv at Base 1.3
- _ZN3ssm9MultAlign13GetMSSEOutputERPPNS_10MSSEOutputERiS5_ at Base 1.3
- _ZN3ssm9MultAlign13InitMultAlignEv at Base 1.3
- _ZN3ssm9MultAlign13MatchQuality2Eid at Base 1.3
- _ZN3ssm9MultAlign13SelectCalphasEv at Base 1.3
- _ZN3ssm9MultAlign14MakeFirstGuessEv at Base 1.3
- _ZN3ssm9MultAlign14SortStructuresEv at Base 1.3
- _ZN3ssm9MultAlign14WriteMultAlignER5CFile at Base 1.3
- _ZN3ssm9MultAlign14getAlignScoresERiS1_RdS2_ at Base 1.3
- _ZN3ssm9MultAlign15DeletePAMatchesEv at Base 1.3
- _ZN3ssm9MultAlign15DeselectCalphasEv at Base 1.3
- _ZN3ssm9MultAlign15EvaluateMappingEP9CMContact at Base 1.3
- _ZN3ssm9MultAlign15WriteSuperposedEPKc at Base 1.3
- _ZN3ssm9MultAlign16DeleteStructuresEv at Base 1.3
- _ZN3ssm9MultAlign16WriteMatchedSSEsER5CFileh at Base 1.3
- _ZN3ssm9MultAlign18CorrespondContactsEd at Base 1.3
- _ZN3ssm9MultAlign18OptimizeAlignmentsEv at Base 1.3
- _ZN3ssm9MultAlign18getConsensusScoresERPdS2_S2_RiRPS1_S5_S5_ at Base 1.3
- _ZN3ssm9MultAlign19CalcConsensusScoresEv at Base 1.3
- _ZN3ssm9MultAlign19GetSSEMatchingStatsEv at Base 1.3
- _ZN3ssm9MultAlign19setProgressFunctionEPvPFvS1_iiE at Base 1.3
- _ZN3ssm9MultAlign4readER5CFile at Base 1.3
- _ZN3ssm9MultAlign5alignEPP12CMMDBManagerPPcPPNS_5GraphEi at Base 1.3
- _ZN3ssm9MultAlign5writeER5CFile at Base 1.3
- _ZN3ssm9MultAlign7getNresEi at Base 1.3
- _ZN3ssm9MultAlign8CalcRMSDEi at Base 1.3
- _ZN3ssm9MultAlign9AlignSSEsEv at Base 1.3
- _ZN3ssm9MultAlign9DeleteMapEv at Base 1.3
- _ZN3ssm9MultAlignC1ERP7CStream at Base 1.3
- _ZN3ssm9MultAlignC1Ev at Base 1.3
- _ZN3ssm9MultAlignC2ERP7CStream at Base 1.3
- _ZN3ssm9MultAlignC2Ev at Base 1.3
- _ZN3ssm9MultAlignD0Ev at Base 1.3
- _ZN3ssm9MultAlignD1Ev at Base 1.3
- _ZN3ssm9MultAlignD2Ev at Base 1.3
- _ZN3ssm9PAMatches12GetBestMatchERPiS2_Ri at Base 1.3
- _ZN3ssm9PAMatches12SetBestMatchEi at Base 1.3
- _ZN3ssm9PAMatches13GetBestQscoreEv at Base 1.3
- _ZN3ssm9PAMatches8AddMatchEPiS1_idPd at Base 1.3
- _ZN3ssm9PAMatches8GetMatchEPiS1_iRdPd at Base 1.3
- _ZN3ssm9PAMatchesC1Ev at Base 1.3
- _ZN3ssm9PAMatchesC2Ev at Base 1.3
- _ZN3ssm9PAMatchesD1Ev at Base 1.3
- _ZN3ssm9PAMatchesD2Ev at Base 1.3
- _ZN3ssm9PrintAtomER5CFileidPcS2_iS2_ at Base 1.3
- _ZN3ssm9Superpose10CalcNCombsEPNS_5GraphEPNS_7SSEDescEiPNS_6SpAtomEi at Base 1.3
- _ZN3ssm9Superpose10CalcQScoreERNS_7SSEDescE at Base 1.3
- _ZN3ssm9Superpose10FirstGuessEPiS1_i at Base 1.3
- _ZN3ssm9Superpose10FreeMemoryEv at Base 1.3
- _ZN3ssm9Superpose10GetTMatrixERA4_A4_d at Base 1.3
- _ZN3ssm9Superpose10GetTMatrixEv at Base 1.3
- _ZN3ssm9Superpose10SetAllowMCEh at Base 1.3
- _ZN3ssm9Superpose10_superposeEPNS_5GraphES2_Ri at Base 1.3
- _ZN3ssm9Superpose11GetCalphas1ERPP5CAtomRi at Base 1.3
- _ZN3ssm9Superpose11GetCalphas2ERPP5CAtomRi at Base 1.3
- _ZN3ssm9Superpose11GetSSEDesc1ERPNS_7SSEDescERi at Base 1.3
- _ZN3ssm9Superpose11GetSSEDesc1Ev at Base 1.3
- _ZN3ssm9Superpose11GetSSEDesc2ERPNS_7SSEDescERi at Base 1.3
- _ZN3ssm9Superpose11GetSSEDesc2Ev at Base 1.3
- _ZN3ssm9Superpose11RecoverGapsEPP5CAtomPNS_6SpAtomEiS3_S5_id at Base 1.3
- _ZN3ssm9Superpose12CalcDistanceEiiRNS_11SectionDistE at Base 1.3
- _ZN3ssm9Superpose12MatchQualityEid at Base 1.3
- _ZN3ssm9Superpose13ExpandContactER8SContactRiS3_d at Base 1.3
- _ZN3ssm9Superpose13InitSuperposeEv at Base 1.3
- _ZN3ssm9Superpose13MatchQuality2Eid at Base 1.3
- _ZN3ssm9Superpose13SelectCalphasEP12CMMDBManagerPNS_5GraphERPP5CAtomRPNS_6SpAtomERiSC_iPKc at Base 1.3
- _ZN3ssm9Superpose13UnmapExcludedEPNS_6SpAtomES2_i at Base 1.3
- _ZN3ssm9Superpose14CorrespondSSEsEPiiS1_id at Base 1.3
- _ZN3ssm9Superpose14OptimizeNalignEv at Base 1.3
- _ZN3ssm9Superpose15SetCaSelectionsEPKcS2_ at Base 1.3
- _ZN3ssm9Superpose16CalculateTMatrixEv at Base 1.3
- _ZN3ssm9Superpose16GetSuperpositionERPiRPdRiS2_S5_RA4_A4_dRdS5_S5_S9_S5_S9_ at Base 1.3
- _ZN3ssm9Superpose16SuperposeCalphasEPNS_13SuperposeDataES2_PiS3_i at Base 1.3
- _ZN3ssm9Superpose16SuperposeCalphasEPNS_5GraphES2_PiS3_iP12CMMDBManagerS5_ii at Base 1.3
- _ZN3ssm9Superpose17GetSSESpseCentersERNS_7SSEDescES2_S2_S2_RdS3_S3_S3_ at Base 1.3
- _ZN3ssm9Superpose17GetSuperposedSSEsEPiS1_Ri at Base 1.3
- _ZN3ssm9Superpose17SuperposeSSGraphsEPNS_5GraphEPiS2_S3_i at Base 1.3
- _ZN3ssm9Superpose18CleanShortSectionsEPNS_6SpAtomEiS2_ at Base 1.3
- _ZN3ssm9Superpose18CorrespondContactsEP12CMMDBManagerd at Base 1.3
- _ZN3ssm9Superpose18SetIterationLimitsEiii at Base 1.3
- _ZN3ssm9Superpose19ChooseFirstRotationEii at Base 1.3
- _ZN3ssm9Superpose21IdentifyUnmatchedSSEsERPiRiS2_S3_S1_iPNS_5GraphE at Base 1.3
- _ZN3ssm9Superpose4isMCEii at Base 1.3
- _ZN3ssm9Superpose7GetRMSDEv at Base 1.3
- _ZN3ssm9Superpose7MapSSEsEPP5CAtomPNS_6SpAtomEiPNS_5GraphERPNS_7SSEDescERi at Base 1.3
- _ZN3ssm9Superpose9AlignSSEsERNS_11SectionDistEi at Base 1.3
- _ZN3ssm9Superpose9CalcNGapsEPNS_6SpAtomEiRiS3_ at Base 1.3
- _ZN3ssm9Superpose9GetNAlignEv at Base 1.3
- _ZN3ssm9SuperposeC1Ev at Base 1.3
- _ZN3ssm9SuperposeC2Ev at Base 1.3
- _ZN3ssm9SuperposeD1Ev at Base 1.3
- _ZN3ssm9SuperposeD2Ev at Base 1.3
- _ZN7CStream4readER5CFile at Base 1.3
- _ZN7CStream5writeER5CFile at Base 1.3
- _ZN7CStreamD0Ev at Base 1.3
- _ZN7CStreamD1Ev at Base 1.3
- _ZN7CStreamD2Ev at Base 1.3
- _ZN9SMinTFunc4InitEv at Base 1.3
- _ZN9SMinTFunc7DisposeEv at Base 1.3
- _ZN9SMinTFunc8AllocateEi at Base 1.3
- _ZTI7CStream at Base 1.3
- _ZTIN3ssm10GraphMatchE at Base 1.3
- _ZTIN3ssm10XAlignTextE at Base 1.3
- _ZTIN3ssm12SortMappingsE at Base 1.3
- _ZTIN3ssm4EdgeE at Base 1.3
- _ZTIN3ssm5AlignE at Base 1.3
- _ZTIN3ssm5GraphE at Base 1.3
- _ZTIN3ssm5MatchE at Base 1.3
- _ZTIN3ssm6VertexE at Base 1.3
- _ZTIN3ssm6XAlignE at Base 1.3
- _ZTIN3ssm8SortDistE at Base 1.3
- _ZTIN3ssm9MultAlignE at Base 1.3
- _ZTS7CStream at Base 1.3
- _ZTSN3ssm10GraphMatchE at Base 1.3
- _ZTSN3ssm10XAlignTextE at Base 1.3
- _ZTSN3ssm12SortMappingsE at Base 1.3
- _ZTSN3ssm4EdgeE at Base 1.3
- _ZTSN3ssm5AlignE at Base 1.3
- _ZTSN3ssm5GraphE at Base 1.3
- _ZTSN3ssm5MatchE at Base 1.3
- _ZTSN3ssm6VertexE at Base 1.3
- _ZTSN3ssm6XAlignE at Base 1.3
- _ZTSN3ssm8SortDistE at Base 1.3
- _ZTSN3ssm9MultAlignE at Base 1.3
- _ZTV7CStream at Base 1.3
- _ZTVN3ssm10GraphMatchE at Base 1.3
- _ZTVN3ssm10XAlignTextE at Base 1.3
- _ZTVN3ssm12SortMappingsE at Base 1.3
- _ZTVN3ssm4EdgeE at Base 1.3
- _ZTVN3ssm5AlignE at Base 1.3
- _ZTVN3ssm5GraphE at Base 1.3
- _ZTVN3ssm5MatchE at Base 1.3
- _ZTVN3ssm6VertexE at Base 1.3
- _ZTVN3ssm6XAlignE at Base 1.3
- _ZTVN3ssm8SortDistE at Base 1.3
- _ZTVN3ssm9MultAlignE at Base 1.3
diff --git a/debian/rules b/debian/rules
index c26ffbd..75b8a66 100755
--- a/debian/rules
+++ b/debian/rules
@@ -3,7 +3,7 @@
CXXFLAGS += -D_REENTRANT
override_dh_auto_configure:
- dh_auto_configure -- --disable-static --enable-shared
+ dh_auto_configure -- --enable-superpose --enable-ccp4 --disable-static --enable-shared
%:
dh $@ --with autoreconf --dbg-package=libssm2-dbg
--
Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-science/packages/ssm.git
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