[pytables] 02/11: Merge tag 'upstream/3.1.0'

Antonio Valentino a_valentino-guest at moszumanska.debian.org
Fri Feb 21 07:57:41 UTC 2014


This is an automated email from the git hooks/post-receive script.

a_valentino-guest pushed a commit to branch master
in repository pytables.

commit 45982d7d9020cfc1eccd2f75d42b954c15e7c079
Merge: 24f9fa5 f486801
Author: Antonio Valentino <antonio.valentino at tiscali.it>
Date:   Fri Feb 21 07:48:05 2014 +0000

    Merge tag 'upstream/3.1.0'
    
    Upstream version 3.1.0

 .travis.yml                                        |    3 +-
 ANNOUNCE.txt.in                                    |   66 +-
 LICENSE.txt                                        |    2 +-
 LICENSE.txt => LICENSES/LZ4.txt                    |   31 +-
 LICENSE.txt => LICENSES/SNAPPY.txt                 |   27 +-
 LICENSES/STDINT.txt                                |    7 +-
 LICENSES/WIN32PTHREADS.txt                         |   19 +
 LICENSES/ZLIB.txt                                  |   22 +
 MANIFEST.in                                        |   12 +-
 Makefile                                           |    2 +
 README.txt                                         |    9 +-
 RELEASE_NOTES.txt                                  |  393 ++--
 VERSION                                            |    2 +-
 bench/LRU-experiments.py                           |   55 +-
 bench/LRU-experiments2.py                          |   30 +-
 bench/LRUcache-node-bench.py                       |   46 +-
 bench/blosc.py                                     |   40 +-
 bench/bsddb-table-bench.py                         |  143 +-
 bench/cacheout.py                                  |    8 +-
 bench/chunkshape-bench.py                          |   58 +-
 bench/chunkshape-testing.py                        |   62 +-
 bench/collations.py                                |   46 +-
 bench/copy-bench.py                                |   15 +-
 bench/create-large-number-objects.py               |    9 +-
 bench/deep-tree-h5py.py                            |   34 +-
 bench/deep-tree.py                                 |   70 +-
 bench/evaluate.py                                  |   43 +-
 bench/expression.py                                |   63 +-
 bench/get-figures-ranges.py                        |   17 +-
 bench/get-figures.py                               |   27 +-
 bench/indexed_search.py                            |  182 +-
 bench/keysort.py                                   |   31 +-
 bench/lookup_bench.py                              |   77 +-
 bench/open_close-bench-gzip.h5                     |  Bin 22472 -> 0 bytes
 bench/open_close-bench.py                          |   76 +-
 bench/optimal-chunksize.py                         |   73 +-
 bench/plot-bar.py                                  |   20 +-
 bench/poly.py                                      |   86 +-
 bench/postgres-search-bench.py                     |   77 +-
 bench/postgres_backend.py                          |   53 +-
 bench/pytables-search-bench.py                     |  130 +-
 bench/pytables_backend.py                          |   65 +-
 bench/recarray2-test.py                            |  114 +-
 bench/search-bench-plot.py                         |   41 +-
 bench/search-bench.py                              |  238 +--
 bench/searchsorted-bench.py                        |  161 +-
 bench/searchsorted-bench2.py                       |  159 +-
 bench/shelve-bench.py                              |  119 +-
 bench/sqlite-search-bench.py                       |  209 ++-
 bench/sqlite3-search-bench.py                      |   68 +-
 bench/stress-test.py                               |  170 +-
 bench/stress-test2.py                              |   95 +-
 bench/stress-test3.py                              |  111 +-
 bench/table-bench.py                               |  203 +-
 bench/table-copy.py                                |  226 +--
 bench/undo_redo.py                                 |   89 +-
 bench/widetree.py                                  |   86 +-
 bench/widetree2.py                                 |   46 +-
 c-blosc/.gitignore                                 |    1 +
 c-blosc/.mailmap                                   |    4 +
 c-blosc/.travis.yml                                |   12 +
 c-blosc/ANNOUNCE.rst                               |   68 +
 c-blosc/CMakeLists.txt                             |  207 ++
 c-blosc/LICENSES/BLOSC.txt                         |   23 +
 c-blosc/LICENSES/FASTLZ.txt                        |   24 +
 LICENSE.txt => c-blosc/LICENSES/H5PY.txt           |   15 +-
 LICENSE.txt => c-blosc/LICENSES/LZ4.txt            |   31 +-
 LICENSE.txt => c-blosc/LICENSES/SNAPPY.txt         |   27 +-
 {LICENSES => c-blosc/LICENSES}/STDINT.txt          |    0
 c-blosc/LICENSES/ZLIB.txt                          |   22 +
 c-blosc/README.rst                                 |  286 +++
 c-blosc/README_HEADER.rst                          |   66 +
 c-blosc/README_THREADED.rst                        |   33 +
 c-blosc/RELEASE_NOTES.rst                          |  318 ++++
 c-blosc/RELEASING.rst                              |  102 +
 c-blosc/bench/CMakeLists.txt                       |   72 +
 c-blosc/bench/Makefile                             |   40 +
 c-blosc/bench/Makefile.mingw                       |   45 +
 c-blosc/bench/bench.c                              |  539 ++++++
 c-blosc/bench/plot-speeds.py                       |  197 ++
 c-blosc/blosc/CMakeLists.txt                       |  104 ++
 {blosc => c-blosc/blosc}/blosc.c                   |  544 +++++-
 {blosc => c-blosc/blosc}/blosc.h                   |  194 +-
 {blosc => c-blosc/blosc}/blosclz.c                 |   19 +-
 {blosc => c-blosc/blosc}/blosclz.h                 |    0
 c-blosc/blosc/config.h.in                          |    9 +
 {blosc => c-blosc/blosc}/shuffle.c                 |   16 +-
 {blosc => c-blosc/blosc}/shuffle.h                 |    0
 {blosc => c-blosc/blosc}/win32/pthread.c           |   20 +-
 {blosc => c-blosc/blosc}/win32/pthread.h           |   26 +-
 {blosc => c-blosc/blosc}/win32/stdint-windows.h    |   22 +-
 c-blosc/cmake/FindLZ4.cmake                        |   10 +
 c-blosc/cmake/FindSnappy.cmake                     |   10 +
 c-blosc/cmake_uninstall.cmake.in                   |   22 +
 c-blosc/hdf5/CMakeLists.txt                        |   38 +
 c-blosc/hdf5/README.rst                            |   62 +
 {blosc => c-blosc/hdf5}/blosc_filter.c             |   46 +-
 {blosc => c-blosc/hdf5}/blosc_filter.h             |    6 +-
 c-blosc/hdf5/example.c                             |  126 ++
 .../internal-complibs/lz4-r110/add-version.patch   |   14 +
 c-blosc/internal-complibs/lz4-r110/lz4.c           |  865 +++++++++
 c-blosc/internal-complibs/lz4-r110/lz4.h           |  252 +++
 c-blosc/internal-complibs/lz4-r110/lz4hc.c         |  856 +++++++++
 c-blosc/internal-complibs/lz4-r110/lz4hc.h         |  157 ++
 .../snappy-1.1.1/add-version.patch                 |   19 +
 c-blosc/internal-complibs/snappy-1.1.1/msvc1.patch |   17 +
 c-blosc/internal-complibs/snappy-1.1.1/msvc2.patch |   27 +
 c-blosc/internal-complibs/snappy-1.1.1/snappy-c.cc |   90 +
 c-blosc/internal-complibs/snappy-1.1.1/snappy-c.h  |  146 ++
 .../snappy-1.1.1/snappy-internal.h                 |  150 ++
 .../snappy-1.1.1/snappy-sinksource.cc              |   71 +
 .../snappy-1.1.1/snappy-sinksource.h               |  137 ++
 .../snappy-1.1.1/snappy-stubs-internal.cc          |   42 +
 .../snappy-1.1.1/snappy-stubs-internal.h           |  491 +++++
 .../snappy-1.1.1/snappy-stubs-public.h             |  111 ++
 c-blosc/internal-complibs/snappy-1.1.1/snappy.cc   | 1306 +++++++++++++
 c-blosc/internal-complibs/snappy-1.1.1/snappy.h    |  192 ++
 c-blosc/internal-complibs/zlib-1.2.8/adler32.c     |  179 ++
 c-blosc/internal-complibs/zlib-1.2.8/compress.c    |   80 +
 c-blosc/internal-complibs/zlib-1.2.8/crc32.c       |  425 +++++
 c-blosc/internal-complibs/zlib-1.2.8/crc32.h       |  441 +++++
 c-blosc/internal-complibs/zlib-1.2.8/deflate.c     | 1967 ++++++++++++++++++++
 c-blosc/internal-complibs/zlib-1.2.8/deflate.h     |  346 ++++
 c-blosc/internal-complibs/zlib-1.2.8/gzclose.c     |   25 +
 c-blosc/internal-complibs/zlib-1.2.8/gzguts.h      |  209 +++
 c-blosc/internal-complibs/zlib-1.2.8/gzlib.c       |  634 +++++++
 c-blosc/internal-complibs/zlib-1.2.8/gzread.c      |  594 ++++++
 c-blosc/internal-complibs/zlib-1.2.8/gzwrite.c     |  577 ++++++
 c-blosc/internal-complibs/zlib-1.2.8/infback.c     |  640 +++++++
 c-blosc/internal-complibs/zlib-1.2.8/inffast.c     |  340 ++++
 c-blosc/internal-complibs/zlib-1.2.8/inffast.h     |   11 +
 c-blosc/internal-complibs/zlib-1.2.8/inffixed.h    |   94 +
 c-blosc/internal-complibs/zlib-1.2.8/inflate.c     | 1512 +++++++++++++++
 c-blosc/internal-complibs/zlib-1.2.8/inflate.h     |  122 ++
 c-blosc/internal-complibs/zlib-1.2.8/inftrees.c    |  306 +++
 c-blosc/internal-complibs/zlib-1.2.8/inftrees.h    |   62 +
 c-blosc/internal-complibs/zlib-1.2.8/trees.c       | 1226 ++++++++++++
 c-blosc/internal-complibs/zlib-1.2.8/trees.h       |  128 ++
 c-blosc/internal-complibs/zlib-1.2.8/uncompr.c     |   59 +
 c-blosc/internal-complibs/zlib-1.2.8/zconf.h       |  511 +++++
 c-blosc/internal-complibs/zlib-1.2.8/zlib.h        | 1768 ++++++++++++++++++
 c-blosc/internal-complibs/zlib-1.2.8/zutil.c       |  324 ++++
 c-blosc/internal-complibs/zlib-1.2.8/zutil.h       |  253 +++
 c-blosc/tests/.gitignore                           |    1 +
 c-blosc/tests/CMakeLists.txt                       |   14 +
 c-blosc/tests/Makefile                             |   46 +
 c-blosc/tests/print_versions.c                     |   32 +
 c-blosc/tests/test_all.sh                          |   14 +
 c-blosc/tests/test_api.c                           |  103 +
 c-blosc/tests/test_basics.c                        |  141 ++
 c-blosc/tests/test_common.h                        |   40 +
 doc/scripts/filenode.py                            |   29 +-
 doc/scripts/pickletrouble.py                       |   18 +-
 doc/scripts/tutorial1.py                           |  104 +-
 doc/source/FAQ.rst                                 |   21 +-
 doc/source/conf.py                                 |    4 +-
 doc/source/cookbook/custom_data_types.rst          |    9 +-
 doc/source/cookbook/hints_for_sql_users.rst        |   75 +-
 doc/source/cookbook/inmemory_hdf5_files.rst        |   32 +-
 doc/source/cookbook/tailoring_atexit_hooks.rst     |   25 +-
 doc/source/project_pointers.rst                    |    4 +-
 doc/source/release-notes/RELEASE_NOTES_v3.0.x.rst  |  304 ++-
 ...E_NOTES_v3.0.x.rst => RELEASE_NOTES_v3.1.x.rst} |    0
 doc/source/release_notes.rst                       |    4 +
 doc/source/usersguide/bibliography.rst             |    2 +-
 doc/source/usersguide/filenode.rst                 |   22 +-
 doc/source/usersguide/index.rst                    |    2 +-
 doc/source/usersguide/installation.rst             |  128 +-
 .../usersguide/libref/homogenous_storage.rst       |    2 +
 .../usersguide/libref/structured_storage.rst       |    2 +
 doc/source/usersguide/optimization.rst             |   39 +-
 doc/source/usersguide/parameter_files.rst          |    3 +
 doc/source/usersguide/tutorials.rst                |  192 +-
 doc/source/usersguide/usersguide.rst               |    2 +-
 doc/source/usersguide/utilities.rst                |    6 +-
 examples/add-column.py                             |   42 +-
 examples/array1.py                                 |   29 +-
 examples/array2.py                                 |   33 +-
 examples/array3.py                                 |   39 +-
 examples/array4.py                                 |   31 +-
 examples/attributes1.py                            |   11 +-
 examples/carray1.py                                |    5 +-
 examples/check_examples.sh                         |   32 +-
 examples/earray1.py                                |    7 +-
 examples/earray2.py                                |   70 +-
 examples/enum.py                                   |   22 +-
 examples/filenodes1.py                             |   24 +-
 examples/index.py                                  |   30 +-
 examples/inmemory.py                               |   52 +
 examples/links.py                                  |   21 +-
 examples/multiprocess_access_benchmarks.py         |   13 +-
 examples/multiprocess_access_queues.py             |   35 +-
 examples/nested-iter.py                            |    9 +-
 examples/nested-tut.py                             |  148 +-
 examples/nested1.py                                |   79 +-
 examples/objecttree.py                             |   24 +-
 examples/particles.py                              |  128 +-
 examples/read_array_out_arg.py                     |    6 +-
 examples/split.py                                  |   38 +
 examples/table-tree.py                             |  266 +--
 examples/table1.py                                 |   69 +-
 examples/table2.py                                 |   58 +-
 examples/table3.py                                 |   55 +-
 examples/tutorial1-1.py                            |  103 +-
 examples/tutorial1-2.py                            |  234 +--
 examples/tutorial2.py                              |   84 +-
 examples/tutorial3-1.py                            |    2 +-
 examples/tutorial3-2.py                            |    2 +-
 examples/undo-redo.py                              |   10 +-
 examples/vlarray1.py                               |   27 +-
 examples/vlarray2.py                               |   82 +-
 examples/vlarray3.py                               |   17 +-
 examples/vlarray4.py                               |   17 +-
 setup.py                                           |  164 +-
 src/H5ARRAY.c                                      |   20 +-
 src/H5TB-opt.c                                     |   18 +-
 src/H5VLARRAY.c                                    |   18 +-
 src/idx-opt.c                                      |   50 +-
 src/utils.c                                        |   93 +-
 subtree-merge-blosc.sh                             |   43 +
 tables/__init__.py                                 |   44 +-
 tables/_comp_bzip2.pyx                             |    3 +-
 tables/_comp_lzo.pyx                               |    3 +-
 tables/_past.py                                    |   15 +-
 tables/array.py                                    |   50 +-
 tables/atom.py                                     |   39 +-
 tables/attributeset.py                             |   19 +-
 tables/carray.py                                   |    6 +-
 tables/conditions.py                               |   49 +-
 tables/definitions.pxd                             |    4 +-
 tables/description.py                              |   68 +-
 tables/earray.py                                   |    2 +-
 tables/exceptions.py                               |   19 +-
 tables/expression.py                               |   18 +-
 tables/file.py                                     |  749 +++++---
 tables/filters.py                                  |  103 +-
 tables/flavor.py                                   |   10 +-
 tables/group.py                                    |  111 +-
 tables/hdf5Extension.py                            |    2 +-
 tables/hdf5extension.pyx                           |   82 +-
 tables/idxutils.py                                 |   23 +-
 tables/index.py                                    |   48 +-
 tables/indexes.py                                  |    6 +-
 tables/indexesExtension.py                         |    2 +-
 tables/indexesextension.pyx                        |  404 ++--
 tables/leaf.py                                     |   26 +-
 tables/link.py                                     |   28 +-
 tables/linkExtension.py                            |    2 +-
 tables/linkextension.pyx                           |    4 +-
 tables/lrucacheExtension.py                        |    2 +-
 tables/lrucacheextension.pxd                       |    3 +-
 tables/lrucacheextension.pyx                       |   27 +-
 tables/misc/enum.py                                |   40 +-
 tables/misc/proxydict.py                           |    2 +-
 tables/node.py                                     |   59 +-
 tables/nodes/filenode.py                           |   36 +-
 tables/nodes/tests/__init__.py                     |    2 +-
 tables/nodes/tests/test_filenode.py                |    8 +-
 tables/parameters.py                               |   49 +-
 tables/path.py                                     |    1 +
 tables/scripts/__init__.py                         |    3 +-
 tables/scripts/pt2to3.py                           |    6 +-
 tables/scripts/ptdump.py                           |  155 +-
 tables/scripts/ptrepack.py                         |  449 ++---
 tables/table.py                                    |  128 +-
 tables/tableExtension.py                           |    2 +-
 tables/tableextension.pyx                          |   45 +-
 tables/tests/__init__.py                           |    8 +-
 tables/tests/check_leaks.py                        |  281 ++-
 tables/tests/common.py                             |   97 +-
 tables/tests/test_all.py                           |   69 +-
 tables/tests/test_array.py                         |  455 ++---
 tables/tests/test_attributes.py                    |  412 ++--
 tables/tests/test_backcompat.py                    |   22 +-
 tables/tests/test_basics.py                        |  618 +++---
 tables/tests/test_carray.py                        |  477 +++--
 tables/tests/test_create.py                        |  618 ++++--
 tables/tests/test_do_undo.py                       |  302 +--
 tables/tests/test_earray.py                        |  448 ++---
 tables/tests/test_enum.py                          |  106 +-
 tables/tests/test_expression.py                    |  247 +--
 tables/tests/test_garbage.py                       |    5 +-
 tables/tests/test_hdf5compat.py                    |   40 +-
 tables/tests/test_index_backcompat.py              |   50 +-
 tables/tests/test_indexes.py                       |  699 +++----
 tables/tests/test_indexvalues.py                   | 1340 +++++++------
 tables/tests/test_links.py                         |  122 +-
 tables/tests/test_lists.py                         |  111 +-
 tables/tests/test_nestedtypes.py                   |  235 +--
 tables/tests/test_numpy.py                         |  371 ++--
 tables/tests/test_queries.py                       |  102 +-
 tables/tests/test_tables.py                        | 1291 +++++++------
 tables/tests/test_tablesMD.py                      |  341 ++--
 tables/tests/test_timetype.py                      |   49 +-
 tables/tests/test_tree.py                          |  206 +-
 tables/tests/test_types.py                         |   96 +-
 tables/tests/test_vlarray.py                       | 1191 ++++++------
 tables/unimplemented.py                            |    4 +-
 tables/utils.py                                    |   51 +-
 tables/utilsExtension.py                           |    2 +-
 tables/utilsextension.pyx                          |  143 +-
 tables/vlarray.py                                  |   35 +-
 302 files changed, 33470 insertions(+), 9458 deletions(-)

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