[mmdb] 02/03: Merge tag 'upstream/1.25.5'

[Frédéric-Emmanuel Picca]

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picca pushed a commit to branch master
in repository mmdb.

commit a9534e05468d5e94da7748a6650e2643f0fc4220
Merge: 8a805d6 54c5247
Author: Picca Frédéric-Emmanuel <picca at debian.org>
Date:   Mon Sep 2 18:48:28 2013 +0200

    Merge tag 'upstream/1.25.5'
    
    Upstream version 1.25.5

 AUTHORS                |   0
 COPYING                |   0
 COPYING.LESSER         |   0
 INSTALL                |   0
 README                 |   0
 build-aux/config.guess | 405 ++++++++++++++++++++++++++++---------------------
 build-aux/config.sub   | 279 ++++++++++++++++++++++------------
 build-aux/ltmain.sh    |   0
 config.h.in            |   0
 configure              |  20 +--
 configure.ac           |   2 +-
 m4/libtool.m4          |   0
 m4/ltoptions.m4        |   0
 m4/ltsugar.m4          |   0
 m4/ltversion.m4        |   0
 m4/lt~obsolete.m4      |   0
 mmdb/bfgs_min.cpp      |   0
 mmdb/bfgs_min.h        |   0
 mmdb/file_.cpp         |   0
 mmdb/file_.h           |   0
 mmdb/hybrid_36.cpp     |   0
 mmdb/hybrid_36.h       |   0
 mmdb/linalg_.cpp       |   0
 mmdb/linalg_.h         |   0
 mmdb/machine_.cpp      |   0
 mmdb/machine_.h        |   0
 mmdb/math_.cpp         |   0
 mmdb/math_.h           |   0
 mmdb/mattype_.cpp      |   0
 mmdb/mattype_.h        |   0
 mmdb/mmdb_align.cpp    |   0
 mmdb/mmdb_align.h      |   0
 mmdb/mmdb_atom.cpp     |   0
 mmdb/mmdb_atom.h       |   0
 mmdb/mmdb_bondmngr.cpp |   0
 mmdb/mmdb_bondmngr.h   |   0
 mmdb/mmdb_chain.cpp    |  99 ++++++------
 mmdb/mmdb_chain.h      |   0
 mmdb/mmdb_cifdefs.cpp  |   0
 mmdb/mmdb_cifdefs.h    |   0
 mmdb/mmdb_coormngr.cpp |   0
 mmdb/mmdb_coormngr.h   |   0
 mmdb/mmdb_cryst.cpp    |   0
 mmdb/mmdb_cryst.h      |   0
 mmdb/mmdb_defs.h       |   4 +-
 mmdb/mmdb_ficif.cpp    |   0
 mmdb/mmdb_ficif.h      |   0
 mmdb/mmdb_file.cpp     |   0
 mmdb/mmdb_file.h       |   0
 mmdb/mmdb_graph.cpp    |   0
 mmdb/mmdb_graph.h      |   0
 mmdb/mmdb_manager.cpp  |  27 ++--
 mmdb/mmdb_manager.h    |   7 +-
 mmdb/mmdb_mask.cpp     |   0
 mmdb/mmdb_mask.h       |   0
 mmdb/mmdb_mmcif.cpp    |   0
 mmdb/mmdb_mmcif.h      |   0
 mmdb/mmdb_model.cpp    |   0
 mmdb/mmdb_model.h      |   0
 mmdb/mmdb_rwbrook.cpp  |   0
 mmdb/mmdb_rwbrook.h    |   0
 mmdb/mmdb_sbase.cpp    |   0
 mmdb/mmdb_sbase.h      |   0
 mmdb/mmdb_sbase0.cpp   |   0
 mmdb/mmdb_sbase0.h     |   0
 mmdb/mmdb_selmngr.cpp  |   0
 mmdb/mmdb_selmngr.h    |   0
 mmdb/mmdb_symop.cpp    |   0
 mmdb/mmdb_symop.h      |   0
 mmdb/mmdb_tables.cpp   |   0
 mmdb/mmdb_tables.h     |   0
 mmdb/mmdb_title.cpp    |   6 +-
 mmdb/mmdb_title.h      |   3 +-
 mmdb/mmdb_uddata.cpp   |   0
 mmdb/mmdb_uddata.h     |   0
 mmdb/mmdb_utils.cpp    |  65 ++++----
 mmdb/mmdb_utils.h      |   6 +-
 mmdb/mmdb_xml.cpp      |   0
 mmdb/mmdb_xml.h        |   0
 mmdb/random_n.cpp      |   0
 mmdb/random_n.h        |   0
 mmdb/stream_.cpp       |   0
 mmdb/stream_.h         |   0
 83 files changed, 545 insertions(+), 378 deletions(-)

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