[gerris] branch master updated (73a4c28 -> 7101924)
Anton Gladky
gladk at moszumanska.debian.org
Thu Jul 31 22:49:42 UTC 2014
This is an automated email from the git hooks/post-receive script.
gladk pushed a change to branch master
in repository gerris.
from 73a4c28 Update changelog
new 520d60b Set versioned build-depends for gts.
new 25767fd Update changelog.
new 8fe0565 Update watch-file.
new bb1c3c7 Use DEP-5 for d/copyright.
adds c86c187 Bug fix for incorrect generation of dependencies in tests docs
adds c3c790d Adaptivity cannot coarsen by more than one level per timestep
adds a91bfc5 GfsVariableTerrain also reconstructs H and P of GfsRiver
adds 16a3e0f Bug fix for write() method of GfsSurface
adds 17a7ca1 New gfsjoin2D, gfsjoin3D tools
adds 482e65e Bug fix for GfsSolidMoving/GfsSurface write() method
adds 30cf34f Updated test case references
adds ce30f89 GfsDomain automatically converts GfsBoundaryMPI into edges on read
adds 80e910a New 'keep' option for gfsjoin2D
adds acdd7bb Added man pages for gfsjoin2D, gfsjoin3D
adds 825eea5 Added MPI_Finalize() as required by MPI standard
adds b61b6eb GfsEventScript is only called for rank 0 PE in parallel
adds 2d4f937 GfsOutputSimulation can write "joined" parallel simulation files
adds 10eb276 Added configuration options to "--version" info
adds 76151b1 Improved error messages in parallel (includes processor name)
adds 0c5d3d3 Bug fix for file access test in parallel
adds aee4169 Major bug fix for GfsBoundaryPeriodic
adds 7bf8487 New functions gfs_send_boxes() and gfs_receive_boxes()
adds 4ee59fa Added version info to read()/write() methods of GfsDomain
adds aa8f66b GfsInitFraction should now work also for parallel simulations
adds f6dae73 Box positions set in the parameter file are preserved
adds f14d42a OutputBalance ignores box pids for serial runs
adds 63b2cd2 OutputTime reports average CPU time for parallel runs
adds 2144b2a EventBalance implements dynamic load balancing on 2 PEs only
adds 95fcd69 GfsOutputDropletSums and GfsRemoveDroplets should now work in parallel
adds 4d802b9 Added 'launchpad-snapshot' Makefile target
adds 57943c3 Debian packages are built with MPI support
adds 6837483 Automatically include aclocal m4 macros
adds 20a6147 Fixed Debian version numbering
adds acf3753 GfsBoundaryMpi is included by default (even in the serial version)
adds 5621817 Added openmpi-bin as a dependency for debian package
adds 41f4c90 Fixed header dependency for domain.c
adds 703af7b daily script only generates launchpad snapshots
adds d330d3a Dynamic parallel load-balancing (EventBalance)
adds bf52e2e Entirely solid boxes can be used
adds cd58e34 Output timing now outputs sorted timings
adds 33ca3dd A few fixes for OutputTiming
adds 7a20f68 New '--pid' option for gerris2D/3D
adds 7a5816c Fixed GfsVariableCurvature timers
adds f1a5c67 New option '--event' for gerris2D/3D
adds 70da71a gfs_domain_locate() uses a Cartesian array for fast indexing
adds 9b570af Various small fixes
adds 8b67813 GfsEventBalance flows can transfer more than one box at a time
adds 9a3ecaa Bug fix for dividing by zero in moving code
adds 35de45e Fix for problem with small cells and moving solid interface in second
adds b3ee02c Divergence redistribution between merged cells for moving boundaries
adds 56535d3 Important bug fix for graph partitioning
adds 5fdc0d5 Moving cylinder test case
adds 4584826 Simplified divergence redistribution of moving boundaries
adds 6e0ff62 New parallel vortex street example
adds 45b9b01 Improved parallel example graph
adds 0d82750 Daily script uses the parallel version
adds b87d9e9 Overlapping communications and computations
adds ac9b957 New interface for gfs_domain_locate() and gfs_domain_boundary_locate()
adds ca1a86b New function gfs_traverse_and_bc()
adds d1ca524 Fix for moving second order bug with merged cells
adds 03e6e38 Fixed debian changelog generation
adds a417a38 Added option to use "bubble partitioning"
adds 5ddb725 Fix for incorrect maxtag MPI value
adds 7a52ae7 GfsOutputSolidForce can take an optional weight argument
adds 9d44ff3 Fixed negative wave actions in wavewatch module
adds ffdbe58 Minor optimisation of gfs_domain_solid_force()
adds 6717e35 Important improvements to GfsAdaptError
adds 45cea39 Removed obsolete GfsAdaptCurvature
adds 66a9b31 GSE alleviation for GfsWave wind wave model
adds 8d7b04c Added stability correction for wind wave model
adds f9da773 GfsRefineTerrain defines two new variables "dmin" and "dmax"
adds 1ef036a Bug fix for gfs_function_expression()
adds c6be533 H and P terrain reconstruction for GfsVariableTerrain is optional
adds 4351914 BcSubcritical now tolerates negative depths
adds 8b6b092 Cosmetics for wave model
adds be0d6b1 Bug fix for gfs_streamline_new()
adds 4868f34 New object GfsSourceFlux
adds 2a06f6d New object GfsSourceControlField
adds 8a59849 Cosmetics
adds 4581bd2 RPM includes man pages
adds 6a902e4 Some fixes to the rpm spec file
adds 4590b44 Bug fix for CGD/GTS files and multiple GfsFunctions
adds 16f097f Units of VariableTerrain are properly reset
adds 719a13b Support for "preloaded" modules
adds 3325a3b Fixed missing header in OutputSimulation
adds 4cdeebf New "relative" option for GfsOutputErrorNorm
adds 79a35c8 Support for "rotated" periodic boundaries
adds 9e3c80e New object GfsVariableStreamFunction
adds 633df0d Longitude-latitude metric
adds 4fd1ca0 General Orthogonal Coordinates
adds ae70f89 Hydrostatic balance for 2nd-order curvilinear scheme in GfsRiver
adds 620d232 CFL calculation for GfsRiver takes metric into account
adds ab70c75 New object GfsMapFunction
adds 83beb12 Adaptivity takes "minlevel" into account properly
adds cc79ac8 "Cubed sphere" metric
adds 4623e3b Optimisation of GfsMetricLonLat and GfsMetricCubed
adds 48a36ec gfs_domain_cfl() takes metric into account
adds bc9254b Updated test cases
adds fab77ab Extended "Cubed" metric to entire "expanded spherical cube"
adds 8731f8d MetricCubed takes an optional "level" parameter
adds ee051a1 coarse->fine and fine->coarse interpolations take metric into account
adds f449210 Update of the strouhal testcase
adds 03e9a57 Godunov advection scheme takes metric into account
adds 1df8266 OutputScalarSum, OutputScalarNorm etc... take metric into account
adds 6968949 New 'cosine bell' test case
adds 0b2352f Macros only work with gawk (i.e. not mawk)
adds 2dd8a1b Metrics descend from GfsVariableMetric
adds dcdf89d Updated advection test case
adds c0c1316 Updated spurious currents test cases
adds c08cb68 Fixed compiler warnings for FES2004
adds 0e2af88 Wavewatch module supports versions 3.14 and 2.22
adds 36cd8af New object GfsEventList
adds 91ba7d4 wavewatch module supports version 3.12
adds f6c4e21 Clean out ready for syncing with upstream tarball.
adds 49fe5eb Upstream snapshot tarball release 2009-11-09
adds 75d314b Delete upstream debian directory.
adds d5fced0 DFSG: remove modules/RStarTree (copyright licence not available)
adds e20d8a6 DFSG: remove modules/fes2004 (contains non-free Aktarus functions)
adds 6215e7a Remove debian subdir from upstream autoconf files
adds e8f73a0 autoreconf for DFSG-free upstream source
adds fbad169 new upstream tarball 2011-03-30
adds d9f767c remove upstream debian directory
adds 2bd07e5 DFSG: remove RStarTree and fes2004 modules
adds e211f9f autoreconf for DFSG-free upstream source
adds 85bdca4 remove RStartTree and FES references in module build
adds ac9e6cb autoreconf for 20110329-dfsg.2
adds 653f6dd Imported Upstream version 20131206+dfsg
new 82e3c44 Merge.
new 4180f06 Refresh patches.
new 652d9bc Add missing build_functions file.
new 2574e98 Replace ffmpeg command by avconv.
new 3141ff8 Add missing Makefile.in.
new 23b1801 Minor update in install-files.
new 295e03c Use wrap-and-sort.
new a34c986 Add autopkgtest.
new 7101924 Update changelog.
The 13 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails. The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.
Summary of changes:
ChangeLog | 1368 +++
INSTALL | 13 +
Makefile.am | 24 +
Makefile.in | 259 +
aclocal.m4 | 8920 +++++++++++++++++++-
build_function_gcc | 36 +
build_function_libtool | 38 +
compile | 247 +
config.guess | 301 +-
config.h.in | 48 +
config.sub | 303 +
configure | 3418 +++++++-
configure.in => configure.ac | 352 +-
{doc/tutorial => debian}/Makefile.in | 145 +-
debian/changelog | 21 +
debian/control | 169 +-
debian/copyright | 145 +-
debian/gerris-mpi.install | 2 -
debian/gerris.install | 6 +-
debian/gerris.links | 4 +-
debian/libgfs-dev.install | 2 -
debian/libgfs-mpi-dev.install | 2 -
debian/patches/01_automake_doc_examples | 24 +-
debian/patches/02_fix_makefiles.patch | 57 +-
debian/patches/03_build_funct.patch | 43 +
debian/patches/04_replace_ffmpeg_by_avconv.patch | 91 +
debian/patches/series | 2 +
debian/rules | 3 +-
debian/tests/control | 2 +
.../conservation.gfs => debian/tests/testCons | 44 +-
.../hydrostatic.gfs => debian/tests/testHydro | 24 +-
.../kinetic.gfs => debian/tests/testKinetic | 31 +-
debian/tests/testPlate | 45 +
.../quadratic.gfs => debian/tests/testQuadr | 28 +-
debian/watch | 4 +-
depcomp | 231 +
desktop/Makefile.in | 112 +
doc/Makefile.am | 29 +
doc/Makefile.in | 122 +
doc/examples/Makefile.am | 40 +
doc/examples/Makefile.deps | 268 +
doc/examples/Makefile.in | 650 ++
doc/examples/atomisation.sh | 1 +
doc/examples/boussinesq.sh | 1 +
doc/examples/bubble.sh | 1 +
doc/examples/bubble/bubble.gfs | 152 +
doc/examples/bubble/bubble.gfv | 117 +
doc/examples/bubble/bubble.sh | 32 +
doc/examples/bubble/cap/bubble.gfv | 117 +
doc/examples/bubble/cap/bubble.sh | 32 +
doc/examples/bubble/cap/cap.gfs | 149 +
doc/examples/column.sh | 1 +
doc/examples/column/column.gfs | 3 +
doc/examples/cyclone.sh | 1 +
doc/examples/cylinder.sh | 1 +
doc/examples/dam.sh | 1 +
doc/examples/dam/dam.gfs | 47 +-
doc/examples/depend.py | 7 +-
doc/examples/forcedturbulence.sh | 1 +
doc/examples/garden.sh | 1 +
doc/examples/gfs-highlight.in | 4 +-
doc/examples/gfs2doc.in | 2 +-
doc/examples/hump.sh | 1 +
doc/examples/logo.sh | 1 +
doc/examples/monai.sh | 1 +
doc/examples/plateau.sh | 1 +
doc/examples/plateau/plateau.gfs | 17 +
doc/examples/rt.sh | 1 +
doc/examples/ship.sh | 1 +
doc/examples/shock.sh | 1 +
.../zero.gfv => doc/examples/shock/depth.gfv | 23 +-
.../isolines.gfv => doc/examples/shock/mesh.gfv | 24 +-
doc/examples/shock/shock.gfs | 72 +
doc/examples/starting.sh | 1 +
doc/examples/starting/n2414.dat | 62 +
doc/examples/starting/starting.gfs | 76 +
.../zero.gfv => doc/examples/starting/starting.gfv | 21 +-
doc/examples/starting/starting.sh | 4 +
doc/examples/tangaroa.sh | 1 +
doc/examples/template.tex | 43 +-
doc/examples/tides.sh | 1 +
doc/examples/tsunami.sh | 1 +
doc/examples/viscmix.sh | 1 +
doc/examples/viscmix/run.sh | 17 +
doc/examples/viscmix/viscmix.gfs | 170 +
doc/examples/viscmix/viscmix.gfv | 57 +
doc/examples/wingtip.sh | 1 +
doc/examples/wingtip/n2414.dat | 62 +
doc/examples/wingtip/wingtip.gfs | 77 +
doc/examples/wingtip/wingtip.gfv | 88 +
doc/examples/wingtip/wingtip.sh | 4 +
doc/figures/diffusion.tm | 168 +
doc/figures/viscous-metric-3D.tm | 148 +
doc/figures/viscous-metric.tm | 178 +
doc/gerris.bib | 607 ++
doc/manpages/Makefile.in | 108 +
doc/tutorial/Makefile.in | 80 +
install-sh | 44 +
ltmain.sh | 168 +
m4/libtool.m4 | 449 +
m4/ltoptions.m4 | 21 +
m4/ltversion.m4 | 12 +
missing | 24 +
modules/Makefile.am | 170 +-
modules/Makefile.in | 849 ++
modules/{kdt => RStarTree}/Makefile.in | 299 +-
modules/RStarTree/RSTBase.h | 218 +
modules/RStarTree/RStarTree.c | 925 ++
modules/RStarTree/RStarTree.h | 780 ++
modules/{agmg.mod => agmg.c} | 0
modules/bubbles.c | 511 ++
modules/culvert.c | 176 +
modules/culvert/Makefile.am | 37 +
modules/{kdt => culvert}/Makefile.in | 320 +-
modules/culvert/boyd87.c | 273 +
modules/culvert/boyd87.h | 100 +
modules/culvert/check_inlet.c | 13 +
modules/culvert/check_outlet.c | 15 +
modules/culvert/discharge_table.c | 30 +
modules/df3.c | 357 +
modules/electrohydro.c | 896 ++
modules/{kdt => fes2004}/Makefile.in | 296 +-
modules/fes2004/fes2004_extraction.c | 60 +
modules/fes2004/fes2004_io.c | 23 +
modules/fes2004/fes2004_kernel.c | 1277 +++
modules/fes2004/fes2004_lib.h | 415 +
modules/fes2004/fes2004_prediction.c | 61 +
modules/fft.c | 368 +
modules/hypre.c | 1084 +++
modules/kdt/Makefile.am | 18 +
modules/kdt/Makefile.in | 151 +
modules/kdt/kdt.c | 821 ++
modules/kdt/kdt.h | 71 +
modules/kdt/{xyz2kdt.c => kdt2kdt.c} | 70 +-
modules/kdt/kdtquery.c | 8 +
modules/kdt/xyz2kdt.c | 40 +
modules/layered.c | 727 ++
modules/{lis.mod => lis.c} | 0
modules/{map.mod => map.c} | 31 +-
modules/ode.c | 233 +
modules/okada.c | 308 +
modules/particulatecommon.c | 1415 ++++
modules/particulatecommon.h | 186 +
src/unstructured.h => modules/particulates.c | 41 +-
modules/rsurface.c | 21 +-
modules/rsurface.h | 19 +-
modules/{kdt/xyz2kdt.c => rsurface2kdt.c} | 85 +-
modules/rsurfacedraw.c | 150 -
modules/rsurfacequery.c | 37 -
modules/skewsymmetric.c | 814 ++
modules/{stokes.mod => stokes.c} | 52 +-
modules/{terrain.mod => terrain.c} | 224 +-
modules/{tide.mod => tide.c} | 9 +-
modules/topics.c | 1328 +++
modules/{wavewatch.mod => wavewatch.c} | 20 +-
modules/wavewatch/Makefile.in | 84 +
src/Makefile.am | 29 +-
src/Makefile.in | 338 +
src/adaptive.c | 202 +-
src/adaptive.h | 28 +
src/advection.c | 76 +-
src/advection.h | 12 +
src/boundary.c | 184 +-
src/boundary.h | 13 +
src/cartesian.c | 69 +-
src/cartesian.h | 2 +
src/domain.c | 1014 ++-
src/domain.h | 121 +-
src/event.c | 152 +-
src/event.h | 1 +
src/fluid.c | 460 +-
src/fluid.h | 13 +-
src/ftt.h | 9 +-
src/function.h | 64 +
src/gerris.c | 132 +-
src/gfs-config.in | 108 -
src/graphic.c | 125 +-
src/graphic.h | 13 +-
src/init.c | 56 +-
src/isocube.h | 55 +-
src/levelset.c | 16 +-
src/m4.awk | 28 +-
src/map.c | 303 +-
src/map.h | 21 +
src/metric.c | 1593 +++-
src/metric.h | 109 +
src/moving.c | 61 +-
src/moving2.c | 12 +-
src/mpi_boundary.c | 82 +-
src/ocean.c | 97 +-
src/open_memstream.c | 191 +
src/output.c | 185 +-
src/output.h | 4 +
src/particle.c | 4 +
src/particle.h | 4 +
src/poisson.c | 494 +-
src/poisson.h | 34 +-
src/river.c | 1623 +++-
src/river.h | 74 +-
src/simulation.c | 515 +-
src/simulation.h | 23 +-
src/solid.c | 17 +-
src/source.c | 439 +-
src/source.h | 37 +-
src/spatial.h | 7 +
src/surface.c | 10 +-
src/tension.c | 167 +-
src/timestep.c | 336 +-
src/timestep.h | 31 +-
src/unstructured.c | 239 +-
src/unstructured.h | 10 +-
src/utils.c | 993 ++-
src/utils.h | 120 +-
src/variable.c | 768 +-
src/variable.h | 88 +-
src/verify.h | 245 +
src/version.h | 4 +
src/vof.c | 1814 +++-
src/vof.h | 74 +-
src/wave.c | 4 +
test/Makefile.am | 35 +-
test/Makefile.deps | 805 ++
test/Makefile.in | 966 +++
test/advection.sh | 1 +
test/annulus.sh | 1 +
test/annulus/annulus.gfs | 79 +
test/annulus/annulus.sh | 53 +
test/annulus/error.ref | 4 +
test/axi.sh | 1 +
test/axi/error.ref | 8 +-
test/axi/order.ref | 6 +-
test/axi/viscous/viscous.gfs | 1 -
test/axiadvection.sh | 1 +
test/boundaries.sh | 1 +
test/bump.sh | 1 +
test/bump/bump.gfs | 44 +
test/bump/bump.sh | 48 +
test/bump/{norms.ref => norms-explicit.ref} | 0
test/bump/norms-implicit.ref | 61 +
test/capwave.sh | 1 +
test/capwave/air-water/air-water.gfs | 2 +-
test/capwave/air-water/convergence.ref | 8 +-
test/capwave/capwave.gfs | 2 +-
test/capwave/convergence.ref | 8 +-
test/capwave/density/convergence.ref | 8 +-
test/capwave/density/density.gfs | 2 +-
test/capwave/gravity/convergence.ref | 8 +-
test/capwave/gravity/gravity.gfs | 2 +-
test/channel.sh | 1 +
test/channel/orderU.ref | 4 +-
test/channel/orderV.ref | 4 +-
test/channel/orderfU.ref | 4 +-
test/channel/orderfV.ref | 4 +-
test/circle.sh | 1 +
test/circle/error.ref | 9 +
test/circle/order.ref | 10 +-
test/circle/refined/error.ref | 9 +
test/circle/refined/order.ref | 8 +
test/circle/refined/res-7.ref | 13 +
test/circle/res-7.ref | 13 +
test/circle/star/error.ref | 9 +
test/circle/star/order.ref | 10 +-
test/circle/star/res-7.ref | 13 +
test/conservation.sh | 1 +
test/conservation/conservation.gfs | 8 +
test/coriolis.sh | 1 +
test/coriolis/coriolis.gfs | 10 +
test/cosine.sh | 1 +
test/cosine/cosine.gfs | 64 +
test/cosine/cosine.sh | 15 +
test/cosine/error-45.ref | 7 +
test/cosine/error-90.ref | 7 +
test/cosine/isolines.gfv | 13 +
test/cosine/reference.gfv | 17 +
test/cosine/zero.gfv | 13 +
test/couette.sh | 1 +
test/couette/couette.gfs | 4 +-
test/cylinder.sh | 1 +
test/cylinder/cylinder.gfs | 37 +
test/cylinder/cylinder.sh | 11 +
test/cylinder/norms.ref | 7 +
test/cylinder/planar/planar.gfs | 8 +
test/debye.sh | 1 +
test/debye/analytical | 100 +
test/debye/debye.gfs | 115 +
test/debye/debye.sh | 37 +
test/debye/points | 51 +
test/depend.py | 14 +-
test/diffusion.sh | 1 +
test/diffusion/concentration/concentration.gfs | 74 +
test/diffusion/concentration/concentration.sh | 39 +
test/diffusion/diffusion.gfs | 6 +
test/dumbell.sh | 1 +
test/electro.sh | 1 +
test/electro/convergence.ref | 7 +
test/electro/electro.gfs | 18 +
test/electro/electro.sh | 4 +
test/gaussian.sh | 1 +
test/geo.sh | 1 +
test/geo/e.ref | 1584 ++++
test/geo/geo.gfs | 43 +-
test/geo/geo.sh | 13 +-
test/geo/river/e.ref | 1581 ++++
test/geo/{ => river}/geo.gfv | 0
test/geo/{ => river}/geo.sh | 13 +-
test/geo/river/river.gfs | 84 +
test/groundwater.sh | 1 +
test/groundwater/U.ref | 9 +
test/groundwater/groundwater.gfs | 95 +
test/groundwater/groundwater.gfv | 57 +
test/groundwater/groundwater.sh | 54 +
test/groundwater/p.ref | 9 +
test/groundwater/piecewise/U.ref | 9 +
test/groundwater/piecewise/p.ref | 9 +
test/groundwater/piecewise/piecewise.gfs | 106 +
test/groundwater/piecewise/piecewise.gfv | 57 +
test/harmonic.sh | 1 +
test/harmonic/error.ref | 9 +
test/harmonic/harmonic.gfs | 11 +
test/harmonic/lonlat/res-7.ref | 14 +
test/harmonic/order.ref | 8 +
test/harmonic/res-7.ref | 14 +
test/height.sh | 1 +
test/height/height.gfs | 27 +
test/height/height.sh | 32 +
test/height/height1.gfs | 14 +
test/height/height2.gfs | 14 +
test/height/height3.gfs | 20 +
test/height/height4.gfs | 21 +
test/height/height5.gfs | 21 +
test/hexagon.sh | 1 +
test/hydrostatic.sh | 1 +
test/hydrostatic/hydrostatic.gfs | 4 +
test/hydrostatic/quadratic/quadratic.gfs | 2 +-
test/injectionaxi.sh | 1 +
test/injectionaxi/injectionaxi.gfs | 104 +
test/kinetic.sh | 1 +
test/kinetic/kinetic.gfs | 2 +-
test/lake.sh | 1 +
test/lake/lake.gfs | 15 +
test/lake/river/error.ref | 4 +
test/lake/river/river.gfs | 75 +
test/lake/river/river.sh | 59 +
test/lake/stratified/error.ref | 4 +
test/lake/stratified/field.awk | 26 +
test/lake/stratified/stratified.gfs | 154 +
test/lake/stratified/stratified.sh | 94 +
test/lake/stratified/thermo.awk | 12 +
test/lid.sh | 1 +
test/lid/lid.sh | 2 +
test/{cosine => lid/metric}/isolines.gfv | 26 +-
.../lid/{stretch/stretch.gfs => metric/metric.gfs} | 82 +-
test/lid/{stretch => metric}/xprof.ghia | 0
test/lid/{stretch => metric}/xprofile | 0
test/lid/{stretch => metric}/yprof.ghia | 0
test/lid/{stretch => metric}/yprofile | 0
test/lid/stretch/stretch.gfs | 4 +
test/lonlat.sh | 1 +
test/lonlat/{lonlat.gfs => cubed/cubed.gfs} | 101 +-
test/{cosine => lonlat/cubed}/isolines.gfv | 15 +-
test/lonlat/lonlat.gfs | 4 +
test/merging.sh | 1 +
test/merging/sim.err.ref | 6 +
test/nonlinear.sh | 1 +
test/nonlinear/error-1.ref | 502 ++
test/nonlinear/error-ocean-1.ref | 502 ++
.../isolines.gfv => nonlinear/error-ocean.gfv} | 25 +-
test/nonlinear/error-river-1.ref | 714 ++
test/{cosine/isolines.gfv => nonlinear/error.gfv} | 23 +-
test/nonlinear/nonlinear.gfs | 104 +
test/nonlinear/nonlinear.sh | 44 +
test/nonlinear/ocean.gfs | 50 +
test/nonlinear/river.gfs | 53 +
test/nz.sh | 1 +
test/oscillation.sh | 1 +
test/oscillation/fit.ref | 7 +
test/oscillation/oscillation.gfs | 27 +-
test/oscillation/oscillation.sh | 70 +-
test/parabola.sh | 1 +
test/parabola/error.ref | 8 +
test/parabola/parabola.gfs | 14 +-
test/parabola/parabola.sh | 4 +-
test/parabola/solid/error.ref | 5 +
test/parabola/{parabola.gfs => solid/solid.gfs} | 83 +-
test/periodic.sh | 1 +
test/planar.sh | 1 +
test/plate.sh | 1 +
test/plateau.sh | 1 +
test/plateau/plateau.gfs | 162 +
test/plateau/plateau.gfv | 64 +
test/plateau/zoom.gfv | 57 +
test/poiseuille.sh | 1 +
test/poiseuille/bagnold/bagnold.gfs | 6 +
test/poiseuille/metric/error.ref | 4 +
.../{poiseuille.gfs => metric/metric.gfs} | 23 +-
test/poiseuille/poiseuille.gfs | 3 +
test/poiseuille/river/error.ref | 4 +
test/poiseuille/river/river.gfs | 64 +
test/poiseuille/river/river.sh | 39 +
test/poisson.sh | 1 +
test/poisson/dirichlet/error.ref | 9 +
test/poisson/dirichlet/order.ref | 8 +
test/poisson/dirichlet/res-7.ref | 14 +
test/reynolds.sh | 1 +
test/reynolds/box/box.gfs | 22 +-
test/reynolds/box/div5.ref | 292 +-
test/reynolds/box/div6.ref | 736 +-
test/reynolds/box/div7.ref | 1546 ++--
test/reynolds/reynolds.gfs | 22 +-
test/reynolds/reynolds.sh | 22 +-
test/reynolds/skew/div5.ref | 81 +
test/reynolds/skew/div6.ref | 161 +
test/reynolds/skew/div7.ref | 321 +
test/reynolds/skew/reynolds.ref | 3 +
test/reynolds/{box/box.gfs => skew/skew.gfs} | 41 +-
test/reynolds/{reynolds.sh => skew/skew.sh} | 37 +-
test/reynolds/skewbox/error.ref | 3 +
test/reynolds/skewbox/skew.sh | 48 +
test/reynolds/skewbox/skewbox.gfs | 56 +
test/reynolds/stream/div5.ref | 80 +
test/reynolds/stream/div6.ref | 161 +
test/reynolds/stream/div7.ref | 321 +
test/reynolds/stream/reynolds.ref | 3 +
test/reynolds/stream/stream.gfs | 80 +
test/rossby.sh | 1 +
test/rossby/ec-6 | 208 +
test/rossby/eh-4.ref | 208 +
test/rossby/eh-5.ref | 208 +
test/rossby/eh-6.ref | 208 +
test/{cosine/isolines.gfv => rossby/ehm.gfv} | 17 +-
test/{cosine/isolines.gfv => rossby/ehp.gfv} | 13 +-
test/{cosine/zero.gfv => rossby/h.gfv} | 19 +-
test/{cosine/zero.gfv => rossby/href.gfv} | 17 +-
test/rossby/ocean/ec-6 | 208 +
test/rossby/ocean/eh-4.ref | 208 +
test/rossby/ocean/eh-5.ref | 208 +
test/rossby/ocean/eh-6.ref | 208 +
test/{cosine/isolines.gfv => rossby/ocean/ehm.gfv} | 17 +-
test/{cosine/isolines.gfv => rossby/ocean/ehp.gfv} | 13 +-
test/{cosine/zero.gfv => rossby/ocean/h.gfv} | 19 +-
test/{cosine/zero.gfv => rossby/ocean/href.gfv} | 17 +-
test/rossby/ocean/ocean.gfs | 166 +
test/rossby/river/ec-6 | 3112 +++++++
test/rossby/river/eh-4.ref | 488 ++
test/rossby/river/eh-5.ref | 1236 +++
test/rossby/river/eh-6.ref | 3112 +++++++
test/{cosine/isolines.gfv => rossby/river/ehm.gfv} | 17 +-
test/{cosine/isolines.gfv => rossby/river/ehp.gfv} | 13 +-
test/{cosine/zero.gfv => rossby/river/h.gfv} | 19 +-
test/{cosine/zero.gfv => rossby/river/href.gfv} | 17 +-
test/rossby/river/river.gfs | 161 +
test/rossby/rossby.gfs | 158 +
test/rossby/rossby.sh | 83 +
test/rotate.sh | 1 +
test/rotate/cells.gfv | 48 +
test/rotate/error.n1 | 40 +
test/rotate/error.ref | 40 +
test/rotate/n1-0.gnu | 10 +
test/rotate/n1-1.gnu | 14 +
test/rotate/n1-2.gnu | 24 +
test/rotate/n1-5.gnu | 18 +
test/rotate/rotate.gfs | 125 +
test/rotate/rotate.gfv | 31 +
test/sessile.sh | 1 +
test/sessile/error-6.ref | 7 +
test/sessile/sessile.gfs | 69 +
test/sessile/sessile.sh | 90 +
test/shear.sh | 1 +
test/shear/concentration/concentration.gfs | 111 +
test/shear/concentration/concentration.sh | 52 +
test/shear/concentration/convergence.ref | 4 +
test/shear/concentration/convergence1.ref | 4 +
test/shear/concentration/convergence2.ref | 4 +
test/shear/concentration/t1.gfv | 54 +
test/shear/concentration/t2.gfv | 54 +
test/shear/curvature/curvature.gfs | 19 +-
test/shear/curvature/norms.ref | 4 +
test/shear/norms.ref | 4 +
test/shear/shear.gfs | 7 +-
test/shock.sh | 1 +
test/shock/error.ref | 4 +
test/shock/layered/field.awk | 26 +
test/shock/layered/layered.gfs | 112 +
test/shock/layered/layered.sh | 71 +
test/shock/layered/prof.ref | 256 +
test/shock/layered/uprof.awk | 16 +
test/shock/shock.gfs | 75 +
test/shock/shock.sh | 51 +
test/shore.sh | 1 +
test/shore/convergence.ref | 4 +
test/shore/init.cgd | 1006 +++
test/shore/shore.gfs | 82 +
test/shore/shore.sh | 72 +
test/shore/t160.csv | 102 +
test/shore/t175.csv | 102 +
test/shore/t220.csv | 102 +
test/source.sh | 1 +
test/spurious.sh | 1 +
test/spurious/axi/axi.gfs | 6 +-
test/spurious/axi/convergence.ref | 8 +
test/spurious/axi/kconvergence.ref | 8 +
test/spurious/convergence.ref | 8 +
test/spurious/kconvergence.ref | 8 +
test/spurious/spurious.gfs | 2 +-
test/still.sh | 1 +
test/still/bipolar/bipolar.gfs | 119 +
test/still/bipolar/mesh.gfv | 30 +
test/{cosine/zero.gfv => still/bipolar/p.gfv} | 25 +-
test/still/still.gfs | 64 +
test/still/still.gfv | 75 +
test/strouhal.sh | 1 +
test/strouhal/strouhal.gfs | 4 +
test/strouhal/strouhal.ref | 6 +-
test/swirl.sh | 1 +
test/swirl/analytical | 100 +
test/swirl/swirl.gfs | 159 +
test/template.tex | 149 +-
test/terrain.sh | 1 +
test/terrain/error-h.ref | 4 +
test/terrain/error-t.ref | 8 +
test/terrain/terrain.gfs | 84 +
test/terrain/terrain.sh | 79 +
test/wannier.sh | 1 +
test/wannier/bipolar/bipolar.gfs | 131 +
test/wannier/bipolar/bipolar.sh | 59 +
test/wannier/bipolar/error.ref | 5 +
.../isolines.gfv => wannier/bipolar/mesh.gfv} | 18 +-
test/wannier/error.ref | 6 +
test/{cosine/zero.gfv => wannier/streamlines.gfv} | 23 +-
test/wannier/stretch/error.ref | 5 +
test/wannier/stretch/streamlines.gfv | 39 +
test/wannier/stretch/stretch.gfs | 82 +
test/wannier/wannier.c | 40 +
test/wannier/wannier.gfs | 98 +
test/wannier/wannier.sh | 45 +
test/waves.sh | 1 +
test/waves/adaptive/correlation.ref | 5 +
tools/Makefile.am | 19 +-
tools/Makefile.in | 206 +
tools/darcs2dist | 41 +-
tools/gfs2oogl.c | 17 +-
tools/gfscombine.c | 231 +
tools/gfscompare.c | 59 +-
tools/gfsjoin2.c | 4 +
tools/gfsplot | 64 +
545 files changed, 77268 insertions(+), 4469 deletions(-)
create mode 100644 build_function_gcc
create mode 100644 build_function_libtool
rename configure.in => configure.ac (67%)
copy {doc/tutorial => debian}/Makefile.in (74%)
create mode 100644 debian/patches/03_build_funct.patch
create mode 100644 debian/patches/04_replace_ffmpeg_by_avconv.patch
create mode 100644 debian/tests/control
copy test/conservation/conservation.gfs => debian/tests/testCons (56%)
mode change 100644 => 100755
copy test/hydrostatic/hydrostatic.gfs => debian/tests/testHydro (65%)
mode change 100644 => 100755
copy test/kinetic/kinetic.gfs => debian/tests/testKinetic (82%)
mode change 100644 => 100755
create mode 100755 debian/tests/testPlate
copy test/hydrostatic/quadratic/quadratic.gfs => debian/tests/testQuadr (71%)
mode change 100644 => 100755
create mode 100755 doc/examples/atomisation.sh
create mode 100755 doc/examples/boussinesq.sh
create mode 100755 doc/examples/bubble.sh
create mode 100644 doc/examples/bubble/bubble.gfs
create mode 100644 doc/examples/bubble/bubble.gfv
create mode 100644 doc/examples/bubble/bubble.sh
create mode 100644 doc/examples/bubble/cap/bubble.gfv
create mode 100644 doc/examples/bubble/cap/bubble.sh
create mode 100644 doc/examples/bubble/cap/cap.gfs
create mode 100755 doc/examples/column.sh
create mode 100755 doc/examples/cyclone.sh
create mode 100755 doc/examples/cylinder.sh
create mode 100755 doc/examples/dam.sh
create mode 100755 doc/examples/forcedturbulence.sh
create mode 100755 doc/examples/garden.sh
create mode 100755 doc/examples/hump.sh
create mode 100755 doc/examples/logo.sh
create mode 100755 doc/examples/monai.sh
create mode 100755 doc/examples/plateau.sh
create mode 100755 doc/examples/rt.sh
create mode 100755 doc/examples/ship.sh
create mode 100755 doc/examples/shock.sh
copy test/cosine/zero.gfv => doc/examples/shock/depth.gfv (58%)
copy test/cosine/isolines.gfv => doc/examples/shock/mesh.gfv (53%)
create mode 100644 doc/examples/shock/shock.gfs
create mode 100755 doc/examples/starting.sh
create mode 100644 doc/examples/starting/n2414.dat
create mode 100644 doc/examples/starting/starting.gfs
copy test/cosine/zero.gfv => doc/examples/starting/starting.gfv (55%)
create mode 100644 doc/examples/starting/starting.sh
create mode 100755 doc/examples/tangaroa.sh
create mode 100755 doc/examples/tides.sh
create mode 100755 doc/examples/tsunami.sh
create mode 100755 doc/examples/viscmix.sh
create mode 100644 doc/examples/viscmix/run.sh
create mode 100644 doc/examples/viscmix/viscmix.gfs
create mode 100644 doc/examples/viscmix/viscmix.gfv
create mode 100755 doc/examples/wingtip.sh
create mode 100644 doc/examples/wingtip/n2414.dat
create mode 100644 doc/examples/wingtip/wingtip.gfs
create mode 100644 doc/examples/wingtip/wingtip.gfv
create mode 100644 doc/examples/wingtip/wingtip.sh
create mode 100644 doc/figures/diffusion.tm
create mode 100644 doc/figures/viscous-metric-3D.tm
create mode 100644 doc/figures/viscous-metric.tm
create mode 100644 doc/gerris.bib
copy modules/{kdt => RStarTree}/Makefile.in (56%)
create mode 100644 modules/RStarTree/RSTBase.h
create mode 100644 modules/RStarTree/RStarTree.c
create mode 100644 modules/RStarTree/RStarTree.h
copy modules/{agmg.mod => agmg.c} (100%)
create mode 100644 modules/bubbles.c
create mode 100644 modules/culvert.c
create mode 100644 modules/culvert/Makefile.am
copy modules/{kdt => culvert}/Makefile.in (56%)
create mode 100644 modules/culvert/boyd87.c
create mode 100644 modules/culvert/boyd87.h
create mode 100644 modules/culvert/check_inlet.c
create mode 100644 modules/culvert/check_outlet.c
create mode 100644 modules/culvert/discharge_table.c
create mode 100644 modules/df3.c
create mode 100644 modules/electrohydro.c
copy modules/{kdt => fes2004}/Makefile.in (55%)
create mode 100644 modules/fes2004/fes2004_extraction.c
create mode 100644 modules/fes2004/fes2004_io.c
create mode 100644 modules/fes2004/fes2004_kernel.c
create mode 100644 modules/fes2004/fes2004_lib.h
create mode 100644 modules/fes2004/fes2004_prediction.c
create mode 100644 modules/fft.c
create mode 100644 modules/hypre.c
copy modules/kdt/{xyz2kdt.c => kdt2kdt.c} (68%)
create mode 100644 modules/layered.c
copy modules/{lis.mod => lis.c} (100%)
rename modules/{map.mod => map.c} (86%)
create mode 100644 modules/ode.c
create mode 100644 modules/okada.c
create mode 100644 modules/particulatecommon.c
create mode 100644 modules/particulatecommon.h
copy src/unstructured.h => modules/particulates.c (55%)
copy modules/{kdt/xyz2kdt.c => rsurface2kdt.c} (62%)
delete mode 100644 modules/rsurfacedraw.c
delete mode 100644 modules/rsurfacequery.c
create mode 100644 modules/skewsymmetric.c
rename modules/{stokes.mod => stokes.c} (88%)
rename modules/{terrain.mod => terrain.c} (89%)
rename modules/{tide.mod => tide.c} (97%)
create mode 100644 modules/topics.c
rename modules/{wavewatch.mod => wavewatch.c} (95%)
delete mode 100644 src/gfs-config.in
create mode 100644 src/open_memstream.c
create mode 100644 src/verify.h
create mode 100755 test/advection.sh
create mode 100755 test/annulus.sh
create mode 100644 test/annulus/annulus.gfs
create mode 100644 test/annulus/annulus.sh
create mode 100644 test/annulus/error.ref
create mode 100755 test/axi.sh
create mode 100755 test/axiadvection.sh
create mode 100755 test/boundaries.sh
create mode 100755 test/bump.sh
copy test/bump/{norms.ref => norms-explicit.ref} (100%)
create mode 100644 test/bump/norms-implicit.ref
create mode 100755 test/capwave.sh
create mode 100755 test/channel.sh
create mode 100755 test/circle.sh
create mode 100755 test/conservation.sh
create mode 100755 test/coriolis.sh
create mode 100755 test/cosine.sh
create mode 100755 test/couette.sh
create mode 100755 test/cylinder.sh
create mode 100755 test/debye.sh
create mode 100644 test/debye/analytical
create mode 100644 test/debye/debye.gfs
create mode 100644 test/debye/debye.sh
create mode 100644 test/debye/points
create mode 100755 test/diffusion.sh
create mode 100644 test/diffusion/concentration/concentration.gfs
create mode 100644 test/diffusion/concentration/concentration.sh
create mode 100755 test/dumbell.sh
create mode 100755 test/electro.sh
create mode 100755 test/gaussian.sh
create mode 100755 test/geo.sh
create mode 100644 test/geo/river/e.ref
copy test/geo/{ => river}/geo.gfv (100%)
copy test/geo/{ => river}/geo.sh (53%)
create mode 100644 test/geo/river/river.gfs
create mode 100755 test/groundwater.sh
create mode 100644 test/groundwater/U.ref
create mode 100644 test/groundwater/groundwater.gfs
create mode 100644 test/groundwater/groundwater.gfv
create mode 100644 test/groundwater/groundwater.sh
create mode 100644 test/groundwater/p.ref
create mode 100644 test/groundwater/piecewise/U.ref
create mode 100644 test/groundwater/piecewise/p.ref
create mode 100644 test/groundwater/piecewise/piecewise.gfs
create mode 100644 test/groundwater/piecewise/piecewise.gfv
create mode 100755 test/harmonic.sh
create mode 100755 test/height.sh
create mode 100644 test/height/height.gfs
create mode 100644 test/height/height.sh
create mode 100644 test/height/height1.gfs
create mode 100644 test/height/height2.gfs
create mode 100644 test/height/height3.gfs
create mode 100644 test/height/height4.gfs
create mode 100644 test/height/height5.gfs
create mode 100755 test/hexagon.sh
create mode 100755 test/hydrostatic.sh
create mode 100755 test/injectionaxi.sh
create mode 100644 test/injectionaxi/injectionaxi.gfs
create mode 100755 test/kinetic.sh
create mode 100755 test/lake.sh
create mode 100644 test/lake/river/error.ref
create mode 100644 test/lake/river/river.gfs
create mode 100644 test/lake/river/river.sh
create mode 100644 test/lake/stratified/error.ref
create mode 100644 test/lake/stratified/field.awk
create mode 100644 test/lake/stratified/stratified.gfs
create mode 100644 test/lake/stratified/stratified.sh
create mode 100644 test/lake/stratified/thermo.awk
create mode 100755 test/lid.sh
copy test/{cosine => lid/metric}/isolines.gfv (51%)
copy test/lid/{stretch/stretch.gfs => metric/metric.gfs} (63%)
copy test/lid/{stretch => metric}/xprof.ghia (100%)
copy test/lid/{stretch => metric}/xprofile (100%)
copy test/lid/{stretch => metric}/yprof.ghia (100%)
copy test/lid/{stretch => metric}/yprofile (100%)
create mode 100755 test/lonlat.sh
copy test/lonlat/{lonlat.gfs => cubed/cubed.gfs} (55%)
copy test/{cosine => lonlat/cubed}/isolines.gfv (69%)
create mode 100755 test/merging.sh
create mode 100755 test/nonlinear.sh
create mode 100644 test/nonlinear/error-1.ref
create mode 100644 test/nonlinear/error-ocean-1.ref
copy test/{cosine/isolines.gfv => nonlinear/error-ocean.gfv} (53%)
create mode 100644 test/nonlinear/error-river-1.ref
copy test/{cosine/isolines.gfv => nonlinear/error.gfv} (56%)
create mode 100644 test/nonlinear/nonlinear.gfs
create mode 100644 test/nonlinear/nonlinear.sh
create mode 100644 test/nonlinear/ocean.gfs
create mode 100644 test/nonlinear/river.gfs
create mode 100755 test/nz.sh
create mode 100755 test/oscillation.sh
create mode 100755 test/parabola.sh
create mode 100644 test/parabola/solid/error.ref
copy test/parabola/{parabola.gfs => solid/solid.gfs} (52%)
create mode 100755 test/periodic.sh
create mode 100755 test/planar.sh
create mode 100755 test/plate.sh
create mode 100755 test/plateau.sh
create mode 100644 test/plateau/plateau.gfs
create mode 100644 test/plateau/plateau.gfv
create mode 100644 test/plateau/zoom.gfv
create mode 100755 test/poiseuille.sh
create mode 100644 test/poiseuille/metric/error.ref
copy test/poiseuille/{poiseuille.gfs => metric/metric.gfs} (71%)
create mode 100644 test/poiseuille/river/error.ref
create mode 100644 test/poiseuille/river/river.gfs
create mode 100644 test/poiseuille/river/river.sh
create mode 100755 test/poisson.sh
create mode 100755 test/reynolds.sh
create mode 100644 test/reynolds/skew/div5.ref
create mode 100644 test/reynolds/skew/div6.ref
create mode 100644 test/reynolds/skew/div7.ref
create mode 100644 test/reynolds/skew/reynolds.ref
copy test/reynolds/{box/box.gfs => skew/skew.gfs} (51%)
copy test/reynolds/{reynolds.sh => skew/skew.sh} (58%)
create mode 100644 test/reynolds/skewbox/error.ref
create mode 100644 test/reynolds/skewbox/skew.sh
create mode 100644 test/reynolds/skewbox/skewbox.gfs
create mode 100644 test/reynolds/stream/div5.ref
create mode 100644 test/reynolds/stream/div6.ref
create mode 100644 test/reynolds/stream/div7.ref
create mode 100644 test/reynolds/stream/reynolds.ref
create mode 100644 test/reynolds/stream/stream.gfs
create mode 100755 test/rossby.sh
create mode 100644 test/rossby/ec-6
create mode 100644 test/rossby/eh-4.ref
create mode 100644 test/rossby/eh-5.ref
create mode 100644 test/rossby/eh-6.ref
copy test/{cosine/isolines.gfv => rossby/ehm.gfv} (58%)
copy test/{cosine/isolines.gfv => rossby/ehp.gfv} (67%)
copy test/{cosine/zero.gfv => rossby/h.gfv} (59%)
copy test/{cosine/zero.gfv => rossby/href.gfv} (61%)
create mode 100644 test/rossby/ocean/ec-6
create mode 100644 test/rossby/ocean/eh-4.ref
create mode 100644 test/rossby/ocean/eh-5.ref
create mode 100644 test/rossby/ocean/eh-6.ref
copy test/{cosine/isolines.gfv => rossby/ocean/ehm.gfv} (58%)
copy test/{cosine/isolines.gfv => rossby/ocean/ehp.gfv} (67%)
copy test/{cosine/zero.gfv => rossby/ocean/h.gfv} (59%)
copy test/{cosine/zero.gfv => rossby/ocean/href.gfv} (62%)
create mode 100644 test/rossby/ocean/ocean.gfs
create mode 100644 test/rossby/river/ec-6
create mode 100644 test/rossby/river/eh-4.ref
create mode 100644 test/rossby/river/eh-5.ref
create mode 100644 test/rossby/river/eh-6.ref
copy test/{cosine/isolines.gfv => rossby/river/ehm.gfv} (58%)
copy test/{cosine/isolines.gfv => rossby/river/ehp.gfv} (67%)
copy test/{cosine/zero.gfv => rossby/river/h.gfv} (60%)
copy test/{cosine/zero.gfv => rossby/river/href.gfv} (61%)
create mode 100644 test/rossby/river/river.gfs
create mode 100644 test/rossby/rossby.gfs
create mode 100644 test/rossby/rossby.sh
create mode 100755 test/rotate.sh
create mode 100644 test/rotate/cells.gfv
create mode 100644 test/rotate/error.n1
create mode 100644 test/rotate/error.ref
create mode 100644 test/rotate/n1-0.gnu
create mode 100644 test/rotate/n1-1.gnu
create mode 100644 test/rotate/n1-2.gnu
create mode 100644 test/rotate/n1-5.gnu
create mode 100644 test/rotate/rotate.gfs
create mode 100644 test/rotate/rotate.gfv
create mode 100755 test/sessile.sh
create mode 100644 test/sessile/error-6.ref
create mode 100644 test/sessile/sessile.gfs
create mode 100644 test/sessile/sessile.sh
create mode 100755 test/shear.sh
create mode 100644 test/shear/concentration/concentration.gfs
create mode 100644 test/shear/concentration/concentration.sh
create mode 100644 test/shear/concentration/convergence.ref
create mode 100644 test/shear/concentration/convergence1.ref
create mode 100644 test/shear/concentration/convergence2.ref
create mode 100644 test/shear/concentration/t1.gfv
create mode 100644 test/shear/concentration/t2.gfv
create mode 100755 test/shock.sh
create mode 100644 test/shock/error.ref
create mode 100644 test/shock/layered/field.awk
create mode 100644 test/shock/layered/layered.gfs
create mode 100644 test/shock/layered/layered.sh
create mode 100644 test/shock/layered/prof.ref
create mode 100644 test/shock/layered/uprof.awk
create mode 100644 test/shock/shock.gfs
create mode 100644 test/shock/shock.sh
create mode 100755 test/shore.sh
create mode 100644 test/shore/convergence.ref
create mode 100644 test/shore/init.cgd
create mode 100644 test/shore/shore.gfs
create mode 100644 test/shore/shore.sh
create mode 100644 test/shore/t160.csv
create mode 100644 test/shore/t175.csv
create mode 100644 test/shore/t220.csv
create mode 100755 test/source.sh
create mode 100755 test/spurious.sh
create mode 100755 test/still.sh
create mode 100644 test/still/bipolar/bipolar.gfs
create mode 100644 test/still/bipolar/mesh.gfv
copy test/{cosine/zero.gfv => still/bipolar/p.gfv} (50%)
create mode 100644 test/still/still.gfs
create mode 100644 test/still/still.gfv
create mode 100755 test/strouhal.sh
create mode 100755 test/swirl.sh
create mode 100644 test/swirl/analytical
create mode 100644 test/swirl/swirl.gfs
create mode 100755 test/terrain.sh
create mode 100644 test/terrain/error-h.ref
create mode 100644 test/terrain/error-t.ref
create mode 100644 test/terrain/terrain.gfs
create mode 100644 test/terrain/terrain.sh
create mode 100755 test/wannier.sh
create mode 100644 test/wannier/bipolar/bipolar.gfs
create mode 100644 test/wannier/bipolar/bipolar.sh
create mode 100644 test/wannier/bipolar/error.ref
copy test/{cosine/isolines.gfv => wannier/bipolar/mesh.gfv} (59%)
create mode 100644 test/wannier/error.ref
copy test/{cosine/zero.gfv => wannier/streamlines.gfv} (51%)
create mode 100644 test/wannier/stretch/error.ref
create mode 100644 test/wannier/stretch/streamlines.gfv
create mode 100644 test/wannier/stretch/stretch.gfs
create mode 100644 test/wannier/wannier.c
create mode 100644 test/wannier/wannier.gfs
create mode 100644 test/wannier/wannier.sh
create mode 100755 test/waves.sh
create mode 100644 tools/gfscombine.c
create mode 100644 tools/gfsplot
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