[liggghts] branch master updated (f01a307 -> ff040f2)

Anton Gladky gladk at moszumanska.debian.org
Thu Mar 20 21:39:18 UTC 2014


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gladk pushed a change to branch master
in repository liggghts.

      from  f01a307   Minor fix.
      adds  96c3d6e   Imported Upstream version 3.0.0+repack
       new  b7cc4c3   Merge tag 'upstream/3.0.0+repack'
       new  8bc06d5   Remove lib/ and src/USER-MISC. (Closes: #742026)
       new  ff040f2   Update changelog.

The 3 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 debian/README.source                               |    2 +
 debian/changelog                                   |    7 +
 lib/README                                         |   29 -
 lib/atc/ATC_Coupling.cpp                           | 2215 -----------
 lib/atc/ATC_Coupling.h                             |  456 ---
 lib/atc/ATC_CouplingEnergy.cpp                     |  412 --
 lib/atc/ATC_CouplingEnergy.h                       |   82 -
 lib/atc/ATC_CouplingMass.cpp                       |  285 --
 lib/atc/ATC_CouplingMass.h                         |   88 -
 lib/atc/ATC_CouplingMomentum.cpp                   |  453 ---
 lib/atc/ATC_CouplingMomentum.h                     |   84 -
 lib/atc/ATC_CouplingMomentumEnergy.cpp             |  508 ---
 lib/atc/ATC_CouplingMomentumEnergy.h               |   83 -
 lib/atc/ATC_Error.h                                |   53 -
 lib/atc/ATC_Method.cpp                             | 2310 ------------
 lib/atc/ATC_Method.h                               |  863 -----
 lib/atc/ATC_Transfer.cpp                           | 2011 ----------
 lib/atc/ATC_Transfer.h                             |  256 --
 lib/atc/ATC_TransferKernel.cpp                     |  485 ---
 lib/atc/ATC_TransferKernel.h                       |   53 -
 lib/atc/ATC_TransferPartitionOfUnity.cpp           |  506 ---
 lib/atc/ATC_TransferPartitionOfUnity.h             |   59 -
 lib/atc/ATC_TypeDefs.h                             |  626 ---
 lib/atc/Array.h                                    |  320 --
 lib/atc/Array2D.h                                  |  194 -
 lib/atc/AtomToMoleculeTransfer.cpp                 |  225 --
 lib/atc/AtomToMoleculeTransfer.h                   |  239 --
 lib/atc/AtomicRegulator.cpp                        |  987 -----
 lib/atc/AtomicRegulator.h                          |  625 ---
 lib/atc/BodyForce.cpp                              |   37 -
 lib/atc/BodyForce.h                                |   68 -
 lib/atc/CBLattice.cpp                              |  204 -
 lib/atc/CBLattice.h                                |   97 -
 lib/atc/CG.h                                       |   84 -
 lib/atc/CauchyBorn.cpp                             |  572 ---
 lib/atc/CauchyBorn.h                               |  113 -
 lib/atc/CbEam.h                                    |  209 -
 lib/atc/CbLjCut.h                                  |   62 -
 lib/atc/CbLjSmoothLinear.h                         |   88 -
 lib/atc/CbPotential.cpp                            |   88 -
 lib/atc/CbPotential.h                              |   70 -
 lib/atc/ChargeRegulator.cpp                        |  735 ----
 lib/atc/ChargeRegulator.h                          |  282 --
 lib/atc/CloneVector.h                              |  253 --
 lib/atc/ConcentrationRegulator.cpp                 |  635 ----
 lib/atc/ConcentrationRegulator.h                   |  216 --
 lib/atc/DenseMatrix.h                              |  417 --
 lib/atc/DenseVector.h                              |  168 -
 lib/atc/DependencyManager.h                        |  326 --
 lib/atc/DiagonalMatrix.h                           |  506 ---
 lib/atc/DislocationExtractor.h                     |  434 ---
 lib/atc/ElasticTimeIntegrator.cpp                  |  843 -----
 lib/atc/ElasticTimeIntegrator.h                    |  409 --
 lib/atc/ElectronChargeDensity.cpp                  |  131 -
 lib/atc/ElectronChargeDensity.h                    |  269 --
 lib/atc/ElectronDragPower.cpp                      |   75 -
 lib/atc/ElectronDragPower.h                        |   71 -
 lib/atc/ElectronFlux.cpp                           |  101 -
 lib/atc/ElectronFlux.h                             |  224 --
 lib/atc/ElectronHeatCapacity.cpp                   |   78 -
 lib/atc/ElectronHeatCapacity.h                     |  225 --
 lib/atc/ElectronHeatFlux.cpp                       |   95 -
 lib/atc/ElectronHeatFlux.h                         |  178 -
 lib/atc/ElectronPhononExchange.cpp                 |  119 -
 lib/atc/ElectronPhononExchange.h                   |  116 -
 lib/atc/ExtrinsicModel.cpp                         |  377 --
 lib/atc/ExtrinsicModel.h                           |  311 --
 lib/atc/ExtrinsicModelDriftDiffusion.cpp           |  558 ---
 lib/atc/ExtrinsicModelDriftDiffusion.h             |  187 -
 lib/atc/ExtrinsicModelElectrostatic.cpp            | 1014 -----
 lib/atc/ExtrinsicModelElectrostatic.h              |  187 -
 lib/atc/ExtrinsicModelTwoTemperature.cpp           |  270 --
 lib/atc/ExtrinsicModelTwoTemperature.h             |   79 -
 lib/atc/FE_Element.cpp                             |  747 ----
 lib/atc/FE_Element.h                               |  357 --
 lib/atc/FE_Engine.cpp                              | 2713 -------------
 lib/atc/FE_Engine.h                                |  556 ---
 lib/atc/FE_Interpolate.cpp                         |  993 -----
 lib/atc/FE_Interpolate.h                           |  263 --
 lib/atc/FE_Mesh.cpp                                | 3045 ---------------
 lib/atc/FE_Mesh.h                                  |  704 ----
 lib/atc/FE_Quadrature.h                            |  709 ----
 lib/atc/FieldEulerIntegrator.cpp                   |  102 -
 lib/atc/FieldEulerIntegrator.h                     |  138 -
 lib/atc/FieldManager.cpp                           |  548 ---
 lib/atc/FieldManager.h                             |  132 -
 lib/atc/Function.cpp                               |  548 ---
 lib/atc/Function.h                                 |  428 ---
 lib/atc/FundamentalAtomicQuantity.cpp              |  152 -
 lib/atc/FundamentalAtomicQuantity.h                |  254 --
 lib/atc/GMRES.h                                    |  155 -
 lib/atc/GhostManager.cpp                           |  504 ---
 lib/atc/GhostManager.h                             |  327 --
 lib/atc/ImplicitSolveOperator.cpp                  |  160 -
 lib/atc/ImplicitSolveOperator.h                    |  129 -
 lib/atc/InterscaleOperators.cpp                    |  666 ----
 lib/atc/InterscaleOperators.h                      |  465 ---
 lib/atc/KD_Tree.cpp                                |  164 -
 lib/atc/KD_Tree.h                                  |   89 -
 lib/atc/KernelFunction.cpp                         |  726 ----
 lib/atc/KernelFunction.h                           |  255 --
 lib/atc/KinetoThermostat.cpp                       |  436 ---
 lib/atc/KinetoThermostat.h                         |  689 ----
 lib/atc/Kinetostat.cpp                             | 2246 -----------
 lib/atc/Kinetostat.h                               |  809 ----
 lib/atc/LammpsInterface.cpp                        | 1534 --------
 lib/atc/LammpsInterface.h                          |  711 ----
 lib/atc/LinearSolver.cpp                           |  563 ---
 lib/atc/LinearSolver.h                             |  182 -
 lib/atc/MPI_Wrappers.cpp                           |  333 --
 lib/atc/MPI_Wrappers.h                             |   45 -
 lib/atc/Makefile.g++                               |   51 -
 lib/atc/Makefile.icc                               |   51 -
 lib/atc/Makefile.lammps                            |    5 -
 lib/atc/Makefile.lammps.empty                      |    5 -
 lib/atc/Makefile.lammps.installed                  |    5 -
 lib/atc/Makefile.lammps.linalg                     |    6 -
 lib/atc/Makefile.mingw32-cross                     |   66 -
 lib/atc/Makefile.mingw32-cross-mpi                 |   67 -
 lib/atc/Makefile.mingw64-cross                     |   66 -
 lib/atc/Makefile.mingw64-cross-mpi                 |   67 -
 lib/atc/Makefile.mpic++                            |   29 -
 lib/atc/Makefile.serial                            |   51 -
 lib/atc/Material.cpp                               |  776 ----
 lib/atc/Material.h                                 |  248 --
 lib/atc/Matrix.cpp                                 |  303 --
 lib/atc/Matrix.h                                   | 1019 -----
 lib/atc/MatrixDef.h                                |  192 -
 lib/atc/MatrixLibrary.h                            |   38 -
 lib/atc/MeshReader.cpp                             |  223 --
 lib/atc/MeshReader.h                               |   52 -
 lib/atc/MoleculeSet.cpp                            |  292 --
 lib/atc/MoleculeSet.h                              |  158 -
 lib/atc/NonLinearSolver.cpp                        |  114 -
 lib/atc/NonLinearSolver.h                          |  105 -
 lib/atc/OutputManager.cpp                          |  889 -----
 lib/atc/OutputManager.h                            |  145 -
 lib/atc/PaqAtcUtility.cpp                          |   89 -
 lib/atc/PaqAtcUtility.h                            |   65 -
 lib/atc/ParDenseMatrix.h                           |  172 -
 lib/atc/ParDiagonalMatrix.cpp                      |   93 -
 lib/atc/ParDiagonalMatrix.h                        |   38 -
 lib/atc/ParSparseMatrix.cpp                        |  302 --
 lib/atc/ParSparseMatrix.h                          |  150 -
 lib/atc/PerAtomQuantity-inl.h                      |  801 ----
 lib/atc/PerAtomQuantity.h                          | 1469 --------
 lib/atc/PerAtomQuantityLibrary.cpp                 | 2383 ------------
 lib/atc/PerAtomQuantityLibrary.h                   | 1727 ---------
 lib/atc/PerPairQuantity.cpp                        |  370 --
 lib/atc/PerPairQuantity.h                          |  425 ---
 lib/atc/PhysicsModel.cpp                           |  443 ---
 lib/atc/PhysicsModel.h                             |  321 --
 lib/atc/PoissonSolver.cpp                          |  216 --
 lib/atc/PoissonSolver.h                            |  137 -
 lib/atc/PolynomialSolver.cpp                       |  139 -
 lib/atc/PolynomialSolver.h                         |   14 -
 lib/atc/PrescribedDataManager.cpp                  |  579 ---
 lib/atc/PrescribedDataManager.h                    |  393 --
 lib/atc/Quadrature.cpp                             |   81 -
 lib/atc/Quadrature.h                               |   26 -
 lib/atc/README                                     |   59 -
 lib/atc/SchrodingerSolver.cpp                      |  559 ---
 lib/atc/SchrodingerSolver.h                        |  204 -
 lib/atc/ShapeFunction.h                            |  521 ---
 lib/atc/SparseMatrix-inl.h                         | 1066 ------
 lib/atc/SparseMatrix.h                             |  299 --
 lib/atc/SparseVector-inl.h                         |  228 --
 lib/atc/SparseVector.h                             |  103 -
 lib/atc/SpeciesTimeIntegrator.cpp                  |  251 --
 lib/atc/SpeciesTimeIntegrator.h                    |  177 -
 lib/atc/Stress.cpp                                 |  620 ---
 lib/atc/Stress.h                                   |  212 --
 lib/atc/ThermalTimeIntegrator.cpp                  |  698 ----
 lib/atc/ThermalTimeIntegrator.h                    |  348 --
 lib/atc/Thermostat.cpp                             | 2381 ------------
 lib/atc/Thermostat.h                               |  925 -----
 lib/atc/TimeFilter.cpp                             |  382 --
 lib/atc/TimeFilter.h                               |  769 ----
 lib/atc/TimeIntegrator.cpp                         |  303 --
 lib/atc/TimeIntegrator.h                           |  380 --
 lib/atc/TransferLibrary.cpp                        | 2008 ----------
 lib/atc/TransferLibrary.h                          | 1724 ---------
 lib/atc/TransferOperator.cpp                       |  911 -----
 lib/atc/TransferOperator.h                         | 1145 ------
 lib/atc/Utility.h                                  |  305 --
 lib/atc/Vector.cpp                                 |   34 -
 lib/atc/Vector.h                                   |  206 -
 lib/atc/ViscousStress.cpp                          |   82 -
 lib/atc/ViscousStress.h                            |   64 -
 lib/atc/VoigtOperations.h                          |  265 --
 lib/atc/WeakEquation.h                             |  108 -
 lib/atc/WeakEquationChargeDiffusion.cpp            |   39 -
 lib/atc/WeakEquationChargeDiffusion.h              |   41 -
 lib/atc/WeakEquationDiffusion.cpp                  |   50 -
 lib/atc/WeakEquationDiffusion.h                    |   50 -
 lib/atc/WeakEquationElectronContinuity.cpp         |  105 -
 lib/atc/WeakEquationElectronContinuity.h           |  108 -
 lib/atc/WeakEquationElectronMomentum.cpp           |  185 -
 lib/atc/WeakEquationElectronMomentum.h             |  117 -
 lib/atc/WeakEquationElectronTemperature.cpp        |  227 --
 lib/atc/WeakEquationElectronTemperature.h          |  180 -
 lib/atc/WeakEquationMassDiffusion.cpp              |   50 -
 lib/atc/WeakEquationMassDiffusion.h                |   52 -
 lib/atc/WeakEquationMomentum.cpp                   |  157 -
 lib/atc/WeakEquationMomentum.h                     |  174 -
 lib/atc/WeakEquationPhononTemperature.cpp          |  124 -
 lib/atc/WeakEquationPhononTemperature.h            |  116 -
 lib/atc/WeakEquationPoisson.cpp                    |   94 -
 lib/atc/WeakEquationPoisson.h                      |  116 -
 lib/atc/WeakEquationSchrodinger.cpp                |   47 -
 lib/atc/WeakEquationSchrodinger.h                  |   52 -
 lib/awpmd/Makefile.lammps.empty                    |    5 -
 lib/awpmd/Makefile.lammps.installed                |    5 -
 lib/awpmd/Makefile.lammps.linalg                   |    5 -
 lib/awpmd/Makefile.mingw32-cross                   |   80 -
 lib/awpmd/Makefile.mingw32-cross-mpi               |   13 -
 lib/awpmd/Makefile.mingw64-cross                   |   79 -
 lib/awpmd/Makefile.mingw64-cross-mpi               |   13 -
 lib/awpmd/Makefile.openmpi                         |   69 -
 lib/awpmd/README                                   |   62 -
 lib/awpmd/ivutils/include/cerf.h                   |  245 --
 lib/awpmd/ivutils/include/cvector_3.h              |   75 -
 lib/awpmd/ivutils/include/erf.h                    |   19 -
 lib/awpmd/ivutils/include/lapack_inter.h           |   53 -
 lib/awpmd/ivutils/include/logexc.h                 |  316 --
 lib/awpmd/ivutils/include/pairhash.h               |  683 ----
 lib/awpmd/ivutils/include/refobj.h                 |  470 ---
 lib/awpmd/ivutils/include/vector_3.h               |  707 ----
 lib/awpmd/ivutils/include/wavepacket.h             |  244 --
 lib/awpmd/ivutils/src/logexc.cpp                   |   25 -
 lib/awpmd/license/COPYING                          |  340 --
 lib/awpmd/license/awpmd_license.txt                |    8 -
 lib/awpmd/license/wx_license.txt                   |   53 -
 lib/awpmd/systems/interact/TCP/tcpdefs.h           |   17 -
 lib/awpmd/systems/interact/TCP/wpmd.cpp            |  890 -----
 lib/awpmd/systems/interact/TCP/wpmd.h              |  658 ----
 lib/awpmd/systems/interact/TCP/wpmd_split.cpp      | 1325 -------
 lib/awpmd/systems/interact/TCP/wpmd_split.h        |  204 -
 lib/colvars/Makefile.fermi                         |  101 -
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 lib/colvars/README                                 |   68 -
 lib/colvars/colvar.cpp                             | 1691 ---------
 lib/colvars/colvar.h                               |  581 ---
 lib/colvars/colvaratoms.cpp                        |  856 -----
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 lib/colvars/colvarbias.cpp                         |  590 ---
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 lib/colvars/colvarbias_abf.cpp                     |  518 ---
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 lib/colvars/colvarbias_meta.cpp                    | 1717 ---------
 lib/colvars/colvarbias_meta.h                      |  425 ---
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 lib/colvars/colvarcomp_angles.cpp                  |  377 --
 lib/colvars/colvarcomp_coordnums.cpp               |  359 --
 lib/colvars/colvarcomp_distances.cpp               | 1150 ------
 lib/colvars/colvarcomp_protein.cpp                 |  385 --
 lib/colvars/colvarcomp_rotations.cpp               |  311 --
 lib/colvars/colvargrid.cpp                         |  217 --
 lib/colvars/colvargrid.h                           | 1188 ------
 lib/colvars/colvarmodule.cpp                       | 1502 --------
 lib/colvars/colvarmodule.h                         |  531 ---
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 lib/colvars/colvarparse.h                          |  201 -
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 lib/cuda/Makefile                                  |    4 -
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 lib/cuda/README                                    |   59 -
 lib/cuda/atom_vec_angle_cuda.cu                    |   85 -
 lib/cuda/atom_vec_angle_cuda_cu.h                  |   15 -
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 lib/cuda/atom_vec_cuda.cu                          |  628 ---
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