[mlpack] 01/03: Merge tag 'upstream/1.0.10'

Barak A. Pearlmutter barak+git at cs.nuim.ie
Tue Sep 9 13:12:34 UTC 2014


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bap pushed a commit to branch master
in repository mlpack.

commit 1afef21fae26d3ab1791ddefffcf54c8182a2ae0
Merge: d98910a 3503109
Author: Barak A. Pearlmutter <barak+git at cs.nuim.ie>
Date:   Tue Sep 9 13:41:30 2014 +0100

    Merge tag 'upstream/1.0.10'
    
    Upstream version 1.0.10

 CMake/ARMA_FindACML.cmake                          |  37 ++++
 CMake/ARMA_FindACMLMP.cmake                        |  37 ++++
 CMake/ARMA_FindARPACK.cmake                        |  39 ++++
 CMake/ARMA_FindBLAS.cmake                          |  37 ++++
 CMake/ARMA_FindCBLAS.cmake                         |  47 +++++
 CMake/ARMA_FindCLAPACK.cmake                       |  48 +++++
 CMake/ARMA_FindLAPACK.cmake                        |  37 ++++
 CMake/ARMA_FindMKL.cmake                           |  49 +++++
 CMake/ARMA_FindOpenBLAS.cmake                      |  37 ++++
 CMake/FindArmadillo.cmake                          | 220 ++++++++++++++++++---
 CMake/LICENSE.txt                                  |   8 +
 Doxyfile                                           |   2 +-
 HISTORY.txt                                        |  11 ++
 doc/guide/build.hpp                                |   4 +-
 doc/guide/version.hpp                              |   2 +-
 src/mlpack/core.hpp                                |   2 +-
 src/mlpack/core/data/load.hpp                      |   2 +-
 src/mlpack/core/data/load_impl.hpp                 |   2 +-
 src/mlpack/core/data/normalize_labels.hpp          |   2 +-
 src/mlpack/core/data/normalize_labels_impl.hpp     |   2 +-
 src/mlpack/core/data/save.hpp                      |   2 +-
 src/mlpack/core/data/save_impl.hpp                 |   2 +-
 src/mlpack/core/dists/discrete_distribution.cpp    |   2 +-
 src/mlpack/core/dists/discrete_distribution.hpp    |   2 +-
 src/mlpack/core/dists/gaussian_distribution.cpp    |   2 +-
 src/mlpack/core/dists/gaussian_distribution.hpp    |   2 +-
 src/mlpack/core/dists/laplace_distribution.cpp     |   2 +-
 src/mlpack/core/dists/laplace_distribution.hpp     |   2 +-
 src/mlpack/core/kernels/cosine_distance.hpp        |   2 +-
 src/mlpack/core/kernels/cosine_distance_impl.hpp   |   2 +-
 src/mlpack/core/kernels/epanechnikov_kernel.cpp    |   2 +-
 src/mlpack/core/kernels/epanechnikov_kernel.hpp    |   2 +-
 .../core/kernels/epanechnikov_kernel_impl.hpp      |   2 +-
 src/mlpack/core/kernels/example_kernel.hpp         |   2 +-
 src/mlpack/core/kernels/gaussian_kernel.hpp        |   2 +-
 .../core/kernels/hyperbolic_tangent_kernel.hpp     |   2 +-
 src/mlpack/core/kernels/kernel_traits.hpp          |   2 +-
 src/mlpack/core/kernels/laplacian_kernel.hpp       |   2 +-
 src/mlpack/core/kernels/linear_kernel.hpp          |   2 +-
 src/mlpack/core/kernels/polynomial_kernel.hpp      |   2 +-
 .../core/kernels/pspectrum_string_kernel.cpp       |   2 +-
 .../core/kernels/pspectrum_string_kernel.hpp       |   2 +-
 .../core/kernels/pspectrum_string_kernel_impl.hpp  |   2 +-
 src/mlpack/core/kernels/spherical_kernel.hpp       |   2 +-
 src/mlpack/core/kernels/triangular_kernel.hpp      |   2 +-
 src/mlpack/core/math/clamp.hpp                     |   2 +-
 src/mlpack/core/math/lin_alg.cpp                   |   2 +-
 src/mlpack/core/math/lin_alg.hpp                   |   2 +-
 src/mlpack/core/math/random.cpp                    |   2 +-
 src/mlpack/core/math/random.hpp                    |   2 +-
 src/mlpack/core/math/range.hpp                     |   2 +-
 src/mlpack/core/math/range_impl.hpp                |   2 +-
 src/mlpack/core/math/round.hpp                     |   2 +-
 src/mlpack/core/metrics/ip_metric.hpp              |   2 +-
 src/mlpack/core/metrics/ip_metric_impl.hpp         |   2 +-
 src/mlpack/core/metrics/lmetric.hpp                |   2 +-
 src/mlpack/core/metrics/lmetric_impl.hpp           |   2 +-
 src/mlpack/core/metrics/mahalanobis_distance.hpp   |   2 +-
 .../core/metrics/mahalanobis_distance_impl.hpp     |   2 +-
 .../optimizers/aug_lagrangian/aug_lagrangian.hpp   |   2 +-
 .../aug_lagrangian/aug_lagrangian_function.hpp     |   2 +-
 .../aug_lagrangian_function_impl.hpp               |   2 +-
 .../aug_lagrangian/aug_lagrangian_impl.hpp         |   2 +-
 .../aug_lagrangian_test_functions.cpp              |   2 +-
 .../aug_lagrangian_test_functions.hpp              |   2 +-
 src/mlpack/core/optimizers/lbfgs/lbfgs.hpp         |   2 +-
 src/mlpack/core/optimizers/lbfgs/lbfgs_impl.hpp    |   2 +-
 .../core/optimizers/lbfgs/test_functions.cpp       |   2 +-
 .../core/optimizers/lbfgs/test_functions.hpp       |   2 +-
 src/mlpack/core/optimizers/lrsdp/lrsdp.cpp         |   2 +-
 src/mlpack/core/optimizers/lrsdp/lrsdp.hpp         |   2 +-
 .../core/optimizers/lrsdp/lrsdp_function.cpp       |   2 +-
 .../core/optimizers/lrsdp/lrsdp_function.hpp       |   2 +-
 .../core/optimizers/sa/exponential_schedule.hpp    |   2 +-
 src/mlpack/core/optimizers/sa/sa.hpp               |   2 +-
 src/mlpack/core/optimizers/sa/sa_impl.hpp          |   2 +-
 src/mlpack/core/optimizers/sgd/sgd.hpp             |   2 +-
 src/mlpack/core/optimizers/sgd/sgd_impl.hpp        |   2 +-
 src/mlpack/core/optimizers/sgd/test_function.cpp   |   2 +-
 src/mlpack/core/optimizers/sgd/test_function.hpp   |   2 +-
 src/mlpack/core/tree/ballbound.hpp                 |   2 +-
 src/mlpack/core/tree/ballbound_impl.hpp            |   2 +-
 src/mlpack/core/tree/binary_space_tree.hpp         |   2 +-
 .../tree/binary_space_tree/binary_space_tree.hpp   |   2 +-
 .../binary_space_tree/binary_space_tree_impl.hpp   |   2 +-
 .../tree/binary_space_tree/dual_tree_traverser.hpp |   2 +-
 .../binary_space_tree/dual_tree_traverser_impl.hpp |   2 +-
 .../core/tree/binary_space_tree/mean_split.hpp     |   2 +-
 .../tree/binary_space_tree/mean_split_impl.hpp     |   2 +-
 .../binary_space_tree/single_tree_traverser.hpp    |   2 +-
 .../single_tree_traverser_impl.hpp                 |   2 +-
 src/mlpack/core/tree/binary_space_tree/traits.hpp  |   2 +-
 src/mlpack/core/tree/bounds.hpp                    |   2 +-
 src/mlpack/core/tree/cosine_tree/cosine_tree.cpp   |   2 +-
 src/mlpack/core/tree/cosine_tree/cosine_tree.hpp   |   2 +-
 src/mlpack/core/tree/cover_tree.hpp                |   2 +-
 src/mlpack/core/tree/cover_tree/cover_tree.hpp     |   2 +-
 .../core/tree/cover_tree/cover_tree_impl.hpp       |   2 +-
 .../core/tree/cover_tree/dual_tree_traverser.hpp   |   2 +-
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 .../core/tree/cover_tree/first_point_is_root.hpp   |   2 +-
 .../core/tree/cover_tree/single_tree_traverser.hpp |   2 +-
 .../tree/cover_tree/single_tree_traverser_impl.hpp |   2 +-
 src/mlpack/core/tree/cover_tree/traits.hpp         |   2 +-
 src/mlpack/core/tree/example_tree.hpp              |   2 +-
 src/mlpack/core/tree/hrectbound.hpp                |   2 +-
 src/mlpack/core/tree/hrectbound_impl.hpp           |   2 +-
 src/mlpack/core/tree/mrkd_statistic.cpp            |   2 +-
 src/mlpack/core/tree/mrkd_statistic.hpp            |   2 +-
 src/mlpack/core/tree/mrkd_statistic_impl.hpp       |   2 +-
 src/mlpack/core/tree/rectangle_tree.hpp            |   2 +-
 src/mlpack/core/tree/statistic.hpp                 |   2 +-
 src/mlpack/core/tree/traversal_info.hpp            |   2 +-
 src/mlpack/core/tree/tree_traits.hpp               |   2 +-
 src/mlpack/core/util/arma_traits.hpp               |   2 +-
 src/mlpack/core/util/cli.cpp                       |   2 +-
 src/mlpack/core/util/cli.hpp                       |   2 +-
 src/mlpack/core/util/cli_deleter.cpp               |   2 +-
 src/mlpack/core/util/cli_deleter.hpp               |   2 +-
 src/mlpack/core/util/cli_impl.hpp                  |   2 +-
 src/mlpack/core/util/log.cpp                       |   2 +-
 src/mlpack/core/util/log.hpp                       |   2 +-
 src/mlpack/core/util/nulloutstream.hpp             |   2 +-
 src/mlpack/core/util/option.cpp                    |   2 +-
 src/mlpack/core/util/option.hpp                    |   2 +-
 src/mlpack/core/util/option_impl.hpp               |   2 +-
 src/mlpack/core/util/prefixedoutstream.cpp         |   2 +-
 src/mlpack/core/util/prefixedoutstream.hpp         |   2 +-
 src/mlpack/core/util/prefixedoutstream_impl.hpp    |   2 +-
 src/mlpack/core/util/save_restore_utility.cpp      |   2 +-
 src/mlpack/core/util/save_restore_utility.hpp      |   2 +-
 src/mlpack/core/util/save_restore_utility_impl.hpp |   2 +-
 src/mlpack/core/util/sfinae_utility.hpp            |   2 +-
 src/mlpack/core/util/string_util.cpp               |   2 +-
 src/mlpack/core/util/string_util.hpp               |   2 +-
 src/mlpack/core/util/timers.cpp                    |   2 +-
 src/mlpack/core/util/timers.hpp                    |   2 +-
 src/mlpack/core/util/version.cpp                   |   2 +-
 src/mlpack/core/util/version.hpp                   |   2 +-
 src/mlpack/methods/amf/amf.hpp                     |   2 +-
 src/mlpack/methods/amf/amf_impl.hpp                |   2 +-
 src/mlpack/methods/amf/amf_main.cpp                |   2 +-
 .../methods/amf/init_rules/random_acol_init.hpp    |   2 +-
 src/mlpack/methods/amf/init_rules/random_init.hpp  |   2 +-
 .../complete_incremental_termination.hpp           |   2 +-
 .../incomplete_incremental_termination.hpp         |   2 +-
 .../simple_residue_termination.hpp                 |   2 +-
 .../simple_tolerance_termination.hpp               |   2 +-
 .../validation_RMSE_termination.hpp                |   2 +-
 src/mlpack/methods/amf/update_rules/nmf_als.hpp    |   2 +-
 .../methods/amf/update_rules/nmf_mult_dist.hpp     |   2 +-
 .../methods/amf/update_rules/nmf_mult_div.hpp      |   2 +-
 .../amf/update_rules/svd_batch_learning.hpp        |   2 +-
 .../svd_complete_incremental_learning.hpp          |   2 +-
 .../svd_incomplete_incremental_learning.hpp        |   2 +-
 src/mlpack/methods/cf/cf.hpp                       |   2 +-
 src/mlpack/methods/cf/cf_impl.hpp                  |   2 +-
 src/mlpack/methods/cf/cf_main.cpp                  |   2 +-
 .../methods/decision_stump/decision_stump.hpp      |   2 +-
 .../methods/decision_stump/decision_stump_impl.hpp |  29 +--
 .../methods/decision_stump/decision_stump_main.cpp |   2 +-
 src/mlpack/methods/det/det_main.cpp                |   2 +-
 src/mlpack/methods/det/dt_utils.cpp                |   2 +-
 src/mlpack/methods/det/dt_utils.hpp                |   2 +-
 src/mlpack/methods/det/dtree.cpp                   |   2 +-
 src/mlpack/methods/det/dtree.hpp                   |   2 +-
 src/mlpack/methods/emst/dtb.hpp                    |   2 +-
 src/mlpack/methods/emst/dtb_impl.hpp               |   2 +-
 src/mlpack/methods/emst/dtb_rules.hpp              |   2 +-
 src/mlpack/methods/emst/dtb_rules_impl.hpp         |   2 +-
 src/mlpack/methods/emst/dtb_stat.hpp               |   2 +-
 src/mlpack/methods/emst/edge_pair.hpp              |   2 +-
 src/mlpack/methods/emst/emst_main.cpp              |   2 +-
 src/mlpack/methods/emst/union_find.hpp             |   2 +-
 src/mlpack/methods/fastmks/fastmks.hpp             |   2 +-
 src/mlpack/methods/fastmks/fastmks_impl.hpp        |   2 +-
 src/mlpack/methods/fastmks/fastmks_main.cpp        |   2 +-
 src/mlpack/methods/fastmks/fastmks_rules.hpp       |   2 +-
 src/mlpack/methods/fastmks/fastmks_rules_impl.hpp  |   2 +-
 src/mlpack/methods/fastmks/fastmks_stat.hpp        |   2 +-
 src/mlpack/methods/gmm/diagonal_constraint.hpp     |   2 +-
 .../methods/gmm/eigenvalue_ratio_constraint.hpp    |   2 +-
 src/mlpack/methods/gmm/em_fit.hpp                  |   2 +-
 src/mlpack/methods/gmm/em_fit_impl.hpp             |   2 +-
 src/mlpack/methods/gmm/gmm.hpp                     |   2 +-
 src/mlpack/methods/gmm/gmm_impl.hpp                |   2 +-
 src/mlpack/methods/gmm/gmm_main.cpp                |   2 +-
 src/mlpack/methods/gmm/no_constraint.hpp           |   2 +-
 src/mlpack/methods/gmm/phi.hpp                     |   2 +-
 .../methods/gmm/positive_definite_constraint.hpp   |   2 +-
 src/mlpack/methods/hmm/hmm.hpp                     |   2 +-
 src/mlpack/methods/hmm/hmm_generate_main.cpp       |   2 +-
 src/mlpack/methods/hmm/hmm_impl.hpp                |   2 +-
 src/mlpack/methods/hmm/hmm_loglik_main.cpp         |   2 +-
 src/mlpack/methods/hmm/hmm_train_main.cpp          |   2 +-
 src/mlpack/methods/hmm/hmm_util.hpp                |   2 +-
 src/mlpack/methods/hmm/hmm_util_impl.hpp           |   2 +-
 src/mlpack/methods/hmm/hmm_viterbi_main.cpp        |   2 +-
 src/mlpack/methods/kernel_pca/kernel_pca.hpp       |   2 +-
 src/mlpack/methods/kernel_pca/kernel_pca_impl.hpp  |   2 +-
 src/mlpack/methods/kernel_pca/kernel_pca_main.cpp  |   2 +-
 .../kernel_pca/kernel_rules/naive_method.hpp       |   2 +-
 .../kernel_pca/kernel_rules/nystroem_method.hpp    |   2 +-
 src/mlpack/methods/kmeans/allow_empty_clusters.hpp |   2 +-
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 src/mlpack/methods/kmeans/random_partition.hpp     |   2 +-
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 src/mlpack/methods/lars/lars.cpp                   |   2 +-
 src/mlpack/methods/lars/lars.hpp                   |   2 +-
 src/mlpack/methods/lars/lars_main.cpp              |   2 +-
 .../linear_regression/linear_regression.cpp        |   2 +-
 .../linear_regression/linear_regression.hpp        |   2 +-
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 src/mlpack/methods/local_coordinate_coding/lcc.hpp |   2 +-
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 src/mlpack/methods/lsh/lsh_main.cpp                |   2 +-
 src/mlpack/methods/lsh/lsh_search.hpp              |   2 +-
 src/mlpack/methods/lsh/lsh_search_impl.hpp         |   2 +-
 src/mlpack/methods/mvu/mvu.cpp                     |   2 +-
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 .../methods/naive_bayes/naive_bayes_classifier.hpp |   2 +-
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 src/mlpack/methods/nmf/nmf_main.cpp                |   2 +-
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 src/mlpack/methods/pca/pca.cpp                     |   2 +-
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 src/mlpack/methods/pca/pca_main.cpp                |   2 +-
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 src/mlpack/tests/quic_svd_test.cpp                 |   2 +-
 src/mlpack/tests/radical_test.cpp                  |   2 +-
 src/mlpack/tests/range_search_test.cpp             |   2 +-
 src/mlpack/tests/regularized_svd_test.cpp          |   2 +-
 src/mlpack/tests/sa_test.cpp                       |   2 +-
 src/mlpack/tests/save_restore_utility_test.cpp     |   2 +-
 src/mlpack/tests/sgd_test.cpp                      |   2 +-
 src/mlpack/tests/sort_policy_test.cpp              |   2 +-
 src/mlpack/tests/sparse_autoencoder_test.cpp       |   2 +-
 src/mlpack/tests/sparse_coding_test.cpp            |   2 +-
 src/mlpack/tests/svd_batch_test.cpp                |   2 +-
 src/mlpack/tests/svd_incremental_test.cpp          |   2 +-
 src/mlpack/tests/to_string_test.cpp                |   2 +-
 src/mlpack/tests/tree_test.cpp                     |   2 +-
 src/mlpack/tests/tree_traits_test.cpp              |   2 +-
 src/mlpack/tests/union_find_test.cpp               |   2 +-
 358 files changed, 1028 insertions(+), 507 deletions(-)

-- 
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