[pytables] branch master updated (5afcb30 -> 2835255)

Antonio Valentino a_valentino-guest at moszumanska.debian.org
Fri Aug 14 19:00:04 UTC 2015


This is an automated email from the git hooks/post-receive script.

a_valentino-guest pushed a change to branch master
in repository pytables.

      from  5afcb30   Fix debian/watch file
      adds  c62232c   Imported Upstream version 3.2.1
       new  552eb9c   Merge tag 'upstream/3.2.1'
       new  818551a   New upstream version
       new  82c37b6   Refresh all patches
       new  637e3ae   Update copyright file
       new  a536c59   Updated dependencies
       new  792cc88   Standard version bump
       new  0545d51   Fix vsc url
       new  8b763c1   General update and reformatting of debian/control
       new  1b6d23e   Fix uniline fields in patches
       new  502c05e   Make build reproducible
       new  5361a4e   Drop 0007-Temporay-desable-tests-that-use-the-lz4-conpressor.patch
       new  705b550   Update authors in debian/python-tables-doc.doc-base
       new  f4819f7   Add setuptools to build deps
       new  28c2d27   Refresh all patches
       new  a5cfd41   Improve changelog
       new  0539997   READEM.txt --> README.rst
       new  cdf667a   Run tests with utf-8 locale
       new  fea982d   Fix lintian warnings
       new  02ebcb2   New manpage for the pttree utility
       new  2835255   Fix lintian warnings in copyright file

The 20 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 .gitignore                                         |    1 +
 .travis.yml                                        |   31 +-
 ANNOUNCE.txt.in                                    |   22 +-
 LICENSE.txt                                        |    2 +-
 MANIFEST.in                                        |    2 +-
 Makefile                                           |    2 +-
 Makefile_windows                                   |   23 -
 README.txt => README.rst                           |   30 +-
 RELEASE_NOTES.txt                                  |  360 ++-
 VERSION                                            |    2 +-
 bench/search-bench.py                              |    1 +
 c-blosc/.mailmap                                   |    2 +-
 c-blosc/ANNOUNCE.rst                               |   11 +-
 c-blosc/CMakeLists.txt                             |    6 +-
 c-blosc/LICENSES/BLOSC.txt                         |    4 +-
 c-blosc/README.rst                                 |   26 +-
 c-blosc/RELEASE_NOTES.rst                          |   62 +-
 c-blosc/RELEASING.rst                              |   28 +-
 c-blosc/THANKS.rst                                 |   28 +
 c-blosc/THOUGHTS_FOR_2.0.txt                       |   19 +
 c-blosc/bench/Makefile                             |    2 +-
 c-blosc/bench/Makefile.mingw                       |    2 +-
 c-blosc/bench/bench.c                              |    2 +-
 c-blosc/bench/plot-speeds.py                       |   38 +-
 c-blosc/blosc/CMakeLists.txt                       |    4 +-
 c-blosc/blosc/blosc.c                              |  167 +-
 c-blosc/blosc/blosc.h                              |   34 +-
 c-blosc/blosc/blosclz.c                            |   36 +-
 c-blosc/blosc/blosclz.h                            |    2 +-
 c-blosc/blosc/shuffle.c                            |    2 +-
 c-blosc/blosc/shuffle.h                            |    2 +-
 c-blosc/cmake/FindSSE.cmake                        |  125 +
 c-blosc/examples/README.rst                        |   12 +
 c-blosc/examples/many_compressors.c                |  118 +
 c-blosc/examples/multithread.c                     |  100 +
 c-blosc/examples/simple.c                          |   90 +
 c-blosc/hdf5/blosc_filter.c                        |   26 +-
 c-blosc/hdf5/blosc_plugin.c                        |   42 +
 c-blosc/hdf5/blosc_plugin.h                        |   36 +
 c-blosc/internal-complibs/lz4-r113/lz4.c           |  877 -------
 c-blosc/internal-complibs/lz4-r113/lz4.h           |  251 --
 c-blosc/internal-complibs/lz4-r119/lz4.c           | 1247 ++++++++++
 c-blosc/internal-complibs/lz4-r119/lz4.h           |  306 +++
 .../{lz4-r113 => lz4-r119}/lz4hc.c                 |    6 +-
 .../{lz4-r113 => lz4-r119}/lz4hc.h                 |    7 +-
 c-blosc/tests/Makefile                             |    2 +-
 c-blosc/tests/test_all.sh                          |    2 +-
 c-blosc/tests/test_api.c                           |    2 +-
 c-blosc/tests/test_basics.c                        |   72 +-
 c-blosc/tests/test_common.h                        |    2 +-
 debian/changelog                                   |   31 +-
 debian/control                                     |   79 +-
 debian/copyright                                   |   75 +-
 debian/patches/0001-use-dynamic-lib.patch          |    4 +-
 .../patches/0002-Use-system-compression-libs.patch |    4 +-
 ...-Better-control-of-verbosity-in-unittests.patch |   33 -
 .../0003-Never-use-the-msse2-flag-explicitly.patch |   24 +
 ...o-not-fetch-icons-for-external-web-sites.patch} |    4 +-
 .../0004-Never-use-the-msse2-flag-explicitly.patch |   21 -
 ...mport-issue-with-cython-newer-than-0.20.2.patch |   21 -
 ...desable-tests-that-use-the-lz4-conpressor.patch |   32 -
 debian/patches/series                              |    7 +-
 debian/pttree.1                                    |   79 +
 debian/python-tables-doc.doc-base                  |    2 +-
 debian/python-tables-doc.docs                      |    2 +-
 debian/python-tables.docs                          |    2 +-
 debian/python-tables.manpages                      |    1 +
 debian/rules                                       |   30 +-
 doc/Makefile                                       |   51 +-
 doc/make.bat                                       |   72 +
 doc/source/FAQ.rst                                 |    2 +-
 doc/source/MIGRATING_TO_3.x.rst                    |    4 +-
 doc/source/conf.py                                 |  124 +-
 doc/source/cookbook/index.rst                      |    1 +
 doc/source/cookbook/inmemory_hdf5_files.rst        |    2 +-
 doc/source/cookbook/tailoring_atexit_hooks.rst     |   13 +-
 doc/source/cookbook/threading.rst                  |  274 +++
 doc/source/dev_team.rst                            |    3 +
 doc/source/development.rst                         |    4 +-
 doc/source/downloads.rst                           |   10 +-
 doc/source/index.rst                               |    5 +-
 doc/source/project_pointers.rst                    |    1 -
 doc/source/release-notes/RELEASE_NOTES_v3.0.x.rst  |    2 +-
 doc/source/release-notes/RELEASE_NOTES_v3.1.x.rst  |  222 +-
 ...E_NOTES_v3.1.x.rst => RELEASE_NOTES_v3.2.x.rst} |    0
 doc/source/release_notes.rst                       |    5 +
 doc/source/usersguide/bibliography.rst             |    2 +-
 doc/source/usersguide/condition_syntax.rst         |    2 +-
 doc/source/usersguide/index.rst                    |    2 +-
 doc/source/usersguide/installation.rst             |   87 +-
 doc/source/usersguide/libref/top_level.rst         |    2 -
 doc/source/usersguide/usersguide.rst               |    2 +-
 examples/check_examples.sh                         |   93 +-
 examples/inmemory.py                               |    0
 examples/multiprocess_access_queues.py             |    8 +-
 examples/objecttree.py                             |    7 +-
 examples/simple_threading.py                       |  100 +
 examples/table-tree.py                             |    2 +-
 examples/threading_monkeypatch.py                  |  136 +
 examples/tutorial1-1.py                            |    7 +-
 examples/tutorial1-2.py                            |    2 +-
 requirements.txt                                   |    7 +-
 setup.py                                           |  322 +--
 src/H5ATTR.c                                       |   39 +-
 src/idx-opt.c                                      | 1044 --------
 src/idx-opt.h                                      |   17 -
 src/utils.c                                        |  207 +-
 src/utils.h                                        |   38 +-
 subtree-merge-blosc.sh                             |   62 +-
 tables/__init__.py                                 |    1 +
 tables/_past.py                                    |    1 -
 tables/array.py                                    |   16 +-
 tables/atom.py                                     |   41 +-
 tables/attributeset.py                             |   64 +-
 tables/carray.py                                   |    2 +-
 tables/definitions.pxd                             |   38 +
 tables/description.py                              |   48 +-
 tables/earray.py                                   |    2 +-
 tables/expression.py                               |   11 +-
 tables/file.py                                     |    9 +-
 tables/group.py                                    |   79 +-
 tables/hdf5extension.pyx                           |   51 +-
 tables/index.py                                    |   25 +-
 tables/indexes.py                                  |    4 +-
 tables/indexesextension.pyx                        |  577 ++++-
 tables/leaf.py                                     |   45 +-
 tables/link.py                                     |  146 +-
 tables/lrucacheextension.pyx                       |   13 +-
 tables/node.py                                     |    7 +-
 tables/nodes/filenode.py                           |   60 +-
 tables/nodes/tests/test_filenode.py                |  215 +-
 tables/parameters.py                               |   12 +-
 tables/req_versions.py                             |   16 +-
 tables/scripts/ptrepack.py                         |  146 +-
 tables/scripts/pttree.py                           |  466 ++++
 tables/table.py                                    |   77 +-
 tables/tableextension.pyx                          |   56 +-
 tables/tests/__init__.py                           |    3 +-
 tables/tests/bug-idx.h5                            |  Bin 0 -> 14649 bytes
 tables/tests/common.py                             |  403 +--
 tables/tests/create_backcompat_indexes.py          |   21 +-
 tables/tests/issue_368.h5                          |  Bin 0 -> 1232 bytes
 tables/tests/test_all.py                           |   85 +-
 tables/tests/test_array.py                         |  987 +++-----
 tables/tests/test_attributes.py                    |  560 ++---
 tables/tests/test_aux.py                           |   34 +
 tables/tests/test_backcompat.py                    |  207 +-
 tables/tests/test_basics.py                        | 2115 +++++++---------
 tables/tests/test_carray.py                        |  736 +++---
 tables/tests/test_create.py                        |  805 +++---
 tables/tests/test_do_undo.py                       | 2601 +++++++++++---------
 tables/tests/test_earray.py                        |  658 ++---
 tables/tests/test_enum.py                          |   57 +-
 tables/tests/test_expression.py                    |  300 +--
 tables/tests/test_garbage.py                       |   10 +-
 tables/tests/test_hdf5compat.py                    |  104 +-
 tables/tests/test_index_backcompat.py              |   41 +-
 tables/tests/test_indexes.py                       |  698 +++---
 tables/tests/test_indexvalues.py                   |  564 ++---
 tables/tests/test_links.py                         |  170 +-
 tables/tests/test_lists.py                         |  266 +-
 tables/tests/test_nestedtypes.py                   |   90 +-
 tables/tests/test_numpy.py                         |  732 +++---
 tables/tests/test_queries.py                       |   80 +-
 tables/tests/test_tables.py                        | 2115 ++++++----------
 tables/tests/test_tablesMD.py                      |  616 +++--
 tables/tests/test_timetype.py                      |  283 +--
 tables/tests/test_tree.py                          |  356 +--
 tables/tests/test_types.py                         |  147 +-
 tables/tests/test_vlarray.py                       | 1408 +++++------
 tables/utilsextension.pyx                          |  156 +-
 tables/vlarray.py                                  |    8 +-
 utils/pttree                                       |    3 +
 173 files changed, 14112 insertions(+), 13245 deletions(-)
 delete mode 100644 Makefile_windows
 rename README.txt => README.rst (84%)
 create mode 100644 c-blosc/THANKS.rst
 create mode 100644 c-blosc/THOUGHTS_FOR_2.0.txt
 create mode 100644 c-blosc/cmake/FindSSE.cmake
 create mode 100644 c-blosc/examples/README.rst
 create mode 100644 c-blosc/examples/many_compressors.c
 create mode 100644 c-blosc/examples/multithread.c
 create mode 100644 c-blosc/examples/simple.c
 create mode 100644 c-blosc/hdf5/blosc_plugin.c
 create mode 100644 c-blosc/hdf5/blosc_plugin.h
 delete mode 100644 c-blosc/internal-complibs/lz4-r113/lz4.c
 delete mode 100644 c-blosc/internal-complibs/lz4-r113/lz4.h
 create mode 100644 c-blosc/internal-complibs/lz4-r119/lz4.c
 create mode 100644 c-blosc/internal-complibs/lz4-r119/lz4.h
 rename c-blosc/internal-complibs/{lz4-r113 => lz4-r119}/lz4hc.c (99%)
 rename c-blosc/internal-complibs/{lz4-r113 => lz4-r119}/lz4hc.h (98%)
 delete mode 100644 debian/patches/0003-Better-control-of-verbosity-in-unittests.patch
 create mode 100644 debian/patches/0003-Never-use-the-msse2-flag-explicitly.patch
 rename debian/patches/{0005-Do-not-fetch-icons-for-external-web-sites.patch => 0004-Do-not-fetch-icons-for-external-web-sites.patch} (89%)
 delete mode 100644 debian/patches/0004-Never-use-the-msse2-flag-explicitly.patch
 delete mode 100644 debian/patches/0006-fix-an-import-issue-with-cython-newer-than-0.20.2.patch
 delete mode 100644 debian/patches/0007-Temporay-desable-tests-that-use-the-lz4-conpressor.patch
 create mode 100644 debian/pttree.1
 create mode 100644 doc/source/cookbook/threading.rst
 copy doc/source/release-notes/{RELEASE_NOTES_v3.1.x.rst => RELEASE_NOTES_v3.2.x.rst} (100%)
 mode change 100755 => 100644 examples/inmemory.py
 create mode 100644 examples/simple_threading.py
 create mode 100644 examples/threading_monkeypatch.py
 create mode 100644 tables/scripts/pttree.py
 create mode 100644 tables/tests/bug-idx.h5
 create mode 100644 tables/tests/issue_368.h5
 create mode 100644 tables/tests/test_aux.py
 create mode 100755 utils/pttree

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