[adios] branch debian/master updated (f1b6f4c -> 8dd83b8)
Alastair McKinstry
mckinstry at moszumanska.debian.org
Tue Aug 18 15:58:31 UTC 2015
This is an automated email from the git hooks/post-receive script.
mckinstry pushed a change to branch debian/master
in repository adios.
from f1b6f4c Merge branch 'debian/master' of ssh://git.debian.org/git/debian-science/packages/adios into debian/master
new 5935942 upstream 1.9.0
new d1472ed Merge tag 'upstream/1.9.0' into debian/master
new ee415a7 Refresh patches
new 8dd83b8 Refresh patches
The 4 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails. The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.
Summary of changes:
CMakeLists.txt | 69 +-
INSTALL | 4 +-
Makefile.am | 3 +-
Makefile.in | 11 +-
NEWS | 22 +
adios_config.flags.cmake | 39 +
cmake_init | 4 +-
config.h.cmake | 9 -
config.h.in | 9 -
config/ac_dataspaces.m4 | 6 +-
config/ac_fastbit.m4 | 2 +-
configure | 384 +-
configure.ac | 52 +-
debian/changelog | 6 +
debian/patches/autotools-fixes.patch | 10 +-
debian/patches/debian_paths.patch | 24 +-
debian/patches/exclude_cmake.patch | 32 +-
debian/patches/mpi4py_fix.patch | 12 +-
debian/patches/multiarch_safe.patch | 10991 +++++++-
debian/patches/netcdf-fix.patch | 8 +-
debian/patches/numpy_paths.patch | 34 +-
debian/patches/pkgconfig.patch | 807 +-
debian/patches/py3.patch | 284 +
debian/patches/python3.patch | 172 +-
debian/patches/python_wrapper.patch | 66 +-
debian/patches/series | 1 +
examples/C/Makefile.in | 3 +
examples/C/arrays/CMakeLists.txt | 1 +
examples/C/arrays/Makefile.am | 2 +-
examples/C/arrays/Makefile.in | 7 +-
examples/C/attributes/CMakeLists.txt | 1 +
examples/C/attributes/Makefile.am | 2 +-
examples/C/attributes/Makefile.in | 7 +-
examples/C/attributes/attributes_read.c | 37 +-
examples/C/flexpath_arrays/Makefile.in | 3 +
.../global_range_select/CMakeLists.txt | 1 +
.../global_range_select/Makefile.am | 2 +-
.../global_range_select/Makefile.in | 7 +-
.../flexpath_arrays/process_select/CMakeLists.txt | 1 +
.../C/flexpath_arrays/process_select/Makefile.am | 2 +-
.../C/flexpath_arrays/process_select/Makefile.in | 7 +-
examples/C/global-array-time/CMakeLists.txt | 1 +
examples/C/global-array-time/Makefile.am | 2 +-
examples/C/global-array-time/Makefile.in | 7 +-
examples/C/global-array/CMakeLists.txt | 1 +
examples/C/global-array/Makefile.am | 2 +-
examples/C/global-array/Makefile.in | 7 +-
examples/C/global-array/adios_global.xml | 2 +-
examples/C/global-array/no_xml_write_byid.c | 24 +-
examples/C/icee_arrays/Makefile.in | 3 +
examples/C/icee_arrays/array/CMakeLists.txt | 1 +
examples/C/icee_arrays/array/Makefile.am | 2 +-
examples/C/icee_arrays/array/Makefile.in | 7 +-
examples/C/manual/CMakeLists.txt | 1 +
examples/C/manual/Makefile.am | 2 +-
examples/C/manual/Makefile.in | 7 +-
examples/C/query/CMakeLists.txt | 1 +
examples/C/query/Makefile.am | 2 +-
examples/C/query/Makefile.in | 7 +-
examples/C/read_all/CMakeLists.txt | 1 +
examples/C/read_all/Makefile.am | 2 +-
examples/C/read_all/Makefile.in | 7 +-
examples/C/scalars/CMakeLists.txt | 1 +
examples/C/scalars/Makefile.am | 2 +-
examples/C/scalars/Makefile.in | 7 +-
examples/C/schema/CMakeLists.txt | 1 +
examples/C/schema/Makefile.am | 2 +-
examples/C/schema/Makefile.in | 7 +-
examples/C/stat/CMakeLists.txt | 1 +
examples/C/stat/Makefile.am | 2 +-
examples/C/stat/Makefile.in | 7 +-
examples/C/transforms/CMakeLists.txt | 1 +
examples/C/transforms/Makefile.am | 2 +-
examples/C/transforms/Makefile.in | 8 +-
examples/Fortran/Makefile.in | 3 +
examples/Fortran/arrays/CMakeLists.txt | 2 +-
examples/Fortran/arrays/Makefile.am | 2 +-
examples/Fortran/arrays/Makefile.in | 6 +-
examples/Fortran/global-array-time/CMakeLists.txt | 2 +-
examples/Fortran/global-array-time/Makefile.am | 2 +-
examples/Fortran/global-array-time/Makefile.in | 6 +-
examples/Fortran/global-array/CMakeLists.txt | 2 +-
examples/Fortran/global-array/Makefile.am | 2 +-
examples/Fortran/global-array/Makefile.in | 6 +-
.../Fortran/global-array/no_xml_write_byid.F90 | 21 +
examples/Fortran/scalars/CMakeLists.txt | 2 +-
examples/Fortran/scalars/Makefile.am | 2 +-
examples/Fortran/scalars/Makefile.in | 6 +-
examples/Fortran/schema/CMakeLists.txt | 2 +-
examples/Fortran/schema/Makefile.am | 2 +-
examples/Fortran/schema/Makefile.in | 6 +-
examples/Makefile.in | 3 +
examples/coupling/coupling_reader_2D.F90 | 4 +-
examples/coupling/coupling_writer_2D.F90 | 4 +-
examples/staging/stage_write/genarray_stream.F90 | 4 +-
.../stage_write_varyingsize/decompose_block.o | Bin 0 -> 9968 bytes
.../stage_write_varyingsize/genarray_varying | Bin 0 -> 5254828 bytes
.../stage_write_varyingsize/genarray_varying.F90 | 4 +-
.../stage_write_varyingsize/genarray_varying.o | Bin 0 -> 92096 bytes
.../genarray_varying_comm.mod | 122 +
.../staging/stage_write_varyingsize/stage_write | Bin 0 -> 4501675 bytes
.../staging/stage_write_varyingsize/stage_write.o | Bin 0 -> 55448 bytes
examples/staging/stage_write_varyingsize/utils.o | Bin 0 -> 23680 bytes
runconf | 68 +-
src/CMakeLists.txt | 5 +-
src/Makefile.am | 38 +-
src/Makefile.in | 1207 +-
src/core/adios.c | 19 +-
src/core/adios_bp_v1.c | 248 +-
src/core/adios_bp_v1.h | 17 +-
src/core/adios_internals.c | 520 +-
src/core/adios_internals.h | 33 +-
src/core/adios_internals_mxml.c | 165 +-
src/core/adios_logger.h | 8 +
src/core/adios_read.c | 10 +
src/core/adios_read_hooks.c | 15 +-
src/core/adios_transport_hooks.c | 17 +-
src/core/adios_transport_hooks.h | 4 +-
src/core/adiosf.c | 110 +-
src/core/adiosf_defs_mod.f90 | 2 +
src/core/adiosf_write_mod.f90 | 290 +-
src/core/bp_types.h | 13 +-
src/core/bp_utils.c | 238 +-
src/core/bp_utils.h | 7 +-
src/core/common_adios.c | 213 +-
src/core/common_adios.h | 5 +-
src/core/common_read.c | 214 +-
src/core/common_read.h | 3 +
src/core/transforms/adios_transforms_common.c | 4 +-
src/core/transforms/adios_transforms_write.c | 21 +-
src/core/util.c | 38 +
src/core/util.h | 6 +
src/public/adios.h | 16 +-
src/public/adios_link.h | 28 +
src/public/adios_read_ext.h | 94 +-
src/public/adios_read_v1.h | 1 +
src/public/adios_read_v2.h | 53 +-
src/public/adios_schema.h | 18 +-
src/public/adios_selection.h | 25 +-
src/public/adios_types.h | 4 +
src/public/adios_version.h | 41 +
src/public/adios_version.h.in | 41 +
src/query/common_query.c | 46 +-
src/query/fastbit_adios.c | 295 +-
src/query/fastbit_adios.h | 29 +-
src/query/query_alac.c | 83 +-
src/query/query_fastbit.c | 2234 +-
src/query/query_utils.c | 7 +
src/query/query_utils.h | 3 +-
src/read/read_bp.c | 84 +-
src/read/read_bp_staged.c | 6 +-
src/read/read_dataspaces.c | 2 +
src/read/read_dimes.c | 2 +
src/read/read_flexpath.c | 642 +-
src/read/read_icee.c | 3 +-
src/transforms/adios_transform_alacrity_write.c | 4 +-
src/transforms/adios_transform_aplod_write.c | 4 +-
src/transforms/adios_transform_bzip2_write.c | 4 +-
src/transforms/adios_transform_isobar_write.c | 4 +-
src/transforms/adios_transform_szip_write.c | 4 +-
src/transforms/adios_transform_template_write.c | 4 +-
src/transforms/adios_transform_zlib_write.c | 4 +-
src/write/adios_dataspaces.c | 10 +-
src/write/adios_datatap.c | 2 +-
src/write/adios_dimes.c | 10 +-
src/write/adios_flexpath.c | 345 +-
src/write/adios_icee.c | 4 +-
src/write/adios_mpi.c | 40 +-
src/write/adios_mpi_amr.c | 458 +-
src/write/adios_mpi_bgq.c | 155 +-
src/write/adios_mpi_lustre.c | 61 +-
src/write/adios_nc4.c | 26 +-
src/write/adios_nssi.c | 2 +-
src/write/adios_phdf5.c | 26 +-
src/write/adios_posix.c | 110 +-
src/write/adios_posix1.c | 27 +-
src/write/adios_var_merge.c | 34 +-
tests/C/CMakeLists.txt | 1 +
tests/C/Makefile.am | 2 +-
tests/C/Makefile.in | 7 +-
tests/C/fgr_tests/CMakeLists.txt | 1 +
tests/C/fgr_tests/Makefile.am | 2 +-
tests/C/fgr_tests/Makefile.in | 7 +-
.../C/flexpath_tests/1D_arr_global/CMakeLists.txt | 1 +
tests/C/flexpath_tests/1D_arr_global/Makefile.am | 2 +-
tests/C/flexpath_tests/1D_arr_global/Makefile.in | 8 +-
.../1D_arr_global_noxml/CMakeLists.txt | 1 +
.../flexpath_tests/1D_arr_global_noxml/Makefile.am | 2 +-
.../flexpath_tests/1D_arr_global_noxml/Makefile.in | 8 +-
tests/C/flexpath_tests/Makefile.in | 3 +
.../global_range_select/CMakeLists.txt | 1 +
.../flexpath_tests/global_range_select/Makefile.am | 2 +-
.../flexpath_tests/global_range_select/Makefile.in | 8 +-
tests/C/flexpath_tests/maya_append/CMakeLists.txt | 1 +
tests/C/flexpath_tests/maya_append/Makefile.am | 2 +-
tests/C/flexpath_tests/maya_append/Makefile.in | 8 +-
tests/C/flexpath_tests/maya_noxml/CMakeLists.txt | 1 +
tests/C/flexpath_tests/maya_noxml/Makefile.am | 2 +-
tests/C/flexpath_tests/maya_noxml/Makefile.in | 8 +-
tests/C/flexpath_tests/scalar/CMakeLists.txt | 1 +
tests/C/flexpath_tests/scalar/Makefile.am | 2 +-
tests/C/flexpath_tests/scalar/Makefile.in | 8 +-
tests/C/query/Makefile.in | 3 +
tests/C/query/alacrity/CMakeLists.txt | 1 +
tests/C/query/alacrity/Makefile.am | 2 +-
tests/C/query/alacrity/Makefile.in | 6 +-
tests/C/query/common/CMakeLists.txt | 1 +
tests/C/query/common/Makefile.am | 2 +-
tests/C/query/common/Makefile.in | 6 +-
tests/C/query/fastbit/CMakeLists.txt | 1 +
tests/C/query/fastbit/Makefile.am | 4 +-
tests/C/query/fastbit/Makefile.in | 8 +-
tests/C/query/fastbit/fastbit_tests.c | 262 +-
tests/Fortran/CMakeLists.txt | 2 +-
tests/Fortran/Makefile.am | 2 +-
tests/Fortran/Makefile.in | 6 +-
tests/Makefile.in | 3 +
tests/bp_read/CMakeLists.txt | 2 +-
tests/bp_read/Makefile.am | 2 +-
tests/bp_read/Makefile.in | 7 +-
tests/bp_read/bp_read_f.F90 | 4 +-
tests/bp_read/bp_read_f_v1.F90 | 4 +-
tests/genarray/CMakeLists.txt | 2 +-
tests/genarray/Makefile.am | 2 +-
tests/genarray/Makefile.in | 6 +-
tests/genarray/copyarray.F90 | 4 +-
tests/genarray/copyarray2D.F90 | 4 +-
tests/genarray/genarray.F90 | 4 +-
tests/genarray/genarray2D.F90 | 4 +-
tests/suite/Makefile.in | 3 +
tests/suite/programs/CMakeLists.txt | 1 +
tests/suite/programs/Makefile.am | 10 +-
tests/suite/programs/Makefile.in | 226 +-
tests/suite/programs/adios_transforms.xml | 2 +-
tests/suite/programs/adios_transforms_read_write.c | 3 +-
tests/suite/programs/big_file.c | 8 +-
tests/suite/programs/blocks.c | 4 +-
tests/suite/programs/build_standard_dataset.c | 3 +-
tests/suite/programs/connect_to_space_subset.c | 2 +-
tests/suite/programs/examples/Makefile.am | 1 +
.../suite/programs/examples}/Makefile.in | 11 +-
.../programs/examples/attributes/CMakeLists.txt | 34 +
.../suite/programs/examples/attributes/Makefile.am | 27 +
.../programs/examples}/attributes/Makefile.in | 88 +-
.../programs/examples/attributes/attributes_C.xml | 0
.../examples/attributes/attributes_read_C.c | 46 +-
.../examples/attributes/attributes_write_C.c | 4 +-
.../programs/examples/global_array/CMakeLists.txt | 64 +
.../programs/examples/global_array/Makefile.am | 83 +
.../programs/examples/global_array}/Makefile.in | 339 +-
.../examples/global_array/global_array_C.xml | 1 -
.../examples/global_array/global_array_F.xml | 0
.../global_array_aggregate_by_color_C.c | 6 +-
.../examples/global_array/global_array_read_C.c | 19 +-
.../global_array/global_array_read_byid_noxml_C.c | 17 +-
.../global_array/global_array_read_noxml_C.c | 18 +-
.../examples/global_array/global_array_write_C.c | 10 +-
.../examples/global_array/global_array_write_F.F90 | 12 +-
.../global_array/global_array_write_byid_noxml_C.c | 30 +-
.../global_array_write_byid_noxml_F.F90 | 23 +-
.../global_array/global_array_write_noxml_C.c | 6 +-
.../global_array/global_array_write_noxml_F.F90 | 6 +-
.../examples/global_array_time/CMakeLists.txt | 47 +
.../examples/global_array_time/Makefile.am | 52 +
.../examples/global_array_time}/Makefile.in | 208 +-
.../global_array_time/global_array_time_C.xml | 0
.../global_array_time/global_array_time_F.xml | 0
.../global_array_time_read_as_file_C.c | 27 +-
.../global_array_time_read_as_stream_C.c | 38 +-
.../global_array_time/global_array_time_write_C.c | 4 +-
.../global_array_time_write_F.F90 | 4 +-
.../programs/examples/local_array/CMakeLists.txt | 33 +
.../programs/examples/local_array/Makefile.am | 24 +
.../programs/examples/local_array}/Makefile.in | 89 +-
.../examples/local_array/local_array_C.xml | 0
.../examples/local_array/local_array_read_C.c | 23 +-
.../examples/local_array/local_array_write_C.c | 4 +-
.../suite/programs/examples/scalars/CMakeLists.txt | 45 +
tests/suite/programs/examples/scalars/Makefile.am | 52 +
.../suite/programs/examples/scalars}/Makefile.in | 197 +-
.../suite/programs/examples/scalars/scalars_C.xml | 0
.../suite/programs/examples/scalars/scalars_F.xml | 0
.../programs/examples/scalars/scalars_read_C.c | 2 +-
.../programs/examples/scalars/scalars_read_F.F90 | 2 +-
.../programs/examples/scalars/scalars_write_C.c | 4 +-
.../programs/examples/scalars/scalars_write_F.F90 | 4 +-
tests/suite/programs/hashtest.c | 4 +-
tests/suite/programs/many_vars.c | 27 +-
tests/suite/programs/path_test.c | 2 +-
tests/suite/programs/reuse_dim.c | 2 +-
tests/suite/programs/selections.c | 2 +-
tests/suite/programs/set_path.c | 2 +-
tests/suite/programs/set_path_var.c | 2 +-
tests/suite/programs/transforms_writeblock_read.c | 1 +
tests/suite/programs/two_groups.c | 8 +-
tests/suite/programs/write_alternate.c | 4 +-
tests/suite/reference/attributes_bpls.txt | 16 +-
tests/suite/reference/attributes_read.txt | 12 +-
tests/suite/reference/global_array_bpls.txt | 22 +-
tests/suite/reference/global_array_no_xml_bpls.txt | 430 +-
.../suite/reference/global_array_no_xml_f_bpls.txt | 38 +-
tests/suite/reference/global_array_time_bpls.txt | 12 +-
...read.txt => global_array_time_read_as_file.txt} | 0
.../reference/global_array_time_read_as_stream.txt | 153 +
.../{arrays_bpls.txt => local_array_C_bpls.txt} | 10 +-
.../{arrays_read.txt => local_array_C_read.txt} | 0
tests/suite/reference/no_xml_write_byid_bpls.txt | 432 +-
tests/suite/reference/no_xml_write_byid_f_bpls.txt | 40 +-
tests/suite/reference/scalars_write_bpls.txt | 24 +-
.../suite/reference/transforms_read_write_bpls.txt | 22 +-
tests/suite/test.sh | 13 +-
tests/suite/tests/01_scalars.sh | 36 +-
tests/suite/tests/02_attributes.sh | 29 +-
tests/suite/tests/03_arrays.sh | 40 +-
tests/suite/tests/04_global_array.sh | 51 +-
tests/suite/tests/05_global_array_time.sh | 77 +-
tests/suite/tests/07_global_array_no_xml.sh | 52 +-
tests/suite/tests/08_amr_write_read.sh | 4 +
tests/suite/tests/09_amr_write_read_2vars.sh | 3 +
tests/suite/tests/13_write_byid.sh | 50 +-
tests/suite/tests/16_transform_write_read.sh | 2 +-
tests/suite/tests/18_aggregation_by_color.sh | 14 +-
tests/suite/tests/19_query.sh | 2 +-
toolchain/cray/README.md | 2 +
utils/CMakeLists.txt | 2 +
utils/Makefile.am | 2 +-
utils/Makefile.in | 8 +-
utils/adios_lint/CMakeLists.txt | 2 +-
utils/adios_lint/Makefile.am | 2 +-
utils/adios_lint/Makefile.in | 6 +-
utils/bp2ascii/CMakeLists.txt | 2 +-
utils/bp2ascii/Makefile.am | 2 +-
utils/bp2ascii/Makefile.in | 6 +-
utils/bp2ascii/bp2ascii.c | 2 +-
utils/bp2bp/CMakeLists.txt | 1 +
utils/bp2bp/Makefile.am | 2 +-
utils/bp2bp/Makefile.in | 7 +-
utils/bp2h5/CMakeLists.txt | 1 +
utils/bp2h5/Makefile.am | 2 +-
utils/bp2h5/Makefile.in | 7 +-
utils/bp2ncd/CMakeLists.txt | 2 +-
utils/bp2ncd/Makefile.am | 2 +-
utils/bp2ncd/Makefile.in | 6 +-
utils/bp2ncd/bp2ncd.c | 8 +-
utils/bpdiff/CMakeLists.txt | 1 +
utils/bpdiff/Makefile.am | 2 +-
utils/bpdiff/Makefile.in | 7 +-
utils/bpdump/CMakeLists.txt | 2 +-
utils/bpdump/Makefile.am | 2 +-
utils/bpdump/Makefile.in | 6 +-
utils/bpdump/bpdump.c | 74 +-
utils/bpls/CMakeLists.txt | 1 +
utils/bpls/Makefile.am | 2 +-
utils/bpls/Makefile.in | 7 +-
utils/bpls/bpls.c | 70 +-
utils/bpmeta/CMakeLists.txt | 2 +-
utils/bpmeta/Makefile.am | 2 +-
utils/bpmeta/Makefile.in | 6 +-
utils/bpmeta/bpmeta.c | 11 +-
utils/bprecover/CMakeLists.txt | 12 +
utils/bprecover/Makefile.am | 17 +
utils/{bpmeta => bprecover}/Makefile.in | 53 +-
utils/{bpdump/bpdump.c => bprecover/bprecover.c} | 890 +-
utils/bpsplit/CMakeLists.txt | 2 +-
utils/bpsplit/Makefile.am | 2 +-
utils/bpsplit/Makefile.in | 6 +-
utils/bpsplit/bpappend.c | 4 +-
utils/bpsplit/bpgettime.c | 2 +-
utils/bpsplit/bpsplit.c | 2 +-
utils/fastbit/CMakeLists.txt | 2 +-
utils/fastbit/Makefile.am | 2 +-
utils/fastbit/Makefile.in | 7 +-
utils/fastbit/adios_index_fastbit.c | 538 +-
utils/gpp/Makefile.in | 3 +
utils/list_methods/CMakeLists.txt | 2 +-
utils/list_methods/Makefile.am | 2 +-
utils/list_methods/Makefile.in | 6 +-
utils/skel/Makefile.in | 3 +
utils/skel/etc/Makefile.in | 3 +
utils/skel/src/Makefile.in | 3 +
utils/skeldump/CMakeLists.txt | 2 +-
utils/skeldump/Makefile.am | 2 +-
utils/skeldump/Makefile.in | 6 +-
wrappers/matlab/adiosload.m | 33 +
wrappers/matlab/posix_method.bp | Bin 0 -> 1257 bytes
.../matlab/posix_method.bp.dir/posix_method.bp.0 | Bin 0 -> 10373 bytes
wrappers/matlab/two_groups19.bp | 1 +
wrappers/matlab/xgc.diagnosis.bp | 1 +
wrappers/numpy/MANIFEST.in | 2 +
wrappers/numpy/README | 85 +
wrappers/numpy/adios.cpp | 25255 +++++++++++++-----
wrappers/numpy/adios.pyx | 1013 +-
wrappers/numpy/adios_mpi.cpp | 25257 ++++++++++++++-----
wrappers/numpy/adios_mpi.pyx | 1013 +-
ChangeLog => wrappers/numpy/conf/__init__.py | 0
wrappers/numpy/{ => conf}/mpiconfig.py | 0
wrappers/numpy/{ => conf}/mpidistutils.py | 0
wrappers/numpy/conf/mpiregexes.py | 75 +
wrappers/numpy/conf/mpiscanner.py | 342 +
wrappers/numpy/doc/Makefile | 192 +
wrappers/numpy/doc/source/build.rst | 55 +
wrappers/numpy/doc/source/conf.py | 290 +
wrappers/numpy/doc/source/index.rst | 28 +
wrappers/numpy/doc/source/quick.rst | 143 +
wrappers/numpy/doc/source/ref.rst | 32 +
wrappers/numpy/example/staging/README | 2 +-
wrappers/numpy/example/staging/adios_read.py | 2 +-
wrappers/numpy/example/staging/adios_write.py | 5 +-
wrappers/numpy/setup.cfg | 2 +
wrappers/numpy/setup.py | 44 +-
wrappers/numpy/setup_mpi.py | 107 +-
wrappers/numpy/test/common.py | 20 +
.../numpy/test/test_adios_timestep_unittest.py | 110 +
wrappers/numpy/test/test_adios_unittest.py | 110 +
wrappers/numpy/test/test_adios_write_unittest.py | 54 +
wrappers/numpy/test/test_adios_writer_unittest.py | 124 +
wrappers/numpy/tests/test_adios.py | 7 +-
.../tests/{test_adios.py => test_adios_matplot.py} | 5 +
wrappers/numpy/tests/test_adios_mpi.py | 9 +-
wrappers/numpy/tests/test_adios_mpi_writer.py | 51 +
wrappers/numpy/tests/test_adios_timestep.py | 2 +-
wrappers/numpy/tests/test_adios_writer.py | 43 +
422 files changed, 63662 insertions(+), 18861 deletions(-)
create mode 100755 adios_config.flags.cmake
create mode 100644 debian/patches/py3.patch
create mode 100644 examples/staging/stage_write_varyingsize/decompose_block.o
create mode 100755 examples/staging/stage_write_varyingsize/genarray_varying
create mode 100644 examples/staging/stage_write_varyingsize/genarray_varying.o
create mode 100644 examples/staging/stage_write_varyingsize/genarray_varying_comm.mod
create mode 100755 examples/staging/stage_write_varyingsize/stage_write
create mode 100644 examples/staging/stage_write_varyingsize/stage_write.o
create mode 100644 examples/staging/stage_write_varyingsize/utils.o
create mode 100644 src/public/adios_link.h
create mode 100644 src/public/adios_version.h
create mode 100644 src/public/adios_version.h.in
create mode 100644 tests/suite/programs/examples/Makefile.am
copy {examples/C/flexpath_arrays => tests/suite/programs/examples}/Makefile.in (98%)
create mode 100644 tests/suite/programs/examples/attributes/CMakeLists.txt
create mode 100644 tests/suite/programs/examples/attributes/Makefile.am
copy {examples/C => tests/suite/programs/examples}/attributes/Makefile.in (87%)
copy examples/C/attributes/attributes.xml => tests/suite/programs/examples/attributes/attributes_C.xml (100%)
copy examples/C/attributes/attributes_read.c => tests/suite/programs/examples/attributes/attributes_read_C.c (51%)
copy examples/C/attributes/attributes_write.c => tests/suite/programs/examples/attributes/attributes_write_C.c (93%)
create mode 100644 tests/suite/programs/examples/global_array/CMakeLists.txt
create mode 100644 tests/suite/programs/examples/global_array/Makefile.am
copy tests/{bp_read => suite/programs/examples/global_array}/Makefile.in (59%)
copy examples/C/global-array/adios_global.xml => tests/suite/programs/examples/global_array/global_array_C.xml (94%)
copy examples/Fortran/global-array/adios_global.xml => tests/suite/programs/examples/global_array/global_array_F.xml (100%)
copy examples/C/global-array/adios_global_aggregate_by_color.c => tests/suite/programs/examples/global_array/global_array_aggregate_by_color_C.c (94%)
copy examples/C/global-array/adios_read_global.c => tests/suite/programs/examples/global_array/global_array_read_C.c (78%)
copy examples/C/global-array/read_no_xml_write_byid.c => tests/suite/programs/examples/global_array/global_array_read_byid_noxml_C.c (84%)
copy examples/C/global-array/read_no_xml_write_byid.c => tests/suite/programs/examples/global_array/global_array_read_noxml_C.c (84%)
copy examples/C/global-array/adios_global.c => tests/suite/programs/examples/global_array/global_array_write_C.c (83%)
copy examples/Fortran/global-array/adios_global.F90 => tests/suite/programs/examples/global_array/global_array_write_F.F90 (82%)
copy examples/C/global-array/no_xml_write_byid.c => tests/suite/programs/examples/global_array/global_array_write_byid_noxml_C.c (69%)
copy examples/Fortran/global-array/no_xml_write_byid.F90 => tests/suite/programs/examples/global_array/global_array_write_byid_noxml_F.F90 (71%)
copy examples/C/global-array/adios_global_no_xml.c => tests/suite/programs/examples/global_array/global_array_write_noxml_C.c (95%)
copy examples/Fortran/global-array/adios_global_no_xml.F90 => tests/suite/programs/examples/global_array/global_array_write_noxml_F.F90 (95%)
create mode 100644 tests/suite/programs/examples/global_array_time/CMakeLists.txt
create mode 100644 tests/suite/programs/examples/global_array_time/Makefile.am
copy {examples/C/global-array-time => tests/suite/programs/examples/global_array_time}/Makefile.in (73%)
copy examples/C/global-array-time/adios_globaltime.xml => tests/suite/programs/examples/global_array_time/global_array_time_C.xml (100%)
copy examples/Fortran/global-array-time/adios_globaltime.xml => tests/suite/programs/examples/global_array_time/global_array_time_F.xml (100%)
copy examples/C/global-array-time/adios_read_globaltime.c => tests/suite/programs/examples/global_array_time/global_array_time_read_as_file_C.c (74%)
copy examples/C/global-array-time/adios_read_globaltime_streaming.c => tests/suite/programs/examples/global_array_time/global_array_time_read_as_stream_C.c (70%)
copy examples/C/global-array-time/adios_globaltime.c => tests/suite/programs/examples/global_array_time/global_array_time_write_C.c (94%)
copy examples/Fortran/global-array-time/adios_globaltime.F90 => tests/suite/programs/examples/global_array_time/global_array_time_write_F.F90 (93%)
create mode 100644 tests/suite/programs/examples/local_array/CMakeLists.txt
create mode 100644 tests/suite/programs/examples/local_array/Makefile.am
copy {examples/C/flexpath_arrays/process_select => tests/suite/programs/examples/local_array}/Makefile.in (87%)
copy examples/C/arrays/arrays.xml => tests/suite/programs/examples/local_array/local_array_C.xml (100%)
copy examples/C/arrays/arrays_read.c => tests/suite/programs/examples/local_array/local_array_read_C.c (80%)
copy examples/C/arrays/arrays_write.c => tests/suite/programs/examples/local_array/local_array_write_C.c (94%)
create mode 100644 tests/suite/programs/examples/scalars/CMakeLists.txt
create mode 100644 tests/suite/programs/examples/scalars/Makefile.am
copy {examples/C/global-array-time => tests/suite/programs/examples/scalars}/Makefile.in (76%)
copy examples/C/scalars/scalars.xml => tests/suite/programs/examples/scalars/scalars_C.xml (100%)
copy examples/Fortran/scalars/scalars.xml => tests/suite/programs/examples/scalars/scalars_F.xml (100%)
copy examples/C/scalars/scalars_read.c => tests/suite/programs/examples/scalars/scalars_read_C.c (98%)
copy examples/Fortran/scalars/scalars_read.F90 => tests/suite/programs/examples/scalars/scalars_read_F.F90 (98%)
copy examples/C/scalars/scalars_write.c => tests/suite/programs/examples/scalars/scalars_write_C.c (95%)
copy examples/Fortran/scalars/scalars_write.F90 => tests/suite/programs/examples/scalars/scalars_write_F.F90 (94%)
rename tests/suite/reference/{global_array_time_read.txt => global_array_time_read_as_file.txt} (100%)
create mode 100644 tests/suite/reference/global_array_time_read_as_stream.txt
rename tests/suite/reference/{arrays_bpls.txt => local_array_C_bpls.txt} (54%)
rename tests/suite/reference/{arrays_read.txt => local_array_C_read.txt} (100%)
create mode 100644 utils/bprecover/CMakeLists.txt
create mode 100644 utils/bprecover/Makefile.am
copy utils/{bpmeta => bprecover}/Makefile.in (92%)
copy utils/{bpdump/bpdump.c => bprecover/bprecover.c} (60%)
create mode 100644 wrappers/matlab/adiosload.m
create mode 100644 wrappers/matlab/posix_method.bp
create mode 100644 wrappers/matlab/posix_method.bp.dir/posix_method.bp.0
create mode 120000 wrappers/matlab/two_groups19.bp
create mode 120000 wrappers/matlab/xgc.diagnosis.bp
create mode 100644 wrappers/numpy/MANIFEST.in
copy ChangeLog => wrappers/numpy/conf/__init__.py (100%)
copy wrappers/numpy/{ => conf}/mpiconfig.py (100%)
copy wrappers/numpy/{ => conf}/mpidistutils.py (100%)
create mode 100644 wrappers/numpy/conf/mpiregexes.py
create mode 100644 wrappers/numpy/conf/mpiscanner.py
create mode 100644 wrappers/numpy/doc/Makefile
create mode 100644 wrappers/numpy/doc/source/build.rst
create mode 100644 wrappers/numpy/doc/source/conf.py
create mode 100644 wrappers/numpy/doc/source/index.rst
create mode 100644 wrappers/numpy/doc/source/quick.rst
create mode 100644 wrappers/numpy/doc/source/ref.rst
create mode 100644 wrappers/numpy/setup.cfg
create mode 100644 wrappers/numpy/test/common.py
create mode 100644 wrappers/numpy/test/test_adios_timestep_unittest.py
create mode 100644 wrappers/numpy/test/test_adios_unittest.py
create mode 100644 wrappers/numpy/test/test_adios_write_unittest.py
create mode 100644 wrappers/numpy/test/test_adios_writer_unittest.py
copy wrappers/numpy/tests/{test_adios.py => test_adios_matplot.py} (92%)
create mode 100644 wrappers/numpy/tests/test_adios_mpi_writer.py
create mode 100644 wrappers/numpy/tests/test_adios_writer.py
--
Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-science/packages/adios.git
More information about the debian-science-commits
mailing list