[adios] branch master updated (ac6097b -> 5fe9479)
Alastair McKinstry
mckinstry at moszumanska.debian.org
Thu Aug 20 06:41:29 UTC 2015
This is an automated email from the git hooks/post-receive script.
mckinstry pushed a change to branch master
in repository adios.
from ac6097b Change bash_completions dir
adds ad23e0e Prep for unstable
adds 02485cb Move files that should be in python-adios
adds ab1e7b1 remove quotes that break pkg-config proper output; install
adds d96be35 Prep 1.8.0-1 for release
adds d8115ee Fix install paths
adds 5b51184 Ensure all CFLAGS are included in build
adds 7c650a5 Put Vcs-Git in canonical form
adds a6bf61c #789464: Make examples multiarch safe
adds 4051801 Set CFLAGS so we get buildflags properly
adds c7da19d Fix Breaks/Replaces for file moves
adds e3d6ad2 Build against libnetcdff-dev for netcdf-transition.
adds 00fa7b3 Patch from Steve Langasek for python3.5 transition. Closes: #793449
adds 8aa74ec Stay on netcdf-dev only in unstable before netcdf-fortran transition. Closes: #790230.
adds ade5a80 Patch from Steve Langasek for python3.5 transition. Closes: #793449
adds f1b6f4c Merge branch 'debian/master' of ssh://git.debian.org/git/debian-science/packages/adios into debian/master
adds 5935942 upstream 1.9.0
adds d1472ed Merge tag 'upstream/1.9.0' into debian/master
adds ee415a7 Refresh patches
adds 8dd83b8 Refresh patches
adds a9be144 WIP: redo python3 work
adds 5fe9479 WIP: update patch and rules
No new revisions were added by this update.
Summary of changes:
CMakeLists.txt | 69 +-
INSTALL | 4 +-
Makefile.am | 3 +-
Makefile.in | 11 +-
NEWS | 22 +
adios_config.flags.cmake | 39 +
cmake_init | 4 +-
config.h.cmake | 9 -
config.h.in | 9 -
config/ac_dataspaces.m4 | 6 +-
config/ac_fastbit.m4 | 2 +-
configure | 384 +-
configure.ac | 52 +-
debian/changelog | 40 +-
debian/control | 14 +-
debian/libadios-bin.install | 3 +-
debian/libadios-dev.install | 3 +-
debian/patches/autotools-fixes.patch | 10 +-
debian/patches/debian_paths.patch | 24 +-
debian/patches/exclude_cmake.patch | 32 +-
debian/patches/mpi4py_fix.patch | 14 +-
debian/patches/multiarch_safe.patch | 10352 ++++++++
debian/patches/netcdf-fix.patch | 8 +-
debian/patches/numpy_paths.patch | 34 +-
debian/patches/pkgconfig.patch | 851 +-
debian/patches/py3.patch | 287 +
debian/patches/python3.patch | 172 +-
debian/patches/python_wrapper.patch | 62 +-
debian/patches/series | 2 +
debian/python3-adios.install | 1 +
debian/rules | 40 +-
examples/C/Makefile.in | 3 +
examples/C/arrays/CMakeLists.txt | 1 +
examples/C/arrays/Makefile.am | 2 +-
examples/C/arrays/Makefile.in | 7 +-
examples/C/attributes/CMakeLists.txt | 1 +
examples/C/attributes/Makefile.am | 2 +-
examples/C/attributes/Makefile.in | 7 +-
examples/C/attributes/attributes_read.c | 37 +-
examples/C/flexpath_arrays/Makefile.in | 3 +
.../global_range_select/CMakeLists.txt | 1 +
.../global_range_select/Makefile.am | 2 +-
.../global_range_select/Makefile.in | 7 +-
.../flexpath_arrays/process_select/CMakeLists.txt | 1 +
.../C/flexpath_arrays/process_select/Makefile.am | 2 +-
.../C/flexpath_arrays/process_select/Makefile.in | 7 +-
examples/C/global-array-time/CMakeLists.txt | 1 +
examples/C/global-array-time/Makefile.am | 2 +-
examples/C/global-array-time/Makefile.in | 7 +-
examples/C/global-array/CMakeLists.txt | 1 +
examples/C/global-array/Makefile.am | 2 +-
examples/C/global-array/Makefile.in | 7 +-
examples/C/global-array/adios_global.xml | 2 +-
examples/C/global-array/no_xml_write_byid.c | 24 +-
examples/C/icee_arrays/Makefile.in | 3 +
examples/C/icee_arrays/array/CMakeLists.txt | 1 +
examples/C/icee_arrays/array/Makefile.am | 2 +-
examples/C/icee_arrays/array/Makefile.in | 7 +-
examples/C/manual/CMakeLists.txt | 1 +
examples/C/manual/Makefile.am | 2 +-
examples/C/manual/Makefile.in | 7 +-
examples/C/query/CMakeLists.txt | 1 +
examples/C/query/Makefile.am | 2 +-
examples/C/query/Makefile.in | 7 +-
examples/C/read_all/CMakeLists.txt | 1 +
examples/C/read_all/Makefile.am | 2 +-
examples/C/read_all/Makefile.in | 7 +-
examples/C/scalars/CMakeLists.txt | 1 +
examples/C/scalars/Makefile.am | 2 +-
examples/C/scalars/Makefile.in | 7 +-
examples/C/schema/CMakeLists.txt | 1 +
examples/C/schema/Makefile.am | 2 +-
examples/C/schema/Makefile.in | 7 +-
examples/C/stat/CMakeLists.txt | 1 +
examples/C/stat/Makefile.am | 2 +-
examples/C/stat/Makefile.in | 7 +-
examples/C/transforms/CMakeLists.txt | 1 +
examples/C/transforms/Makefile.am | 2 +-
examples/C/transforms/Makefile.in | 8 +-
examples/Fortran/Makefile.in | 3 +
examples/Fortran/arrays/CMakeLists.txt | 2 +-
examples/Fortran/arrays/Makefile.am | 2 +-
examples/Fortran/arrays/Makefile.in | 6 +-
examples/Fortran/global-array-time/CMakeLists.txt | 2 +-
examples/Fortran/global-array-time/Makefile.am | 2 +-
examples/Fortran/global-array-time/Makefile.in | 6 +-
examples/Fortran/global-array/CMakeLists.txt | 2 +-
examples/Fortran/global-array/Makefile.am | 2 +-
examples/Fortran/global-array/Makefile.in | 6 +-
.../Fortran/global-array/no_xml_write_byid.F90 | 21 +
examples/Fortran/scalars/CMakeLists.txt | 2 +-
examples/Fortran/scalars/Makefile.am | 2 +-
examples/Fortran/scalars/Makefile.in | 6 +-
examples/Fortran/schema/CMakeLists.txt | 2 +-
examples/Fortran/schema/Makefile.am | 2 +-
examples/Fortran/schema/Makefile.in | 6 +-
examples/Makefile.in | 3 +
examples/coupling/coupling_reader_2D.F90 | 4 +-
examples/coupling/coupling_writer_2D.F90 | 4 +-
examples/staging/stage_write/genarray_stream.F90 | 4 +-
.../stage_write_varyingsize/decompose_block.o | Bin 0 -> 9968 bytes
.../stage_write_varyingsize/genarray_varying | Bin 0 -> 5254828 bytes
.../stage_write_varyingsize/genarray_varying.F90 | 4 +-
.../stage_write_varyingsize/genarray_varying.o | Bin 0 -> 92096 bytes
.../genarray_varying_comm.mod | 122 +
.../staging/stage_write_varyingsize/stage_write | Bin 0 -> 4501675 bytes
.../staging/stage_write_varyingsize/stage_write.o | Bin 0 -> 55448 bytes
examples/staging/stage_write_varyingsize/utils.o | Bin 0 -> 23680 bytes
runconf | 68 +-
src/CMakeLists.txt | 5 +-
src/Makefile.am | 38 +-
src/Makefile.in | 1207 +-
src/core/adios.c | 19 +-
src/core/adios_bp_v1.c | 248 +-
src/core/adios_bp_v1.h | 17 +-
src/core/adios_internals.c | 520 +-
src/core/adios_internals.h | 33 +-
src/core/adios_internals_mxml.c | 165 +-
src/core/adios_logger.h | 8 +
src/core/adios_read.c | 10 +
src/core/adios_read_hooks.c | 15 +-
src/core/adios_transport_hooks.c | 17 +-
src/core/adios_transport_hooks.h | 4 +-
src/core/adiosf.c | 110 +-
src/core/adiosf_defs_mod.f90 | 2 +
src/core/adiosf_write_mod.f90 | 290 +-
src/core/bp_types.h | 13 +-
src/core/bp_utils.c | 238 +-
src/core/bp_utils.h | 7 +-
src/core/common_adios.c | 213 +-
src/core/common_adios.h | 5 +-
src/core/common_read.c | 214 +-
src/core/common_read.h | 3 +
src/core/transforms/adios_transforms_common.c | 4 +-
src/core/transforms/adios_transforms_write.c | 21 +-
src/core/util.c | 38 +
src/core/util.h | 6 +
src/public/adios.h | 16 +-
src/public/adios_link.h | 28 +
src/public/adios_read_ext.h | 94 +-
src/public/adios_read_v1.h | 1 +
src/public/adios_read_v2.h | 53 +-
src/public/adios_schema.h | 18 +-
src/public/adios_selection.h | 25 +-
src/public/adios_types.h | 4 +
src/public/adios_version.h | 41 +
src/public/adios_version.h.in | 41 +
src/query/common_query.c | 46 +-
src/query/fastbit_adios.c | 295 +-
src/query/fastbit_adios.h | 29 +-
src/query/query_alac.c | 83 +-
src/query/query_fastbit.c | 2234 +-
src/query/query_utils.c | 7 +
src/query/query_utils.h | 3 +-
src/read/read_bp.c | 84 +-
src/read/read_bp_staged.c | 6 +-
src/read/read_dataspaces.c | 2 +
src/read/read_dimes.c | 2 +
src/read/read_flexpath.c | 642 +-
src/read/read_icee.c | 3 +-
src/transforms/adios_transform_alacrity_write.c | 4 +-
src/transforms/adios_transform_aplod_write.c | 4 +-
src/transforms/adios_transform_bzip2_write.c | 4 +-
src/transforms/adios_transform_isobar_write.c | 4 +-
src/transforms/adios_transform_szip_write.c | 4 +-
src/transforms/adios_transform_template_write.c | 4 +-
src/transforms/adios_transform_zlib_write.c | 4 +-
src/write/adios_dataspaces.c | 10 +-
src/write/adios_datatap.c | 2 +-
src/write/adios_dimes.c | 10 +-
src/write/adios_flexpath.c | 345 +-
src/write/adios_icee.c | 4 +-
src/write/adios_mpi.c | 40 +-
src/write/adios_mpi_amr.c | 458 +-
src/write/adios_mpi_bgq.c | 155 +-
src/write/adios_mpi_lustre.c | 61 +-
src/write/adios_nc4.c | 26 +-
src/write/adios_nssi.c | 2 +-
src/write/adios_phdf5.c | 26 +-
src/write/adios_posix.c | 110 +-
src/write/adios_posix1.c | 27 +-
src/write/adios_var_merge.c | 34 +-
tests/C/CMakeLists.txt | 1 +
tests/C/Makefile.am | 2 +-
tests/C/Makefile.in | 7 +-
tests/C/fgr_tests/CMakeLists.txt | 1 +
tests/C/fgr_tests/Makefile.am | 2 +-
tests/C/fgr_tests/Makefile.in | 7 +-
.../C/flexpath_tests/1D_arr_global/CMakeLists.txt | 1 +
tests/C/flexpath_tests/1D_arr_global/Makefile.am | 2 +-
tests/C/flexpath_tests/1D_arr_global/Makefile.in | 8 +-
.../1D_arr_global_noxml/CMakeLists.txt | 1 +
.../flexpath_tests/1D_arr_global_noxml/Makefile.am | 2 +-
.../flexpath_tests/1D_arr_global_noxml/Makefile.in | 8 +-
tests/C/flexpath_tests/Makefile.in | 3 +
.../global_range_select/CMakeLists.txt | 1 +
.../flexpath_tests/global_range_select/Makefile.am | 2 +-
.../flexpath_tests/global_range_select/Makefile.in | 8 +-
tests/C/flexpath_tests/maya_append/CMakeLists.txt | 1 +
tests/C/flexpath_tests/maya_append/Makefile.am | 2 +-
tests/C/flexpath_tests/maya_append/Makefile.in | 8 +-
tests/C/flexpath_tests/maya_noxml/CMakeLists.txt | 1 +
tests/C/flexpath_tests/maya_noxml/Makefile.am | 2 +-
tests/C/flexpath_tests/maya_noxml/Makefile.in | 8 +-
tests/C/flexpath_tests/scalar/CMakeLists.txt | 1 +
tests/C/flexpath_tests/scalar/Makefile.am | 2 +-
tests/C/flexpath_tests/scalar/Makefile.in | 8 +-
tests/C/query/Makefile.in | 3 +
tests/C/query/alacrity/CMakeLists.txt | 1 +
tests/C/query/alacrity/Makefile.am | 2 +-
tests/C/query/alacrity/Makefile.in | 6 +-
tests/C/query/common/CMakeLists.txt | 1 +
tests/C/query/common/Makefile.am | 2 +-
tests/C/query/common/Makefile.in | 6 +-
tests/C/query/fastbit/CMakeLists.txt | 1 +
tests/C/query/fastbit/Makefile.am | 4 +-
tests/C/query/fastbit/Makefile.in | 8 +-
tests/C/query/fastbit/fastbit_tests.c | 262 +-
tests/Fortran/CMakeLists.txt | 2 +-
tests/Fortran/Makefile.am | 2 +-
tests/Fortran/Makefile.in | 6 +-
tests/Makefile.in | 3 +
tests/bp_read/CMakeLists.txt | 2 +-
tests/bp_read/Makefile.am | 2 +-
tests/bp_read/Makefile.in | 7 +-
tests/bp_read/bp_read_f.F90 | 4 +-
tests/bp_read/bp_read_f_v1.F90 | 4 +-
tests/genarray/CMakeLists.txt | 2 +-
tests/genarray/Makefile.am | 2 +-
tests/genarray/Makefile.in | 6 +-
tests/genarray/copyarray.F90 | 4 +-
tests/genarray/copyarray2D.F90 | 4 +-
tests/genarray/genarray.F90 | 4 +-
tests/genarray/genarray2D.F90 | 4 +-
tests/suite/Makefile.in | 3 +
tests/suite/programs/CMakeLists.txt | 1 +
tests/suite/programs/Makefile.am | 10 +-
tests/suite/programs/Makefile.in | 226 +-
tests/suite/programs/adios_transforms.xml | 2 +-
tests/suite/programs/adios_transforms_read_write.c | 3 +-
tests/suite/programs/big_file.c | 8 +-
tests/suite/programs/blocks.c | 4 +-
tests/suite/programs/build_standard_dataset.c | 3 +-
tests/suite/programs/connect_to_space_subset.c | 2 +-
tests/suite/programs/examples/Makefile.am | 1 +
.../suite/programs/examples}/Makefile.in | 11 +-
.../programs/examples/attributes/CMakeLists.txt | 34 +
.../suite/programs/examples/attributes/Makefile.am | 27 +
.../programs/examples}/attributes/Makefile.in | 88 +-
.../programs/examples/attributes/attributes_C.xml | 0
.../examples/attributes/attributes_read_C.c | 46 +-
.../examples/attributes/attributes_write_C.c | 4 +-
.../programs/examples/global_array/CMakeLists.txt | 64 +
.../programs/examples/global_array/Makefile.am | 83 +
.../programs/examples/global_array}/Makefile.in | 339 +-
.../examples/global_array/global_array_C.xml | 1 -
.../examples/global_array/global_array_F.xml | 0
.../global_array_aggregate_by_color_C.c | 6 +-
.../examples/global_array/global_array_read_C.c | 19 +-
.../global_array/global_array_read_byid_noxml_C.c | 17 +-
.../global_array/global_array_read_noxml_C.c | 18 +-
.../examples/global_array/global_array_write_C.c | 10 +-
.../examples/global_array/global_array_write_F.F90 | 12 +-
.../global_array/global_array_write_byid_noxml_C.c | 30 +-
.../global_array_write_byid_noxml_F.F90 | 23 +-
.../global_array/global_array_write_noxml_C.c | 6 +-
.../global_array/global_array_write_noxml_F.F90 | 6 +-
.../examples/global_array_time/CMakeLists.txt | 47 +
.../examples/global_array_time/Makefile.am | 52 +
.../examples/global_array_time}/Makefile.in | 208 +-
.../global_array_time/global_array_time_C.xml | 0
.../global_array_time/global_array_time_F.xml | 0
.../global_array_time_read_as_file_C.c | 27 +-
.../global_array_time_read_as_stream_C.c | 38 +-
.../global_array_time/global_array_time_write_C.c | 4 +-
.../global_array_time_write_F.F90 | 4 +-
.../programs/examples/local_array/CMakeLists.txt | 33 +
.../programs/examples/local_array/Makefile.am | 24 +
.../programs/examples/local_array}/Makefile.in | 89 +-
.../examples/local_array/local_array_C.xml | 0
.../examples/local_array/local_array_read_C.c | 23 +-
.../examples/local_array/local_array_write_C.c | 4 +-
.../suite/programs/examples/scalars/CMakeLists.txt | 45 +
tests/suite/programs/examples/scalars/Makefile.am | 52 +
.../suite/programs/examples/scalars}/Makefile.in | 197 +-
.../suite/programs/examples/scalars/scalars_C.xml | 0
.../suite/programs/examples/scalars/scalars_F.xml | 0
.../programs/examples/scalars/scalars_read_C.c | 2 +-
.../programs/examples/scalars/scalars_read_F.F90 | 2 +-
.../programs/examples/scalars/scalars_write_C.c | 4 +-
.../programs/examples/scalars/scalars_write_F.F90 | 4 +-
tests/suite/programs/hashtest.c | 4 +-
tests/suite/programs/many_vars.c | 27 +-
tests/suite/programs/path_test.c | 2 +-
tests/suite/programs/reuse_dim.c | 2 +-
tests/suite/programs/selections.c | 2 +-
tests/suite/programs/set_path.c | 2 +-
tests/suite/programs/set_path_var.c | 2 +-
tests/suite/programs/transforms_writeblock_read.c | 1 +
tests/suite/programs/two_groups.c | 8 +-
tests/suite/programs/write_alternate.c | 4 +-
tests/suite/reference/attributes_bpls.txt | 16 +-
tests/suite/reference/attributes_read.txt | 12 +-
tests/suite/reference/global_array_bpls.txt | 22 +-
tests/suite/reference/global_array_no_xml_bpls.txt | 430 +-
.../suite/reference/global_array_no_xml_f_bpls.txt | 38 +-
tests/suite/reference/global_array_time_bpls.txt | 12 +-
...read.txt => global_array_time_read_as_file.txt} | 0
.../reference/global_array_time_read_as_stream.txt | 153 +
.../{arrays_bpls.txt => local_array_C_bpls.txt} | 10 +-
.../{arrays_read.txt => local_array_C_read.txt} | 0
tests/suite/reference/no_xml_write_byid_bpls.txt | 432 +-
tests/suite/reference/no_xml_write_byid_f_bpls.txt | 40 +-
tests/suite/reference/scalars_write_bpls.txt | 24 +-
.../suite/reference/transforms_read_write_bpls.txt | 22 +-
tests/suite/test.sh | 13 +-
tests/suite/tests/01_scalars.sh | 36 +-
tests/suite/tests/02_attributes.sh | 29 +-
tests/suite/tests/03_arrays.sh | 40 +-
tests/suite/tests/04_global_array.sh | 51 +-
tests/suite/tests/05_global_array_time.sh | 77 +-
tests/suite/tests/07_global_array_no_xml.sh | 52 +-
tests/suite/tests/08_amr_write_read.sh | 4 +
tests/suite/tests/09_amr_write_read_2vars.sh | 3 +
tests/suite/tests/13_write_byid.sh | 50 +-
tests/suite/tests/16_transform_write_read.sh | 2 +-
tests/suite/tests/18_aggregation_by_color.sh | 14 +-
tests/suite/tests/19_query.sh | 2 +-
toolchain/cray/README.md | 2 +
utils/CMakeLists.txt | 2 +
utils/Makefile.am | 2 +-
utils/Makefile.in | 8 +-
utils/adios_lint/CMakeLists.txt | 2 +-
utils/adios_lint/Makefile.am | 2 +-
utils/adios_lint/Makefile.in | 6 +-
utils/bp2ascii/CMakeLists.txt | 2 +-
utils/bp2ascii/Makefile.am | 2 +-
utils/bp2ascii/Makefile.in | 6 +-
utils/bp2ascii/bp2ascii.c | 2 +-
utils/bp2bp/CMakeLists.txt | 1 +
utils/bp2bp/Makefile.am | 2 +-
utils/bp2bp/Makefile.in | 7 +-
utils/bp2h5/CMakeLists.txt | 1 +
utils/bp2h5/Makefile.am | 2 +-
utils/bp2h5/Makefile.in | 7 +-
utils/bp2ncd/CMakeLists.txt | 2 +-
utils/bp2ncd/Makefile.am | 2 +-
utils/bp2ncd/Makefile.in | 6 +-
utils/bp2ncd/bp2ncd.c | 8 +-
utils/bpdiff/CMakeLists.txt | 1 +
utils/bpdiff/Makefile.am | 2 +-
utils/bpdiff/Makefile.in | 7 +-
utils/bpdump/CMakeLists.txt | 2 +-
utils/bpdump/Makefile.am | 2 +-
utils/bpdump/Makefile.in | 6 +-
utils/bpdump/bpdump.c | 74 +-
utils/bpls/CMakeLists.txt | 1 +
utils/bpls/Makefile.am | 2 +-
utils/bpls/Makefile.in | 7 +-
utils/bpls/bpls.c | 70 +-
utils/bpmeta/CMakeLists.txt | 2 +-
utils/bpmeta/Makefile.am | 2 +-
utils/bpmeta/Makefile.in | 6 +-
utils/bpmeta/bpmeta.c | 11 +-
utils/bprecover/CMakeLists.txt | 12 +
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utils/{bpmeta => bprecover}/Makefile.in | 53 +-
utils/{bpdump/bpdump.c => bprecover/bprecover.c} | 890 +-
utils/bpsplit/CMakeLists.txt | 2 +-
utils/bpsplit/Makefile.am | 2 +-
utils/bpsplit/Makefile.in | 6 +-
utils/bpsplit/bpappend.c | 4 +-
utils/bpsplit/bpgettime.c | 2 +-
utils/bpsplit/bpsplit.c | 2 +-
utils/fastbit/CMakeLists.txt | 2 +-
utils/fastbit/Makefile.am | 2 +-
utils/fastbit/Makefile.in | 7 +-
utils/fastbit/adios_index_fastbit.c | 538 +-
utils/gpp/Makefile.in | 3 +
utils/list_methods/CMakeLists.txt | 2 +-
utils/list_methods/Makefile.am | 2 +-
utils/list_methods/Makefile.in | 6 +-
utils/skel/Makefile.in | 3 +
utils/skel/etc/Makefile.in | 3 +
utils/skel/src/Makefile.in | 3 +
utils/skeldump/CMakeLists.txt | 2 +-
utils/skeldump/Makefile.am | 2 +-
utils/skeldump/Makefile.in | 6 +-
wrappers/matlab/adiosload.m | 33 +
wrappers/matlab/posix_method.bp | Bin 0 -> 1257 bytes
.../matlab/posix_method.bp.dir/posix_method.bp.0 | Bin 0 -> 10373 bytes
wrappers/matlab/two_groups19.bp | 1 +
wrappers/matlab/xgc.diagnosis.bp | 1 +
wrappers/numpy/MANIFEST.in | 2 +
wrappers/numpy/README | 85 +
wrappers/numpy/adios.cpp | 25255 +++++++++++++-----
wrappers/numpy/adios.pyx | 1013 +-
wrappers/numpy/adios_mpi.cpp | 25257 ++++++++++++++-----
wrappers/numpy/adios_mpi.pyx | 1013 +-
ChangeLog => wrappers/numpy/conf/__init__.py | 0
wrappers/numpy/{ => conf}/mpiconfig.py | 0
wrappers/numpy/{ => conf}/mpidistutils.py | 0
wrappers/numpy/conf/mpiregexes.py | 75 +
wrappers/numpy/conf/mpiscanner.py | 342 +
wrappers/numpy/doc/Makefile | 192 +
wrappers/numpy/doc/source/build.rst | 55 +
wrappers/numpy/doc/source/conf.py | 290 +
wrappers/numpy/doc/source/index.rst | 28 +
wrappers/numpy/doc/source/quick.rst | 143 +
wrappers/numpy/doc/source/ref.rst | 32 +
wrappers/numpy/example/staging/README | 2 +-
wrappers/numpy/example/staging/adios_read.py | 2 +-
wrappers/numpy/example/staging/adios_write.py | 5 +-
wrappers/numpy/setup.cfg | 2 +
wrappers/numpy/setup.py | 44 +-
wrappers/numpy/setup_mpi.py | 107 +-
wrappers/numpy/test/common.py | 20 +
.../numpy/test/test_adios_timestep_unittest.py | 110 +
wrappers/numpy/test/test_adios_unittest.py | 110 +
wrappers/numpy/test/test_adios_write_unittest.py | 54 +
wrappers/numpy/test/test_adios_writer_unittest.py | 124 +
wrappers/numpy/tests/test_adios.py | 7 +-
.../tests/{test_adios.py => test_adios_matplot.py} | 5 +
wrappers/numpy/tests/test_adios_mpi.py | 9 +-
wrappers/numpy/tests/test_adios_mpi_writer.py | 51 +
wrappers/numpy/tests/test_adios_timestep.py | 2 +-
wrappers/numpy/tests/test_adios_writer.py | 43 +
427 files changed, 63847 insertions(+), 18178 deletions(-)
create mode 100755 adios_config.flags.cmake
create mode 100644 debian/patches/multiarch_safe.patch
create mode 100644 debian/patches/py3.patch
create mode 100644 examples/staging/stage_write_varyingsize/decompose_block.o
create mode 100755 examples/staging/stage_write_varyingsize/genarray_varying
create mode 100644 examples/staging/stage_write_varyingsize/genarray_varying.o
create mode 100644 examples/staging/stage_write_varyingsize/genarray_varying_comm.mod
create mode 100755 examples/staging/stage_write_varyingsize/stage_write
create mode 100644 examples/staging/stage_write_varyingsize/stage_write.o
create mode 100644 examples/staging/stage_write_varyingsize/utils.o
create mode 100644 src/public/adios_link.h
create mode 100644 src/public/adios_version.h
create mode 100644 src/public/adios_version.h.in
create mode 100644 tests/suite/programs/examples/Makefile.am
copy {examples/C/flexpath_arrays => tests/suite/programs/examples}/Makefile.in (98%)
create mode 100644 tests/suite/programs/examples/attributes/CMakeLists.txt
create mode 100644 tests/suite/programs/examples/attributes/Makefile.am
copy {examples/C => tests/suite/programs/examples}/attributes/Makefile.in (87%)
copy examples/C/attributes/attributes.xml => tests/suite/programs/examples/attributes/attributes_C.xml (100%)
copy examples/C/attributes/attributes_read.c => tests/suite/programs/examples/attributes/attributes_read_C.c (51%)
copy examples/C/attributes/attributes_write.c => tests/suite/programs/examples/attributes/attributes_write_C.c (93%)
create mode 100644 tests/suite/programs/examples/global_array/CMakeLists.txt
create mode 100644 tests/suite/programs/examples/global_array/Makefile.am
copy tests/{bp_read => suite/programs/examples/global_array}/Makefile.in (59%)
copy examples/C/global-array/adios_global.xml => tests/suite/programs/examples/global_array/global_array_C.xml (94%)
copy examples/Fortran/global-array/adios_global.xml => tests/suite/programs/examples/global_array/global_array_F.xml (100%)
copy examples/C/global-array/adios_global_aggregate_by_color.c => tests/suite/programs/examples/global_array/global_array_aggregate_by_color_C.c (94%)
copy examples/C/global-array/adios_read_global.c => tests/suite/programs/examples/global_array/global_array_read_C.c (78%)
copy examples/C/global-array/read_no_xml_write_byid.c => tests/suite/programs/examples/global_array/global_array_read_byid_noxml_C.c (84%)
copy examples/C/global-array/read_no_xml_write_byid.c => tests/suite/programs/examples/global_array/global_array_read_noxml_C.c (84%)
copy examples/C/global-array/adios_global.c => tests/suite/programs/examples/global_array/global_array_write_C.c (83%)
copy examples/Fortran/global-array/adios_global.F90 => tests/suite/programs/examples/global_array/global_array_write_F.F90 (82%)
copy examples/C/global-array/no_xml_write_byid.c => tests/suite/programs/examples/global_array/global_array_write_byid_noxml_C.c (69%)
copy examples/Fortran/global-array/no_xml_write_byid.F90 => tests/suite/programs/examples/global_array/global_array_write_byid_noxml_F.F90 (71%)
copy examples/C/global-array/adios_global_no_xml.c => tests/suite/programs/examples/global_array/global_array_write_noxml_C.c (95%)
copy examples/Fortran/global-array/adios_global_no_xml.F90 => tests/suite/programs/examples/global_array/global_array_write_noxml_F.F90 (95%)
create mode 100644 tests/suite/programs/examples/global_array_time/CMakeLists.txt
create mode 100644 tests/suite/programs/examples/global_array_time/Makefile.am
copy {examples/C/global-array-time => tests/suite/programs/examples/global_array_time}/Makefile.in (73%)
copy examples/C/global-array-time/adios_globaltime.xml => tests/suite/programs/examples/global_array_time/global_array_time_C.xml (100%)
copy examples/Fortran/global-array-time/adios_globaltime.xml => tests/suite/programs/examples/global_array_time/global_array_time_F.xml (100%)
copy examples/C/global-array-time/adios_read_globaltime.c => tests/suite/programs/examples/global_array_time/global_array_time_read_as_file_C.c (74%)
copy examples/C/global-array-time/adios_read_globaltime_streaming.c => tests/suite/programs/examples/global_array_time/global_array_time_read_as_stream_C.c (70%)
copy examples/C/global-array-time/adios_globaltime.c => tests/suite/programs/examples/global_array_time/global_array_time_write_C.c (94%)
copy examples/Fortran/global-array-time/adios_globaltime.F90 => tests/suite/programs/examples/global_array_time/global_array_time_write_F.F90 (93%)
create mode 100644 tests/suite/programs/examples/local_array/CMakeLists.txt
create mode 100644 tests/suite/programs/examples/local_array/Makefile.am
copy {examples/C/flexpath_arrays/process_select => tests/suite/programs/examples/local_array}/Makefile.in (87%)
copy examples/C/arrays/arrays.xml => tests/suite/programs/examples/local_array/local_array_C.xml (100%)
copy examples/C/arrays/arrays_read.c => tests/suite/programs/examples/local_array/local_array_read_C.c (80%)
copy examples/C/arrays/arrays_write.c => tests/suite/programs/examples/local_array/local_array_write_C.c (94%)
create mode 100644 tests/suite/programs/examples/scalars/CMakeLists.txt
create mode 100644 tests/suite/programs/examples/scalars/Makefile.am
copy {examples/C/global-array-time => tests/suite/programs/examples/scalars}/Makefile.in (76%)
copy examples/C/scalars/scalars.xml => tests/suite/programs/examples/scalars/scalars_C.xml (100%)
copy examples/Fortran/scalars/scalars.xml => tests/suite/programs/examples/scalars/scalars_F.xml (100%)
copy examples/C/scalars/scalars_read.c => tests/suite/programs/examples/scalars/scalars_read_C.c (98%)
copy examples/Fortran/scalars/scalars_read.F90 => tests/suite/programs/examples/scalars/scalars_read_F.F90 (98%)
copy examples/C/scalars/scalars_write.c => tests/suite/programs/examples/scalars/scalars_write_C.c (95%)
copy examples/Fortran/scalars/scalars_write.F90 => tests/suite/programs/examples/scalars/scalars_write_F.F90 (94%)
rename tests/suite/reference/{global_array_time_read.txt => global_array_time_read_as_file.txt} (100%)
create mode 100644 tests/suite/reference/global_array_time_read_as_stream.txt
rename tests/suite/reference/{arrays_bpls.txt => local_array_C_bpls.txt} (54%)
rename tests/suite/reference/{arrays_read.txt => local_array_C_read.txt} (100%)
create mode 100644 utils/bprecover/CMakeLists.txt
create mode 100644 utils/bprecover/Makefile.am
copy utils/{bpmeta => bprecover}/Makefile.in (92%)
copy utils/{bpdump/bpdump.c => bprecover/bprecover.c} (60%)
create mode 100644 wrappers/matlab/adiosload.m
create mode 100644 wrappers/matlab/posix_method.bp
create mode 100644 wrappers/matlab/posix_method.bp.dir/posix_method.bp.0
create mode 120000 wrappers/matlab/two_groups19.bp
create mode 120000 wrappers/matlab/xgc.diagnosis.bp
create mode 100644 wrappers/numpy/MANIFEST.in
copy ChangeLog => wrappers/numpy/conf/__init__.py (100%)
copy wrappers/numpy/{ => conf}/mpiconfig.py (100%)
copy wrappers/numpy/{ => conf}/mpidistutils.py (100%)
create mode 100644 wrappers/numpy/conf/mpiregexes.py
create mode 100644 wrappers/numpy/conf/mpiscanner.py
create mode 100644 wrappers/numpy/doc/Makefile
create mode 100644 wrappers/numpy/doc/source/build.rst
create mode 100644 wrappers/numpy/doc/source/conf.py
create mode 100644 wrappers/numpy/doc/source/index.rst
create mode 100644 wrappers/numpy/doc/source/quick.rst
create mode 100644 wrappers/numpy/doc/source/ref.rst
create mode 100644 wrappers/numpy/setup.cfg
create mode 100644 wrappers/numpy/test/common.py
create mode 100644 wrappers/numpy/test/test_adios_timestep_unittest.py
create mode 100644 wrappers/numpy/test/test_adios_unittest.py
create mode 100644 wrappers/numpy/test/test_adios_write_unittest.py
create mode 100644 wrappers/numpy/test/test_adios_writer_unittest.py
copy wrappers/numpy/tests/{test_adios.py => test_adios_matplot.py} (92%)
create mode 100644 wrappers/numpy/tests/test_adios_mpi_writer.py
create mode 100644 wrappers/numpy/tests/test_adios_writer.py
--
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