[python-escript] branch debian updated (ed1073c -> 5acc69b)
Joel Fenwick
jfenwick-guest at moszumanska.debian.org
Tue Dec 1 04:06:51 UTC 2015
This is an automated email from the git hooks/post-receive script.
jfenwick-guest pushed a change to branch debian
in repository python-escript.
from ed1073c Added debian buildflags to jessie. Fixed doco _static
new 7977853 Escript release 4.1
new 5acc69b Debianisation fixes for 4.1.
The 2 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails. The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.
Summary of changes:
SConstruct | 14 +-
cusplibrary/build/build-env.py | 35 +-
cusplibrary/build/nvcc.py | 17 +
cusplibrary/performance/spmv/scripts/benchmark.py | 18 +
cusplibrary/testing/data/random_10x10/generator.py | 18 +
debian/changelog | 4 +-
debian/control | 129 +-
debian/copyright | 320 +--
debian/patches/dateless-gz | 23 +
debian/patches/doxygenfix | 19 +
debian/patches/grammar-errors | 36 +
debian/patches/mpi-gaol | 33 +
debian/patches/release-sanity | 69 +
debian/patches/relocating-debian-dir | 24 +
debian/patches/series | 6 +
debian/python-escript-doc.dirs | 1 -
debian/python-escript-doc.doc-base.1 | 8 +
debian/python-escript-doc.doc-base.2 | 12 +
debian/python-escript-doc.doc-base.3 | 10 +
debian/python-escript-doc.doc-base.4 | 10 +
debian/python-escript-doc.doc-base.5 | 10 +
debian/python-escript-doc.doc-base.6 | 9 +
debian/python-escript-doc.install | 3 +-
debian/python-escript-mpi.dirs | 4 -
debian/python-escript-mpi.lintian-overrides | 4 +
debian/python-escript.dirs | 4 -
debian/python-escript.lintian-overrides | 5 +
debian/python3-escript-mpi.dirs | 4 -
debian/python3-escript-mpi.lintian-overrides | 4 +
debian/python3-escript.dirs | 4 -
debian/python3-escript.lintian-overrides | 3 +
debian/rules | 1 +
debian/utils/cppy.py | 27 +-
debian/utils/getsubst | 1 +
debian/utils/subst/{utopic.subst => vivid.subst} | 0
debian/watch | 2 +
doc/SConscript | 18 +-
doc/cookbook/example01.tex | 2 +-
doc/cookbook/example07.tex | 2 +-
doc/cookbook/example10.tex | 12 +-
doc/cookbook/verinfo.tex | 8 +-
doc/doxygen/doxygen_esys | 2396 ++++++++++++--------
doc/examples/cookbook/cblib.py | 8 +-
doc/examples/cookbook/cblib1.py | 3 +-
doc/examples/cookbook/cerjen.py | 18 +
doc/examples/cookbook/example01c.py | 6 +-
doc/examples/cookbook/example03a.py | 13 +-
doc/examples/cookbook/example03b.py | 2 +-
doc/examples/cookbook/example04a.py | 6 +-
doc/examples/cookbook/example04b.py | 13 +-
doc/examples/cookbook/example05a.py | 11 +-
doc/examples/cookbook/example05b.py | 9 +-
doc/examples/cookbook/example05c.py | 7 +-
doc/examples/cookbook/example06.py | 9 +-
doc/examples/cookbook/example08b.py | 14 +-
doc/examples/cookbook/example08c.py | 16 +-
doc/examples/cookbook/example09a.py | 16 +-
doc/examples/cookbook/example09b.py | 16 +-
doc/examples/cookbook/example09c.py | 16 +-
doc/examples/cookbook/example09m.py | 7 +-
doc/examples/cookbook/example09n.py | 3 +-
doc/examples/cookbook/example10a.py | 15 +-
doc/examples/cookbook/example10b.py | 3 +-
doc/examples/cookbook/example10c_0.py | 3 +-
doc/examples/cookbook/example10c_1.py | 3 +-
doc/examples/cookbook/example10d.py | 3 +-
doc/examples/cookbook/example10e.py | 3 +-
doc/examples/cookbook/example10m.py | 3 +-
doc/examples/cookbook/example10p.py | 3 +-
doc/examples/cookbook/example11a.py | 3 +-
doc/examples/cookbook/example11b.py | 3 +-
doc/examples/cookbook/example11c.py | 3 +-
doc/examples/cookbook/example11m.py | 6 +-
doc/examples/cookbook/wave_stab.py | 8 +-
doc/examples/cookbook/wavesolver2d001.py | 3 +-
doc/examples/cookbook/wavesolver2d002.py | 3 +-
doc/examples/cookbook/wavesolver2d003.py | 3 +-
doc/examples/cookbook/wavesolver2d004.py | 3 +-
doc/examples/geotutorial/backward_euler.py | 4 +-
doc/examples/geotutorial/forward_euler.py | 3 +-
doc/examples/inversion/create_netcdf.py | 5 +-
doc/examples/inversion/dc_forward.py | 19 +-
doc/examples/inversion/grav_ermapper.py | 3 +-
doc/examples/inversion/grav_netcdf.py | 3 +-
doc/examples/inversion/gravmag_netcdf.py | 3 +-
doc/examples/inversion/gravmag_nodriver.py | 3 +-
doc/examples/inversion/gravmag_wgs84_nodriver.py | 3 +-
doc/examples/inversion/mag_netcdf.py | 3 +-
doc/examples/inversion/mag_wgs84_netcdf.py | 3 +-
doc/examples/inversion/plot_ermapper.py | 5 +-
doc/examples/inversion/plot_netcdf.py | 5 +-
doc/examples/inversion/strong_gravmag_netcdf.py | 3 +-
doc/examples/inversion/synthetic_HTI.py | 227 +-
doc/examples/inversion/synthetic_TTI.py | 51 +-
doc/examples/inversion/synthetic_VTI.py | 50 +-
doc/examples/inversion/synthetic_sonic.py | 25 +-
doc/examples/inversion/synthetic_sonicHTI.py | 16 +-
doc/examples/inversion/test_commemi1.py | 450 ++++
doc/examples/inversion/test_commemi4.py | 553 +++++
doc/examples/usersguide/{poisson.py => dirac.py} | 33 +-
doc/examples/usersguide/fluid.py | 2 +-
doc/examples/usersguide/helmholtz.py | 3 +-
doc/examples/usersguide/int_save.py | 6 +-
doc/examples/usersguide/lame.py | 17 +
doc/examples/usersguide/poisson_matplotlib.py | 3 +-
doc/examples/usersguide/split.py | 26 +
doc/examples/usersguide/voxet_reader.py | 220 ++
doc/examples/usersguide/wave.py | 3 +-
doc/install/source.tex | 17 +-
doc/install/srcadditional.tex | 2 +-
doc/install/verinfo.tex | 8 +-
doc/inversion/CookGravity.tex | 2 +-
doc/inversion/defs.tex | 2 +-
doc/inversion/verinfo.tex | 8 +-
doc/sphinx_api/conf.py | 4 +-
doc/sphinx_api/genrst.py | 17 +-
doc/user/TutorialPDE.tex | 3 +-
doc/user/changes.tex | 17 +
doc/user/diffusion.tex | 6 +-
doc/user/dirac.tex | 84 +
doc/user/escript.tex | 1 +
doc/user/esys.bib | 572 ++---
doc/user/figures/EscriptDiagram1.pdf | Bin 9654 -> 8867 bytes
doc/user/figures/EscriptDiagram1.svg | 464 ++--
doc/user/figures/diracplot.png | Bin 0 -> 103515 bytes
doc/user/finley.tex | 25 +-
doc/user/firststep.tex | 2 +-
doc/user/linearPDE.tex | 22 +-
doc/user/ripley.tex | 49 +-
doc/user/speckley.tex | 2 +-
doc/user/subworlds.tex | 293 +++
doc/user/user.tex | 1 +
doc/user/user_defs.tex | 3 +-
doc/user/verinfo.tex | 8 +-
doc/verinfo.tex | 8 +-
downunder/py_src/__init__.py | 4 +-
downunder/py_src/coordinates.py | 2 +
downunder/py_src/costfunctions.py | 2 +
downunder/py_src/datasources.py | 10 +-
downunder/py_src/dcresistivityforwardmodeling.py | 3 +-
downunder/py_src/domainbuilder.py | 2 +
downunder/py_src/forwardmodels/__init__.py | 2 +
downunder/py_src/forwardmodels/acoustic.py | 3 +-
downunder/py_src/forwardmodels/base.py | 4 +-
downunder/py_src/forwardmodels/dcresistivity.py | 3 +-
downunder/py_src/forwardmodels/gravity.py | 3 +-
downunder/py_src/forwardmodels/magnetic.py | 3 +-
.../py_src/forwardmodels/magnetotelluric2d.py | 21 +-
downunder/py_src/forwardmodels/pressure.py | 5 +-
downunder/py_src/forwardmodels/subsidence.py | 3 +-
downunder/py_src/inversioncostfunctions.py | 2 +
downunder/py_src/inversions.py | 92 +-
downunder/py_src/magtel1d.py | 451 ++++
downunder/py_src/magtel2d.py | 1005 ++++++++
downunder/py_src/mappings.py | 3 +-
downunder/py_src/minimizers.py | 81 +-
downunder/py_src/regularizations.py | 2 +
downunder/py_src/seismic.py | 385 ++--
downunder/py_src/splitinversioncostfunctions.py | 382 +++-
downunder/py_src/splitminimizers.py | 406 +++-
downunder/py_src/splitregularizations.py | 73 +-
downunder/test/python/inversion_acoustictest_2d.py | 2 +
downunder/test/python/ref_data/dip.geo | 53 +
downunder/test/python/ref_data/pole.geo | 45 +
downunder/test/python/ref_data/schlum.geo | 53 +
downunder/test/python/run_comm1.py | 615 +++++
downunder/test/python/run_comm4.py | 692 ++++++
downunder/test/python/run_coordinates.py | 2 +
downunder/test/python/run_datasources.py | 3 +-
downunder/test/python/run_dcforward.py | 244 +-
downunder/test/python/run_domainbuilder.py | 3 +-
downunder/test/python/run_forward.py | 3 +-
downunder/test/python/run_gravity.py | 3 +-
downunder/test/python/run_inversion_gravmag_2d.py | 3 +-
downunder/test/python/run_inversioncostfunction.py | 3 +-
downunder/test/python/run_magnetic.py | 3 +-
downunder/test/python/run_mappings.py | 3 +-
downunder/test/python/run_minimizers.py | 8 +-
downunder/test/python/run_regularization.py | 3 +-
downunder/test/python/run_seismic.py | 3 +-
dudley/benchmarks/dudleybench.py | 3 +-
dudley/benchmarks/runbenchmark.py | 3 +-
dudley/py_src/__init__.py | 8 +-
dudley/py_src/factorywrappers.py | 3 +-
dudley/py_src/readers.py | 2 +
dudley/src/CPPAdapter/MeshAdapter.cpp | 5 +-
dudley/src/CPPAdapter/MeshAdapter.h | 9 +-
dudley/src/CPPAdapter/dudleycpp.cpp | 24 +-
dudley/src/generateReferenceElementList.py | 7 +-
dudley/test/python/FCT_benchmark.py | 2 +
dudley/test/python/FCT_test1.py | 4 +-
dudley/test/python/FCT_test2.py | 8 +-
dudley/test/python/OutTest.py | 2 +
dudley/test/python/PoissonSolverTest.py | 2 +
dudley/test/python/RT2D.py | 33 +-
dudley/test/python/RecTest.py | 2 +
dudley/test/python/axisymm-splitB.py | 14 +-
dudley/test/python/blocktest.py | 27 +-
dudley/test/python/brick.py | 2 +
dudley/test/python/convection.py | 3 +
dudley/test/python/fixme_run_generators.py | 2 +
dudley/test/python/generate_dumps.py | 2 +
dudley/test/python/generate_meshes.py | 2 +
dudley/test/python/linearElastic.py | 2 +
dudley/test/python/rayleigh_taylor_instabilty.py | 2 +
dudley/test/python/rectangle.py | 2 +
dudley/test/python/run_escriptOnDudley.py | 2 +
dudley/test/python/run_inputOutput.py | 2 +-
dudley/test/python/run_linearPDEsOnDudley1.py | 2 +
dudley/test/python/run_linearPDEsOnDudley2.py | 2 +
dudley/test/python/run_models.py | 367 +--
dudley/test/python/run_nlpde2dOnDudley.py | 2 +
dudley/test/python/run_nlpde3dOnDudley.py | 2 +
dudley/test/python/run_simplesolve.py | 2 +
.../test/python/run_splitworldOnDudley.py | 33 +-
dudley/test/python/run_utilOnDudley.py | 2 +
dudley/test/python/seismic_wave.py | 6 +-
dudley/test/python/slip_stress_mesh_old.py | 2 +
dudley/test/python/slip_stress_old.py | 2 +
dudley/test/python/stokes_problems.py | 2 +
dudley/test/python/subduction1.py | 2 +
dudley/test/python/subduction1_gen.py | 2 +
dudley/test/python/time_chunks.py | 2 +-
dudley/test/python/tp.py | 2 +
escript/py_src/__init__.py | 5 +
escript/py_src/datamanager.py | 16 +
escript/py_src/linearPDEs.py | 17 +-
escript/py_src/modelframe.py | 17 +-
escript/py_src/models.py | 17 +-
escript/py_src/pdetools.py | 19 +-
escript/py_src/symbolic.py | 16 +-
escript/py_src/unitsSI.py | 18 +-
escript/py_src/util.py | 17 +-
escriptcore/py_src/__init__.py | 2 +
escriptcore/py_src/benchmark.py | 2 +
escriptcore/py_src/datamanager.py | 8 +-
escriptcore/py_src/domainCouplers.py | 2 +
escriptcore/py_src/faultsystems.py | 2 +
escriptcore/py_src/flows.py | 2 +
escriptcore/py_src/gmshrunner.py | 2 +
escriptcore/py_src/heat.py | 2 +
escriptcore/py_src/levelset.py | 2 +
escriptcore/py_src/linearPDEs.py | 92 +-
escriptcore/py_src/modelframe.py | 21 +-
escriptcore/py_src/models.py | 2 +
escriptcore/py_src/mountains.py | 2 +
escriptcore/py_src/nonlinearPDE.py | 10 +-
escriptcore/py_src/pdetools.py | 6 +-
escriptcore/py_src/rheologies.py | 2 +
escriptcore/py_src/runmodel.py | 2 +
escriptcore/py_src/splitworld.py | 173 +-
escriptcore/py_src/start.py | 2 +
escriptcore/py_src/symbolic/__init__.py | 2 +
escriptcore/py_src/symbolic/evaluator.py | 4 +-
escriptcore/py_src/symbolic/functions.py | 2 +
escriptcore/py_src/symbolic/pretty.py | 2 +
escriptcore/py_src/symbolic/symbol.py | 2 +
escriptcore/py_src/symbolic/symconstants.py | 18 +
escriptcore/py_src/symbolic/utils.py | 2 +
escriptcore/py_src/testing.py | 2 +
escriptcore/py_src/unitsSI.py | 2 +
escriptcore/py_src/utestselect.py | 2 +
escriptcore/py_src/util.py | 10 +-
escriptcore/src/AbstractReducer.cpp | 10 +
escriptcore/src/AbstractReducer.h | 20 +-
escriptcore/src/Data.cpp | 34 +-
escriptcore/src/Data.h | 17 +-
escriptcore/src/DataAbstract.cpp | 4 +
escriptcore/src/DataAbstract.h | 19 +-
escriptcore/src/DataExpanded.h | 18 +-
escriptcore/src/LocalOps.h | 24 +-
escriptcore/src/MPIDataReducer.cpp | 212 +-
escriptcore/src/MPIDataReducer.h | 12 +-
escriptcore/src/MPIScalarReducer.cpp | 79 +-
escriptcore/src/MPIScalarReducer.h | 12 +-
escriptcore/src/NonReducedVariable.cpp | 16 +-
escriptcore/src/NonReducedVariable.h | 6 +-
escriptcore/src/SolverOptions.cpp | 14 +-
escriptcore/src/SplitWorld.cpp | 40 +-
escriptcore/src/SplitWorld.h | 4 +
escriptcore/src/SubWorld.cpp | 292 ++-
escriptcore/src/SubWorld.h | 23 +-
escriptcore/src/escriptcpp.cpp | 27 +-
escriptcore/test/DataTaggedTestCase.cpp | 13 +
escriptcore/test/DataTestCase.cpp | 3 +
escriptcore/test/python/run_data_access.py | 2 +
escriptcore/test/python/run_symbolic.py | 2 +
escriptcore/test/python/run_testdomain.py | 2 +
escriptcore/test/python/run_units.py | 2 +
escriptcore/test/python/run_xml.py | 2 +
escriptcore/test/python/test_assemblage.py | 2 +
escriptcore/test/python/test_assemblage_2Do1.py | 2 +
escriptcore/test/python/test_assemblage_2Do2.py | 2 +
escriptcore/test/python/test_assemblage_3Do1.py | 2 +
escriptcore/test/python/test_assemblage_3Do2.py | 2 +
escriptcore/test/python/test_condEval.py | 2 +
escriptcore/test/python/test_linearPDEs.py | 100 +-
escriptcore/test/python/test_modulefns.py | 2 +
escriptcore/test/python/test_nonLinearPDE.py | 2 +
escriptcore/test/python/test_objects.py | 2 +
escriptcore/test/python/test_pdetools.py | 2 +
escriptcore/test/python/test_shared.py | 4 +-
escriptcore/test/python/test_splitworld.py | 590 ++++-
escriptcore/test/python/test_symfuncs.py | 2 +
escriptcore/test/python/test_util.py | 2 +
escriptcore/test/python/test_util_NaN_funcs.py | 20 +-
escriptcore/test/python/test_util_base.py | 2 +
.../test/python/test_util_binary_no_tagged_data.py | 2 +
.../python/test_util_binary_with_tagged_data.py | 2 +
.../test_util_overloaded_binary_no_tagged_data.py | 2 +
...test_util_overloaded_binary_with_tagged_data.py | 2 +
.../python/test_util_reduction_no_tagged_data.py | 2 +
.../python/test_util_reduction_with_tagged_data.py | 4 +-
.../python/test_util_slicing_no_tagged_data.py | 2 +
.../python/test_util_slicing_with_tagged_data.py | 2 +
.../test/python/test_util_spatial_functions1.py | 2 +
.../test/python/test_util_spatial_functions2.py | 2 +
.../test/python/test_util_spatial_functions3.py | 2 +
.../test/python/test_util_unary_no_tagged_data.py | 2 +
.../python/test_util_unary_with_tagged_data.py | 2 +
esysUtils/src/Esys_MPI.cpp | 10 +-
esysUtils/src/Esys_MPI.h | 8 +-
esysUtils/src/pyerr.cpp | 37 +-
esysUtils/src/pyerr.h | 3 +-
finley/benchmarks/finleybench.py | 3 +-
finley/benchmarks/runbenchmark.py | 3 +-
finley/py_src/__init__.py | 6 +-
finley/py_src/factorywrappers.py | 10 +-
finley/py_src/readers.py | 2 +
finley/src/Assemble.h | 58 +-
finley/src/Assemble_CopyNodalData.cpp | 72 +-
finley/src/Assemble_LumpedSystem.cpp | 12 +-
finley/src/Assemble_PDE_Points.cpp | 4 +-
finley/src/Assemble_PDE_Single_1D.cpp | 4 +-
finley/src/Assemble_PDE_Single_2D.cpp | 4 +-
finley/src/Assemble_PDE_Single_3D.cpp | 4 +-
finley/src/Assemble_PDE_Single_C.cpp | 4 +-
finley/src/Assemble_PDE_System_1D.cpp | 4 +-
finley/src/Assemble_PDE_System_2D.cpp | 4 +-
finley/src/Assemble_PDE_System_3D.cpp | 4 +-
finley/src/Assemble_PDE_System_C.cpp | 4 +-
finley/src/Assemble_addToSystemMatrix.cpp | 137 +-
finley/src/Assemble_getNormal.cpp | 2 +-
finley/src/Assemble_gradient.cpp | 54 +-
finley/src/Assemble_interpolate.cpp | 10 +-
finley/src/Assemble_jacobians.cpp | 74 +-
finley/src/CPPAdapter/MeshAdapter.cpp | 170 +-
finley/src/CPPAdapter/MeshAdapter.h | 123 +-
finley/src/CPPAdapter/MeshAdapterFactory.cpp | 925 ++++----
finley/src/CPPAdapter/MeshAdapterFactory.h | 305 ++-
finley/src/CPPAdapter/finleycpp.cpp | 21 +-
finley/src/ElementFile.cpp | 78 +-
finley/src/ElementFile.h | 24 +-
finley/src/IndexList.cpp | 24 +-
finley/src/IndexList.h | 8 +-
finley/src/Mesh.cpp | 174 +-
finley/src/Mesh.h | 38 +-
finley/src/Mesh_getPattern.cpp | 2 +-
finley/src/Mesh_glueFaces.cpp | 20 +-
finley/src/Mesh_hex20.cpp | 1112 ++++-----
finley/src/Mesh_hex8.cpp | 683 +++---
finley/src/Mesh_optimizeDOFDistribution.cpp | 42 +-
finley/src/Mesh_read.cpp | 12 +-
finley/src/Mesh_readGmsh.cpp | 2 +-
finley/src/Mesh_rec4.cpp | 422 ++--
finley/src/Mesh_rec8.cpp | 547 +++--
finley/src/Mesh_write.cpp | 428 ++--
finley/src/NodeFile.cpp | 440 ++--
finley/src/NodeFile.h | 136 +-
finley/src/NodeMapping.h | 18 +-
finley/src/RectangularMesh.h | 25 +-
finley/src/Util.cpp | 63 +-
finley/src/Util.h | 16 +-
finley/src/generateReferenceElementList.py | 2 +
finley/test/python/FCT_benchmark.py | 2 +
finley/test/python/FCT_test0.py | 5 +-
finley/test/python/FCT_test1.py | 5 +-
finley/test/python/FCT_test2.py | 6 +-
finley/test/python/OutTest.py | 2 +
finley/test/python/PoissonSolverTest.py | 2 +
finley/test/python/RT2D.py | 26 +-
finley/test/python/RecTest.py | 2 +
finley/test/python/axisymm-splitB.py | 14 +-
finley/test/python/blocktest.py | 2 +
finley/test/python/brick.py | 2 +
finley/test/python/coalgas.py | 3 +
finley/test/python/convection.py | 3 +
finley/test/python/damage.py | 15 +-
finley/test/python/generate_dumps.py | 2 +
finley/test/python/generate_meshes.py | 2 +
finley/test/python/linearElastic.py | 2 +
finley/test/python/localization.py | 3 +
finley/test/python/lumping_advection_test.py | 12 +-
finley/test/python/lumping_wave_test.py | 11 +-
finley/test/python/rayleigh_taylor_instabilty.py | 2 +
finley/test/python/rectangle.py | 2 +
finley/test/python/run_amg.py | 2 +
finley/test/python/run_darcy.py | 2 +
finley/test/python/run_escriptOnFinley.py | 10 +-
finley/test/python/run_generators.py | 2 +
finley/test/python/run_inputOutput.py | 2 +-
finley/test/python/run_linearPDEsOnFinley1_2D1.py | 2 +
finley/test/python/run_linearPDEsOnFinley1_2D2.py | 2 +
finley/test/python/run_linearPDEsOnFinley1_3D1.py | 2 +
.../python/run_linearPDEsOnFinley1_3D2_part1.py | 21 +-
.../python/run_linearPDEsOnFinley1_3D2_part2.py | 22 +-
.../python/run_linearPDEsOnFinley1_3D2_part3-1.py | 18 +-
.../python/run_linearPDEsOnFinley1_3D2_part3-2.py | 18 +-
.../python/run_linearPDEsOnFinley1_3D2_part3-3.py | 19 +-
.../python/run_linearPDEsOnFinley1_3D2_part3-4.py | 18 +-
.../python/run_linearPDEsOnFinley1_3D2_part4.py | 20 +-
finley/test/python/run_linearPDEsOnFinley2.py | 2 +
finley/test/python/run_linearPDEsOnFinley3.py | 2 +
finley/test/python/run_linearPDEsOnFinleyMacro.py | 2 +
finley/test/python/run_models.py | 13 +-
finley/test/python/run_nlpde2dOnFinley.py | 2 +
finley/test/python/run_nlpde3dOnFinley.py | 2 +
finley/test/python/run_simplesolve.py | 2 +
finley/test/python/run_splitworldOnFinley.py | 28 +-
finley/test/python/run_utilOnFinley.py | 123 +-
finley/test/python/run_visualization_interface.py | 2 +
finley/test/python/runcoalgas.py | 3 +
finley/test/python/seismic_wave.py | 7 +-
finley/test/python/slip_stress_mesh_old.py | 2 +
finley/test/python/slip_stress_old.py | 2 +
finley/test/python/stokes_problems.py | 2 +
finley/test/python/subduction1.py | 2 +
finley/test/python/subduction1_gen.py | 2 +
finley/test/python/time_chunks.py | 2 +-
finley/test/python/tp.py | 2 +
modellib/py_src/__init__.py | 18 +
modellib/py_src/flow.py | 2 +
modellib/py_src/geometry.py | 4 +-
modellib/py_src/input.py | 2 +
modellib/py_src/materials.py | 2 +
modellib/py_src/mechanics.py | 2 +
modellib/py_src/probe.py | 2 +
modellib/py_src/temperature.py | 2 +
modellib/py_src/visualization.py | 2 +
modellib/test/python/drucker_prager.py | 2 +
modellib/test/python/run_convection.py | 4 +-
modellib/test/python/run_domainreaders.py | 3 +-
modellib/test/python/run_flow.py | 7 +-
modellib/test/python/run_temp.py | 2 +
paso/src/Options.cpp | 6 +
paso/src/ReactiveSolver.cpp | 2 +-
pasowrap/py_src/__init__.py | 2 +
pasowrap/py_src/pasowrap.py | 4 +-
pasowrap/src/SystemMatrixAdapter.cpp | 2 +
pasowrap/src/TransportProblemAdapter.cpp | 1 +
pycad/py_src/Triangle.py | 10 +-
pycad/py_src/__init__.py | 2 +
pycad/py_src/design.py | 18 +-
pycad/py_src/extras.py | 2 +
pycad/py_src/gmsh.py | 2 +
pycad/py_src/primitives.py | 2 +
pycad/py_src/shapes.py | 2 +
pycad/py_src/transformations.py | 2 +
pycad/test/python/run_pycad_test.py | 2 +
ripley/generators/lamebuilder.py | 18 +-
ripley/generators/lamesource.py | 18 +
ripley/py_src/__init__.py | 6 +-
ripley/src/Brick.cpp | 10 +-
ripley/src/MultiBrick.cpp | 11 +-
ripley/src/MultiRectangle.cpp | 12 +-
ripley/src/Rectangle.cpp | 10 +-
ripley/src/generate_assamblage.py | 19 +
ripley/src/generate_assemblage_cpp.py | 2 +
.../test/python/run_customAssemblersOnMultiRes.py | 2 +-
ripley/test/python/run_escriptOnMultiResolution.py | 2 +
ripley/test/python/run_escriptOnRipley.py | 2 +
ripley/test/python/run_linearPDEsOnMultiRes.py | 2 +
ripley/test/python/run_linearPDEsOnRipley.py | 2 +
ripley/test/python/run_nonlinearPDEOnMultiRes.py | 2 +
ripley/test/python/run_nonlinearPDEOnRipley.py | 2 +
ripley/test/python/run_readWriteOnMultiRes.py | 2 +
ripley/test/python/run_readWriteOnRipley.py | 2 +
ripley/test/python/run_simplesolveOnMultiRes.py | 2 +
ripley/test/python/run_simplesolveOnRipley.py | 2 +
ripley/test/python/run_splitworldOnRipley.py | 98 +
ripley/test/python/run_utilOnMultiRes.py | 12 +-
ripley/test/python/run_utilOnRipley.py | 2 +
run-escript.in | 4 +-
scons/badger_options.py | 4 +-
...{porcupine_options.py => badger_py3_options.py} | 6 +-
scons/guineapig_py3_options.py | 3 +
scons/sage_options.py | 221 +-
scons/sage_py3_options.py | 229 +-
scons/squirrel_options.py | 3 +-
scons/templates/__init__.py | 16 +
scons/templates/freebsd10_0_options.py | 6 +-
scons/templates/homebrew_10.10_options.py | 1 +
...{jessie_mpi_options.py => vivid_mpi_options.py} | 2 +-
.../{utopic_options.py => vivid_options.py} | 2 +-
...py3_mpi_options.py => vivid_py3_mpi_options.py} | 2 +-
...{jessie_py3_options.py => vivid_py3_options.py} | 2 +-
scripts/makesrc.sh | 17 +
scripts/py27+3_64.valgrind | 222 ++
scripts/py_comp.py | 17 +-
site_scons/dependencies.py | 47 +-
site_scons/extractdebbuild.py | 4 +-
site_scons/grouptest.py | 2 +
site_scons/site_init.py | 16 +-
site_scons/site_tools/nvcc.py | 18 +
speckley/py_src/__init__.py | 4 +-
speckley/src/Brick.cpp | 6 +-
speckley/src/Rectangle.cpp | 6 +-
speckley/src/SpeckleyDomain.cpp | 1 +
speckley/test/python/run_SpeckleyRipleyCoupler.py | 4 +-
speckley/test/python/run_readWriteOnSpeckley.py | 2 +
speckley/test/python/run_specialOnSpeckley.py | 3 +-
svn_version | 1 +
tools/testrunner.py | 19 +-
weipa/py_src/__init__.py | 10 +-
weipa/src/FinleyElements.cpp | 15 +-
weipa/src/FinleyNodes.cpp | 28 +-
weipa/src/RipleyNodes.cpp | 3 +-
weipa/src/SpeckleyNodes.cpp | 3 +-
weipa/test/python/run_savesilo_tests.py | 11 +
weipa/test/python/run_savevtk_tests.py | 2 +
520 files changed, 15325 insertions(+), 7347 deletions(-)
create mode 100644 debian/patches/dateless-gz
create mode 100644 debian/patches/doxygenfix
create mode 100644 debian/patches/grammar-errors
create mode 100644 debian/patches/mpi-gaol
create mode 100644 debian/patches/release-sanity
create mode 100644 debian/patches/relocating-debian-dir
delete mode 100644 debian/python-escript-doc.dirs
create mode 100644 debian/python-escript-doc.doc-base.1
create mode 100644 debian/python-escript-doc.doc-base.2
create mode 100644 debian/python-escript-doc.doc-base.3
create mode 100644 debian/python-escript-doc.doc-base.4
create mode 100644 debian/python-escript-doc.doc-base.5
create mode 100644 debian/python-escript-doc.doc-base.6
delete mode 100644 debian/python-escript-mpi.dirs
delete mode 100644 debian/python-escript.dirs
delete mode 100644 debian/python3-escript-mpi.dirs
delete mode 100644 debian/python3-escript.dirs
copy debian/utils/subst/{utopic.subst => vivid.subst} (100%)
create mode 100644 debian/watch
mode change 100644 => 120000 doc/cookbook/verinfo.tex
create mode 100644 doc/examples/inversion/test_commemi1.py
create mode 100644 doc/examples/inversion/test_commemi4.py
copy doc/examples/usersguide/{poisson.py => dirac.py} (61%)
create mode 100644 doc/examples/usersguide/split.py
create mode 100644 doc/examples/usersguide/voxet_reader.py
mode change 100644 => 120000 doc/install/verinfo.tex
mode change 100644 => 120000 doc/inversion/verinfo.tex
create mode 100644 doc/user/dirac.tex
create mode 100644 doc/user/figures/diracplot.png
create mode 100644 doc/user/subworlds.tex
mode change 100644 => 120000 doc/user/verinfo.tex
create mode 100644 downunder/py_src/magtel1d.py
create mode 100644 downunder/py_src/magtel2d.py
create mode 100644 downunder/test/python/ref_data/dip.geo
create mode 100644 downunder/test/python/ref_data/pole.geo
create mode 100644 downunder/test/python/ref_data/schlum.geo
create mode 100644 downunder/test/python/run_comm1.py
create mode 100644 downunder/test/python/run_comm4.py
copy finley/test/python/run_splitworldOnFinley.py => dudley/test/python/run_splitworldOnDudley.py (62%)
create mode 100644 ripley/test/python/run_splitworldOnRipley.py
copy scons/{porcupine_options.py => badger_py3_options.py} (88%)
copy scons/templates/{jessie_mpi_options.py => vivid_mpi_options.py} (95%)
copy scons/templates/{utopic_options.py => vivid_options.py} (99%)
copy scons/templates/{jessie_py3_mpi_options.py => vivid_py3_mpi_options.py} (96%)
copy scons/templates/{jessie_py3_options.py => vivid_py3_options.py} (96%)
create mode 100755 scripts/makesrc.sh
create mode 100644 scripts/py27+3_64.valgrind
create mode 100644 svn_version
--
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