[shark] 17/24: Add patch queue.
Ghislain Vaillant
ghisvail-guest at moszumanska.debian.org
Thu Dec 10 19:50:05 UTC 2015
This is an automated email from the git hooks/post-receive script.
ghisvail-guest pushed a commit to branch debian/sid
in repository shark.
commit bca8ff07fd1879878cf8ea638e5965114fda8cfd
Author: Ghislain Antony Vaillant <ghisvail at gmail.com>
Date: Mon Nov 23 18:20:20 2015 +0000
Add patch queue.
---
debian/patches/Disable-HTML-timestamps.patch | 21 +++++++++
.../patches/Disable-doxygen-generate-tagfile.patch | 21 +++++++++
debian/patches/Disable-doxylink.patch | 30 ++++++++++++
.../Disable-privacy-breaching-content.patch | 39 +++++++++++++++
debian/patches/Fix-CMake-package-creation.patch | 48 +++++++++++++++++++
.../patches/Fix-documentation-install-target.patch | 39 +++++++++++++++
debian/patches/Fix-examples-install-target.patch | 25 ++++++++++
debian/patches/Fix-library-install-target.patch | 21 +++++++++
debian/patches/Use-GNUInstallDirs.patch | 55 ++++++++++++++++++++++
debian/patches/Use-system-MathJax.patch | 54 +++++++++++++++++++++
debian/patches/series | 10 ++++
11 files changed, 363 insertions(+)
diff --git a/debian/patches/Disable-HTML-timestamps.patch b/debian/patches/Disable-HTML-timestamps.patch
new file mode 100644
index 0000000..68cf4a1
--- /dev/null
+++ b/debian/patches/Disable-HTML-timestamps.patch
@@ -0,0 +1,21 @@
+From: Ghislain Antony Vaillant <ghisvail at gmail.com>
+Date: Mon, 23 Nov 2015 23:11:15 +0000
+Subject: Disable HTML timestamps.
+
+---
+ doc/Shark.dox.in | 2 +-
+ 1 file changed, 1 insertion(+), 1 deletion(-)
+
+diff --git a/doc/Shark.dox.in b/doc/Shark.dox.in
+index d754567..0657ed0 100644
+--- a/doc/Shark.dox.in
++++ b/doc/Shark.dox.in
+@@ -951,7 +951,7 @@ HTML_COLORSTYLE_GAMMA = 80
+ # page will contain the date and time when the page was generated. Setting
+ # this to NO can help when comparing the output of multiple runs.
+
+-HTML_TIMESTAMP = YES
++HTML_TIMESTAMP = NO
+
+ # If the HTML_DYNAMIC_SECTIONS tag is set to YES then the generated HTML
+ # documentation will contain sections that can be hidden and shown after the
diff --git a/debian/patches/Disable-doxygen-generate-tagfile.patch b/debian/patches/Disable-doxygen-generate-tagfile.patch
new file mode 100644
index 0000000..fc92b64
--- /dev/null
+++ b/debian/patches/Disable-doxygen-generate-tagfile.patch
@@ -0,0 +1,21 @@
+From: Ghislain Antony Vaillant <ghisvail at gmail.com>
+Date: Thu, 10 Dec 2015 09:56:09 +0000
+Subject: Disable doxygen generate tagfile.
+
+---
+ doc/Shark.dox.in | 2 +-
+ 1 file changed, 1 insertion(+), 1 deletion(-)
+
+diff --git a/doc/Shark.dox.in b/doc/Shark.dox.in
+index 0657ed0..52b66cc 100644
+--- a/doc/Shark.dox.in
++++ b/doc/Shark.dox.in
+@@ -1561,7 +1561,7 @@ TAGFILES =
+ # When a file name is specified after GENERATE_TAGFILE, doxygen will create
+ # a tag file that is based on the input files it reads.
+
+-GENERATE_TAGFILE = @CMAKE_CURRENT_SOURCE_DIR@/doxygen_pages/tag_files/all.tag
++GENERATE_TAGFILE =
+
+ # If the ALLEXTERNALS tag is set to YES all external classes will be listed
+ # in the class index. If set to NO only the inherited external classes
diff --git a/debian/patches/Disable-doxylink.patch b/debian/patches/Disable-doxylink.patch
new file mode 100644
index 0000000..d22361e
--- /dev/null
+++ b/debian/patches/Disable-doxylink.patch
@@ -0,0 +1,30 @@
+From: Ghislain Antony Vaillant <ghisvail at gmail.com>
+Date: Mon, 23 Nov 2015 23:14:18 +0000
+Subject: Disable doxylink.
+
+---
+ doc/sphinx_pages/conf.py.in | 7 +------
+ 1 file changed, 1 insertion(+), 6 deletions(-)
+
+diff --git a/doc/sphinx_pages/conf.py.in b/doc/sphinx_pages/conf.py.in
+index f5c0721..dcbfc99 100644
+--- a/doc/sphinx_pages/conf.py.in
++++ b/doc/sphinx_pages/conf.py.in
+@@ -8,16 +8,11 @@ import sys, os, glob
+
+ # Add any Sphinx extension module names here, as strings. They can be extensions
+ # coming with Sphinx (named 'sphinx.ext.*') or your custom ones.
+-extensions = ['sphinx.ext.mathjax', 'sphinx.ext.todo', 'sphinxcontrib.doxylink'] #using mathjax
++extensions = ['sphinx.ext.mathjax', 'sphinx.ext.todo'] #using mathjax
+ mathjax_path = 'MathJax.js'
+
+ todo_include_todos = True
+
+-#set up doxylink tag file
+-print 'current working directory', os.path.abspath(os.path.curdir)
+-doxylink = {
+- 'doxy' : (os.path.abspath('@CMAKE_CURRENT_SOURCE_DIR@/doxygen_pages/tag_files/all.tag'), '../../../doxygen_pages/html/')
+-}
+
+
+
diff --git a/debian/patches/Disable-privacy-breaching-content.patch b/debian/patches/Disable-privacy-breaching-content.patch
new file mode 100644
index 0000000..2555359
--- /dev/null
+++ b/debian/patches/Disable-privacy-breaching-content.patch
@@ -0,0 +1,39 @@
+From: Ghislain Antony Vaillant <ghisvail at gmail.com>
+Date: Thu, 10 Dec 2015 18:51:58 +0000
+Subject: Disable privacy breaching content.
+
+---
+ doc/index.html | 20 --------------------
+ 1 file changed, 20 deletions(-)
+
+diff --git a/doc/index.html b/doc/index.html
+index daaf27f..87b2626 100644
+--- a/doc/index.html
++++ b/doc/index.html
+@@ -150,26 +150,6 @@ Get the current Shark repository snapshot:
+ git clone https://github.com/Shark-ML/Shark/
+ </div>
+ </p>
+-<p>
+-<table class="status">
+-<tr>
+-<th>OS</th>
+-<th>coverage</th>
+-<th>status</th>
+-<th>service</th>
+-</tr>
+-<tr>
+-<td>Linux and Mac OS</td><td>library and unit tests</td>
+-<td><img src="https://travis-ci.org/Shark-ML/Shark.svg?branch=master" alt="build results Linux and Mac OS"></td>
+-<td><a href="https://travis-ci.org/Shark-ML">travis-ci</a></td>
+-</tr>
+-<tr>
+-<td>Windows</td><td>library only, no unit tests</td>
+-<td><img src="https://ci.appveyor.com/api/projects/status/github/shark-ml/shark?branch=master&svg=true" alt="build results Windows"></td>
+-<td><a href="http://www.appveyor.com/">appveyor</a></td>
+-</tr>
+-</table>
+-</p>
+ </div></div>
+
+ <!-- where to start? -->
diff --git a/debian/patches/Fix-CMake-package-creation.patch b/debian/patches/Fix-CMake-package-creation.patch
new file mode 100644
index 0000000..fd37131
--- /dev/null
+++ b/debian/patches/Fix-CMake-package-creation.patch
@@ -0,0 +1,48 @@
+From: Ghislain Antony Vaillant <ghisvail at gmail.com>
+Date: Tue, 24 Nov 2015 19:46:29 +0000
+Subject: Fix CMake package creation.
+
+---
+ CMakeLists.txt | 22 +++++-----------------
+ 1 file changed, 5 insertions(+), 17 deletions(-)
+
+diff --git a/CMakeLists.txt b/CMakeLists.txt
+index 3351088..83ebecd 100644
+--- a/CMakeLists.txt
++++ b/CMakeLists.txt
+@@ -411,7 +411,7 @@ endif()
+ ###################################################################
+ # CPACK PACKAGING
+ ###################################################################
+-set(INSTALL_CMAKE_DIR lib/cmake/Shark/)
++set(INSTALL_CMAKE_DIR ${SHARK_INSTALL_LIB_DIR}/cmake/Shark)
+
+ # Add all targets to the build-tree export set
+ export(TARGETS shark SharkVersion FILE "${shark_BINARY_DIR}/SharkTargets.cmake")
+@@ -427,22 +427,10 @@ set(SHARK_INCLUDE_DIRS "${PROJECT_SOURCE_DIR}/include" "${PROJECT_BINARY_DIR}/in
+ configure_file(SharkConfig.cmake.in "${PROJECT_BINARY_DIR}/SharkConfig.cmake")
+ configure_file(SharkConfigVersion.cmake.in "${PROJECT_BINARY_DIR}/SharkConfigVersion.cmake")
+
+-# Configure the SharkConfig.cmake for the install tree
+-set(SHARK_CONFIG_CODE "
+- # Compute the installation prefix from this SharkConfig.cmake file location.
+- get_filename_component(SHARK_INSTALL_PREFIX \"\${CMAKE_CURRENT_LIST_FILE}\" PATH)")
+-
+-# Construct the proper number of get_filename_component(... PATH)
+-# calls to compute the installation prefix.
+-string(REGEX REPLACE "/" ";" _count "${INSTALL_CMAKE_DIR}")
+-foreach(p ${_count})
+- set(SHARK_CONFIG_CODE "${SHARK_CONFIG_CODE}
+- get_filename_component(SHARK_INSTALL_PREFIX \"\${SHARK_INSTALL_PREFIX}\" DIRECTORY)")
+-endforeach()
+-set(SHARK_CONFIG_CODE "${SHARK_CONFIG_CODE}")
+-
+-set(SHARK_USE_FILE "\${SHARK_INSTALL_PREFIX}/${INSTALL_CMAKE_DIR}UseShark.cmake")
+-set(SHARK_TARGETS_FILE "\${SHARK_INSTALL_PREFIX}/${INSTALL_CMAKE_DIR}SharkTargets.cmake")
++set(SHARK_CONFIG_CODE "set(SHARK_INSTALL_PREFIX ${CMAKE_INSTALL_PREFIX})")
++
++set(SHARK_USE_FILE "\${SHARK_INSTALL_PREFIX}/${INSTALL_CMAKE_DIR}/UseShark.cmake")
++set(SHARK_TARGETS_FILE "\${SHARK_INSTALL_PREFIX}/${INSTALL_CMAKE_DIR}/SharkTargets.cmake")
+ set(SHARK_LIBRARIES ${LINK_LIBRARIES} shark)
+ set(SHARK_LIBRARY_DIRS "\${SHARK_INSTALL_PREFIX}/lib")
+ set(SHARK_INCLUDE_DIRS "\${SHARK_INSTALL_PREFIX}/${SHARK_INSTALL_INCLUDE_DIR}" "${Boost_INCLUDE_DIR}" ${EXTRA_INCLUDE_DIRECTORIES})
diff --git a/debian/patches/Fix-documentation-install-target.patch b/debian/patches/Fix-documentation-install-target.patch
new file mode 100644
index 0000000..95dcaec
--- /dev/null
+++ b/debian/patches/Fix-documentation-install-target.patch
@@ -0,0 +1,39 @@
+From: Ghislain Antony Vaillant <ghisvail at gmail.com>
+Date: Tue, 24 Nov 2015 09:25:04 +0000
+Subject: Fix documentation install target.
+
+---
+ doc/CMakeLists.txt | 10 +++++-----
+ 1 file changed, 5 insertions(+), 5 deletions(-)
+
+diff --git a/doc/CMakeLists.txt b/doc/CMakeLists.txt
+index 95ef9e4..66feb3c 100644
+--- a/doc/CMakeLists.txt
++++ b/doc/CMakeLists.txt
+@@ -49,21 +49,21 @@ OPTION( OPT_INSTALL_DOCUMENTATION "Install documentation." OFF )
+ IF( OPT_INSTALL_DOCUMENTATION )
+
+ INSTALL( FILES index.html
+- DESTINATION ${SHARK_INSTALL_DOC_DIR}
++ DESTINATION ${SHARK_INSTALL_DOC_DIR}/html
+ )
+
+ INSTALL( DIRECTORY ${CMAKE_CURRENT_BINARY_DIR}/doxygen_pages
+- DESTINATION ${SHARK_INSTALL_DOC_DIR}
++ DESTINATION ${SHARK_INSTALL_DOC_DIR}/html
+ PATTERN ".*" EXCLUDE
+ )
+
+ INSTALL( DIRECTORY ${CMAKE_CURRENT_SOURCE_DIR}/doxygen_pages/css
+- DESTINATION ${SHARK_INSTALL_DOC_DIR}/doxygen_pages
++ DESTINATION ${SHARK_INSTALL_DOC_DIR}/html/doxygen_pages
+ PATTERN ".*" EXCLUDE
+ )
+
+-INSTALL( DIRECTORY ${CMAKE_CURRENT_SOURCE_DIR}/sphinx_pages
+- DESTINATION ${SHARK_INSTALL_DOC_DIR}
++INSTALL( DIRECTORY ${CMAKE_CURRENT_BINARY_DIR}/sphinx_pages/build/html/
++ DESTINATION ${SHARK_INSTALL_DOC_DIR}/html/sphinx_pages
+ PATTERN ".*" EXCLUDE
+ )
+
diff --git a/debian/patches/Fix-examples-install-target.patch b/debian/patches/Fix-examples-install-target.patch
new file mode 100644
index 0000000..d97d0fe
--- /dev/null
+++ b/debian/patches/Fix-examples-install-target.patch
@@ -0,0 +1,25 @@
+From: Ghislain Antony Vaillant <ghisvail at gmail.com>
+Date: Tue, 24 Nov 2015 09:49:43 +0000
+Subject: Fix examples install target.
+
+---
+ examples/CMakeLists.txt | 6 +++---
+ 1 file changed, 3 insertions(+), 3 deletions(-)
+
+diff --git a/examples/CMakeLists.txt b/examples/CMakeLists.txt
+index 413bdcd..e04843e 100755
+--- a/examples/CMakeLists.txt
++++ b/examples/CMakeLists.txt
+@@ -33,9 +33,9 @@ macro( SHARK_ADD_EXAMPLE TUT_SRC NAME COMPONENT )
+ set_target_properties( ${NAME} PROPERTIES FOLDER "examples")
+
+ # Installation
+- install(TARGETS ${NAME}
+- RUNTIME DESTINATION ${SHARK_INSTALL_EXAMPLE_DIR}/${COMPONENT}/
+- COMPONENT EXAMPLES)
++# install(TARGETS ${NAME}
++# RUNTIME DESTINATION ${SHARK_INSTALL_EXAMPLE_DIR}/${COMPONENT}/
++# COMPONENT EXAMPLES)
+
+ install(FILES ${EXAMPLES_CPP_DIR}/${TUT_SRC}.cpp
+ DESTINATION ${SHARK_INSTALL_EXAMPLE_DIR}/${COMPONENT})
diff --git a/debian/patches/Fix-library-install-target.patch b/debian/patches/Fix-library-install-target.patch
new file mode 100644
index 0000000..cfd34a7
--- /dev/null
+++ b/debian/patches/Fix-library-install-target.patch
@@ -0,0 +1,21 @@
+From: Ghislain Antony Vaillant <ghisvail at gmail.com>
+Date: Tue, 24 Nov 2015 19:48:51 +0000
+Subject: Fix library install target.
+
+---
+ src/CMakeLists.txt | 2 +-
+ 1 file changed, 1 insertion(+), 1 deletion(-)
+
+diff --git a/src/CMakeLists.txt b/src/CMakeLists.txt
+index 701daf1..4a4dfa8 100644
+--- a/src/CMakeLists.txt
++++ b/src/CMakeLists.txt
+@@ -54,7 +54,7 @@ install(TARGETS shark
+ ARCHIVE DESTINATION ${SHARK_INSTALL_LIB_DIR})
+
+ install(TARGETS SharkVersion
+- EXPORT SharkTargets
++ EXPORT SharkVersionTargets
+ RUNTIME DESTINATION ${SHARK_INSTALL_BIN_DIR})
+
+
diff --git a/debian/patches/Use-GNUInstallDirs.patch b/debian/patches/Use-GNUInstallDirs.patch
new file mode 100644
index 0000000..5b6ce91
--- /dev/null
+++ b/debian/patches/Use-GNUInstallDirs.patch
@@ -0,0 +1,55 @@
+From: Ghislain Antony Vaillant <ghisvail at gmail.com>
+Date: Mon, 23 Nov 2015 18:11:24 +0000
+Subject: Use GNUInstallDirs.
+
+---
+ CMakeLists.txt | 13 ++++++++-----
+ src/CMakeLists.txt | 8 ++++----
+ 2 files changed, 12 insertions(+), 9 deletions(-)
+
+diff --git a/CMakeLists.txt b/CMakeLists.txt
+index 5e5c5cd..3351088 100644
+--- a/CMakeLists.txt
++++ b/CMakeLists.txt
+@@ -92,12 +92,15 @@ set( CPACK_DEBIAN_PACKAGE_MAINTAINER "Christian Igel <c.igel at ieee.org>" )
+ # Adjust include, lib, example and doc paths for installation
+ #####################################################################
+ if( UNIX )
+- set( SHARK_INSTALL_INCLUDE_DIR include/ )
+- set( SHARK_INSTALL_LIB_DIR lib/ )
+- set( SHARK_INSTALL_CONTRIB_DIR share/shark/contrib/ )
+- set( SHARK_INSTALL_EXAMPLE_DIR share/shark/examples/ )
+- set( SHARK_INSTALL_DOC_DIR share/shark/doc/ )
++ include(GNUInstallDirs)
++ set( SHARK_INSTALL_BIN_DIR ${CMAKE_INSTALL_BINDIR} CACHE STRING "" )
++ set( SHARK_INSTALL_INCLUDE_DIR ${CMAKE_INSTALL_INCLUDEDIR} CACHE STRING "" )
++ set( SHARK_INSTALL_LIB_DIR ${CMAKE_INSTALL_LIBDIR} CACHE STRING "" )
++ set( SHARK_INSTALL_CONTRIB_DIR ${CMAKE_INSTALL_DATADIR}/shark/contrib CACHE STRING "" )
++ set( SHARK_INSTALL_EXAMPLE_DIR ${CMAKE_INSTALL_DATADIR}/shark/examples CACHE STRING "" )
++ set( SHARK_INSTALL_DOC_DIR ${CMAKE_INSTALL_DATADIR}/shark/doc CACHE STRING "" )
+ else()
++ set( SHARK_INSTALL_BIN_DIR bin )
+ set( SHARK_INSTALL_INCLUDE_DIR include/shark/ )
+ set( SHARK_INSTALL_LIB_DIR lib/ )
+ set( SHARK_INSTALL_CONTRIB_DIR contrib/ )
+diff --git a/src/CMakeLists.txt b/src/CMakeLists.txt
+index 6405ad0..701daf1 100644
+--- a/src/CMakeLists.txt
++++ b/src/CMakeLists.txt
+@@ -49,12 +49,12 @@ set_target_properties( shark PROPERTIES
+
+ install(TARGETS shark
+ EXPORT SharkTargets
+- RUNTIME DESTINATION bin
+- LIBRARY DESTINATION lib
+- ARCHIVE DESTINATION lib)
++ RUNTIME DESTINATION ${SHARK_INSTALL_BIN_DIR}
++ LIBRARY DESTINATION ${SHARK_INSTALL_LIB_DIR}
++ ARCHIVE DESTINATION ${SHARK_INSTALL_LIB_DIR})
+
+ install(TARGETS SharkVersion
+ EXPORT SharkTargets
+- RUNTIME DESTINATION bin)
++ RUNTIME DESTINATION ${SHARK_INSTALL_BIN_DIR})
+
+
diff --git a/debian/patches/Use-system-MathJax.patch b/debian/patches/Use-system-MathJax.patch
new file mode 100644
index 0000000..aaf2598
--- /dev/null
+++ b/debian/patches/Use-system-MathJax.patch
@@ -0,0 +1,54 @@
+From: Ghislain Antony Vaillant <ghisvail at gmail.com>
+Date: Mon, 23 Nov 2015 23:10:03 +0000
+Subject: Use system MathJax.
+
+---
+ doc/Shark.dox.in | 2 +-
+ doc/doxygen_pages/templates/header.html | 4 ++--
+ doc/sphinx_pages/conf.py.in | 3 +--
+ 3 files changed, 4 insertions(+), 5 deletions(-)
+
+diff --git a/doc/Shark.dox.in b/doc/Shark.dox.in
+index c08f5e5..d754567 100644
+--- a/doc/Shark.dox.in
++++ b/doc/Shark.dox.in
+@@ -1194,7 +1194,7 @@ USE_MATHJAX = YES
+ # However, it is strongly recommended to install a local
+ # copy of MathJax from http://www.mathjax.org before deployment.
+
+-MATHJAX_RELPATH = http://cdn.mathjax.org/mathjax/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML
++MATHJAX_RELPATH = /usr/share/javascript/mathjax
+
+ # The MATHJAX_EXTENSIONS tag can be used to specify one or MathJax extension
+ # names that should be enabled during MathJax rendering.
+diff --git a/doc/doxygen_pages/templates/header.html b/doc/doxygen_pages/templates/header.html
+index c09405c..6b001b9 100644
+--- a/doc/doxygen_pages/templates/header.html
++++ b/doc/doxygen_pages/templates/header.html
+@@ -12,10 +12,10 @@
+ <!-- ( nicked from https://groups.google.com/forum/#!msg/mathjax-users/HKA2lNqv-OQ/_Yv72L7MtjYJ ) -->
+ </script>
+ <script type="text/javascript"
+- src="http://cdn.mathjax.org/mathjax/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML&delayStartupUntilConfig">
++ src="/usr/share/javascript/mathjax/MathJax.js?config=TeX-AMS-MML_HTMLorMML&delayStartupUntilConfig">
+ </script>
+ <script type="text/javascript">
+- window.MathJax || document.write('<script src="../../../contrib/mathjax/MathJax.js?config=TeX-AMS-MML_HTMLorMML&delayStartupUntilConfig"><\/script>');
++ window.MathJax || document.write('<script src="/usr/share/javascript/mathjax/MathJax.js?config=TeX-AMS-MML_HTMLorMML&delayStartupUntilConfig"><\/script>');
+ <!--delay nicked from https://groups.google.com/forum/#!msg/mathjax-users/J-36V22-G9Q/AW3ncCbJzS8J -->
+ </script>
+ <script src="../../mlstyle.js"></script>
+diff --git a/doc/sphinx_pages/conf.py.in b/doc/sphinx_pages/conf.py.in
+index fd86bf9..f5c0721 100644
+--- a/doc/sphinx_pages/conf.py.in
++++ b/doc/sphinx_pages/conf.py.in
+@@ -9,8 +9,7 @@ import sys, os, glob
+ # Add any Sphinx extension module names here, as strings. They can be extensions
+ # coming with Sphinx (named 'sphinx.ext.*') or your custom ones.
+ extensions = ['sphinx.ext.mathjax', 'sphinx.ext.todo', 'sphinxcontrib.doxylink'] #using mathjax
+-mathjax_path = 'http://cdn.mathjax.org/mathjax/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML&delayStartupUntilConfig'
+-#delay nicked from https://groups.google.com/forum/#!msg/mathjax-users/J-36V22-G9Q/AW3ncCbJzS8J
++mathjax_path = 'MathJax.js'
+
+ todo_include_todos = True
+
diff --git a/debian/patches/series b/debian/patches/series
new file mode 100644
index 0000000..d7b976f
--- /dev/null
+++ b/debian/patches/series
@@ -0,0 +1,10 @@
+Use-GNUInstallDirs.patch
+Fix-CMake-package-creation.patch
+Use-system-MathJax.patch
+Disable-HTML-timestamps.patch
+Disable-doxylink.patch
+Fix-documentation-install-target.patch
+Fix-examples-install-target.patch
+Fix-library-install-target.patch
+Disable-doxygen-generate-tagfile.patch
+Disable-privacy-breaching-content.patch
--
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