[yade] branch experimental updated (c95ce9f -> 5ac2a25)
Anton Gladky
gladk at moszumanska.debian.org
Tue Feb 17 00:48:30 UTC 2015
This is an automated email from the git hooks/post-receive script.
gladk pushed a change to branch experimental
in repository yade.
from c95ce9f Update changelog and email in control-file.
adds 5cf366c Imported Upstream version 0.97.0
adds 3c57226 Merge tag 'upstream/0.97.0'
adds 79c690d Use packaged versions of python-minieigen and pygts instead of embedded ones.
adds a391f24 Use help2man to generate manpages.
adds 84b1a93 Enable parallel build on some archs. (Closes: #704046)
adds 239acd3 Update changelog.
adds 49e2dbb Use parallel build only on amd64 and i386.
adds e061d31 Do not use python-minieigen on s390 (no binary).
adds f1b69e0 Update changelog.
adds af5c771 Add cgal to BD on ia64.
adds 066e0c2 Ship libraries in libyade-package. Add python-bindings. (Closes: #708469)
adds 6eb310f Add texlive-fonts-recommended to BD.
adds 64e2b46 Update changelog.
adds 8c3c56b Minor changes.
adds 0979374 Update changelog/control.
adds 978a093 Add cgal to BD on ia64.
adds cd9763a Add Breaks/Replaces into libyade.
adds a0945e9 Update changelog.
adds 39d5e4a Use binutils-gold only in amd64 and i386. (Closes: #710313)
adds 790a7ba Update changelog.
adds bbab763 Update debian/watch. Take version number from github.
adds 1c35234 Remove binutils-gold. (Closes: #722544)
adds eb29103 Add BD for new PFV-feature.
adds 27ffe4a Update break/replaces for older yade versions.
adds 6b2b68f Remove mencoder from recommends.
adds fe54741 Add system-component of boost to be linked.
adds 39b346a Override lintian error (seems, false-positive).
adds 9edd741 Use canonical VCS-field.
adds b3f639e Imported Upstream version 1.00.0
adds 630bfc8 Merge tag 'upstream/1.00.0'
adds fdb146b Update changelog.
adds 2b4cc97 Disable parallel build (fails due to RAM consumption)
adds 325f87e Update changelog.
adds d386d37 Add libbz2-dev and zlib1g-dev to BD.
adds dd8d977 Disable Release-Mode in Cmake, pass -ftrack-macro-expansion=0 to reduce RAM-consumption during compilation. (Closes: #726009)
adds 1942de7 Ignore quilt dir
adds de26aa7 Unapply patches after build
adds fd3a5ba Update changelog.
adds 91cd9f0 Set explicitly gcc-4.8 as the compiler for some archs. Thanks to Peter Green <plugwash at p10link.net>. (Closes: #726009)
adds 3ec5238 Update changelog.
adds b4d2aa3 Use clang on archs, where gcc fails. (Closes: #726009)
adds 72c496c Update changelog.
adds 8448883 Imported Upstream version 1.05.0
adds 862dacb Merge tag 'upstream/1.05.0'
adds 82b3047 Do not use clang explicitly.
adds 2f28ccc Remove -ftrack-macro-expansion=0 option.
adds 45816fd Update changelog.
adds bd4dd1f Remove patch, applied by upstream.
adds cf3f8d9 Pass -ftrack-macro-expansion=0 only if gcc>=4.8. (Closes: #726009)
adds 4060631 Update changelog.
adds d42c7de Imported Upstream version 1.07.0
adds 72426ae Merge tag 'upstream/1.07.0'
adds a421b10 Remove patch, applied by upstream.
adds d151f88 Set Standards-Version: 3.9.5. No changes.
adds a9616c6 Add upstream file.
adds c078bb4 Inject additional parameters for weak archs. Thanks to Roland Stigge <stigge at antcom.de>. (Closes: #733152)
adds f5e9a18 Update changelog.
adds 21a2430 Fix version definition for IPython>1.0.0
adds 60475c7 Update changelog.
adds 8204093 Remove google-scripts from documentation.
adds a4415a4 Update changelog.
adds 317bc07 Fix authors field "found character '\t' that cannot start any token"; moreover normalise separation between authors by ' and '
adds 38e5574 Increase number of steps in checkWeight.py.
adds 7705171 Update changelog.
adds e5d5f7e Update Depends for VTK6, should be removed later, when vtk6 will have those.
adds 557b0e4 Fix compilation against new libqglviewer.
adds 36d9fdc Update date in debian/copyright.
adds 22a1b4a Update changelog.
adds 053bf6f Remove some build-depends, which were added to VTK6.
adds a560cb6 Remove --parallel option. (Closes: #741827)
adds 1d1f0d5 Build yade only on amd64 hurd-i386 i386 kfreebsd-amd64 kfreebsd-i386 powerpc s390x sparc ppc64 x32.
adds fa8ee56 Add autotest.
adds d42bd69 Update changelog.
adds 431abb8 Imported Upstream version 1.10.0
adds bc56659 Merge.
adds 3552a3e Set minimal vtk6 version 6.1.0+dfsg-8.
adds cd915f6 Set minimal eigen3 version 3.2.1-2.
adds 8e02049 Add autopkgtest-field to control.
adds 38389f8 Remove patches aplied by upstream.
adds 67a7bc3 Update changelog.
adds 9d3fe99 Fix autopkgtests.
adds ee35863 Update changelog.
adds 902c3d6 Remove python-support from BD.
adds d899560 Revert to "Architecture: any".
adds d87d238 Add --parallel option.
adds 2babdea Fix warning in stderr, which broke autopkgtest.
adds a287c09 Update changelog.
adds a0600ae Imported Upstream version 1.11.0
adds 1da153f Merge tag 'upstream/1.11.0'
adds a3055e0 Do not use parallel build on kfreebsd-amd64 and s390x.
adds f86b405 Remove applied patches.
adds df9e882 Update changelog.
adds 85ceffc Fix autotest DEM-PFV.
adds 672fa7a Let build-indep target be built.
adds f96f8d6 Update changelog.
adds ca274c2 Apply upstream fix: segfault on removing clumps.
adds 494c8fa Update changelog.
adds dcde06c Imported Upstream version 1.11.1
adds bd5cd7f Merge tag 'upstream/1.11.1'
adds bd5a05a Remove patches, applied by upstream.
adds 2ccd2ed Update changelog.
adds 6a919b1 Fix FTBFS on 32-bit platforms.
adds 4d93107 Update changelog.
adds dbf4ef8 Drop parallel builds.
adds 249ec35 Update changelog.
adds 3bba065 Imported Upstream version 1.12.0
adds f64cbd9 Merge tag 'upstream/1.12.0'
adds 1ac4c00 Remove patch applied by upstream.
adds 0b5f802 Set Standards-Version: 3.9.6. No changes.
adds 7e0be6f Update changelog.
adds 7b354b5 Close bug by changelog entry.
adds 07b26ec Fix lintian warnings.
adds 24108c8 Use on i386 and kfreebsd-i386 compiler flags to reduce RAM consumption during compilation.
adds 844cd19 Update changelog.
adds 5ac2a25 Let yade be built only on specific archs.
No new revisions were added by this update.
Summary of changes:
.gitignore | 6 +-
.kdev4/yade.kdev4 | 35 -
CMakeLists.txt | 331 +-
ChangeLog | 5681 ++++++++++++++++++++
INSTALL | 8 +
LICENSE | 47 +-
NEWS | 198 -
README.rst | 10 +-
RELEASE | 2 +-
Yade.kdevelop | 229 -
cMake/FindCholmod.cmake | 41 +-
cMake/FindEigen2.cmake | 74 -
cMake/FindLoki.cmake | 2 +-
cMake/FindMetis.cmake | 16 +
cMake/FindOpenBlas.cmake | 14 +
cMake/FindPythonModule.cmake | 23 +
cMake/GNUInstallDirs.cmake | 188 +
core/Body.cpp | 33 +-
core/Body.hpp | 45 +-
core/BodyContainer.cpp | 73 +-
core/BodyContainer.hpp | 31 +-
core/Bound.cpp | 12 -
core/Bound.hpp | 10 +-
core/Cell.cpp | 4 +-
core/Cell.hpp | 27 +-
core/Clump.cpp | 197 +-
core/Clump.hpp | 17 +-
core/Dispatcher.cpp | 18 -
core/Dispatcher.hpp | 43 +-
core/EnergyTracker.cpp | 12 -
core/EnergyTracker.hpp | 28 +-
core/Engine.cpp | 13 -
core/Engine.hpp | 31 +-
core/FileGenerator.cpp | 7 +-
core/FileGenerator.hpp | 6 +-
core/ForceContainer.hpp | 133 +-
core/FrontEnd.cpp | 21 -
core/FrontEnd.hpp | 6 +-
core/Functor.hpp | 19 +-
core/GLConfig.hpp | 2 +-
core/IGeom.hpp | 8 +-
core/IPhys.hpp | 8 +-
core/Interaction.cpp | 2 +-
core/Interaction.hpp | 8 +-
core/InteractionContainer.cpp | 60 +-
core/InteractionContainer.hpp | 113 +-
core/Material.cpp | 10 +-
core/Material.hpp | 11 +-
core/Omega.cpp | 42 +-
core/Omega.hpp | 34 +-
core/PartialEngine.cpp | 10 -
core/PartialEngine.hpp | 4 +-
core/Scene.cpp | 49 +-
core/Scene.hpp | 39 +-
core/Shape.cpp | 2 -
core/Shape.hpp | 8 +-
core/SimulationFlow.cpp | 2 +-
core/State.cpp | 35 +-
core/State.hpp | 12 +-
core/ThreadRunner.cpp | 4 +-
core/TimeStepper.cpp | 29 -
core/TimeStepper.hpp | 5 +-
core/Timing.hpp | 1 -
core/corePlugins.cpp | 41 +-
core/main/main.py.in | 81 +-
core/main/pyboot.cpp | 22 +-
core/main/yade-batch.in | 41 +-
debian/changelog | 202 +
debian/control | 113 +-
debian/copyright | 22 +-
debian/libyade.install | 1 +
debian/libyade.lintian-overrides | 1 +
debian/patches/01_remove_google_analytics.patch | 28 +
debian/patches/series | 1 +
debian/python-yade.lintian-overrides | 1 +
debian/python-yade.pyinstall | 3 +
debian/rules | 44 +-
debian/tests/control | 1 +
debian/tests/yadetest | 5 +
debian/upstream/metadata | 11 +
debian/watch | 4 +-
debian/yade-doc.links | 1 -
debian/yade.install | 2 +-
debian/yade.lintian-overrides | 3 +-
doc/references.bib | 324 +-
doc/sphinx/citing.rst | 2 +-
doc/sphinx/conf.py | 13 +-
doc/sphinx/external.rst | 25 -
doc/sphinx/fig/dispatch-loop.svg | 71 +-
doc/sphinx/fig/micro-domains.png | Bin 0 -> 37528 bytes
doc/sphinx/formulation.rst | 96 +-
doc/sphinx/github.rst | 204 +
doc/sphinx/index-toctree.rst | 4 +-
doc/sphinx/installation.rst | 175 +-
doc/sphinx/introduction.rst | 32 +-
...hon_directive012.py => ipython_directive200.py} | 634 ++-
doc/sphinx/prog.rst | 155 +-
doc/sphinx/publications.rst.in | 2 +-
doc/sphinx/references.bib | 297 -
doc/sphinx/templates/index.html | 13 +-
doc/sphinx/tutorial-hands-on.rst | 4 -
doc/sphinx/tutorial/06-periodic-triaxial-test.py | 18 +-
doc/sphinx/user.rst | 396 +-
doc/sphinx/yadeSphinx.py | 22 +-
doc/yade-articles.bib | 852 +--
doc/yade-conferences.bib | 128 +-
doc/yade-theses.bib | 20 +-
examples/CapillaryPhys-example.py | 8 +-
examples/FluidCouplingLBM/Buoyancy_Gradient.m | 138 +
examples/FluidCouplingLBM/buoyancy.py | 195 +
examples/FluidCouplingLBM/yadeLBMvisu.m | 151 +
examples/FluidCouplingPFV/oedometer.py | 165 +
examples/LudingPM.py | 104 +
examples/PIDController.py | 56 +
examples/ResetRandomPosition.py | 10 +-
examples/ViscElMatchMaker.py | 64 +
.../simple-scene-plot-NewtonIntegrator.py} | 12 +-
.../simple-scene-plot-RungeKuttaCashKarp54.py} | 44 +-
.../baraban/{baraban.py => BicyclePedalEngine.py} | 9 +-
examples/baraban/baraban.py | 7 +-
examples/baraban/rotating-cylinder.py | 4 +-
examples/billiard.py | 58 +
examples/bouncingbubble.py | 20 +
examples/bulldozer/README | 2 +-
examples/bulldozer/bulldozer.py | 9 +-
examples/bulldozer/bulldozerVTK.py | 6 +-
examples/capillary/capillar.py | 97 +
examples/capillary/liquidmigration/showcase.py | 130 +
.../chained-cylinders/CohesiveCylinderSphere.py | 7 +-
.../chained-cylinders/chained-cylinder-roots.py | 11 +-
.../chained-cylinders/chained-cylinder-spring.py | 6 +-
examples/clumps/addToClump-example.py | 22 +-
examples/clumps/apply-buoyancy-clumps.py | 136 +
examples/clumps/clump-hopper-test.py | 79 +
examples/clumps/clump-hopper-viscoelastic.py | 11 +-
examples/clumps/clump-inbox-viscoelastic.py | 11 +-
examples/clumps/clump-viscoelastic.py | 9 +-
examples/clumps/releaseFromClump-example.py | 10 +-
examples/clumps/replaceByClumps-example.py | 26 +-
.../{addToClump-example.py => save-load-clumps.py} | 42 +-
examples/clumps/triax-basic-with-clumps.py | 2 +-
examples/concrete/README | 1 -
examples/concrete/cpm-dem3dof-scgeom.py | 86 -
examples/concrete/dem3dof-scgeom.table | 21 -
examples/concrete/interaction-histogram.py | 2 +-
examples/concrete/periodic.py | 18 +-
examples/concrete/triax.py | 210 +
examples/concrete/uniax.py | 52 +-
examples/conveyor/conveyor.geo | 24 +
examples/conveyor/conveyor.mesh | 1360 +++++
examples/conveyor/conveyor.py | 55 +
examples/funnel.py | 4 +-
examples/grids/Simple_Grid_Falling.py | 7 +-
examples/gts-horse/gts-horse.py | 6 +-
examples/gts-horse/gts-random-pack-obb.py | 10 +-
examples/gts-horse/gts-random-pack.py | 10 +-
examples/hdaps.py | 4 +-
examples/jointedCohesiveFrictionalPM/README | 16 +
examples/jointedCohesiveFrictionalPM/gravityBis.py | 127 +
.../jointedCohesiveFrictionalPM/gravityLoading.py | 152 +
.../gravityLoading_velocityField_arrows.png | Bin 0 -> 277752 bytes
.../gravityLoading_velocityField_spheres.png | Bin 0 -> 147381 bytes
examples/jointedCohesiveFrictionalPM/identifBis.py | 134 +
.../identificationSpheresOnJoint.py | 209 +
.../jointedCohesiveFrictionalPM/jointedModel.png | Bin 0 -> 221911 bytes
.../packInGtsSurface.py | 46 +
.../parallellepiped.gts | 39 +
.../persistentPlane30Deg.stl | Bin 0 -> 884 bytes
.../jointedCohesiveFrictionalPM/testingJoint.py | 135 +
examples/mill.py | 8 +-
examples/normalInelasticity-test.py | 4 +-
examples/not-working/Se3Interpolator.py | 2 +-
examples/not-working/facet-topo.py | 16 +-
examples/not-working/insertion-sort-collider.py | 10 +-
examples/not-working/triax-identical-results.py | 8 +-
examples/packs/packs.py | 46 +-
examples/periodic-compress.py | 6 +-
examples/periodic-grow.py | 8 +-
examples/periodicSandPile.py | 8 +-
examples/polyhedra/ball.py | 47 +
examples/polyhedra/free-fall.py | 58 +
examples/polyhedra/irregular.py | 63 +
examples/polyhedra/wall.py | 72 +
examples/ring2d/ringCundallDamping.py | 5 +-
examples/ring2d/ringSimpleViscoelastic.py | 8 +-
examples/rod-penetration/model.py | 5 +-
examples/rotationalResistance.py | 44 +
.../simple-scene/simple-scene-energy-tracking.py | 16 +-
examples/simple-scene/simple-scene-plot.py | 8 +-
examples/simple-scene/simple-scene.py | 13 +-
examples/simple-shear/simpleShear.py | 27 +-
examples/sph/README | 5 +
examples/sph/box.geo | 27 +
examples/sph/box.mesh | 1273 +++++
examples/sph/cpt/a | 0
examples/sph/dam_break.py | 89 +
examples/sph/sph_box.py | 57 +
examples/sph/testKernelFunc.py | 91 +
examples/sph/toystar.py | 56 +
examples/sph/watercolumn.py | 69 +
examples/{test => }/spheresFactory.py | 9 +-
examples/stl-gts/README | 7 +
examples/stl-gts/cone.geo | 38 +
examples/stl-gts/convert2stl.sh | 3 +
examples/stl-gts/gts-stl.py | 42 +
examples/tesselationwrapper/tesselationWrapper.py | 2 +
examples/test/CundallStrackTest.py | 21 -
examples/test/Damping_HM.py | 9 +-
examples/test/Dem3DofGeom.py | 41 -
.../test/WireMatPM/net-2part-displ-unloading.py | 6 +-
examples/test/WireMatPM/net-2part-displ.py | 6 +-
examples/test/WireMatPM/net-2part-strain.py | 9 +-
examples/test/batch/sim.py | 5 +-
examples/test/beam-l6geom.py | 8 +-
examples/test/callback.py | 8 +-
examples/test/clump.py | 10 +-
examples/test/clumpPack.py | 4 +-
examples/test/collider-stride-triax.py | 4 +-
examples/test/collider-stride.py | 6 +-
examples/test/collider-sweep-simple.py | 6 +-
examples/test/energy.py | 10 +-
examples/test/exact-rot-facet.py | 9 +-
examples/test/exact-rot.py | 10 +-
examples/test/facet-sphere-ViscElBasic-peri.py | 15 +-
examples/test/facet-sphere-ViscElBasic.py | 11 +-
examples/test/facet-sphere.py | 8 +-
examples/test/flat-collider.py | 6 +-
examples/test/force-move.py | 2 +-
examples/test/force-network-video.py | 4 +-
examples/test/genCylLSM.py | 2 -
examples/test/helix.py | 2 +-
examples/test/interpolating-force.py | 6 +-
examples/test/kinematic.py | 4 +-
examples/test/mindlin.py | 9 +-
examples/test/multi/multi.py | 10 +-
examples/test/pack-cloud.py | 2 +-
.../paraview-spheres-solid-section/export_text.py | 12 +
.../paraview-spheres-solid-section/pv_section.py | 660 +++
examples/test/performance/checkPerf.py | 86 +-
examples/test/peri3dController_example1.py | 2 +-
examples/test/peri3dController_shear.py | 8 +-
.../test/peri3dController_triaxialCompression.py | 4 +-
examples/test/periodic-geom-compare.py | 7 +-
examples/test/periodic-shear.py | 13 +-
examples/test/periodic-simple-shear.py | 45 +-
examples/test/periodic-simple.py | 10 +-
examples/test/periodic-triax-settingHsize.py | 7 +-
examples/test/periodic-triax.py | 5 +-
examples/test/qt4-pyqglviewer.py | 2 +-
examples/test/remove-body.py | 6 +-
examples/test/shear.py | 4 +-
examples/test/sphere-sphere-ViscElBasic-peri.py | 9 +-
examples/test/subdomain-balancer.py | 16 +-
examples/test/test-sphere-facet-corner.py | 8 +-
examples/test/test-sphere-facet.py | 4 +-
.../test/test_Ip2_FrictMat_CpmMat_FrictPhys.py | 9 +-
examples/test/triax-basic.py | 4 +-
examples/test/triax-cohesive.py | 4 +-
examples/test/unstructuredGrid.py | 38 +
examples/test/unv-read/unvRead.py | 1 -
examples/test/vtk-exporter/vtkExporter.py | 43 +-
examples/test/vtkPeriodicCell.py | 23 +
examples/test/wall.py | 20 +-
examples/tetra/oneTetra.py | 43 +
examples/tetra/oneTetraPoly.py | 43 +
examples/tetra/twoTetras.py | 110 +
examples/tetra/twoTetrasPoly.py | 116 +
examples/timeStepperUsage.py | 8 +-
examples/triax-tutorial/script-session1.py | 24 +-
examples/triax-tutorial/script-session2.py | 11 +-
examples/tunnel-pack.py | 14 +-
gui/CMakeLists.txt | 7 +-
gui/qt4/GLViewer.cpp | 464 +-
gui/qt4/GLViewer.hpp | 18 +-
gui/qt4/GLViewerDisplay.cpp | 281 +
gui/qt4/GLViewerMouse.cpp | 117 +
gui/qt4/OpenGLManager.cpp | 2 +-
gui/qt4/SerializableEditor.py | 127 +-
gui/qt4/XYZ.xpm | 45 +
gui/qt4/YZX.xpm | 45 +
gui/qt4/ZXY.xpm | 45 +
gui/qt4/_GLViewer.cpp | 11 +-
gui/qt4/__init__.py | 11 +-
gui/qt4/controller.ui | 8 +-
gui/qt4/img.qrc | 8 +-
gui/qt4/yade-favicon.xpm | 229 +
lib/base/Logging.hpp | 17 +-
lib/base/Math.cpp | 17 +-
lib/base/Math.hpp | 183 +-
lib/base/openmp-accu.hpp | 73 +-
lib/factory/ClassFactory.cpp | 2 +-
lib/factory/ClassFactory.hpp | 25 +-
lib/factory/DynLibManager.cpp | 12 -
lib/factory/DynLibManager.hpp | 21 +-
lib/import/STLReader.hpp | 19 +-
lib/import/utils.hpp | 5 +-
lib/multimethods/DynLibDispatcher.hpp | 13 +-
lib/multimethods/FunctorWrapper.hpp | 3 +-
lib/multimethods/Indexable.cpp | 34 -
lib/multimethods/Indexable.hpp | 14 +-
lib/opengl/GLUtils.cpp | 3 +-
lib/opengl/GLUtils.hpp | 3 +-
lib/opengl/OpenGLWrapper.hpp | 59 +-
lib/pyutil/README | 2 +-
lib/pyutil/doc_opts.hpp | 1 -
lib/pyutil/gil.cpp | 2 +-
lib/pyutil/numpy_boost.hpp | 118 +-
lib/pyutil/raw_constructor.hpp | 1 -
lib/serialization/ObjectIO.hpp | 12 +-
lib/serialization/Serializable.cpp | 35 +-
lib/serialization/Serializable.hpp | 75 +-
lib/smoothing/WeightedAverage2d.hpp | 73 +-
lib/triangulation/FlowBoundingSphere.cpp | 28 -
lib/triangulation/FlowBoundingSphere.hpp | 352 +-
lib/triangulation/FlowBoundingSphere.ipp | 1358 ++---
lib/triangulation/FlowBoundingSphereLinSolv.hpp | 192 +
lib/triangulation/FlowBoundingSphereLinSolv.ipp | 991 ++++
.../KinematicLocalisationAnalyser.cpp | 68 +-
.../KinematicLocalisationAnalyser.hpp | 26 +-
lib/triangulation/Network.hpp | 103 +-
lib/triangulation/Network.ipp | 410 +-
lib/triangulation/PeriodicFlow.cpp | 651 ---
lib/triangulation/PeriodicFlow.hpp | 471 +-
lib/triangulation/PeriodicFlowLinSolv.hpp | 47 +
lib/triangulation/PeriodicFlowLinSolv.ipp | 252 +
lib/triangulation/RegularTriangulation.h | 109 +-
lib/triangulation/Tenseur3.cpp | 16 +-
lib/triangulation/Tenseur3.h | 234 +-
lib/triangulation/Tesselation.h | 152 +-
lib/triangulation/Tesselation.ipp | 388 +-
lib/triangulation/Timer.cpp | 2 -
lib/triangulation/Timer.h | 2 +
lib/triangulation/TriaxialState.cpp | 8 +-
lib/triangulation/TriaxialState.h | 23 +-
lib/triangulation/basicVTKwritter.cpp | 2 -
lib/triangulation/basicVTKwritter.hpp | 5 +
lib/triangulation/def_types.h | 226 -
pkg/common/Aabb.cpp | 13 -
pkg/common/Aabb.hpp | 6 +-
pkg/common/Bo1_Aabb.cpp | 87 +
pkg/common/Bo1_Aabb.hpp | 66 +
pkg/common/Bo1_Box_Aabb.cpp | 35 -
pkg/common/Bo1_Box_Aabb.hpp | 24 -
pkg/common/Bo1_Facet_Aabb.cpp | 43 -
pkg/common/Bo1_Facet_Aabb.hpp | 21 -
pkg/common/Bo1_Sphere_Aabb.cpp | 38 -
pkg/common/Bo1_Sphere_Aabb.hpp | 26 -
pkg/common/BoundaryController.cpp | 4 -
pkg/common/BoundaryController.hpp | 6 +-
pkg/common/Box.cpp | 15 -
pkg/common/Box.hpp | 4 +-
pkg/common/Callbacks.cpp | 13 -
pkg/common/Callbacks.hpp | 7 +-
pkg/common/Collider.cpp | 18 +-
pkg/common/Collider.hpp | 12 +-
pkg/common/CylScGeom6D.cpp | 24 -
pkg/common/CylScGeom6D.hpp | 20 +-
pkg/common/Cylinder.cpp | 69 +-
pkg/common/Cylinder.hpp | 35 +-
pkg/common/Dispatching.cpp | 32 +-
pkg/common/Dispatching.hpp | 25 +-
pkg/common/ElastMat.cpp | 5 -
pkg/common/ElastMat.hpp | 8 +-
pkg/common/Facet.cpp | 6 +-
pkg/common/Facet.hpp | 7 +-
pkg/common/FieldApplier.cpp | 5 -
pkg/common/FieldApplier.hpp | 8 +-
pkg/common/ForceEngine.cpp | 107 +-
pkg/common/ForceEngine.hpp | 29 +-
pkg/common/ForceResetter.cpp | 10 -
pkg/common/ForceResetter.hpp | 8 +-
pkg/common/GLDrawFunctors.cpp | 7 -
pkg/common/GLDrawFunctors.hpp | 20 +-
pkg/common/Gl1_Aabb.cpp | 33 -
pkg/common/Gl1_Aabb.hpp | 22 -
pkg/common/Gl1_Box.cpp | 29 -
pkg/common/Gl1_Box.hpp | 23 -
pkg/common/Gl1_Facet.cpp | 61 -
pkg/common/Gl1_Facet.hpp | 26 -
pkg/common/Gl1_NormPhys.cpp | 149 +-
pkg/common/Gl1_NormPhys.hpp | 21 +-
pkg/common/{Gl1_Sphere.cpp => Gl1_Primitives.cpp} | 133 +-
pkg/common/{Gl1_Sphere.hpp => Gl1_Primitives.hpp} | 49 +-
pkg/common/GravityEngines.cpp | 24 +-
pkg/common/GravityEngines.hpp | 6 +-
pkg/common/Grid.cpp | 410 +-
pkg/common/Grid.hpp | 129 +-
pkg/common/Grid_GUI.cpp | 67 +
pkg/common/InsertionSortCollider.cpp | 300 +-
pkg/common/InsertionSortCollider.hpp | 28 +-
pkg/common/InteractionLoop.cpp | 79 +-
pkg/common/InteractionLoop.hpp | 19 +-
pkg/common/KinematicEngines.cpp | 87 +-
pkg/common/KinematicEngines.hpp | 39 +-
pkg/common/MatchMaker.cpp | 9 +-
pkg/common/MatchMaker.hpp | 5 +-
pkg/common/NormShearPhys.cpp | 8 -
pkg/common/NormShearPhys.hpp | 6 +-
pkg/common/OpenGLRenderer.cpp | 30 +-
pkg/common/OpenGLRenderer.hpp | 16 +-
pkg/common/ParallelEngine.cpp | 28 +-
pkg/common/ParallelEngine.hpp | 7 +-
pkg/common/PeriodicEngines.cpp | 3 -
pkg/common/PeriodicEngines.hpp | 61 +-
pkg/common/PersistentTriangulationCollider.cpp | 20 +-
pkg/common/PersistentTriangulationCollider.hpp | 10 +-
pkg/common/PyRunner.cpp | 2 -
pkg/common/PyRunner.hpp | 9 +-
pkg/common/Recorder.cpp | 15 -
pkg/common/Recorder.hpp | 17 +-
pkg/common/ResetRandomPosition.cpp | 13 +-
pkg/common/ResetRandomPosition.hpp | 10 +-
pkg/common/SPHEngine.cpp | 170 +
pkg/common/SPHEngine.hpp | 35 +
pkg/common/SpatialQuickSortCollider.cpp | 8 +-
pkg/common/SpatialQuickSortCollider.hpp | 6 +-
pkg/common/Sphere.cpp | 3 -
pkg/common/Sphere.hpp | 4 +-
pkg/common/StepDisplacer.cpp | 24 -
pkg/common/StepDisplacer.hpp | 24 +-
pkg/common/TorqueEngine.cpp | 12 -
pkg/common/TorqueEngine.hpp | 10 +-
pkg/common/Wall.cpp | 8 +-
pkg/common/Wall.hpp | 6 +-
pkg/common/ZECollider.cpp | 28 +-
pkg/common/ZECollider.hpp | 10 +-
pkg/common/common.cpp | 31 +
pkg/dem/BubbleMat.cpp | 95 +
pkg/dem/BubbleMat.hpp | 87 +
pkg/dem/CapillaryPhys.cpp | 39 +-
pkg/dem/CapillaryPhys.hpp | 32 +-
pkg/dem/CapillaryStressRecorder.cpp | 47 +-
pkg/dem/CapillaryStressRecorder.hpp | 2 +-
pkg/dem/CapillaryTriaxialTest.cpp | 134 +-
pkg/dem/CapillaryTriaxialTest.hpp | 6 +-
pkg/dem/CohFrictMat.cpp | 19 -
pkg/dem/CohFrictMat.hpp | 40 -
pkg/dem/CohFrictPhys.cpp | 23 -
pkg/dem/CohFrictPhys.hpp | 47 -
pkg/dem/CohesiveFrictionalContactLaw.cpp | 164 +-
pkg/dem/CohesiveFrictionalContactLaw.hpp | 111 +-
pkg/dem/CohesiveFrictionalPM.cpp | 200 -
pkg/dem/CohesiveFrictionalPM.hpp | 114 -
pkg/dem/CohesiveStateRPMRecorder.cpp | 19 -
pkg/dem/CohesiveStateRPMRecorder.hpp | 19 -
pkg/dem/CohesiveTriaxialTest.cpp | 108 +-
pkg/dem/CohesiveTriaxialTest.hpp | 4 +-
pkg/dem/ConcretePM.cpp | 356 +-
pkg/dem/ConcretePM.hpp | 113 +-
pkg/dem/Dem3DofGeom_FacetSphere.cpp | 221 -
pkg/dem/Dem3DofGeom_FacetSphere.hpp | 80 -
pkg/dem/Dem3DofGeom_SphereSphere.cpp | 196 -
pkg/dem/Dem3DofGeom_SphereSphere.hpp | 80 -
pkg/dem/Dem3DofGeom_WallSphere.cpp | 117 -
pkg/dem/Dem3DofGeom_WallSphere.hpp | 70 -
pkg/dem/DemXDofGeom.cpp | 5 -
pkg/dem/DemXDofGeom.hpp | 50 +-
pkg/dem/Disp2DPropLoadEngine.cpp | 20 +-
pkg/dem/Disp2DPropLoadEngine.hpp | 6 +-
pkg/dem/DomainLimiter.cpp | 77 +-
pkg/dem/DomainLimiter.hpp | 12 +-
pkg/dem/ElasticContactLaw.cpp | 25 +-
pkg/dem/ElasticContactLaw.hpp | 17 +-
pkg/dem/FacetTopologyAnalyzer.cpp | 14 +-
pkg/dem/FacetTopologyAnalyzer.hpp | 4 +-
pkg/dem/FlatGridCollider.cpp | 14 +-
pkg/dem/FlatGridCollider.hpp | 3 +-
pkg/dem/FlowEngine.cpp | 1154 ----
pkg/dem/FlowEngine.hpp | 439 --
pkg/dem/ForceTorqueRecorder.hpp | 4 +-
pkg/dem/FrictPhys.cpp | 71 +-
pkg/dem/FrictPhys.hpp | 34 +-
pkg/dem/FrictViscoPM.cpp | 228 +
pkg/dem/FrictViscoPM.hpp | 118 +
pkg/dem/GeneralIntegratorInsertionSortCollider.cpp | 226 +
pkg/dem/GeneralIntegratorInsertionSortCollider.hpp | 39 +
pkg/dem/GlobalStiffnessTimeStepper.cpp | 99 +-
pkg/dem/GlobalStiffnessTimeStepper.hpp | 11 +-
pkg/dem/HertzMindlin.cpp | 168 +-
pkg/dem/HertzMindlin.hpp | 112 +-
pkg/dem/Ig2_Box_Sphere_ScGeom.cpp | 16 +-
pkg/dem/Ig2_Box_Sphere_ScGeom.hpp | 6 +-
pkg/dem/Ig2_Facet_Sphere_ScGeom.cpp | 62 +-
pkg/dem/Ig2_Facet_Sphere_ScGeom.hpp | 32 +-
pkg/dem/Ig2_Sphere_Sphere_ScGeom.cpp | 21 +-
pkg/dem/Ig2_Sphere_Sphere_ScGeom.hpp | 4 +-
pkg/dem/InelastCohFrictMat.cpp | 7 -
pkg/dem/InelastCohFrictMat.hpp | 37 -
pkg/dem/InelastCohFrictPM.cpp | 271 +
pkg/dem/InelastCohFrictPM.hpp | 149 +
pkg/dem/InelastCohFrictPhys.cpp | 14 -
pkg/dem/InelastCohFrictPhys.hpp | 54 -
pkg/dem/Integrator.cpp | 350 ++
pkg/dem/Integrator.hpp | 112 +
...p2_2xInelastCohFrictMat_InelastCohFrictPhys.cpp | 110 -
...p2_2xInelastCohFrictMat_InelastCohFrictPhys.hpp | 26 -
...2xNormalInelasticMat_NormalInelasticityPhys.cpp | 69 -
...2xNormalInelasticMat_NormalInelasticityPhys.hpp | 38 -
.../Ip2_CohFrictMat_CohFrictMat_CohFrictPhys.cpp | 101 -
.../Ip2_CohFrictMat_CohFrictMat_CohFrictPhys.hpp | 34 -
pkg/dem/Ip2_ElastMat.cpp | 63 +
pkg/dem/Ip2_ElastMat.hpp | 24 +
pkg/dem/Ip2_FrictMat_FrictMat_CapillaryPhys.cpp | 56 -
pkg/dem/Ip2_FrictMat_FrictMat_CapillaryPhys.hpp | 29 -
pkg/dem/Ip2_FrictMat_FrictMat_FrictPhys.cpp | 83 -
pkg/dem/Ip2_FrictMat_FrictMat_FrictPhys.hpp | 38 -
.../Ip2_FrictMat_FrictMat_MindlinCapillaryPhys.cpp | 95 -
.../Ip2_FrictMat_FrictMat_MindlinCapillaryPhys.hpp | 61 -
pkg/dem/JointedCohesiveFrictionalPM.cpp | 325 ++
pkg/dem/JointedCohesiveFrictionalPM.hpp | 112 +
pkg/dem/KinemCNDEngine.cpp | 53 -
pkg/dem/KinemCNDEngine.hpp | 38 -
pkg/dem/KinemCNLEngine.cpp | 61 -
pkg/dem/KinemCNLEngine.hpp | 43 -
pkg/dem/KinemCNSEngine.cpp | 51 -
pkg/dem/KinemCNSEngine.hpp | 41 -
pkg/dem/KinemCTDEngine.cpp | 73 -
pkg/dem/KinemCTDEngine.hpp | 42 -
pkg/dem/KinemC__Engine.cpp | 169 +
pkg/dem/KinemC__Engine.hpp | 108 +
pkg/dem/KinemSimpleShearBox.cpp | 39 +-
pkg/dem/KinemSimpleShearBox.hpp | 8 +-
pkg/dem/L3Geom.cpp | 60 +-
pkg/dem/L3Geom.hpp | 30 +-
...ScGeom6D_InelastCohFrictPhys_CohesionMoment.cpp | 279 -
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pkg/dem/Law2_ScGeom_CapillaryPhys_Capillarity.cpp | 118 +-
pkg/dem/Law2_ScGeom_CapillaryPhys_Capillarity.hpp | 32 +-
pkg/dem/LudingPM.cpp | 199 +
pkg/dem/LudingPM.hpp | 68 +
pkg/dem/MicroMacroAnalyser.cpp | 36 +-
pkg/dem/MicroMacroAnalyser.hpp | 12 +-
pkg/dem/NewtonIntegrator.cpp | 99 +-
pkg/dem/NewtonIntegrator.hpp | 17 +-
pkg/dem/NormalInelasticMat.cpp | 12 -
pkg/dem/NormalInelasticMat.hpp | 32 -
...alInelasticityLaw.cpp => NormalInelasticPM.cpp} | 72 +-
pkg/dem/NormalInelasticPM.hpp | 114 +
pkg/dem/NormalInelasticityLaw.hpp | 51 -
pkg/dem/NormalInelasticityPhys.cpp | 18 -
pkg/dem/NormalInelasticityPhys.hpp | 38 -
pkg/dem/ParticleSizeDistrbutionRPMRecorder.cpp | 293 -
pkg/dem/ParticleSizeDistrbutionRPMRecorder.hpp | 51 -
pkg/dem/PeriIsoCompressor.cpp | 57 +-
pkg/dem/PeriIsoCompressor.hpp | 32 +-
pkg/dem/Polyhedra.cpp | 512 ++
pkg/dem/Polyhedra.hpp | 314 ++
pkg/dem/Polyhedra_Ig2.cpp | 326 ++
pkg/dem/Polyhedra_Ig2.hpp | 72 +
pkg/dem/Polyhedra_splitter.cpp | 121 +
pkg/dem/Polyhedra_splitter.hpp | 33 +
pkg/dem/Polyhedra_support.cpp | 849 +++
pkg/dem/RockPM.cpp | 202 -
pkg/dem/RockPM.hpp | 96 -
pkg/dem/RungeKuttaCashKarp54Integrator.cpp | 34 +
pkg/dem/RungeKuttaCashKarp54Integrator.hpp | 49 +
pkg/dem/STLImporter.cpp | 4 +-
pkg/dem/STLImporter.hpp | 6 +-
pkg/dem/SampleCapillaryPressureEngine.cpp | 22 +-
pkg/dem/SampleCapillaryPressureEngine.hpp | 6 +-
pkg/dem/ScGeom.cpp | 6 +-
pkg/dem/ScGeom.hpp | 15 +-
pkg/dem/Shop.cpp | 918 ----
pkg/dem/Shop.hpp | 30 +-
pkg/dem/Shop_01.cpp | 453 ++
pkg/dem/Shop_02.cpp | 524 ++
pkg/dem/SimpleShear.cpp | 79 +-
pkg/dem/SimpleShear.hpp | 5 +-
pkg/dem/SnapshotEngine.hpp | 8 +-
pkg/dem/SpherePack.cpp | 211 +-
pkg/dem/SpherePack.hpp | 60 +-
pkg/dem/SpheresFactory.cpp | 8 +-
pkg/dem/SpheresFactory.hpp | 6 +-
pkg/dem/TesselationWrapper.cpp | 56 +-
pkg/dem/TesselationWrapper.hpp | 76 +-
pkg/dem/Tetra.cpp | 670 ++-
pkg/dem/Tetra.hpp | 132 +-
pkg/dem/ThreeDTriaxialEngine.cpp | 17 +-
pkg/dem/ThreeDTriaxialEngine.hpp | 9 +-
pkg/dem/TriaxialCompressionEngine.cpp | 32 +-
pkg/dem/TriaxialCompressionEngine.hpp | 8 +-
pkg/dem/TriaxialStateRecorder.cpp | 37 +-
pkg/dem/TriaxialStateRecorder.hpp | 3 +-
pkg/dem/TriaxialStressController.cpp | 108 +-
pkg/dem/TriaxialStressController.hpp | 26 +-
pkg/dem/TriaxialTest.cpp | 102 +-
pkg/dem/TriaxialTest.hpp | 4 +-
pkg/dem/UnbalancedForceCallbacks.cpp | 10 +-
pkg/dem/UnbalancedForceCallbacks.hpp | 4 +-
pkg/dem/UniaxialStrainer.cpp | 22 +-
pkg/dem/UniaxialStrainer.hpp | 17 +-
pkg/dem/VTKRecorder.cpp | 634 ++-
pkg/dem/VTKRecorder.hpp | 9 +-
pkg/dem/ViscoelasticCapillarPM.cpp | 607 +++
pkg/dem/ViscoelasticCapillarPM.hpp | 114 +
pkg/dem/ViscoelasticPM.cpp | 326 +-
pkg/dem/ViscoelasticPM.hpp | 73 +-
pkg/dem/WirePM.cpp | 200 +-
pkg/dem/WirePM.hpp | 50 +-
pkg/lbm/HydrodynamicsLawLBM.cpp | 1368 +++++
pkg/lbm/HydrodynamicsLawLBM.hpp | 302 ++
pkg/lbm/LBMbody.hpp | 46 +
pkg/lbm/LBMlink.hpp | 44 +
pkg/lbm/LBMnode.cpp | 124 +
pkg/lbm/LBMnode.hpp | 67 +
pkg/pfv/DFNFlow.cpp | 259 +
pkg/pfv/DummyFlowEngine.cpp | 59 +
pkg/pfv/FlowEngine.cpp | 39 +
pkg/pfv/FlowEngine.hpp | 34 +
pkg/pfv/FlowEngine.hpp.in | 446 ++
pkg/pfv/FlowEngine.ipp.in | 752 +++
pkg/pfv/PeriodicFlowEngine.cpp | 531 ++
pkg/pfv/SoluteFlowEngine.cpp | 196 +
pkg/pfv/TwoPhaseFlowEngine.cpp | 296 +
pkg/pfv/TwoPhaseFlowEngine.hpp | 107 +
pkg/pfv/UnsaturatedEngine.cpp | 1119 ++++
py/3rd-party/README | 6 +-
py/3rd-party/mtTkinter-0.4/gpl.txt | 674 +++
py/3rd-party/mtTkinter-0.4/lgpl.txt | 165 +
.../{mtTkinter-0.3 => mtTkinter-0.4}/mtTkinter.py | 15 +
py/CMakeLists.txt | 79 +-
py/WeightedAverage2d.cpp | 4 +-
py/__init__.py.in | 24 +-
py/_eudoxos.cpp | 335 --
py/_extraDocs.py | 9 +-
py/_polyhedra_utils.cpp | 543 ++
py/_utils.cpp | 151 +-
py/_utils.hpp | 148 +
py/bodiesHandling.py | 8 +-
py/config.py.in | 7 +-
py/eudoxos.py | 311 --
py/export.py | 813 ++-
py/geom.py | 81 +-
py/manpage.py | 89 -
py/mathWrap/miniEigen.cpp | 29 +-
py/pack/_packObb.cpp | 32 +-
py/pack/_packPredicates.cpp | 52 +-
py/pack/_packSpheres.cpp | 39 +-
py/pack/pack.py | 30 +-
py/plot.py | 9 +-
py/polyhedra_utils.py | 159 +
py/post2d.py | 13 +-
py/runtime.py | 2 +-
py/system.py | 2 -
py/tests/__init__.py | 10 +-
py/tests/clump.py | 10 +-
py/tests/cohesive-chain.py | 7 +-
py/tests/core.py | 6 +-
py/tests/engines.py | 5 +-
py/tests/pbc.py | 12 +-
py/tests/wrapper.py | 6 +-
py/timing.py | 67 +-
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py/wrapper/customConverters.cpp | 200 +-
py/wrapper/yadeWrapper.cpp | 445 +-
py/ymport.py | 92 +-
scripts/README | 40 -
scripts/checks-and-tests/checks/DEM-PFV-check.py | 155 +
scripts/checks-and-tests/checks/README | 2 +
.../checks-and-tests/checks/checkClumpHopper.py | 80 +
scripts/checks-and-tests/checks/checkGravity.py | 7 +-
.../checks/checkLiquidMigration.py | 104 +
scripts/checks-and-tests/checks/checkList.py | 16 +-
scripts/checks-and-tests/checks/checkTestDummy.py | 7 +
scripts/checks-and-tests/checks/checkTestTriax.py | 3 +
scripts/checks-and-tests/checks/checkViscElEng.py | 57 +
scripts/checks-and-tests/checks/checkViscElPM.py | 110 +
scripts/checks-and-tests/checks/checkWeight.py | 5 +-
.../checks-and-tests/checks/checkWirePM.py | 70 +-
scripts/checks-and-tests/checks/data/100spheres | 100 +
scripts/erskine3.py | 0
scripts/hackett.py | 0
scripts/linkdeps.py | 2 +-
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scripts/rename-class.py | 0
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delete mode 100644 pkg/dem/DemXDofGeom.cpp
delete mode 100644 pkg/dem/FlowEngine.cpp
delete mode 100644 pkg/dem/FlowEngine.hpp
create mode 100644 pkg/dem/FrictViscoPM.cpp
create mode 100644 pkg/dem/FrictViscoPM.hpp
create mode 100644 pkg/dem/GeneralIntegratorInsertionSortCollider.cpp
create mode 100644 pkg/dem/GeneralIntegratorInsertionSortCollider.hpp
delete mode 100644 pkg/dem/InelastCohFrictMat.cpp
delete mode 100644 pkg/dem/InelastCohFrictMat.hpp
create mode 100644 pkg/dem/InelastCohFrictPM.cpp
create mode 100644 pkg/dem/InelastCohFrictPM.hpp
delete mode 100644 pkg/dem/InelastCohFrictPhys.cpp
delete mode 100644 pkg/dem/InelastCohFrictPhys.hpp
create mode 100644 pkg/dem/Integrator.cpp
create mode 100644 pkg/dem/Integrator.hpp
delete mode 100644 pkg/dem/Ip2_2xInelastCohFrictMat_InelastCohFrictPhys.cpp
delete mode 100644 pkg/dem/Ip2_2xInelastCohFrictMat_InelastCohFrictPhys.hpp
delete mode 100644 pkg/dem/Ip2_2xNormalInelasticMat_NormalInelasticityPhys.cpp
delete mode 100644 pkg/dem/Ip2_2xNormalInelasticMat_NormalInelasticityPhys.hpp
delete mode 100644 pkg/dem/Ip2_CohFrictMat_CohFrictMat_CohFrictPhys.cpp
delete mode 100644 pkg/dem/Ip2_CohFrictMat_CohFrictMat_CohFrictPhys.hpp
create mode 100644 pkg/dem/Ip2_ElastMat.cpp
create mode 100644 pkg/dem/Ip2_ElastMat.hpp
delete mode 100644 pkg/dem/Ip2_FrictMat_FrictMat_CapillaryPhys.cpp
delete mode 100644 pkg/dem/Ip2_FrictMat_FrictMat_CapillaryPhys.hpp
delete mode 100644 pkg/dem/Ip2_FrictMat_FrictMat_FrictPhys.cpp
delete mode 100644 pkg/dem/Ip2_FrictMat_FrictMat_FrictPhys.hpp
delete mode 100644 pkg/dem/Ip2_FrictMat_FrictMat_MindlinCapillaryPhys.cpp
delete mode 100644 pkg/dem/Ip2_FrictMat_FrictMat_MindlinCapillaryPhys.hpp
create mode 100644 pkg/dem/JointedCohesiveFrictionalPM.cpp
create mode 100644 pkg/dem/JointedCohesiveFrictionalPM.hpp
delete mode 100644 pkg/dem/KinemCNDEngine.cpp
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delete mode 100644 pkg/dem/KinemCNLEngine.cpp
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delete mode 100644 pkg/dem/KinemCNSEngine.cpp
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delete mode 100644 pkg/dem/KinemCTDEngine.cpp
delete mode 100644 pkg/dem/KinemCTDEngine.hpp
create mode 100644 pkg/dem/KinemC__Engine.cpp
create mode 100644 pkg/dem/KinemC__Engine.hpp
delete mode 100644 pkg/dem/Law2_ScGeom6D_InelastCohFrictPhys_CohesionMoment.cpp
delete mode 100644 pkg/dem/Law2_ScGeom6D_InelastCohFrictPhys_CohesionMoment.hpp
create mode 100644 pkg/dem/LudingPM.cpp
create mode 100644 pkg/dem/LudingPM.hpp
delete mode 100644 pkg/dem/NormalInelasticMat.cpp
delete mode 100644 pkg/dem/NormalInelasticMat.hpp
rename pkg/dem/{NormalInelasticityLaw.cpp => NormalInelasticPM.cpp} (68%)
create mode 100644 pkg/dem/NormalInelasticPM.hpp
delete mode 100644 pkg/dem/NormalInelasticityLaw.hpp
delete mode 100644 pkg/dem/NormalInelasticityPhys.cpp
delete mode 100644 pkg/dem/NormalInelasticityPhys.hpp
delete mode 100644 pkg/dem/ParticleSizeDistrbutionRPMRecorder.cpp
delete mode 100644 pkg/dem/ParticleSizeDistrbutionRPMRecorder.hpp
create mode 100644 pkg/dem/Polyhedra.cpp
create mode 100644 pkg/dem/Polyhedra.hpp
create mode 100644 pkg/dem/Polyhedra_Ig2.cpp
create mode 100644 pkg/dem/Polyhedra_Ig2.hpp
create mode 100644 pkg/dem/Polyhedra_splitter.cpp
create mode 100644 pkg/dem/Polyhedra_splitter.hpp
create mode 100644 pkg/dem/Polyhedra_support.cpp
delete mode 100644 pkg/dem/RockPM.cpp
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create mode 100644 pkg/dem/RungeKuttaCashKarp54Integrator.cpp
create mode 100644 pkg/dem/RungeKuttaCashKarp54Integrator.hpp
delete mode 100644 pkg/dem/Shop.cpp
create mode 100644 pkg/dem/Shop_01.cpp
create mode 100644 pkg/dem/Shop_02.cpp
create mode 100644 pkg/dem/ViscoelasticCapillarPM.cpp
create mode 100644 pkg/dem/ViscoelasticCapillarPM.hpp
create mode 100644 pkg/lbm/HydrodynamicsLawLBM.cpp
create mode 100644 pkg/lbm/HydrodynamicsLawLBM.hpp
create mode 100644 pkg/lbm/LBMbody.hpp
create mode 100644 pkg/lbm/LBMlink.hpp
create mode 100644 pkg/lbm/LBMnode.cpp
create mode 100644 pkg/lbm/LBMnode.hpp
create mode 100644 pkg/pfv/DFNFlow.cpp
create mode 100644 pkg/pfv/DummyFlowEngine.cpp
create mode 100644 pkg/pfv/FlowEngine.cpp
create mode 100644 pkg/pfv/FlowEngine.hpp
create mode 100644 pkg/pfv/FlowEngine.hpp.in
create mode 100644 pkg/pfv/FlowEngine.ipp.in
create mode 100644 pkg/pfv/PeriodicFlowEngine.cpp
create mode 100644 pkg/pfv/SoluteFlowEngine.cpp
create mode 100644 pkg/pfv/TwoPhaseFlowEngine.cpp
create mode 100644 pkg/pfv/TwoPhaseFlowEngine.hpp
create mode 100644 pkg/pfv/UnsaturatedEngine.cpp
create mode 100644 py/3rd-party/mtTkinter-0.4/gpl.txt
create mode 100644 py/3rd-party/mtTkinter-0.4/lgpl.txt
rename py/3rd-party/{mtTkinter-0.3 => mtTkinter-0.4}/mtTkinter.py (92%)
delete mode 100644 py/_eudoxos.cpp
create mode 100644 py/_polyhedra_utils.cpp
create mode 100644 py/_utils.hpp
delete mode 100644 py/eudoxos.py
delete mode 100644 py/manpage.py
create mode 100644 py/polyhedra_utils.py
create mode 100644 scripts/checks-and-tests/checks/DEM-PFV-check.py
create mode 100644 scripts/checks-and-tests/checks/checkClumpHopper.py
create mode 100644 scripts/checks-and-tests/checks/checkLiquidMigration.py
create mode 100644 scripts/checks-and-tests/checks/checkViscElEng.py
create mode 100644 scripts/checks-and-tests/checks/checkViscElPM.py
copy examples/WireMatPM/wiretensiltest.py => scripts/checks-and-tests/checks/checkWirePM.py (80%)
create mode 100644 scripts/checks-and-tests/checks/data/100spheres
mode change 100755 => 100644 scripts/erskine3.py
mode change 100755 => 100644 scripts/hackett.py
mode change 100755 => 100644 scripts/linkdeps.py
create mode 100644 scripts/ppa/.dput.cf
create mode 100644 scripts/ppa/.mini-dinstall.conf
create mode 100755 scripts/ppa/buildppa.py
create mode 100644 scripts/ppa/ppa.config
mode change 100755 => 100644 scripts/py2wiki.py
mode change 100755 => 100644 scripts/rename-class.py
create mode 100755 scripts/update_names.sh
delete mode 100644 yade.kdev4
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