[ismrmrd] annotated tag ismrmrd0.5 created (now 6e7b8cd)
Ghislain Vaillant
ghisvail-guest at moszumanska.debian.org
Wed Jan 14 20:00:48 UTC 2015
This is an automated email from the git hooks/post-receive script.
ghisvail-guest pushed a change to annotated tag ismrmrd0.5
in repository ismrmrd.
at 6e7b8cd (tag)
tagging 81c7bbb1bff62810535a183bf987240ec6a435c6 (commit)
replaces v0.5.2
tagged by Souheil Inati
on Fri Sep 19 09:29:58 2014 -0400
- Log -----------------------------------------------------------------
Pre ismrmrd 1.0 merge.
Dusan Puletic (2):
bug fixed: ismrmrd.cxx and ismrmrd.h get generated in xsd folder
Cmake module changed to simplify compiling on Windows
Ghislain Antony Vaillant (6):
add /usr/lib in list of hints for XSD stuff
fix spelling mistake picked up by lintian
add Numpy friendly accessor for getTraj
major rewrite of cmake files
add find mechanism for libismrmrd_xsd
add more constructors to MatrixSize and Limit
Ghislain Vaillant (1):
Fixes broken test for t_ndarraycontainer
Hui Xue (28):
fix a bug for multiple runs with the same group name
fix for more windows hdf5 linkage
change the xsd for dicom gtplus
add multiple measurements
merge from sf/development
change flipAngle to float
change the dependency measurement definition in schema
birthday goes back to xs:date
Merge branch 'development' of ssh://git.code.sf.net/p/ismrmrd/code into development_sf
put Boost_NO_BOOST_CMAKE into if(WIN32)
fix for windows compilation
change the ismrmrd for windows compilation
add end of scan
Merge remote-tracking branch 'sf/development' into hx_development_20140724_vatican
remove end_scan_data flag
fix a windows compilation error
Merge branch 'development_sf' into hx_development_20140724_vatican
fix windows compilation
merge from xml
merge from xml
fix linux linkage
Merge branch 'dev_xml_reorg' into hx_development_20140724_vatican
fix windows xsd warp
use HDF5_ROOT to find hdf5 in windows
use HDF5_ROOT to find hdf5 in windows, remove the HDF5 DEBUG linkdage
add const on some MetaContainer functions
merge from sf
fix the errors after merging
Joseph Naegele (6):
adding close() method to IsmrmrdDataset for Python bindings
adding crude Python example create/recon dataset scripts
allow IsmrmrdDataset to open HDF5 file read-only
adding ISMRMRD Image creation to Python example
enabling Boost_NO_BOOST_CMAKE option for all systems
fixing little bugs in xml/ and matlab/
Michael S. Hansen (20):
Change top level CMakeLists.txt to select Release mode build if build type not specified
Started working on XML library
Further work on XML library
More work on XML interface
Just working through the XML stuff
changes to XML functionality
Removed custem classes for strings and vectors
The new XML library can now deserialize and serialize
Added XML example with ALL fields set
Fixed minor bugs in XML library
Changed search order as suggested by Plutonium Heart
Added missing export file to CMakelists.txt install directive
Added ismrmrd_xml library to the find script
Added ISMRMRD meta data structures to xml library
Added missing headers
Started changes to ISMRMRD schema layout
Merge remote-tracking branch 'origin/development' into dev_xml_reorg
Added versioning including a check of the XML schema's SHA1 hash to help remember to increase minor version number when changing the schema.
Now comparing a cleaning (no linebreaks or whitespace) version of the schema when hashing
Merge branch 'development' of ssh://git.code.sf.net/p/ismrmrd/code into development
Souheil Inati (2):
Fixed the numbering on the AcquisitionFlags
Added java xmlhdr datatypes to the xmlhdr parser.
Thomas Sangild Sørensen (3):
Fixes for Windows compilation
Removed windows option that previously enforced unicode chars. Unicode encoding is not compatible with dcmtk.
Merge branch 'development' of ssh://git.code.sf.net/p/ismrmrd/code into development
xueh2 (4):
fix a python binding
add image attrib support
Merge branch 'development' into hx_development_gadgetron_2p5
fix a comment in ismrmrd_hdf5.h
-----------------------------------------------------------------------
This annotated tag includes the following new commits:
new 875d4b5 Initial Commit
new 2438c2a removed build directory
new 2512b37 Added build/ to gitignore
new 7b53618 Started work on HDF5 interface
new 3f78d47 Started implementation of HDF5 tools
new e5f3134 More work on HDF5 interface
new 51ab520 More work on HDF5 interface
new 8e37561 Improved HDF5 saving support
new 3fbc194 Added examples 2D/3D and spiral with Matlab code
new 8b4f677 First version of README file with basic documentation
new 6c86c88 Spell check on README
new 8cd0ccd Mods
new 6cc3a34 Changing packing to 2 bytes for ismrmrd.h
new 8cc3642 Changes to documentation
new 410d9ec Small typo correction
new 4c7dbb9 Added images to dataset and set up doxygen
new dec2ac5 Now supporting ISMRMRD Image format too
new a8ec56f Small fixes for compilation on Mac
new 006c7ce Added mac installation instructions
new 54c1697 Removed Boost version requirement
new 8451b59 Updated README.html
new 98bf0c2 Made some build script changes to make build more robust on all platforms
new 599d8f9 Fixed bug which caused problems when trying to write images to a non-existing file from multiple threads
new ebde178 Fixes to enable compile and linking on Windows
new 0f05e6f Merge branch 'master' of ssh://helix.nih.gov/home/hansenms/gitrepos/ismrmrd
new 29bbabd Added some help for findHDF5.cmake on Windows, which does not work well
new b8433d5 Started work on test applications
new 977a936 Complete first example of creating a dataset from scratch
new e22d7e1 Bug fix to data creation example
new b0af0af Small changes to build on Windows
new 8387b1f Added example reconstruction of test dataset
new 5fff7ee Small change to help cmake on Windows
new 00a0b99 Added Powershell Script for installing dependencies on Windows
new 74f34c4 Merge branch 'master' of ssh://helix.nih.gov/home/hansenms/gitrepos/ismrmrd
new 6a608c9 Initial work on the matlab wrappers.
new ff558d5 Merge branch 'master' of ssh://137.187.134.61/home/gitrepos/ismrmrd
new 3cc712d Updated documentation and removed main.cpp, which wasn't doing much
new 1149c06 Merge branch 'master' of ssh://137.187.134.61/home/gitrepos/ismrmrd
new b2de938 Most of the data structures are complete. Starting to make progress on the HDF5 low level read/write routines.
new 8056299 Merge branch 'master' of ssh://137.187.134.61/home/gitrepos/ismrmrd
new 39bb838 Matlab code that would have worked (maybe) if only we could have used variable length arrays of compound types.
new e96c3d5 MAJOR LAYOUT CHANGE: Acquisition data now stored as variable length array of FLOAT and not as a compound type. This change was made to improve interoperability with Matlab, etc.
new 03d0770 Fixed bug introduced in FindXSD.cmake on Linux/Mac
new f36b114 Starting conversion from hdf5 struct to Acquisition object
new 9b382c2 Correct Matlab examples to reflect new storage convention
new d72c928 continuing to work on matlab implementation
new 150ae27 Merge branch 'master' of ssh://137.187.134.61/home/gitrepos/ismrmrd
new c5f569d Split into two libraries, one for HDF5 RW and one for the XML XSD stuff.
new 1a40aa0 Merge branch 'master' of ssh://137.187.134.61/home/gitrepos/ismrmrd
new 42b208c Small fix to Windows Exports
new 6980aba Added first draft for a parallel imaging section in the schema defintion
new 478467e Updates to documentation
new ef7e6a2 Working Java xml handling for Matlab. Examples in progress.
new 5d425b8 Working on the matlab
new fd4bd73 Merge branch 'master' of ssh://137.187.134.61/home/gitrepos/ismrmrd
new 000739f Modified cmake file to put matlab m files in the right place.
new 6202157 Added functions to bind xml
new 04f0fc2 Merge branch 'master' of ssh://137.187.134.61/home/gitrepos/ismrmrd
new 0736eb8 Inlined all get data type functions to make it easier to include in multiple C++ files
new 9461b76 Added optional DICOM parameters to schema.
new fa62f54 'const' safties in NDArrayContainer methods and non-singleton dimensions
new a3742bb Mod to gitignore
new 7570cac Merge branch 'master' of ssh://137.187.134.61/home/gitrepos/ismrmrd
new a78fb88 Merge branch 'master' of ssh://git.code.sf.net/p/ismrmrd/code
new 223a6d1 moved non-DICOM specific elements to the general header.
new 2f13721 working on test example.
new 4d97da4 Merge branch 'master' of ssh://137.187.134.61/home/gitrepos/ismrmrd
new c19cecc Moved old examples into deprecated. Will slowly pull back the relevant bits.
new d4bc435 Moved c++ example and create standalone build cmake.
new d108000 working on matlab example
new 555be4b use the precompiled hdf5 for windows
new f2145da Merge branch 'master' of vatican.nhlbi.nih.gov:/home/gitrepos/ismrmrd
new c85a564 working on matlab interface, xmlheader class
new 5c42062 Merge branch 'master' of ssh://137.187.134.61/home/gitrepos/ismrmrd
new f95a997 Replaced vector with valarray on NDArrayContainer
new 9017825 Replaced vector with valarray on NDArrayContainer
new 182c53a Replaced vector with valarray on NDArrayContainer
new 899569e Replaced vector with valarray on NDArrayContainer
new a5434b6 Merge branch 'master' of ssh://git.code.sf.net/p/ismrmrd/code
new 5d4f482 Removed std::valarray assignments. They seem to be causing problems for GCC/G++ VERSION < 4.6
new 59bf2be Merge branch 'master' of vatican.nhlbi.nih.gov:/home/gitrepos/ismrmrd
new d623407 Bringing back xml2struct.m for the simple matlab read examples. Added some documentation about generating the javadoc for the xml header api.
new 97ce954 Updated documentation and moved matlab examples (temporarily) back to the original folder while new examples are being made
new 18b089f valarray / ndarraycontainer inheritance ... seems to work. consistency checks missing.
new 1d3da9c kv_storage initial push to integrate more inheritance and checks
new d8b3f80 Missing read speed test from Michael
new 779bbae Missing read speed test from Michael
new d812d5d Missing read speed test from Michael
new e9a9c9a Image test
new 276f103 Added initialSeriesNumber to measurementInfo in the schema.
new 1a2e67b fix hdf5 cmake in windows
new e3d9db2 Encapsulation of Acquisition and Image
new 0c660f8 Erased all traces of quaternions. Replaced with 3 direction cosines.
new d406bdc rename *_cosines to *_dir and add quaternion helper functions
new 6bbcd34 Merge branch 'master' into dir_cosines
new 69b0f7b semantics
new 10b4ce2 inlined the quaternion to direction functions. `
new cbb1b25 fixed ismrmrd.h to compile with a C compiler.
new b0179ed t_cquaternions needs to be link with libm.
new e85c48a make the new ismrmrd compiled in windows
new 12afcff Fixed a bug that prevented trajectrory data arrays from getting resized when setting number of trajectory dimensions
new 3aa9c83 fix a warning on 1<<mask_bit
new 2748af4 Added some names and emails to header
new a999126 Removed a comment
new e427338 More work on comments
new 6aad946 Small change
new b4d0b3d Some formatting
new 3c7ae14 Some formatting
new 5fd0853 Corrected some indentations
new e588f87 improving classes in Matlab ISMRMRD package
new 613f6ce added base64 string userParameter to ISMRMRD schema.
new 0064539 Formatting
new 391179b Formatting
new 87417bb added initial version of SWIG Python bindings
new fa9bc6c working on Python bindings
new 838e295 more work on Python and Java bindings
new 173708f more progress on Java bindings. working getData()
new cb74efa added example code for java and python bindings
new 5567943 Merge branch 'base64param' into development
new 58ea6e0 Merge branch 'development' of vatican.nhlbi.nih.gov:/home/gitrepos/ismrmrd into development
new 1e49962 Added first parts of utility functions for generating shepp-logan phantom datasets
new 643bf27 Further improvements to shepp-logan phantom generator
new 3633b34 Merge branch 'development' of vatican.nhlbi.nih.gov:/home/gitrepos/ismrmrd into development
new cbea17a Working version of SWIG Java bindings. Still missing append functions, but a pretty complete working copy so far.
new e03d11b Merged swig java wrappers into development branch. i.e. Merge remote-tracking branch 'origin/development' into development
new 2ce8aee added custom command to make jar for java bindings
new e417bab Merge branch 'development' of github.com:nih-fmrif/ismrmrd into development
new 40d3039 added install target for java jar and library.
new 5e1fe48 Improvments to the java bindings. Now builds the jaxb stuff for the xmlheader. Creates a javadoc. Still working on the automatic loader for simplified matlab use. Still no Append methods.
new df16c08 adding JNILibLoader and Java XML header marshaller.
new ae30556 Put in the append functions stubs. Not working quite right, but the interface is correct.
new 52adfaf Created a VERY simple example java program.
new e3f5817 Fixed error in javadoc building.
new 4d5b6b0 added JAXB marshalling function to java bindings.
new 9ba431c Changed interface to the writeHeader function to make the input string a const.
new 79ef28a Changed the build procedure for the shepp logan phantom generator to link statically to the XSD files to avoid clashes with boost program options on Windows
new 6824922 Removed all of the HDF5 stuff from the matlab interface. The interface is now just contains what is need for hanling AcquisitionHeader and ImageHeader. The Java bindings are much better.
new 6859af4 Reorganizing matlab interface. Got rid of native hdf5 stuff in preparation for migrating to a thin wrapper around the java stuff.
new aebe640 Merge remote-tracking branch 'vatican/development' into development
new 0f8a011 changing bindings to build conditionally
new 50b8487 Do no create the ismrmrd_xsd library. On Windows it would export symbols from std:: which caused duplicate defined symbols when linking different libraries together. Instead we now autogenerate ismrmrd.hxx and ismrmrd.cxx in the schema folder.
new 55e061b Resolved merge conflicts for Windows adaptions
new 5b64f36 copied Gadgetron FindIsmrmrd.cmake to Ismrmrd.
new 5ce28a3 finishing up Python bindings.
new c2986c9 Added ismrmrd.py to install list for python bindings.
new 3c3eec7 added additional include directory for java bindings
new 8c92681 More CODFile
new ac872de Added C++ multi slice recon
new af48279 Merge branch 'development' of ssh://git.code.sf.net/p/ismrmrd/code into development
new d07ab1c Removed files replaced
new bae7652 Added License
new e1ea9a6 Merge branch 'master' of ssh://git.code.sf.net/p/ismrmrd/code
new 821a460 Updated readme file
new 2ce0b89 making java bindings build standalone class files
new 32e5d8b Merge branch 'development' of vatican.nhlbi.nih.gov:/home/gitrepos/ismrmrd into development
new 05ae22a Made changes to Java interface to expose getTraj and setTraj appropriately
new 4e6c6b9 giving all complex types global names in schema
new 31f0c7b Merge branch 'development' of github.com:nih-fmrif/ismrmrd into development
new 118018b Changes to schema and python bindings to fix xml header and readArray.
new 6cd599a using FindJNI for Java bindings.
new 7c73447 heavily cleansing Python binding/API
new c3fe968 first checkin on local branch
new bf7a472 adding FindNumPy.cmake for Python bindings.
new 96742ee forcing Fortran-style order in NumPy array (bindings)
new 57f173c updating FindXSD to respect find_package args.
new 36a6247 Merge remote-tracking branch 'origin/development' into hx_development
new 1c1dd3e add more data types
new f7b316d changing binding install directories to language name
new 0f7dd64 updating Java XML bindings for newest schema version.
new 91e52e7 working on Matlab + ISMRMRD + HDF5 interface
new 7e5011b Fixed size of physio time stamps.
new caf66d1 Reverted size of physiology_time_stamps change for now. Deferred to a mojore version change.
new 401fa57 adding working example for Matlab API
new 29434c9 moving Java XML API to the matlab package
new 4daeaf6 Continuing to work on matlab interace.
new 1454f25 Install a copy of the jar file inside the matlab class. Matlab api fix so that an error isreturned if the data does not exist yet.
new fb8e97f Merge branch 'development' of vatican.nhlbi.nih.gov:/home/gitrepos/ismrmrd into development
new 3e3bf48 Fixed bug is matlab api, acquisition flagbit.
new 933ab5d Changed matlab api so that readAcquisition sets the data shape to match what is given in the corresponding header.
new 0bb6439 Prepping for new matlab API.
new 54f99e1 New matlab API. Acquisitions are working. Lots more to do.
new d883988 Slowly migrating back to a (faster) matlab class.
new f49e7e4 New matlab class style interface working for acquisitions.
new c8a9671 Can now properly append acquisitions.
new 52aa30e Started to migrage ImageHeader to new style matlab api.
new dc8e0e3 Starting to fix bugs in ImageHeader in matlab api.
new bb0348c Merge branch 'development' into development_merge_hx
new f8d3082 Fixed python bindings to compile cleanly with NumPy 1.7 API
new 9c5fbca Merge branch 'development' of vatican.nhlbi.nih.gov:/home/gitrepos/ismrmrd into development
new a203d7d A simple matlab reconstruction example.
new 4fc2cd1 Fixed a few bugs in the matlab interface and add a recon example.
new 4bc1b14 adding Java XML header API docs to matlab install destination
new 3e9b42b fixing build dependencies for Java API/docs
new a082f58 Merge branch 'development_merge_hx' of vatican.nhlbi.nih.gov:/home/gitrepos/ismrmrd into development
new 1e307c1 revert to Java .jar depending on native Java library.
new 45f2631 fix #8: cmake now autodetects java include
new 4237508 Merged with Ghislain's changes and the changes on vatican
new 6de1ac7 fix windows hdf5 linkage for latest hdf5 package
new b250ecb Merge branch 'development' of vatican.nhlbi.nih.gov:/home/gitrepos/ismrmrd into development
new c984154 Fixed matlab generated files to have the same layout as the ones generated by the C++ code.
new e906c29 Changed byte packing and packing to use uint8.
new 37ea9b3 Fixed number of physio time stamps in byte array conversion.
new a59803e Fixed byte array conversion for ImageHeader
new e6ddcc1 Added type and size checking to the matlab API for acquisition headers.
new 6ec4fcd Add type checking to matlab ImageHeader
new 5b344f3 fix a python binding
new 6e07c3a restore compatibility with numpy 1.6
new 02cc2f2 Revert "restore compatibility with numpy 1.6"
new ca9e3ca Restoring compatibility with NumPy 1.6 again
new 824dca6 removing NumPy version check in bindings CMakeLists
new cfe48a4 add image attrib support
new 11bfd85 Merge branch 'development' into hx_development_gadgetron_2p5
new 33d9f2d fix a bug for multiple runs with the same group name
new 11d24a7 Fixes for Windows compilation
new f039992 fix for more windows hdf5 linkage
new 81584a3 Removed windows option that previously enforced unicode chars. Unicode encoding is not compatible with dcmtk.
new 074dbc8 Merge branch 'development' of ssh://git.code.sf.net/p/ismrmrd/code into development
new f0c4bf4 change the xsd for dicom gtplus
new fa078a6 Fixed the numbering on the AcquisitionFlags
new a5f4304 add multiple measurements
new 0b420b6 merge from sf/development
new b3e9497 change flipAngle to float
new 207597c change the dependency measurement definition in schema
new 3c02cb4 birthday goes back to xs:date
new 688fb6a adding close() method to IsmrmrdDataset for Python bindings
new db681da adding crude Python example create/recon dataset scripts
new a0b7bac allow IsmrmrdDataset to open HDF5 file read-only
new 42de178 Merge branch 'development' of ssh://git.code.sf.net/p/ismrmrd/code into development_sf
new c8b191f fix a comment in ismrmrd_hdf5.h
new 7057210 add /usr/lib in list of hints for XSD stuff
new 0ff5646 put Boost_NO_BOOST_CMAKE into if(WIN32)
new d20f85d Fixes broken test for t_ndarraycontainer
new 331d4e1 fix spelling mistake picked up by lintian
new 6a40789 adding ISMRMRD Image creation to Python example
new 876e6ec add Numpy friendly accessor for getTraj
new eabc567 major rewrite of cmake files
new ac5a67a add find mechanism for libismrmrd_xsd
new ced475e fix for windows compilation
new 9601fa8 Change top level CMakeLists.txt to select Release mode build if build type not specified
new 490c2b9 enabling Boost_NO_BOOST_CMAKE option for all systems
new 038a1cc change the ismrmrd for windows compilation
new 9200ebf Added java xmlhdr datatypes to the xmlhdr parser.
new 7a34e3e Started working on XML library
new 1da272e Further work on XML library
new b641ca9 More work on XML interface
new a2978a4 Just working through the XML stuff
new bfa2d5c add end of scan
new 0d8fa18 Merge remote-tracking branch 'sf/development' into hx_development_20140724_vatican
new 36b4044 remove end_scan_data flag
new 74ddb5a changes to XML functionality
new 79a0ff6 Removed custem classes for strings and vectors
new 2f3e02a The new XML library can now deserialize and serialize
new fc3f471 Added XML example with ALL fields set
new 3546d98 Fixed minor bugs in XML library
new 8ddf246 Changed search order as suggested by Plutonium Heart
new 255fa72 Added missing export file to CMakelists.txt install directive
new 0c2cc19 Added ismrmrd_xml library to the find script
new 6111a77 fix a windows compilation error
new fe61505 Merge branch 'development_sf' into hx_development_20140724_vatican
new aabea9a Added ISMRMRD meta data structures to xml library
new 09892ab Added missing headers
new 67936ae Started changes to ISMRMRD schema layout
new 0eb8892 fixing little bugs in xml/ and matlab/
new 67e4cdd fix windows compilation
new 77e9ae9 merge from xml
new a76dfb6 merge from xml
new 7441550 fix linux linkage
new a7d0b4c Merge branch 'dev_xml_reorg' into hx_development_20140724_vatican
new 16c47a4 fix windows xsd warp
new d49b948 bug fixed: ismrmrd.cxx and ismrmrd.h get generated in xsd folder
new 339d8dd use HDF5_ROOT to find hdf5 in windows
new 522f681 use HDF5_ROOT to find hdf5 in windows, remove the HDF5 DEBUG linkdage
new 698dadc Merge remote-tracking branch 'origin/development' into dev_xml_reorg
new c4f450f Added versioning including a check of the XML schema's SHA1 hash to help remember to increase minor version number when changing the schema.
new b102f84 add more constructors to MatrixSize and Limit
new 709d79b Now comparing a cleaning (no linebreaks or whitespace) version of the schema when hashing
new a8e97fc Merge branch 'development' of ssh://git.code.sf.net/p/ismrmrd/code into development
new 80819d9 add const on some MetaContainer functions
new c2332ae merge from sf
new ca42e3a fix the errors after merging
new 81c7bbb Cmake module changed to simplify compiling on Windows
The 281 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails. The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.
--
Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-science/packages/ismrmrd.git
More information about the debian-science-commits
mailing list