[ismrmrd] annotated tag v1.1.0.beta.1 created (now 5e70451)
Ghislain Vaillant
ghisvail-guest at moszumanska.debian.org
Wed Jan 14 20:01:55 UTC 2015
This is an automated email from the git hooks/post-receive script.
ghisvail-guest pushed a change to annotated tag v1.1.0.beta.1
in repository ismrmrd.
at 5e70451 (tag)
tagging 33b5c7a49a27451389f4c3d3776c0f8a9b41da80 (commit)
replaces ismrmrd0.5
tagged by Souheil Inati
on Thu Nov 6 13:05:23 2014 -0500
- Log -----------------------------------------------------------------
Version 1.1.0 candidate 1
David C Hansen (5):
Added data serialization to the Matalb code
Added xml validation to Matlab. Fixed a bug in the produced XML document as a consequence
Fixed Matlab Imageheader to match the C ImageHeader
Removed spacing the Matlab ImageHeader
Fixed a few bugs in the Matlab xml serializer
Dusan Puletic (6):
Modified cmake FindFFTW
Making the c code C89 because MS is lame.
Fixing more windows woes.
Fixed declaration for c89 style Win compiler
MH:CMakeLists file fixed so code compiles on Windows
Windows bug fixed
Ghislain Antony Vaillant (18):
cmake: removal of forced prefix
cmake: add minor version number to soversion to produce the right symlink
improve memory safety in cleanup / free methods
harden checks for valid pointers
harden checks for valid pointers
add support for cpack
don't track autogenerated file
add support for GnuInstallDirs install tree
default to GnuInstallDirs mode
add paths for bindings (some are temporary)
add support for linking with system pugixml
utilities: check for both FFTW3 and Boost PO
ISMRMRD_EncodingCounters -> EncodingCounters
adapt example Python script to new Python API
Merge branch 'development' of ssh://git.code.sf.net/p/ismrmrd/code into development
merge single diff of pyismrmrd as of commit time
merge from pyismrmrd:
update dataset creation Py script
Hui Xue (15):
add windows packaging and windows install dependencies
merge from sf/development
win install hdf5 dependencies
add cpack install directory
add cpack nsis install name
use cpack packaging is correct
Merge remote-tracking branch 'origin/development' into packaging-cpack
only use cpack packging prefix in linux
use cpack packaging only in linux
merge from development
refine the packaging
Merge remote-tracking branch 'origin/development' into packaging-cpack
add <cstring> to ismrmrd_phantom.cpp
Merge remote-tracking branch 'sf/development' into packaging-cpack
Merge branch 'packaging-cpack' of vatican.nhlbi.nih.gov:/home/gitrepos/ismrmrd into packaging-cpack
Joseph Naegele (17):
fixing CMakeLists for ISMRMRD 1.0 C-API.
adding an include for compilation via GCC 4.3
reorganizing Doxygen documentation
finishing C-portion of error handling stack
"fix" my reverted commit to appease C89 Windows compiler
adding exception throws using error stack messages
fixing find_library line in FindIsmrmrd.cmake
removing usage of strdup from dataset.c (my fault)
first steps in pushing HDF5 errors onto ISMRMRD error stack
adding more HDF5 error handling in dataset.c
eliminating duplicate code in append_element
adding a read_element function for datasets
more fixes for Windows C89 limitations
initial commit of cython bindings
adding Dataset to python bindings
adding boilerplate Cython interface to libismrmrd
updating SWIG build to use C-API only
Michael S. Hansen (6):
Completed C style type creation
added last types for using C-style api
Merge branch '2.0' of ssh://git.code.sf.net/p/ismrmrd/code into 2.0
Added first simple application to display version info
Changed the SHA1 hash variable to be a define to pevent problems from multiple includes
Merge branch 'development' of ssh://git.code.sf.net/p/ismrmrd/code into HEAD
Souheil Inati (110):
Added todo file.
Starting to flesh out C interface.
Basic C program to test the C API.
Changed function name capitalization.
Added namespace-like protection around C interface. Beginning to build up C++ interface.
Added some Image functionality.
More additions to the C++ classes.
Stubbed out dataset C header.
starting to work on the file stuff
HDF5 group creation working.
Can read and write XML header.
Added C error handling functionality.
Get number of acquisitions works
Can now append acquisitions
Can now read acquisition.
minor edits.
Merged new XML API
Merged into one library and cleaned up some CMake files.
Removing old hdf5 related stuff. Removed xml specific windows exports definitions.
Removed unused cmake files.
Reorganized examples. All examples should be standalone.
Added Cpp Dataset type. Can now read/write XML header and Acquisitions.
Worked on ndarray
Add compilers flags for GNU and fixed an include
Fixed memory allocation error in ndarray.
Fixed nearly all GCC compiler warnings. Switched to c++0x standard.
Cleaning up compiler issues on older versions of GCC.
Added compiler flag to force HDF5 macros to use the HDF1.8 API.
Forcing HDF calls to adhere to the 1.8 syntax.
Replaced H5Tarray_create macro with H5Tarray_create2 function call.
Changed C++ API. Headers are now structs with just a few methods.
Fixed typo in ImageTypes
Changed the logic of the C++ interface to allow for casting between ISMRMRD_Acquisition and Acquisition.
Switched C++ NDArray to be castable to C version.
Added convenience class FlagBit.
Changed implementation of C++ ImageHeader and Image to be castable to and from C version.
Added C++ readAcquisition which takes an Acquisition pointer in/out
Added Image and NDArray HDF5 datatypes and data type functions.
Added function to append a vector in general.
More work on appending.
Can now append images and ndarrays in array mode.
Added image data size method.
Working on C++ interface for strings.
Fixed C++ api to only use references to prevent unecessary data copies.
Squashed commit of the following:
Merged from development
Fixed memory allocation for trajectory in C++ wrapper.
Merged G's cmake changes. Will undo later.
Reorganized library layout for standardizing install and header naming ismrmrd/meta.h,etc..
cleaned up findismrmrd
Defining some types for windows compilers.
More header fixes for windows
Attempt at fixing ISMRMRD_THROW macro on windows.
Fixed append image and append array to reverse the labels in the hdf5 array to conform with the C-style hdf5 labeling. dimensions are N x CHA x Z x Y x X.
Revert "add paths for bindings (some are temporary)"
Revert "default to GnuInstallDirs mode"
Revert "add support for GnuInstallDirs install tree"
Added explicit numeric values to flags.
Added more explicit numbers to ismrmd header to simplify checking on other platforms.
Starting to work on bringing matlab api to version 1.0 specs.
Removed unneeded xml subdirectory
Added export statements to the C-API.
Changed C code error checking (no slient fails) and put return codes for most functions.
Working on shepp-logan phantom utility.
Merge
Utility to generate Cartesian Shepp-Logan phantom dataset working again.
working on ndarray c++ api and utilities.
Added a couple of helper methods for sizes. Fixed some loop counters to use unsigned ints.
Merge branch 'development' of ssh://git.code.sf.net/p/ismrmrd/code into development
Fixed typo in type declaration
Added export statements for Windows
Trying to fix windows export issue.
Fixed memcpy error in c-api. Removed extra output from cartesian phantom utility.
Removed Java bindings.
Merged Joe's error handling code.
Revert "finishing C-portion of error handling stack"
Fixed recon2d example utility.
Working on templating images.
WIP C++ API changes.
Merged in exception throwing.
Finishing up making Image templated.
Added version number to the schema and to the xml header.
Modified creation and installation of version.h. Improved XMLHDR versioning.
Fixed dataset methods to return void and only throw exceptions. Removed unused c++ examples. Added c example to the build.
Got rid of some compiler warnings.
Removed obsolete tests directory.
Removed (disabled) tests directory list from the main CMakeLists file.
Disabled c example. Not compatible with stupid windows non-C99 compiler.
Made c bits c89 compatible for windows visual studio compatibility.
Trying to fix plain c example on windows.
Working on making matlab api compatible with v1.0
Matlab api - suppress output in xml serialize.
Working matlab generate data set example.
Merge branch 'development' of ssh://git.code.sf.net/p/ismrmrd/code into development
First crappy version of matlab xml deserialize function.
Cleaning out old python swig bindings.
Removed references to block mode. Decided to not implement ragged images/arrays.
Continuing to stub out matlab deserialize function.
Fixed Matlab xmlhdr deserialize. Simple Matlab examples are now working again.
Revived Michael's matlab spiral recon example
Renamed matlab spiral recon example
Matlab simple spiral example works with the new api. Modified matlab trajectory (fixed shape).
Make sure that AcquisitionHeader blocks have the proper shape.
Fixed reading images and arrays. Fixed bug in python binding.
Added channel mask stuff to c-api.
C++ channel mask.
Python opens dataset at creation
tweaked python examples to have files opened by default.
Work in progress - switching acq.data etc. accessor.
tweak to the indexing
-----------------------------------------------------------------------
This annotated tag includes the following new commits:
new 875d4b5 Initial Commit
new 2438c2a removed build directory
new 2512b37 Added build/ to gitignore
new 7b53618 Started work on HDF5 interface
new 3f78d47 Started implementation of HDF5 tools
new e5f3134 More work on HDF5 interface
new 51ab520 More work on HDF5 interface
new 8e37561 Improved HDF5 saving support
new 3fbc194 Added examples 2D/3D and spiral with Matlab code
new 8b4f677 First version of README file with basic documentation
new 6c86c88 Spell check on README
new 8cd0ccd Mods
new 6cc3a34 Changing packing to 2 bytes for ismrmrd.h
new 8cc3642 Changes to documentation
new 410d9ec Small typo correction
new 4c7dbb9 Added images to dataset and set up doxygen
new dec2ac5 Now supporting ISMRMRD Image format too
new a8ec56f Small fixes for compilation on Mac
new 006c7ce Added mac installation instructions
new 54c1697 Removed Boost version requirement
new 8451b59 Updated README.html
new 98bf0c2 Made some build script changes to make build more robust on all platforms
new 599d8f9 Fixed bug which caused problems when trying to write images to a non-existing file from multiple threads
new ebde178 Fixes to enable compile and linking on Windows
new 0f05e6f Merge branch 'master' of ssh://helix.nih.gov/home/hansenms/gitrepos/ismrmrd
new 29bbabd Added some help for findHDF5.cmake on Windows, which does not work well
new b8433d5 Started work on test applications
new 977a936 Complete first example of creating a dataset from scratch
new e22d7e1 Bug fix to data creation example
new b0af0af Small changes to build on Windows
new 8387b1f Added example reconstruction of test dataset
new 5fff7ee Small change to help cmake on Windows
new 00a0b99 Added Powershell Script for installing dependencies on Windows
new 74f34c4 Merge branch 'master' of ssh://helix.nih.gov/home/hansenms/gitrepos/ismrmrd
new 6a608c9 Initial work on the matlab wrappers.
new ff558d5 Merge branch 'master' of ssh://137.187.134.61/home/gitrepos/ismrmrd
new 3cc712d Updated documentation and removed main.cpp, which wasn't doing much
new 1149c06 Merge branch 'master' of ssh://137.187.134.61/home/gitrepos/ismrmrd
new b2de938 Most of the data structures are complete. Starting to make progress on the HDF5 low level read/write routines.
new 8056299 Merge branch 'master' of ssh://137.187.134.61/home/gitrepos/ismrmrd
new 39bb838 Matlab code that would have worked (maybe) if only we could have used variable length arrays of compound types.
new e96c3d5 MAJOR LAYOUT CHANGE: Acquisition data now stored as variable length array of FLOAT and not as a compound type. This change was made to improve interoperability with Matlab, etc.
new 03d0770 Fixed bug introduced in FindXSD.cmake on Linux/Mac
new f36b114 Starting conversion from hdf5 struct to Acquisition object
new 9b382c2 Correct Matlab examples to reflect new storage convention
new d72c928 continuing to work on matlab implementation
new 150ae27 Merge branch 'master' of ssh://137.187.134.61/home/gitrepos/ismrmrd
new c5f569d Split into two libraries, one for HDF5 RW and one for the XML XSD stuff.
new 1a40aa0 Merge branch 'master' of ssh://137.187.134.61/home/gitrepos/ismrmrd
new 42b208c Small fix to Windows Exports
new 6980aba Added first draft for a parallel imaging section in the schema defintion
new 478467e Updates to documentation
new ef7e6a2 Working Java xml handling for Matlab. Examples in progress.
new 5d425b8 Working on the matlab
new fd4bd73 Merge branch 'master' of ssh://137.187.134.61/home/gitrepos/ismrmrd
new 000739f Modified cmake file to put matlab m files in the right place.
new 6202157 Added functions to bind xml
new 04f0fc2 Merge branch 'master' of ssh://137.187.134.61/home/gitrepos/ismrmrd
new 0736eb8 Inlined all get data type functions to make it easier to include in multiple C++ files
new 9461b76 Added optional DICOM parameters to schema.
new fa62f54 'const' safties in NDArrayContainer methods and non-singleton dimensions
new a3742bb Mod to gitignore
new 7570cac Merge branch 'master' of ssh://137.187.134.61/home/gitrepos/ismrmrd
new a78fb88 Merge branch 'master' of ssh://git.code.sf.net/p/ismrmrd/code
new 223a6d1 moved non-DICOM specific elements to the general header.
new 2f13721 working on test example.
new 4d97da4 Merge branch 'master' of ssh://137.187.134.61/home/gitrepos/ismrmrd
new c19cecc Moved old examples into deprecated. Will slowly pull back the relevant bits.
new d4bc435 Moved c++ example and create standalone build cmake.
new d108000 working on matlab example
new 555be4b use the precompiled hdf5 for windows
new f2145da Merge branch 'master' of vatican.nhlbi.nih.gov:/home/gitrepos/ismrmrd
new c85a564 working on matlab interface, xmlheader class
new 5c42062 Merge branch 'master' of ssh://137.187.134.61/home/gitrepos/ismrmrd
new f95a997 Replaced vector with valarray on NDArrayContainer
new 9017825 Replaced vector with valarray on NDArrayContainer
new 182c53a Replaced vector with valarray on NDArrayContainer
new 899569e Replaced vector with valarray on NDArrayContainer
new a5434b6 Merge branch 'master' of ssh://git.code.sf.net/p/ismrmrd/code
new 5d4f482 Removed std::valarray assignments. They seem to be causing problems for GCC/G++ VERSION < 4.6
new 59bf2be Merge branch 'master' of vatican.nhlbi.nih.gov:/home/gitrepos/ismrmrd
new d623407 Bringing back xml2struct.m for the simple matlab read examples. Added some documentation about generating the javadoc for the xml header api.
new 97ce954 Updated documentation and moved matlab examples (temporarily) back to the original folder while new examples are being made
new 18b089f valarray / ndarraycontainer inheritance ... seems to work. consistency checks missing.
new 1d3da9c kv_storage initial push to integrate more inheritance and checks
new d8b3f80 Missing read speed test from Michael
new 779bbae Missing read speed test from Michael
new d812d5d Missing read speed test from Michael
new e9a9c9a Image test
new 276f103 Added initialSeriesNumber to measurementInfo in the schema.
new 1a2e67b fix hdf5 cmake in windows
new e3d9db2 Encapsulation of Acquisition and Image
new 0c660f8 Erased all traces of quaternions. Replaced with 3 direction cosines.
new d406bdc rename *_cosines to *_dir and add quaternion helper functions
new 6bbcd34 Merge branch 'master' into dir_cosines
new 69b0f7b semantics
new 10b4ce2 inlined the quaternion to direction functions. `
new cbb1b25 fixed ismrmrd.h to compile with a C compiler.
new b0179ed t_cquaternions needs to be link with libm.
new e85c48a make the new ismrmrd compiled in windows
new 12afcff Fixed a bug that prevented trajectrory data arrays from getting resized when setting number of trajectory dimensions
new 3aa9c83 fix a warning on 1<<mask_bit
new 2748af4 Added some names and emails to header
new a999126 Removed a comment
new e427338 More work on comments
new 6aad946 Small change
new b4d0b3d Some formatting
new 3c7ae14 Some formatting
new 5fd0853 Corrected some indentations
new e588f87 improving classes in Matlab ISMRMRD package
new 613f6ce added base64 string userParameter to ISMRMRD schema.
new 0064539 Formatting
new 391179b Formatting
new 87417bb added initial version of SWIG Python bindings
new fa9bc6c working on Python bindings
new 838e295 more work on Python and Java bindings
new 173708f more progress on Java bindings. working getData()
new cb74efa added example code for java and python bindings
new 5567943 Merge branch 'base64param' into development
new 58ea6e0 Merge branch 'development' of vatican.nhlbi.nih.gov:/home/gitrepos/ismrmrd into development
new 1e49962 Added first parts of utility functions for generating shepp-logan phantom datasets
new 643bf27 Further improvements to shepp-logan phantom generator
new 3633b34 Merge branch 'development' of vatican.nhlbi.nih.gov:/home/gitrepos/ismrmrd into development
new cbea17a Working version of SWIG Java bindings. Still missing append functions, but a pretty complete working copy so far.
new e03d11b Merged swig java wrappers into development branch. i.e. Merge remote-tracking branch 'origin/development' into development
new 2ce8aee added custom command to make jar for java bindings
new e417bab Merge branch 'development' of github.com:nih-fmrif/ismrmrd into development
new 40d3039 added install target for java jar and library.
new 5e1fe48 Improvments to the java bindings. Now builds the jaxb stuff for the xmlheader. Creates a javadoc. Still working on the automatic loader for simplified matlab use. Still no Append methods.
new df16c08 adding JNILibLoader and Java XML header marshaller.
new ae30556 Put in the append functions stubs. Not working quite right, but the interface is correct.
new 52adfaf Created a VERY simple example java program.
new e3f5817 Fixed error in javadoc building.
new 4d5b6b0 added JAXB marshalling function to java bindings.
new 9ba431c Changed interface to the writeHeader function to make the input string a const.
new 79ef28a Changed the build procedure for the shepp logan phantom generator to link statically to the XSD files to avoid clashes with boost program options on Windows
new 6824922 Removed all of the HDF5 stuff from the matlab interface. The interface is now just contains what is need for hanling AcquisitionHeader and ImageHeader. The Java bindings are much better.
new 6859af4 Reorganizing matlab interface. Got rid of native hdf5 stuff in preparation for migrating to a thin wrapper around the java stuff.
new aebe640 Merge remote-tracking branch 'vatican/development' into development
new 0f8a011 changing bindings to build conditionally
new 50b8487 Do no create the ismrmrd_xsd library. On Windows it would export symbols from std:: which caused duplicate defined symbols when linking different libraries together. Instead we now autogenerate ismrmrd.hxx and ismrmrd.cxx in the schema folder.
new 55e061b Resolved merge conflicts for Windows adaptions
new 5b64f36 copied Gadgetron FindIsmrmrd.cmake to Ismrmrd.
new 5ce28a3 finishing up Python bindings.
new c2986c9 Added ismrmrd.py to install list for python bindings.
new 3c3eec7 added additional include directory for java bindings
new 8c92681 More CODFile
new ac872de Added C++ multi slice recon
new af48279 Merge branch 'development' of ssh://git.code.sf.net/p/ismrmrd/code into development
new d07ab1c Removed files replaced
new bae7652 Added License
new e1ea9a6 Merge branch 'master' of ssh://git.code.sf.net/p/ismrmrd/code
new 821a460 Updated readme file
new 2ce0b89 making java bindings build standalone class files
new 32e5d8b Merge branch 'development' of vatican.nhlbi.nih.gov:/home/gitrepos/ismrmrd into development
new 05ae22a Made changes to Java interface to expose getTraj and setTraj appropriately
new 4e6c6b9 giving all complex types global names in schema
new 31f0c7b Merge branch 'development' of github.com:nih-fmrif/ismrmrd into development
new 118018b Changes to schema and python bindings to fix xml header and readArray.
new 6cd599a using FindJNI for Java bindings.
new 7c73447 heavily cleansing Python binding/API
new c3fe968 first checkin on local branch
new bf7a472 adding FindNumPy.cmake for Python bindings.
new 96742ee forcing Fortran-style order in NumPy array (bindings)
new 57f173c updating FindXSD to respect find_package args.
new 36a6247 Merge remote-tracking branch 'origin/development' into hx_development
new 1c1dd3e add more data types
new f7b316d changing binding install directories to language name
new 0f7dd64 updating Java XML bindings for newest schema version.
new 91e52e7 working on Matlab + ISMRMRD + HDF5 interface
new 7e5011b Fixed size of physio time stamps.
new caf66d1 Reverted size of physiology_time_stamps change for now. Deferred to a mojore version change.
new 401fa57 adding working example for Matlab API
new 29434c9 moving Java XML API to the matlab package
new 4daeaf6 Continuing to work on matlab interace.
new 1454f25 Install a copy of the jar file inside the matlab class. Matlab api fix so that an error isreturned if the data does not exist yet.
new fb8e97f Merge branch 'development' of vatican.nhlbi.nih.gov:/home/gitrepos/ismrmrd into development
new 3e3bf48 Fixed bug is matlab api, acquisition flagbit.
new 933ab5d Changed matlab api so that readAcquisition sets the data shape to match what is given in the corresponding header.
new 0bb6439 Prepping for new matlab API.
new 54f99e1 New matlab API. Acquisitions are working. Lots more to do.
new d883988 Slowly migrating back to a (faster) matlab class.
new f49e7e4 New matlab class style interface working for acquisitions.
new c8a9671 Can now properly append acquisitions.
new 52aa30e Started to migrage ImageHeader to new style matlab api.
new dc8e0e3 Starting to fix bugs in ImageHeader in matlab api.
new bb0348c Merge branch 'development' into development_merge_hx
new f8d3082 Fixed python bindings to compile cleanly with NumPy 1.7 API
new 9c5fbca Merge branch 'development' of vatican.nhlbi.nih.gov:/home/gitrepos/ismrmrd into development
new a203d7d A simple matlab reconstruction example.
new 4fc2cd1 Fixed a few bugs in the matlab interface and add a recon example.
new 4bc1b14 adding Java XML header API docs to matlab install destination
new 3e9b42b fixing build dependencies for Java API/docs
new a082f58 Merge branch 'development_merge_hx' of vatican.nhlbi.nih.gov:/home/gitrepos/ismrmrd into development
new 1e307c1 revert to Java .jar depending on native Java library.
new 45f2631 fix #8: cmake now autodetects java include
new 4237508 Merged with Ghislain's changes and the changes on vatican
new 6de1ac7 fix windows hdf5 linkage for latest hdf5 package
new b250ecb Merge branch 'development' of vatican.nhlbi.nih.gov:/home/gitrepos/ismrmrd into development
new c984154 Fixed matlab generated files to have the same layout as the ones generated by the C++ code.
new e906c29 Changed byte packing and packing to use uint8.
new 37ea9b3 Fixed number of physio time stamps in byte array conversion.
new a59803e Fixed byte array conversion for ImageHeader
new e6ddcc1 Added type and size checking to the matlab API for acquisition headers.
new 6ec4fcd Add type checking to matlab ImageHeader
new 5b344f3 fix a python binding
new 6e07c3a restore compatibility with numpy 1.6
new 02cc2f2 Revert "restore compatibility with numpy 1.6"
new ca9e3ca Restoring compatibility with NumPy 1.6 again
new 824dca6 removing NumPy version check in bindings CMakeLists
new cfe48a4 add image attrib support
new 11bfd85 Merge branch 'development' into hx_development_gadgetron_2p5
new 33d9f2d fix a bug for multiple runs with the same group name
new 11d24a7 Fixes for Windows compilation
new f039992 fix for more windows hdf5 linkage
new 81584a3 Removed windows option that previously enforced unicode chars. Unicode encoding is not compatible with dcmtk.
new 074dbc8 Merge branch 'development' of ssh://git.code.sf.net/p/ismrmrd/code into development
new f0c4bf4 change the xsd for dicom gtplus
new fa078a6 Fixed the numbering on the AcquisitionFlags
new a5f4304 add multiple measurements
new 0b420b6 merge from sf/development
new b3e9497 change flipAngle to float
new 207597c change the dependency measurement definition in schema
new 3c02cb4 birthday goes back to xs:date
new 688fb6a adding close() method to IsmrmrdDataset for Python bindings
new db681da adding crude Python example create/recon dataset scripts
new a0b7bac allow IsmrmrdDataset to open HDF5 file read-only
new 42de178 Merge branch 'development' of ssh://git.code.sf.net/p/ismrmrd/code into development_sf
new c8b191f fix a comment in ismrmrd_hdf5.h
new 7057210 add /usr/lib in list of hints for XSD stuff
new 0ff5646 put Boost_NO_BOOST_CMAKE into if(WIN32)
new d20f85d Fixes broken test for t_ndarraycontainer
new 331d4e1 fix spelling mistake picked up by lintian
new 6a40789 adding ISMRMRD Image creation to Python example
new 876e6ec add Numpy friendly accessor for getTraj
new eabc567 major rewrite of cmake files
new ac5a67a add find mechanism for libismrmrd_xsd
new ced475e fix for windows compilation
new 9601fa8 Change top level CMakeLists.txt to select Release mode build if build type not specified
new 490c2b9 enabling Boost_NO_BOOST_CMAKE option for all systems
new 038a1cc change the ismrmrd for windows compilation
new 9200ebf Added java xmlhdr datatypes to the xmlhdr parser.
new 9a9dd5b Added todo file.
new 71e4c4a Completed C style type creation
new 882cb06 added last types for using C-style api
new 5610833 Merge branch '2.0' of ssh://git.code.sf.net/p/ismrmrd/code into 2.0
new d27929d Starting to flesh out C interface.
new 90ab007 Basic C program to test the C API.
new d42f2d0 Changed function name capitalization.
new 2f9c46d Added namespace-like protection around C interface. Beginning to build up C++ interface.
new 13ee8bf Added some Image functionality.
new 666d8e8 More additions to the C++ classes.
new 3e72300 Stubbed out dataset C header.
new dca3a79 starting to work on the file stuff
new 84927e6 HDF5 group creation working.
new dc09e2d Can read and write XML header.
new 7a34e3e Started working on XML library
new 0216eda Added C error handling functionality.
new 1da272e Further work on XML library
new cfe9c2b Get number of acquisitions works
new b3d00c7 fixing CMakeLists for ISMRMRD 1.0 C-API.
new b641ca9 More work on XML interface
new a2978a4 Just working through the XML stuff
new bfa2d5c add end of scan
new 0d8fa18 Merge remote-tracking branch 'sf/development' into hx_development_20140724_vatican
new 36b4044 remove end_scan_data flag
new 74ddb5a changes to XML functionality
new 79a0ff6 Removed custem classes for strings and vectors
new 2f3e02a The new XML library can now deserialize and serialize
new fc3f471 Added XML example with ALL fields set
new 3546d98 Fixed minor bugs in XML library
new 8ddf246 Changed search order as suggested by Plutonium Heart
new 255fa72 Added missing export file to CMakelists.txt install directive
new 0c2cc19 Added ismrmrd_xml library to the find script
new 6111a77 fix a windows compilation error
new fe61505 Merge branch 'development_sf' into hx_development_20140724_vatican
new aabea9a Added ISMRMRD meta data structures to xml library
new 09892ab Added missing headers
new 67936ae Started changes to ISMRMRD schema layout
new 0eb8892 fixing little bugs in xml/ and matlab/
new 67e4cdd fix windows compilation
new 77e9ae9 merge from xml
new 499398e Can now append acquisitions
new a76dfb6 merge from xml
new 7441550 fix linux linkage
new a7d0b4c Merge branch 'dev_xml_reorg' into hx_development_20140724_vatican
new 3b1be25 Can now read acquisition.
new 16c47a4 fix windows xsd warp
new d49b948 bug fixed: ismrmrd.cxx and ismrmrd.h get generated in xsd folder
new 6fce4f1 minor edits.
new 874e774 Merged new XML API
new 5561f13 Merged into one library and cleaned up some CMake files.
new fcdeffb Removing old hdf5 related stuff. Removed xml specific windows exports definitions.
new 72acd13 Removed unused cmake files.
new 0439910 Reorganized examples. All examples should be standalone.
new 90cdaf0 Added Cpp Dataset type. Can now read/write XML header and Acquisitions.
new 339d8dd use HDF5_ROOT to find hdf5 in windows
new 522f681 use HDF5_ROOT to find hdf5 in windows, remove the HDF5 DEBUG linkdage
new 506c96d Worked on ndarray
new 9552cee Add compilers flags for GNU and fixed an include
new 7589a89 Fixed memory allocation error in ndarray.
new 9bdaab3 Fixed nearly all GCC compiler warnings. Switched to c++0x standard.
new e673214 adding an include for compilation via GCC 4.3
new 3977ab8 Cleaning up compiler issues on older versions of GCC.
new 270ca77 Added compiler flag to force HDF5 macros to use the HDF1.8 API.
new 698dadc Merge remote-tracking branch 'origin/development' into dev_xml_reorg
new 83fcf99 Forcing HDF calls to adhere to the 1.8 syntax.
new 1fe6c5e Replaced H5Tarray_create macro with H5Tarray_create2 function call.
new c4f450f Added versioning including a check of the XML schema's SHA1 hash to help remember to increase minor version number when changing the schema.
new b102f84 add more constructors to MatrixSize and Limit
new a680521 Changed C++ API. Headers are now structs with just a few methods.
new 51a5fdc Fixed typo in ImageTypes
new 6b9c277 Changed the logic of the C++ interface to allow for casting between ISMRMRD_Acquisition and Acquisition.
new 49059e8 Switched C++ NDArray to be castable to C version.
new 456896a Added convenience class FlagBit.
new 49c19d7 Changed implementation of C++ ImageHeader and Image to be castable to and from C version.
new 16ab6ca Added C++ readAcquisition which takes an Acquisition pointer in/out
new 709d79b Now comparing a cleaning (no linebreaks or whitespace) version of the schema when hashing
new a8e97fc Merge branch 'development' of ssh://git.code.sf.net/p/ismrmrd/code into development
new 80819d9 add const on some MetaContainer functions
new a328b26 Added Image and NDArray HDF5 datatypes and data type functions.
new c2332ae merge from sf
new ca42e3a fix the errors after merging
new e343902 Added function to append a vector in general.
new e802c55 More work on appending.
new 8044d23 Can now append images and ndarrays in array mode.
new 6cad212 Added image data size method.
new ea8b501 Working on C++ interface for strings.
new 2f8fb73 Fixed C++ api to only use references to prevent unecessary data copies.
new b00cbe8 Squashed commit of the following:
new 478198b Merged from development
new 81c7bbb Cmake module changed to simplify compiling on Windows
new 441ab6b cmake: removal of forced prefix
new a0e2e67 cmake: add minor version number to soversion to produce the right symlink
new 67dd872 Fixed memory allocation for trajectory in C++ wrapper.
new f5b493e Merged G's cmake changes. Will undo later.
new 0078f92 Reorganized library layout for standardizing install and header naming ismrmrd/meta.h,etc..
new a362f56 cleaned up findismrmrd
new d457faf Modified cmake FindFFTW
new 9a9f121 Defining some types for windows compilers.
new fde2511 More header fixes for windows
new 1c3086d Attempt at fixing ISMRMRD_THROW macro on windows.
new 49dfe01 Making the c code C89 because MS is lame.
new 34ae9d7 Fixing more windows woes.
new 4b816fd improve memory safety in cleanup / free methods
new 7f21bbd harden checks for valid pointers
new a445512 harden checks for valid pointers
new d3b7d22 Fixed append image and append array to reverse the labels in the hdf5 array to conform with the C-style hdf5 labeling. dimensions are N x CHA x Z x Y x X.
new 9bb1f3b add support for cpack
new 058d903 don't track autogenerated file
new 013b9f3 add support for GnuInstallDirs install tree
new cdae315 default to GnuInstallDirs mode
new c4de757 add paths for bindings (some are temporary)
new 7af4eb9 Revert "add paths for bindings (some are temporary)"
new 0297b79 Revert "default to GnuInstallDirs mode"
new 6895ef8 Revert "add support for GnuInstallDirs install tree"
new 1e318f0 Added explicit numeric values to flags.
new 4668fdf Added more explicit numbers to ismrmd header to simplify checking on other platforms.
new 6f28464 Starting to work on bringing matlab api to version 1.0 specs.
new a5d4537 Removed unneeded xml subdirectory
new 6d2cf28 Added export statements to the C-API.
new ae67060 Changed C code error checking (no slient fails) and put return codes for most functions.
new 891e727 Fixed declaration for c89 style Win compiler
new fcba059 Added first simple application to display version info
new fac5d4d reorganizing Doxygen documentation
new c0c842a Working on shepp-logan phantom utility.
new b8ae9f0 Merge
new 2c89242 Utility to generate Cartesian Shepp-Logan phantom dataset working again.
new b2f81c7 MH:CMakeLists file fixed so code compiles on Windows
new 87ee26f working on ndarray c++ api and utilities.
new 774accf Added a couple of helper methods for sizes. Fixed some loop counters to use unsigned ints.
new 24bcf1d add windows packaging and windows install dependencies
new 5273706 merge from sf/development
new 4d95252 Merge branch 'development' of ssh://git.code.sf.net/p/ismrmrd/code into development
new 58d1581 win install hdf5 dependencies
new cf0ad26 Fixed typo in type declaration
new 0c5e494 Added export statements for Windows
new 7f6139d Trying to fix windows export issue.
new ad16758 add cpack install directory
new 3a3898d add cpack nsis install name
new 1098b09 use cpack packaging is correct
new 26a3167 Merge remote-tracking branch 'origin/development' into packaging-cpack
new f1b105c Fixed memcpy error in c-api. Removed extra output from cartesian phantom utility.
new dcda351 only use cpack packging prefix in linux
new 8c4590b use cpack packaging only in linux
new aa2bce8 finishing C-portion of error handling stack
new 903fa4a Removed Java bindings.
new 06b8105 Merged Joe's error handling code.
new fc06170 Revert "finishing C-portion of error handling stack"
new 91a3db6 "fix" my reverted commit to appease C89 Windows compiler
new c4c5ac9 Fixed recon2d example utility.
new 141ea78 add support for linking with system pugixml
new b35fbae Working on templating images.
new 44cd332 merge from development
new e762da5 adding exception throws using error stack messages
new a4b7dac fixing find_library line in FindIsmrmrd.cmake
new dd456d0 removing usage of strdup from dataset.c (my fault)
new 8c1896f Changed the SHA1 hash variable to be a define to pevent problems from multiple includes
new e5b0878 Merge branch 'development' of ssh://git.code.sf.net/p/ismrmrd/code into HEAD
new fa32dd5 WIP C++ API changes.
new 3060d02 Merged in exception throwing.
new 6733ac5 Finishing up making Image templated.
new d0f8077 refine the packaging
new 52e2e1a Windows bug fixed
new e2ab524 Merge remote-tracking branch 'origin/development' into packaging-cpack
new 5cf1957 add <cstring> to ismrmrd_phantom.cpp
new 24b4e66 first steps in pushing HDF5 errors onto ISMRMRD error stack
new a1ccebf adding more HDF5 error handling in dataset.c
new a398449 eliminating duplicate code in append_element
new d8f4a93 adding a read_element function for datasets
new c51d1cd more fixes for Windows C89 limitations
new d9de253 Merge remote-tracking branch 'sf/development' into packaging-cpack
new d3ccb7c Merge branch 'packaging-cpack' of vatican.nhlbi.nih.gov:/home/gitrepos/ismrmrd into packaging-cpack
new 4af6055 utilities: check for both FFTW3 and Boost PO
new d2e4113 Added version number to the schema and to the xml header.
new bf1ae9e Modified creation and installation of version.h. Improved XMLHDR versioning.
new bcfc3cb Fixed dataset methods to return void and only throw exceptions. Removed unused c++ examples. Added c example to the build.
new cacea24 Got rid of some compiler warnings.
new bc0e6e8 Removed obsolete tests directory.
new 473b827 Removed (disabled) tests directory list from the main CMakeLists file.
new 41b48f1 Disabled c example. Not compatible with stupid windows non-C99 compiler.
new 6e5a91b Made c bits c89 compatible for windows visual studio compatibility.
new ad56669 Trying to fix plain c example on windows.
new 4f0d548 Working on making matlab api compatible with v1.0
new d094a5b Added data serialization to the Matalb code
new 64f0ff9 Matlab api - suppress output in xml serialize.
new f89ca8c Working matlab generate data set example.
new 810e83b Added xml validation to Matlab. Fixed a bug in the produced XML document as a consequence
new 0bd173e Merge branch 'development' of ssh://git.code.sf.net/p/ismrmrd/code into development
new 654adb8 ISMRMRD_EncodingCounters -> EncodingCounters
new 3953491 First crappy version of matlab xml deserialize function.
new 0e8a778 initial commit of cython bindings
new 73efc7b adding Dataset to python bindings
new 2e52373 adding boilerplate Cython interface to libismrmrd
new 695e0ba updating SWIG build to use C-API only
new 3a80ba3 Cleaning out old python swig bindings.
new 73d5171 Removed references to block mode. Decided to not implement ragged images/arrays.
new f75880a adapt example Python script to new Python API
new 5275dce Merge branch 'development' of ssh://git.code.sf.net/p/ismrmrd/code into development
new 4c0f3fb merge single diff of pyismrmrd as of commit time
new 412c901 merge from pyismrmrd:
new 0de663b update dataset creation Py script
new 9ebf698 Continuing to stub out matlab deserialize function.
new b4c9d62 Fixed Matlab xmlhdr deserialize. Simple Matlab examples are now working again.
new e8849ff Revived Michael's matlab spiral recon example
new ad35b9a Renamed matlab spiral recon example
new 1dbaf4b Matlab simple spiral example works with the new api. Modified matlab trajectory (fixed shape).
new 3992776 Make sure that AcquisitionHeader blocks have the proper shape.
new 9df10e9 Fixed reading images and arrays. Fixed bug in python binding.
new 49dcd11 Added channel mask stuff to c-api.
new 8971440 C++ channel mask.
new 2168e6f Python opens dataset at creation
new cd3a738 tweaked python examples to have files opened by default.
new e645acc Fixed Matlab Imageheader to match the C ImageHeader
new c4e4a8e Removed spacing the Matlab ImageHeader
new dbf2626 Fixed a few bugs in the Matlab xml serializer
new 6291eea Work in progress - switching acq.data etc. accessor.
new 33b5c7a tweak to the indexing
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