[suitesparse] 02/03: Merge tag 'upstream/4.4.2'
Sébastien Villemot
sebastien at debian.org
Sat Jan 17 21:10:07 UTC 2015
This is an automated email from the git hooks/post-receive script.
sebastien pushed a commit to branch master
in repository suitesparse.
commit fce2c70b63a6fa4022a1d46b173896ae4bcda538
Merge: 9a6bfc2 67ac24f
Author: Sébastien Villemot <sebastien at debian.org>
Date: Tue Jan 13 18:51:57 2015 +0100
Merge tag 'upstream/4.4.2'
Upstream version 4.4.2
AMD/Demo/Makefile | 11 +-
AMD/Demo/amd_demo.out | 6 +-
AMD/Demo/amd_demo2.out | 4 +-
AMD/Demo/amd_l_demo.out | 6 +-
AMD/Doc/AMD_UserGuide.pdf | Bin 256147 -> 271996 bytes
AMD/Doc/AMD_UserGuide.tex | 4 +-
AMD/Doc/ChangeLog | 10 +-
AMD/Include/amd.h | 19 +-
AMD/Include/amd_internal.h | 31 +-
AMD/Lib/GNUmakefile | 5 +-
AMD/Lib/Makefile | 3 +-
AMD/MATLAB/amd_make.m | 16 +-
AMD/MATLAB/amd_mex.c | 6 -
AMD/Makefile | 2 +-
AMD/README.txt | 2 +-
AMD/Source/amd_control.c | 13 +-
AMD/Source/amd_global.c | 75 +-
AMD/Source/amd_info.c | 20 +-
AMD/Source/amd_order.c | 40 +-
BTF/Doc/ChangeLog | 4 +
BTF/Include/btf.h | 4 +-
BTF/MATLAB/btf_make.m | 5 +
BTF/Makefile | 2 +-
CAMD/Demo/Makefile | 11 +-
CAMD/Demo/camd_demo.out | 7 +-
CAMD/Demo/camd_demo2.out | 5 +-
CAMD/Demo/camd_l_demo.out | 7 +-
CAMD/Doc/CAMD_UserGuide.pdf | Bin 249742 -> 265441 bytes
CAMD/Doc/CAMD_UserGuide.tex | 4 +-
CAMD/Doc/ChangeLog | 10 +-
CAMD/Include/camd.h | 19 +-
CAMD/Include/camd_internal.h | 35 +-
CAMD/Lib/GNUmakefile | 5 +-
CAMD/Lib/Makefile | 3 +-
CAMD/MATLAB/camd_make.m | 16 +-
CAMD/MATLAB/camd_mex.c | 6 -
CAMD/Makefile | 4 +-
CAMD/README.txt | 2 +-
CAMD/Source/camd_control.c | 13 +-
CAMD/Source/camd_global.c | 75 +-
CAMD/Source/camd_info.c | 23 +-
CAMD/Source/camd_order.c | 40 +-
CCOLAMD/Demo/Makefile | 7 +-
CCOLAMD/Demo/ccolamd_example.out | 4 +-
CCOLAMD/Demo/ccolamd_l_example.out | 4 +-
CCOLAMD/Doc/ChangeLog | 8 +
CCOLAMD/Include/ccolamd.h | 12 +-
CCOLAMD/Lib/Makefile | 5 +-
CCOLAMD/MATLAB/ccolamd_make.m | 20 +-
CCOLAMD/MATLAB/ccolamd_test.m | 6 +-
CCOLAMD/Makefile | 2 +-
CCOLAMD/README.txt | 2 +-
CCOLAMD/Source/ccolamd.c | 95 +-
CCOLAMD/Source/ccolamd_global.c | 16 +-
CHOLMOD/Check/cholmod_check.c | 23 +-
CHOLMOD/Cholesky/cholmod_amd.c | 11 -
CHOLMOD/Cholesky/cholmod_analyze.c | 10 +-
CHOLMOD/Cholesky/cholmod_colamd.c | 3 -
CHOLMOD/Cholesky/cholmod_rowfac.c | 40 +-
CHOLMOD/Cholesky/cholmod_solve.c | 3 -
CHOLMOD/Cholesky/t_cholmod_rowfac.c | 6 +-
CHOLMOD/Core/cholmod_common.c | 136 +-
CHOLMOD/Core/cholmod_complex.c | 67 +-
CHOLMOD/Core/cholmod_dense.c | 15 -
CHOLMOD/Core/cholmod_error.c | 8 +-
CHOLMOD/Core/cholmod_factor.c | 1 +
CHOLMOD/Core/cholmod_memory.c | 55 +-
CHOLMOD/Demo/Makefile | 6 +-
CHOLMOD/Demo/cholmod_demo.c | 5 +
CHOLMOD/Demo/cholmod_demo.h | 1 +
CHOLMOD/Demo/cholmod_l_demo.c | 136 +-
CHOLMOD/Demo/gpu.sh | 4 +
CHOLMOD/Doc/ChangeLog | 39 +
...2014_Workshop_Rennich_Stosic_Davis_preprint.pdf | Bin 0 -> 1553980 bytes
CHOLMOD/Doc/UserGuide.pdf | Bin 552769 -> 562847 bytes
CHOLMOD/Doc/UserGuide.tex | 164 +-
CHOLMOD/GPU/cholmod_gpu.c | 479 +
CHOLMOD/GPU/cholmod_gpu_kernels.c | 6 +
CHOLMOD/GPU/cholmod_gpu_kernels.cu | 196 +
CHOLMOD/GPU/t_cholmod_gpu.c | 1397 +
CHOLMOD/Include/cholmod.h | 5 +
CHOLMOD/Include/cholmod_cholesky.h | 26 +-
CHOLMOD/Include/cholmod_complexity.h | 7 +-
CHOLMOD/Include/cholmod_core.h | 277 +-
CHOLMOD/Include/cholmod_function.h | 155 +
CHOLMOD/Include/cholmod_gpu.h | 80 +
CHOLMOD/Include/cholmod_gpu_kernels.h | 50 +
CHOLMOD/Include/cholmod_internal.h | 35 +-
CHOLMOD/Include/cholmod_modify.h | 21 +
CHOLMOD/Include/cholmod_supernodal.h | 8 +-
CHOLMOD/Include/cholmod_template.h | 7 +
CHOLMOD/Lib/Makefile | 35 +-
CHOLMOD/MATLAB/Test/test3.m | 31 +-
CHOLMOD/MATLAB/cholmod_make.m | 11 +-
CHOLMOD/MATLAB/cholmod_matlab.c | 18 +-
CHOLMOD/MATLAB/ldlchol.c | 2 +-
CHOLMOD/MATLAB/mread.c | 2 +-
CHOLMOD/Makefile | 2 +-
CHOLMOD/MatrixOps/cholmod_norm.c | 4 +-
CHOLMOD/Modify/cholmod_updown.c | 39 +-
CHOLMOD/Modify/t_cholmod_updown.c | 3 +-
CHOLMOD/Partition/cholmod_camd.c | 11 -
CHOLMOD/Partition/cholmod_csymamd.c | 13 +-
CHOLMOD/README.txt | 2 +-
CHOLMOD/Supernodal/cholmod_super_numeric.c | 18 +-
CHOLMOD/Supernodal/cholmod_super_symbolic.c | 162 +-
CHOLMOD/Supernodal/t_cholmod_gpu.c | 972 -
CHOLMOD/Supernodal/t_cholmod_super_numeric.c | 1324 +-
CHOLMOD/Tcov/Makefile | 407 +-
CHOLMOD/Tcov/Matrix/C9840 | 30502 +++
CHOLMOD/Tcov/amdtest.c | 10 +-
CHOLMOD/Tcov/camdtest.c | 10 +-
CHOLMOD/Tcov/cctest.c | 64 +-
CHOLMOD/Tcov/cm.c | 76 +-
CHOLMOD/Tcov/cm.h | 1 +
CHOLMOD/Tcov/ctest.c | 69 +-
CHOLMOD/Tcov/go | 15 +
CHOLMOD/Tcov/memory.c | 21 +-
CHOLMOD/Tcov/null2.c | 3 +
COLAMD/Demo/Makefile | 7 +-
COLAMD/Demo/colamd_example.out | 4 +-
COLAMD/Demo/colamd_l_example.out | 4 +-
COLAMD/Doc/ChangeLog | 8 +
COLAMD/Include/colamd.h | 12 +-
COLAMD/Lib/Makefile | 5 +-
COLAMD/MATLAB/colamd_make.m | 20 +-
COLAMD/MATLAB/colamd_test.m | 6 +-
COLAMD/MATLAB/colamdmex.c | 2 -
COLAMD/MATLAB/colamdtestmex.c | 2 -
COLAMD/MATLAB/symamdmex.c | 2 -
COLAMD/MATLAB/symamdtestmex.c | 2 -
COLAMD/Makefile | 2 +-
COLAMD/README.txt | 2 +-
COLAMD/Source/colamd.c | 95 +-
COLAMD/Source/colamd_global.c | 16 +-
CSparse/Demo/cs_demo.out | 44 +-
CSparse/Doc/ChangeLog | 8 +
CSparse/Include/cs.h | 6 +-
CSparse/MATLAB/CSparse/cs_make.m | 5 +
CSparse/MATLAB/UFget/mat/UF_Index.mat | Bin 95255 -> 117643 bytes
CSparse/MATLAB/cs_install.m | 20 +-
CSparse/Makefile | 2 +-
CSparse/README.txt | 2 +-
CXSparse/Demo/cs_demo.out | 372 +-
CXSparse/Doc/ChangeLog | 8 +
CXSparse/Include/cs.h | 6 +-
CXSparse/MATLAB/CSparse/private/cs_make_helper.m | 5 +
CXSparse/MATLAB/UFget/mat/UF_Index.mat | Bin 95255 -> 117643 bytes
CXSparse/MATLAB/cs_install.m | 20 +-
CXSparse/Makefile | 2 +-
CXSparse_newfiles.tar.gz | Bin 577677 -> 0 bytes
CXSparse_newfiles/Include/cs.h | 6 +-
.../MATLAB/CSparse/private/cs_make_helper.m | 5 +
CXSparse_newfiles/MATLAB/cs_install.m | 20 +-
CXSparse_newfiles/Makefile | 2 +-
ChangeLog | 483 +
Contents.m | 2 +-
GPUQREngine/Demo/Makefile | 40 +
GPUQREngine/Demo/README.txt | 12 +
GPUQREngine/Demo/gpuqrengine_demo.cpp | 337 +
GPUQREngine/Doc/ChangeLog | 3 +
GPUQREngine/Doc/gpl.txt | 340 +
GPUQREngine/Include/GPUQREngine.hpp | 58 +
GPUQREngine/Include/GPUQREngine_BucketList.hpp | 168 +
GPUQREngine/Include/GPUQREngine_Common.hpp | 82 +
GPUQREngine/Include/GPUQREngine_Front.hpp | 167 +
GPUQREngine/Include/GPUQREngine_FrontState.hpp | 30 +
GPUQREngine/Include/GPUQREngine_GraphVizHelper.hpp | 19 +
GPUQREngine/Include/GPUQREngine_Internal.hpp | 37 +
GPUQREngine/Include/GPUQREngine_LLBundle.hpp | 96 +
GPUQREngine/Include/GPUQREngine_SEntry.hpp | 25 +
GPUQREngine/Include/GPUQREngine_Scheduler.hpp | 168 +
GPUQREngine/Include/GPUQREngine_SparseMeta.hpp | 82 +
GPUQREngine/Include/GPUQREngine_Stats.hpp | 31 +
GPUQREngine/Include/GPUQREngine_TaskDescriptor.hpp | 117 +
GPUQREngine/Include/GPUQREngine_Timing.hpp | 46 +
GPUQREngine/Include/Kernel/Apply/block_apply.cu | 219 +
GPUQREngine/Include/Kernel/Apply/block_apply_1.cu | 12 +
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GPUQREngine/Include/Kernel/Apply/block_apply_2.cu | 12 +
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GPUQREngine/Include/Kernel/Apply/block_apply_3.cu | 12 +
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GPUQREngine/Include/Kernel/Apply/cevta_tile.cu | 152 +
GPUQREngine/Include/Kernel/Apply/params_apply.hpp | 63 +
.../Include/Kernel/Apply/pipelined_rearrange.cu | 195 +
.../Include/Kernel/Assemble/packAssemble.cu | 57 +
GPUQREngine/Include/Kernel/Assemble/sAssemble.cu | 19 +
.../Include/Kernel/Factorize/factorize_3_by_1.cu | 14 +
.../Include/Kernel/Factorize/factorize_vt.cu | 568 +
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.../Kernel/Factorize/factorize_vt_1_by_1_edge.cu | 15 +
.../Kernel/Factorize/factorize_vt_2_by_1.cu | 14 +
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.../Kernel/Factorize/factorize_vt_3_by_1.cu | 14 +
.../Kernel/Factorize/factorize_vt_3_by_1_edge.cu | 15 +
GPUQREngine/Include/Kernel/qrKernel.cu | 74 +
GPUQREngine/Include/Kernel/sharedMemory.hpp | 51 +
GPUQREngine/Include/Kernel/uberKernel.cu | 45 +
GPUQREngine/Lib/Makefile | 204 +
GPUQREngine/Makefile | 41 +
GPUQREngine/README.txt | 36 +
GPUQREngine/Source/BucketList/BucketList.cpp | 129 +
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.../BucketList/BucketList_PostProcessing.cpp | 44 +
GPUQREngine/Source/GPUQREngine_ExpertDense.cpp | 217 +
GPUQREngine/Source/GPUQREngine_ExpertSparse.cpp | 30 +
GPUQREngine/Source/GPUQREngine_GraphVizHelper.cpp | 216 +
GPUQREngine/Source/GPUQREngine_Internal.cpp | 88 +
GPUQREngine/Source/GPUQREngine_UberKernel.cu | 30 +
GPUQREngine/Source/LLBundle/LLBundle.cpp | 35 +
GPUQREngine/Source/LLBundle/LLBundle_AddTiles.cpp | 114 +
GPUQREngine/Source/LLBundle/LLBundle_Advance.cpp | 80 +
GPUQREngine/Source/LLBundle/LLBundle_GPUPack.cpp | 56 +
.../LLBundle/LLBundle_PipelinedRearrange.cpp | 106 +
.../LLBundle/LLBundle_UpdateSecondMinIndex.cpp | 50 +
GPUQREngine/Source/Scheduler/Scheduler.cpp | 254 +
.../Source/Scheduler/Scheduler_FillWorkQueue.cpp | 463 +
GPUQREngine/Source/Scheduler/Scheduler_Front.cpp | 209 +
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GPUQREngine/Source/Scheduler/Scheduler_Render.cpp | 96 +
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.../Source/Scheduler/ssgpu_maxQueueSize.cpp | 28 +
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KLU/Demo/Makefile | 13 +-
KLU/Demo/kludemo.out | 24 +-
KLU/Doc/ChangeLog | 15 +
KLU/Doc/KLU_UserGuide.pdf | Bin 291746 -> 314130 bytes
KLU/Doc/KLU_UserGuide.tex | 2 +-
KLU/Include/klu.h | 16 +-
KLU/Include/klu_internal.h | 2 +-
KLU/MATLAB/klu_make.m | 27 +-
KLU/MATLAB/klu_mex.c | 6 -
KLU/Makefile | 2 +-
KLU/README.txt | 2 +-
KLU/Source/klu_analyze.c | 6 -
KLU/Source/klu_defaults.c | 6 -
KLU/Source/klu_diagnostics.c | 10 +-
KLU/Source/klu_factor.c | 2 -
KLU/Source/klu_kernel.c | 1 +
KLU/Source/klu_memory.c | 35 +-
KLU/Source/klu_refactor.c | 10 +-
KLU/Tcov/Makefile | 6 +-
KLU/Tcov/klutest.c | 43 +-
KLU/User/klu_cholmod.c | 6 -
KLU/User/klu_l_cholmod.c | 6 -
LDL/Demo/Makefile | 15 +-
LDL/Demo/ldlamd.out | 96 +-
LDL/Demo/ldllamd.out | 96 +-
LDL/Doc/ChangeLog | 8 +
LDL/Doc/ldl_userguide.pdf | Bin 242255 -> 242255 bytes
LDL/Doc/ldl_userguide.tex | 2 +-
LDL/Include/ldl.h | 6 +-
LDL/MATLAB/ldl_make.m | 6 +
LDL/MATLAB/ldlmain2.m | 9 +-
LDL/Makefile | 2 +-
LDL/README.txt | 6 +-
MATLAB_Tools/SFMULT/sfmult.c | 10 +-
MATLAB_Tools/SFMULT/sfmult.h | 2 +-
MATLAB_Tools/SFMULT/sfmult_anxnyt_k.c | 36 +-
MATLAB_Tools/SFMULT/sfmult_anxtyt.c | 6 +-
MATLAB_Tools/SFMULT/sfmult_anxtyt_k.c | 36 +-
MATLAB_Tools/SFMULT/sfmult_atxtyn_k.c | 36 +-
MATLAB_Tools/SFMULT/sfmult_atxtyt_k.c | 36 +-
MATLAB_Tools/SFMULT/sfmult_mex.c | 2 +-
MATLAB_Tools/SFMULT/sfmult_vector_1.c | 20 +-
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MATLAB_Tools/SFMULT/sfmult_xA.c | 12 +-
MATLAB_Tools/SFMULT/ssmult_transpose.c | 2 +-
MATLAB_Tools/SSMULT/ChangeLog | 4 +
MATLAB_Tools/SSMULT/ssmult_install.m | 5 +
MATLAB_Tools/UFcollection/UFindex.m | 12 +
MATLAB_Tools/UFcollection/UFlist.m | 2 +-
MATLAB_Tools/UFcollection/UFpage.m | 2 +-
MATLAB_Tools/UFcollection/UFstats.m | 64 +-
MATLAB_Tools/sparseinv/sparseinv.m | 4 +-
MATLAB_Tools/spok/private/spok_invalid.c | 12 +-
MATLAB_Tools/spok/spok.h | 18 +
MATLAB_Tools/spqr_rank/SJget/mat/SJ_Index.mat | Bin 67979 -> 67976 bytes
.../spqr_rank/save_samples_demo_spqr_rank.mat | Bin 21492 -> 21524 bytes
Makefile | 171 +-
RBio/Demo/RBdemo.c | 88 +-
RBio/Doc/ChangeLog | 8 +
RBio/Include/RBio.h | 32 +-
RBio/Makefile | 2 +-
RBio/RBio/RBmake.m | 5 +
RBio/RBio/RBraw.c | 6 +-
RBio/RBio/RBread.c | 9 +-
RBio/RBio/RBtype.c | 8 +-
RBio/RBio/RBwrite.c | 10 +-
RBio/README.txt | 2 +-
RBio/Source/RBio.c | 105 +-
RBio/Tcov/RBtest.c | 76 +-
README.txt | 12 +-
SPQR/Demo/Makefile | 113 +-
SPQR/Demo/README.txt | 11 +-
SPQR/Demo/demo_colamd.sh | 1 +
SPQR/Demo/demo_colamd2.sh | 1 +
SPQR/Demo/demo_colamd3.sh | 1 +
SPQR/Demo/demo_metis.sh | 1 +
SPQR/Demo/demo_metis2.sh | 1 +
SPQR/Demo/demo_metis3.sh | 1 +
SPQR/Demo/go4.m | 225 +
SPQR/Demo/go5.m | 254 +
SPQR/Demo/qrdemo.cpp | 24 +-
SPQR/Demo/qrdemo_diary.txt | 56 -
SPQR/Demo/qrdemo_gpu.cpp | 144 +
SPQR/Demo/qrdemo_gpu2.cpp | 106 +
SPQR/Demo/qrdemo_gpu3.cpp | 106 +
SPQR/Demo/qrdemo_out.txt | 155 +-
SPQR/Demo/qrdemoc_out.txt | 2 +
SPQR/Demo/spqr_gpu.m | 81 +
SPQR/Demo/spqr_gpu2.m | 76 +
SPQR/Demo/spqr_gpu3.m | 76 +
SPQR/Doc/ChangeLog | 14 +
SPQR/Doc/README.txt | 7 +-
SPQR/Doc/qrgpu_paper.pdf | Bin 0 -> 783763 bytes
SPQR/Doc/spqr_user_guide.pdf | Bin 196787 -> 226386 bytes
SPQR/Doc/spqr_user_guide.tex | 58 +-
SPQR/Include/SuiteSparseQR.hpp | 57 +-
SPQR/Include/SuiteSparseQR_definitions.h | 8 +-
SPQR/Include/spqr.hpp | 24 +-
SPQR/Include/spqrgpu.hpp | 81 +
SPQR/Lib/Makefile | 30 +-
SPQR/MATLAB/spqr.cpp | 2 +-
SPQR/MATLAB/spqr_make.m | 12 +
SPQR/MATLAB/spqr_mx.cpp | 41 +-
SPQR/MATLAB/spqr_qmult.cpp | 3 -
SPQR/MATLAB/spqr_solve.cpp | 4 +-
SPQR/Makefile | 2 +-
SPQR/Matrix/Franz6_id1959_aug.mtx | 48477 +++++
SPQR/Matrix/Groebner_id2003_aug.mtx | 173678 ++++++++++++++++++
SPQR/Matrix/lp_e226.mtx | 2834 +
SPQR/Matrix/lp_e226_transposed.mtx | 2770 +
SPQR/README.txt | 9 +-
SPQR/SPQRGPU/spqrgpu_buildAssemblyMaps.cpp | 191 +
SPQR/SPQRGPU/spqrgpu_computeFrontStaging.cpp | 231 +
SPQR/SPQRGPU/spqrgpu_kernel.cpp | 737 +
SPQR/Source/SuiteSparseQR.cpp | 41 +-
SPQR/Source/SuiteSparseQR_expert.cpp | 33 +-
SPQR/Source/SuiteSparseQR_qmult.cpp | 5 +-
SPQR/Source/spqr_1colamd.cpp | 19 +-
SPQR/Source/spqr_1factor.cpp | 22 +-
SPQR/Source/spqr_analyze.cpp | 306 +-
SPQR/Source/spqr_debug.cpp | 78 +-
SPQR/Source/spqr_factorize.cpp | 42 +-
SPQR/Source/spqr_freesym.cpp | 24 +
SPQR/Source/spqr_front.cpp | 6 +-
SPQR/Source/spqr_fsize.cpp | 13 +-
SPQR/Source/spqr_happly.cpp | 4 +-
SPQR/Source/spqr_kernel.cpp | 16 +-
SPQR/Source/spqr_parallel.cpp | 1 +
SPQR/Source/spqr_rconvert.cpp | 45 +-
SPQR/Source/spqr_rcount.cpp | 8 +-
SPQR/Source/spqr_rsolve.cpp | 5 +-
SPQR/Tcov/Makefile | 388 +-
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SPQR/Tcov/matrixlist.txt | 3 +-
SPQR/Tcov/qrtest.cpp | 197 +-
SuiteSparse_GPURuntime/Doc/ChangeLog | 3 +
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SuiteSparse_GPURuntime/Lib/Makefile | 51 +
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SuiteSparse_config/SuiteSparse_config.mk | 167 +-
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UMFPACK/Tcov/Make.4 | 2 +-
UMFPACK/Tcov/Make.5 | 2 +-
UMFPACK/Tcov/Make.6 | 2 +-
UMFPACK/Tcov/Make.7 | 2 +-
UMFPACK/Tcov/Make.8 | 2 +-
UMFPACK/Tcov/ut.c | 16 +-
450 files changed, 285298 insertions(+), 4982 deletions(-)
--
Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-science/packages/suitesparse.git
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