[cmor] branch debian/master created (now 80c210f)
Alastair McKinstry
mckinstry at moszumanska.debian.org
Tue Jul 21 12:54:13 UTC 2015
This is an automated email from the git hooks/post-receive script.
mckinstry pushed a change to branch debian/master
in repository cmor.
at 80c210f Removing ppc64el workaround; apparently problem fixed. Closes: #768136.
This branch includes the following new commits:
new f5d1cdf initial repo for cmor 2.0
new 52f2b5f adding the files that were under libcdms repo
new 9c53c22 test
new 7d4ccbb 2010-05-11 : updated tables 2010-05-11 : created a xls2csv script MUCH improved my life when Karl changes tables from now on. 2010-05-11 : sigma coord and irregular girds: implemented 2010-05-11 : cmor_lose new preserves the original variable id 2010-05-11 : cmor_zfactor MUST have values if zfactor is not time dependent
new 48364b0 2010-05-12 : CMIP5_fx add time dependency, fixed 2010-05-12 : user could pass any calendar name! Now has to match valid ones!
new 57fb784 preparing for tag rc9
new b5b6183 tiny update to test tagging
new 0fe5570 testing
new 44b54fc testing
new a463fb4 2010-05-20 : tagging RC9 2010-05-20 : fixed a bug in python interface when converting zfactor bounds array from 2D to the required 1D. 2010-05-20 : "changed sign" was always written in history even when not necessary. Fixed 2010-05-20 : newer tables
new be9c9ba 2010-05-20 : tagging RC9 2010-05-20 : fixed a bug in python interface when converting zfactor bounds array from 2D to the required 1D. 2010-05-20 : "changed sign" was always written in history even when not necessary. Fixed 2010-05-20 : newer tables
new e9149be 2010-05-24 : changed the way the final file name is constructed, uses time bounds if present, otherwise as before uses time values
new f2e2dfd updated tables to reflect correct values of valid min/max for areacella
new 6dc5d23 updated tables to reflect correct values of valid min/max for areacella
new bd061eb 2010-05-25 : trying a new way to store date in file names for Jamie. Probably going to be reverted
new 6d8287d 2010-05-27 : switch version tagging from svn to git 2010-05-27 : fixed abug in test patch number of NetCDF3 version i was using = instead of ==
new 147b07c 2010-05-28 : reverted file name construction to use first/last time. BUT added precision for daily and higher frequencies 2010-05-28 : fixed a bug in cmor checker when variable entry was "pop" would break 2010-05-28 : fixed default values of noerror in script from True to cmor.CMOR_CRITICAL
new a5a9b5c 2010-05-28 : cmor_checker now checks table md5s in file vs the one passed and vs our control online 2010-05-28 : new tables that include the ok_min/max_mean_absolute value
new 85f74dc tagged RC10
new bb7e95d 2010-06-01 : table generation was sometimes gen same value for valid_min and valid_max, fixed 2010-06-01 : table generation using %.4g instead of %.2g for valid min/max 2010-06-01 : new tables to reflect that 2010-06-01 : updated examples to work with abs min/max from tables 2010-06-01 : edited example to have only 1 file to edit when tweaking the data generation in test fortran/C samples. 2010-06-01 : changed cmor_dataset to trim input arguments, revelant mostly for [...]
new a15eab6 adding the ammended RELEASE NOTES
new 3d69e4a 2010-06-09 : changed absolute mean error from CRITICAL to NORMAL if less than an order of magnitude off 2010-06-09 : tables generated with min/max now being 3 sigma (from 2) and (20% form 5%) 2010-06-09 : Coord: depth_coord was wrongly defined as positive up, fixed
new b47a73f removing these files so I can repalce them with upper case version (stupid mac)
new 730c099 same files but now with upper case
new 4011ce8 2010-06-09 : cmor_axis non-monotnic error was showing incoorect set of bad values
new d9c861d 2010-06-09 : cmor axis entry "requested_bounds" now is also valid used to be "bounds_requested"
new b57f5e3 ok testing changes
new 4f5ec22 Merge remote branch 'gavin_test/master' into devel
new 648d6be removed tables related things
new 9971281 sym link to TestTables to not break examples
new d3e928b 2010-06-11 : shorten the TestTables to a minimum so they can't be confused with the real one and used in production 2010-06-11 : removed tables unused by examples 2010-06-11 : add ${Prefix}/share to the list of locations where to search for tables
new dc39d23 2010-06-14 : expanded the CMOR_MAX_GRIDS to 100 form 10. And replaced the "10" in the code with CMOR_MAX_GRIDS 2010-06-14 : updated python example and testtable to work w/o error about abs mean
new 8b2ca33 Updated doc for CMOR 2.0 reflecting new max number of grids
new 29d3671 Small patch to be able to read 'generic_levels' global attribute on tables and understand any level listed there as a generic level just like alevel and olevel
new 2dc634a removed 2 print statements
new 0bf68f2 updating version number : patch 2
new 5552e80 2010-08-18 : added a check for cmor_variables making sure axes/grid ids passed are valid 2010-08-18 : downgraded abs min/max CRITICAL error to NORMAL 2010-08-18 : dowgraded invalid min/max from NORMAL error to WARNING 2010-08-10 : cmor_setup, was initalizing strings beyhond the max number fo elts, cause seg fault with python (loop was to CMOR_MAX_ELEMENTS when it should have been CMOR_MAX_ATTRIBUTES)
new 8287573 2010-08-19 : dimensions were always stored as double regardless of what the table wanted. Fixed 2010-08-19 : go thru cmor_create_path to figure out isfixed and set frequency, even if directory layout is not required. 2010-08-19 : checker: works with version number of format major.minor.patch 2010-08-19 : checker: update git url from wich to fetch md5s tables 2010-08-19 : forcings attribute can now end with notes in between parenthesis
new da43f98 not creating directory when caling this and CMOR_CREATE_SUBDIRECTORIES is set off
new 86d7d5f not creating directory when caling this and CMOR_CREATE_SUBDIRECTORIES is set off, now with the correct value for the flag...
new ccc6a01 One little print statement uncommented and it was seg faulting. Fixed
new 211442a 2010-08-23 : tagging 2.1 2010-08-23 : create_output_path doesn't need to be called b4 cmor_write any more.
new faaf159 2010-08-23 : DRS was wrongly constructed for table Oclim
new 56b5ddc 2010-08-24 : when writing time only variables, the time_bnds would fail to write if passed at cmor_write time.
new 5dca7c6 removed a print statement
new fa08edf 2010-09-01 : fixed a bug on mac 32bit when reading in net3 version string 2010-09-01 : some vars with grid and singleton dims were wrongly analyzed by cmor_variable has not being defined with the right number of dimmensions. 2010-09-01 : updated doc. Was saying you can pass "none" for units when it really is: "" 2010-09-01 : updated doc. Was wrongly stating you can pass "none" if no missing_value
new d49f3ca removed a print statement in pywrapper
new 893a2a1 removed print statements
new f0503b7 2010-08-24 : when writing time only variables, the time_bnds would fail to write if passed at cmor_write time.
new 4bbd53d removing uneeded cmor_local.h file
new 05c9aba typo in check_cmor_compliant
new 7cc4879 poping stash changes back here
new 5a9e714 merging from master
new 9accda7 Adding debug codes for Joerg's problem
new 4088d10 cant compile on my mac checking it in so I try somewhere else
new 94fa643 reproduced Joerg's bug
new 1102dba Fixed Joerg's bug, had to do with checking only for the refvar dimension w/o also checking it's coming from the right table
new 230a823 2010-09-29 : Cleaned up error messages, now tries to output var/axis it was working on as well as table used. 2010-09-29 : When value that exceeds valid_min/max is found, now returns location of extreme point instead of first point encountered, as well as actuall coordinates values (not just indices)
new 658ff67 tweaked a syntax typo in hdf5 libs
new 1b68bd5 2010-09-29 : Cleaned up error messages, now tries to output var/axis it was working on as well as table used. 2010-09-29 : When value that exceeds valid_min/max is found, now returns location of extreme point instead of first point encountered, as well as actuall coordinates values (not just indices) 2010-09-22 : Joerg found a bug that was due to checking only the refvar.dimension w/o checking the actual tables as well 2010-09-01 : fixed a bug on mac 32bit when readi [...]
new 268f94d need to test this under Linux
new 5235bd8 2010-10-22 : fixed bug with variables using "grids" and singleton dimensions 2010-10-22 : upgraded to 2.4 in devel branch 2010-10-22 : exposed cmor_set_variable_attribute to users in Python 2010-10-22 : cell_measures var attribute is now called ext_cell_measures
new a984186 2010-10-22 : updated docs to reflect all these changes 2010-10-22 : exposed cmor_set/get/has_variable in Fortran interface, just like Python works only on "string" variables 2010-10-22 : add optional "parent_experiment_rip" to cmor_dataset (C,Fortran,Python) 2010-10-22 : fixed bug with variables using "grids" and singleton dimensions 2010-10-22 : upgraded to 2.4 in devel branch 2010-10-22 : exposed cmor_set_variable_attribute to users in Python 2010-10-22 : cell_meas [...]
new a2682f7 tagging 2.4.0
new c28e4ee 2010-10-27 : edited the test for permission on output directory, used to fail if you had group write privileges but that wasnt your main group
new 729ef40 put back cell_measures instead of ext_cell_measures
new 88401aa adding Jamie's example
new 8440f20 adapted Jamie's python script
new cc56258 2010-11-05 : added realm to gridspec file names 2010-11-05 : reverted ext_cell_measures to cell_measures
new 9d53937 2010-11-05 : file_name=True ignored in python if no var_id is passed to it as well.
new 70506b6 2010-11-05 : removed option, for now, to create non-standard calendars because the dates in filenames would be wrong.
new c08ca91 2010-11-05 : new doc updated by Karl.
new d4d4415 adde da bunch of Python test scrips
new b6fe27a 2010-11-11 : updated pywrapper from Jamie 2010-11-11 : new examples into Makefile for Python 2010-11-11 : added a flag that says need to cal cmor_grid on some axis (site and location)
new d97eda5 Updated doc
new e20be52 updated version number to 2.5.0
new e80f693 Updated Tests to be completely self-contained by distrib
new a9657f2 2010-11-18 : added a '/' after output path for tmp file testing
new d4ea9d1 2010-12-06 : turned off udunits2 warnings when reading database in
new 9da95a0 adding new test for string dims
new cd00802 2010-12-17 : fixed bug found by Jamie that didn't pass the correct args in get_var_Attribute 2010-12-16 : added two python test for var with string dimensions
new b319dcc 2010-12-17 : when passing character type axes, checking output is suppposed to be character
new 9b999fa updated cmor_set_variable_attrubtes to go thru an 'internal' one
new dceaec7 updated cmor_set_variable_attrubtes to go thru an 'internal' one
new 76e27f8 2011-01-25 : path produced w/o '/' or weird characters 2011-01-25 : cannot set global attribute if it is an attribute that can be set via cmor_dataset 2011-01-25 : cannot set var attribute after var has been created into nc file 2011-01-25 : cannot set var attribute if it is settable via cmor_variable 2011-01-25 : can handle "character type" singleton dimensions 2011-01-25 : does not stores units on character typevariables 2011-01-24 : cmor_axes, interval check clean [...]
new 237a484 releasing 2.5.3
new e6f572f 2011-02-02 : releasing 2.5.4 2011-02-02 : fixed a memory issue in the Python API for get_variable_attribute and has_variable_attribute
new 6a020f7 adding 2 tests that were on my laptop only
new 5ac5e76 2011-02-16 : added process id to temporary file names so that code can be run via mpi
new 20ab03c Merge branch 'devel' of uv-cdat.llnl.gov:cmor into devel
new ef2ad03 2011-02-23 : releasing 2.5.6 2011-02-23 : got cmor_set_variable_attribute to actually do something and not raise error all the time, thx to Larry Solheim to spot this. 2011-02-23 : fixed issue when writing 1 time step at a time for climatological means, issue could led to seg fault and bad final file names, thx to Koji Ogochi to spot this one.
new 56f6829 adding a test case for climatology issue
new d46de25 2011-02-25 : fixed bug for dims of length one where bounds needed to be flliped, it used to raise an unwarranted error
new dc0c2e8 Adding test from Larry to fixbug
new fc43047 2011-04-05 : not overwriting user time values in climatology case
new 9c73a7e Adding test from Larry to fixbug
new a2cda9c 2011-04-05 : not overwriting user time values in climatology case
new 67f2a95 done?
new 4e95d65 Adding test from Larry to fixbug
new f1bf12d 2011-04-05 : not overwriting user time values in climatology case
new a55481c Merge branch 'devel' of uv-cdat.llnl.gov:cmor into devel
new b73f51a Adding test from Larry to fixbug
new 5c8b122 2011-04-05 : not overwriting user time values in climatology case
new d100b0e Merge branch 'devel' of uv-cdat.llnl.gov:cmor into devel
new 66700aa 2011-04-07 : only adding extra time precision in file names if it is < 6hr instead of 1 day 2011-04-05 : not overwriting user time values in climatology case
new c15973f updating version number in include file
new b64bdbe 2011-04-26 : was setting coordinates attribute multiple times, now first check if the bit we are trying to ad d is already in
new aa964f4 2011-04-27 : fixed file name for climatologies, last bounds was set improperly 2011-04-26 : was setting coordinates attribute multiple times, now first check if the bit we are trying to add is already in
new eeed60e Adding the test cases for clim filename bounds
new 2c8af09 Tagging 2.5.9
new 7f664c7 testing phil bentley issue
new e5d1799 2011-05-26 : File name for subhourly were wrongly constructed, upped version to 2.6
new 32ab55d Fixed bug triggering wrong warning on bounds being at the beg/end of month
new eb21cf6 2011-06-13 : Tagging 2.6.1 2011-06-13 : Fixed bug triggering wrong warning on bounds being at the beg/end of month
new f70c576 2011-06-21 : Fixed bug using the wrong dims for checking validity of arrays in fortran interface - for vertices-
new 321685a 2011-06-23 : removing sloppy print statements in python wrap
new 722615d Tagging 2.7.1
new 13ec279 typo in version
new 2630682 slight update on test codes
new 3057e8e removed the treartlon in case 'X' axis has units not in degrees
new ceefdfd 2011-11-08 : Realized there was a difference in calendar names between cdtime and the CF conventions. CMOR now maps correctly the CF names to the cdtime names for correct internal processing. 2011-10-24 : Removed the treatlon in case 'X' axis has units not in degrees
new 5a7ad53 Updated RELEASE file to mention tagging of 2.8.0
new 1c89ddc Chekcing in version changes, getting ready for clim change
new 34739bd clim files end in -clim.nc instead of _clim.nc
new d6cb393 Fixed a bug in py wrapper where some list object where decref where they shouldn't leadi ng to memory leaks, thanks Jamie and al. for this bug fix
new 72835d2 Had the wrong conditional for check on validity for all axes except lon bounds, fixe dnow
new 6a7a17f Applied Jamie's patched with deallocating bug
new 0132000 Adding Jamie's time gap tests
new e66c091 Merge branch 'master' into gdevel
new 533ef24 Gap issue with multiple write call seem to be fixed now. Thx Jamie
new 32f7446 Working on all C fortran test, AND James ltd test case, need prints clena up
new 340598d Seems to be working again, all python test fortran and C test pass, including jamie's bug ones
new 8f69b18 Removed a print added tests
new 15d7048 Add debian branch
new 9703015 Add destdir
new 9c83027 refresh patches
new 4fe689b tab, not spaces
new a70313e refresh
new c3bc89b Add versioning patch
new 3fae1c5 Symbols file for version 2.8.0
new 00aa1c8 WIP: add python3 support
new 44bf7eb WIP: python3
new f3adc90 WIP: iterate.
new 33c231a WIP; iterate. Do setup.py.in not setup.py
new 59fa34b WIP: iterate.
new 999b070 WIP: iterate on python3 patch. Disable building python3 mods for the moment
new 67e0aa5 WIP python3: Revert to old-form setup.py call; try again on python3 build
new 7318ae1 WIP: testing python3
new a99298e WIP: Progress: don't use -fPIE. Breaks python
new bca12ea WIP: more python3
new 7272af0 - not _
new eac73ef Fix typo
new 246a26a WIP: testing python3
new 0525734 WIP: more python3
new f64e042 typo
new e601acb Conflict with python*-cmor when testing
new 4345ff9 Its PyInit__cmor not PyInit_cmor
new 46fed47 Ok, enable all tests and pbuild to check
new 9f2c2f8 Don't do all tests
new 8c91e6b Fix for unicode/str
new f59ef9c add --install-layout=deb
new 0888e88 fixed issue with refmax not being set, and fixed issue with checking correctly for longitude axis
new a6ff559 Fixed an error introduced when massively copy pasting cmor_isLongitude
new 0f7f570 Issue: #4 Marks changes with some minor refactoring to seperate out test cases
new addafcb Marks history fix - may have missed some things
new f2be680 message with tests, and removed unecessary code
new d2bcc5f merge in Marks latest fixes
new 241e8c2 Issue #4: tidy test case a little
new 6bbe5a9 Issue #4: fix for '.' at the end of a substring searched for in the history string
new 2fc8ab4 Got the LDFLAGS back into C compile line which adds -lm again which seems to matter on ubuntu 13.10
new 281b42b merged with libm
new aae9e3e Merged in Jamie code
new 211e5f4 Updated Release notes
new 3179848 Tagging 2.9.0
new bee5936 Readying for official 2.9.1
new 763c071 Merge branch 'devel'
new 2e99cb8 Ok should be real 2.9.1
new 27cb211 Prep 2.8.3-1 release
new ce36eb2 refresh patch
new 62f43f7 Fix makefile spaces
new 8f1aa6c Use xz compression
new 115837b Undo python3 for the moment
new c2d98c2 For some reason CFLAGS not getting it
new 22e37ed Merge tag 'CMOR-2.9.1'
new ca0cb57 Test 2.9.1 build
new 43ebbb7 refresh patches
new 2848533 Disable debug-test patch
new 73d38bc 2.9.1-5
new f2945d0 * test against netcdf 4.4.2 for transition. * Standards-Version: 3.9.6. * Update home page * Add Vcs-Git pointing to debian-science URL
new 80c210f Removing ppc64el workaround; apparently problem fixed. Closes: #768136.
The 190 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails. The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.
--
Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-science/packages/cmor.git
More information about the debian-science-commits
mailing list