[pyfai] branch master updated (abd36f5 -> f203959)
Frédéric-Emmanuel Picca
picca at moszumanska.debian.org
Fri Jul 24 12:09:47 UTC 2015
This is an automated email from the git hooks/post-receive script.
picca pushed a change to branch master
in repository pyfai.
from abd36f5 release
new 8b37036 use the pypi redirector and exclude third-party softwares
new f0c1132 fix the copyright
new 7636a93 Imported Upstream version 0.11.0+dfsg
new 62bbead Merge tag 'upstream/0.11.0+dfsg'
new 4707336 refresh the patch series in order to deal with a missing third_party
new 2496d10 fix the build-dep
new 800ca35 fix patch
new 48f2e6f refresh the rules files to unactive the tests
new bba98f3 fix the copyright (typo)
new f203959 release
The 10 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails. The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.
Summary of changes:
CHANGELOG.txt | 102 +-
MANIFEST.in | 59 +-
PKG-INFO | 24 +-
README.txt | 28 +-
TODO.txt | 13 +-
benchmark/benchmark.py | 41 +-
build-deb.sh | 20 +-
calibration/AgBh.D | 62 +-
calibration/Al.D | 8 +
calibration/Au.D | 37 +-
calibration/C14H30O.D | 40 +-
calibration/CeO2.D | 85 +-
calibration/Cr2O3.D | 45 +-
calibration/CrOx.D | 3 +
calibration/CuO.D | 9 +
calibration/LaB6.D | 156 +-
calibration/LaB6_SRM660a.D | 94 +
calibration/LaB6_SRM660b.D | 94 +
calibration/LaB6_SRM660c.D | 94 +
calibration/NaCl.D | 38 +-
calibration/Ni.D | 8 +
calibration/PBBA.D | 24 +-
calibration/Si.D | 34 +-
calibration/Si_SRM640.D | 18 +
calibration/Si_SRM640a.D | 18 +
calibration/Si_SRM640b.D | 18 +
calibration/Si_SRM640c.D | 18 +
calibration/Si_SRM640d.D | 18 +
calibration/Si_SRM640e.D | 18 +
calibration/TiO2.D | 28 +
calibration/ZnO.D | 20 +
calibration/alpha_Al2O3.D | 66 +-
calibration/cristobaltite.D | 31 +
calibration/quartz.D | 22 +
debian/changelog | 14 +
debian/control | 4 +-
debian/copyright | 53 +-
...tream-histogram-build-when-.c-file-is-mis.patch | 34 -
...001-fix-pyFAI-when-third_party-is-missing.patch | 230 +
...r-upstream-skip-test-if-QT4-not-available.patch | 38 -
debian/patches/series | 3 +-
debian/rules | 14 +-
debian/watch | 5 +-
doc/MX-calibrate.1 | 24 +-
doc/MX-calibrate.pdf | Bin 7268 -> 7386 bytes
doc/check_calib.1 | 18 +-
doc/check_calib.pdf | Bin 4435 -> 4188 bytes
doc/detector2nexus.1 | 8 +-
doc/detector2nexus.pdf | Bin 4273 -> 4266 bytes
doc/diff_tomo.1 | 11 +-
doc/diff_tomo.pdf | Bin 4990 -> 5773 bytes
doc/drawMask_pymca.1 | 8 +-
doc/drawMask_pymca.pdf | Bin 3989 -> 4019 bytes
doc/eiger-mask.1 | 13 +
doc/eiger-mask.pdf | Bin 0 -> 3182 bytes
doc/pyFAI-average.1 | 13 +-
doc/pyFAI-average.pdf | Bin 4479 -> 4593 bytes
doc/pyFAI-calib.1 | 35 +-
doc/pyFAI-calib.pdf | Bin 8635 -> 9023 bytes
doc/pyFAI-integrate.1 | 10 +-
doc/pyFAI-integrate.pdf | Bin 4551 -> 4483 bytes
doc/pyFAI-recalib.1 | 48 +-
doc/pyFAI-recalib.pdf | Bin 9054 -> 9362 bytes
doc/pyFAI-saxs.1 | 6 +-
doc/pyFAI-saxs.pdf | Bin 4728 -> 4728 bytes
doc/pyFAI-waxs.1 | 8 +-
doc/pyFAI-waxs.pdf | Bin 5667 -> 5657 bytes
doc/pyFAI.pdf | Bin 1062868 -> 1478137 bytes
doc/refine_wavelength.1 | 10 -
doc/refine_wavelength.pdf | Bin 3586 -> 0 bytes
doc/source/calibration.rst | 119 +-
doc/source/changelog.rst | 178 +
doc/source/conf.py | 112 +-
doc/source/design/ai.rst | 154 +
doc/source/design/index.rst | 17 +
doc/source/detector.rst | 84 +
doc/source/ecosystem.rst | 146 +
doc/source/geometry.rst | 101 +
doc/source/img/PONI.png | Bin 0 -> 37820 bytes
doc/source/index.rst | 36 +-
doc/source/man/MX-calibrate.rst | 84 +-
doc/source/man/check_calib.rst | 34 +-
doc/source/man/detector2nexus.rst | 45 +
doc/source/man/diff_tomo.rst | 49 +-
doc/source/man/drawMask_pymca.rst | 3 +
doc/source/man/pyFAI-average.rst | 31 +-
doc/source/man/pyFAI-calib.rst | 123 +-
doc/source/man/pyFAI-integrate.rst | 9 +-
doc/source/man/pyFAI-recalib.rst | 122 +-
doc/source/man/pyFAI-saxs.rst | 8 +-
doc/source/man/pyFAI-waxs.rst | 17 +-
doc/source/man/scripts.rst | 3 +-
doc/source/operations/index.rst | 106 +
doc/source/operations/linux.rst | 39 +
doc/source/operations/macosx.rst | 61 +
doc/source/operations/windows.rst | 136 +
doc/source/project.rst | 104 +-
doc/source/pyFAI.rst | 28 +-
doc/source/usage/cookbook/calibrate.rst | 73 +
doc/source/usage/cookbook/index.rst | 16 +
.../usage/cookbook/integration_with_python.rst | 1 +
.../usage/cookbook/integration_with_scripts.rst | 1 +
.../usage/cookbook/integration_with_the_gui.rst | 76 +
doc/source/usage/tutorial/index.rst | 2 +
openCL/bitonic.cl | 529 +
openCL/bsort.cl | 261 +
openCL/for_eclipse.h | 22 +
openCL/ocl_azim_CSR.cl | 100 +-
openCL/ocl_azim_LUT.cl | 2 +
openCL/ocl_azim_kernel2d_2.cl | 3 +
openCL/ocl_azim_kernel_2.cl | 9 +-
openCL/ocl_bispev.cl | 3 +
openCL/ocl_hist_pixelsplit.cl | 4 +-
openCL/{ocl_hist_pixelsplit.cl => ocl_lut.cl} | 283 +-
openCL/ocl_lut_pixelsplit.cl | 34 +-
openCL/ocl_lut_pixelsplit2.cl | 3 +-
openCL/ocl_lut_pixelsplit3.cl | 4 +-
openCL/ocl_lut_pixelsplit_test.cl | 4 +-
openCL/preprocess.cl | 2 +
openCL/reduction_test.cl | 4 +
openCL/reduction_test4.cl | 2 +
pyFAI-src/OCLFullSplit.py | 364 +
pyFAI-src/OCLFullSplit1D_template.py | 146 +
pyFAI-src/__init__.py | 12 +-
pyFAI-src/_version.py | 74 +
pyFAI-src/argparse.py | 2353 --
pyFAI-src/azimuthalIntegrator.py | 520 +-
pyFAI-src/blob_detection.py | 47 +-
pyFAI-src/calibrant.py | 296 +-
pyFAI-src/calibration.py | 847 +-
pyFAI-src/detectors.py | 932 +-
pyFAI-src/directories.py | 39 +-
pyFAI-src/distortion.py | 144 +-
pyFAI-src/geometry.py | 227 +-
pyFAI-src/geometryRefinement.py | 167 +-
pyFAI-src/grid.py | 92 +
pyFAI-src/gui_utils.py | 3 +-
pyFAI-src/integrate_widget.py | 197 +-
pyFAI-src/io.py | 98 +-
pyFAI-src/massif.py | 34 +-
pyFAI-src/multi_geometry.py | 176 +
pyFAI-src/ocl_azim_csr.py | 72 +-
pyFAI-src/ocl_azim_csr_dis.py | 9 +-
pyFAI-src/ocl_azim_lut.py | 53 +-
pyFAI-src/ocl_hist_pixelsplit.py | 6 +-
pyFAI-src/opencl.py | 43 +-
pyFAI-src/peak_picker.py | 230 +-
pyFAI-src/refinment2D.py | 6 +-
pyFAI-src/spline.py | 120 +-
pyFAI-src/units.py | 33 +-
pyFAI-src/utils.py | 349 +-
pyFAI-src/worker.py | 125 +-
pyFAI.egg-info/PKG-INFO | 28 +
pyFAI.egg-info/SOURCES.txt | 323 +
pyFAI.egg-info/dependency_links.txt | 1 +
pyFAI.egg-info/top_level.txt | 23 +
scripts/check_calib | 14 +-
scripts/detector2nexus | 6 +-
scripts/diff_tomo | 241 +-
scripts/drawMask_pymca | 8 +-
scripts/eiger-mask | 75 +
scripts/pyFAI-average | 26 +-
scripts/pyFAI-calib | 2 +-
scripts/pyFAI-integrate | 25 +-
scripts/pyFAI-saxs | 35 +-
scripts/pyFAI-waxs | 42 +-
setup.cfg | 13 +-
setup.py | 320 +-
src/_bispev.c | 12533 +++----
src/_bispev.pyx | 129 +-
src/_blob.c | 12928 +++----
src/_convolution.c | 11499 ++++---
src/_distortion.c | 28142 ++++++++-------
src/_distortion.pyx | 96 +-
src/_distortionCSR.c | 18959 ++++++-----
src/_distortionCSR.pyx | 2 +-
src/_geometry.c | 15316 +++++----
src/_geometry.pyx | 294 +-
src/bilinear.c | 24405 ++++++-------
src/bilinear.pxi | 199 +
src/bilinear.pyx | 307 +-
src/fastcrc.c | 3525 +-
src/histogram.c | 1386 +-
src/histogram.pyx | 241 +-
src/histogram_nomp.c | 21067 ------------
src/{histogram_nomp.pyx => histogram_nomp.pxi} | 31 +-
src/histogram_omp.c | 21652 ------------
src/{histogram_omp.pyx => histogram_omp.pxi} | 32 +-
src/marchingsquares.c | 13114 +++----
src/morphology.c | 11023 +++---
src/numpy_common.pxi | 11 +
src/paraSplitBBox.pyx | 36 +-
src/reconstruct.c | 11071 +++---
src/{fastcrc.pyx => regrid_common.pxi} | 36 +-
src/relabel.c | 11300 +++---
src/sparse_csr.c | 11213 +++---
src/splitBBox.c | 17041 ++++-----
src/splitBBox.pyx | 78 +-
src/splitBBoxCSR.c | 6310 ++--
src/splitBBoxCSR.pyx | 139 +-
src/splitBBoxLUT.c | 27490 ++++++++-------
src/splitBBoxLUT.pyx | 151 +-
src/splitBBoxLUT_vector.c | 23845 +++++++------
src/splitBBoxLUT_vector.pyx | 118 +-
src/splitPixel.c | 17807 +++++-----
src/splitPixel.pyx | 123 +-
src/splitPixelFull.c | 22465 +++++++-----
src/splitPixelFull.pyx | 565 +-
src/splitPixelFullCSR.c | 15578 +++++++--
src/splitPixelFullCSR.pyx | 1468 +-
src/splitPixelFullLUT.c | 26194 +++++++++-----
src/splitPixelFullLUT.pyx | 1017 +-
src/splitPixelFullLUT_b.c | 16715 ++++-----
src/splitPixelFullLUT_b.pyx | 105 +-
src/splitPixelFullLUT_double.c | 18739 +++++-----
src/splitPixelFullLUT_double.pyx | 274 +-
src/splitPixelFullLUT_float32_b.c | 16800 ++++-----
src/splitPixelFullLUT_float32_b.pyx | 130 +-
src/watershed.c | 34116 +++++++++++++++++++
src/watershed.pyx | 576 +
src/xutils.c | 4859 ++-
test/__init__.py | 58 +
test/all_testimages.json | 1 +
test/blob.py | 132 +
test/bug-1280.py | 21 +
test/bug_ocl_cpu.py | 5 +
test/check_calib.py | 188 +
test/chi_square.py | 60 +
test/chi_square_ds8.py | 72 +
test/debug_ocl_sort.py | 30 +
test/debug_split_pixel.py | 22 +
test/example.sp | 111 -
test/fai_cfg.json | 4 +
test/lima_cfg.json | 1 +
test/mactrace.py | 55 +
test/memleak.py | 66 +
test/profileDistortionCSR.py | 144 +
test/profile_OCLFullSplit.py | 39 +
test/profile_csr.py | 64 +
test/profile_csr_2d.py | 39 +
test/profile_csr_all_platforms.py | 68 +
test/profile_csr_fullsplit.py | 45 +
test/profile_csr_padded_csr.py | 127 +
test/profile_hdf5.py | 88 +
test/profile_lut_pixelsplitFull.py | 203 +
test/profile_ocl_hist_pixelsplit.py | 127 +
test/{test_ocl_lut.py => profile_ocl_lut.py} | 30 +-
test/profile_ocl_lut_pixelsplit.py | 209 +
test/profile_ocl_lut_pixelsplit2.py | 188 +
test/profile_ocl_lut_pixelsplit3.py | 169 +
test/profile_pixelsplitFull.py | 207 +
test/profile_pixelsplitFullLUT.py | 124 +
test/profile_pixelsplitFullLUT2.py | 126 +
test/profile_splitPixelFullLUT.py | 60 +
test/splitpixel_vs_splitpixelfull.py | 20 +
test/test_all.py | 76 +-
test/test_azimuthal_integrator.py | 136 +-
test/test_bilinear.py | 64 +-
test/test_bispev.py | 33 +-
test/test_blob_detection.py | 12 +-
test/test_bug_regression.py | 95 +
test/test_calibrant.py | 69 +-
test/test_convolution.py | 21 +-
test/test_csr.py | 19 +-
test/test_detector.py | 104 +-
test/test_distortion.py | 12 +-
test/{test_marchingsquares.py => test_dummy.py} | 42 +-
test/test_export.py | 8 +-
test/test_flat.py | 15 +-
test/test_geometry.py | 7 +-
test/test_geometry_refinement.py | 146 +-
test/test_histogram.py | 33 +-
test/test_integrate.py | 17 +-
test/test_io.py | 15 +-
test/test_marchingsquares.py | 7 +-
test/test_mask.py | 167 +-
test/test_multi_geometry.py | 125 +
test/test_openCL.py | 149 +-
test/test_peak_picking.py | 55 +-
test/test_polarization.py | 15 +-
test/test_saxs.py | 7 +-
test/test_sparse.py | 5 +-
test/test_split_pixel.py | 10 +-
test/test_utils.py | 77 +-
.../{test_marchingsquares.py => test_watershed.py} | 57 +-
test/testimages/Fairchild.edf | 200 -
test/testimages/Frelon2k.edf | Bin 8389632 -> 0 bytes
test/testimages/LaB6_0020.edf | Bin 4198400 -> 0 bytes
test/testimages/LaB6_260210.mar3450 | Bin 7473209 -> 0 bytes
test/testimages/Pilatus1M.edf | Bin 4093756 -> 0 bytes
test/testimages/Pilatus6M.cbf | Bin 6230840 -> 0 bytes
test/testimages/fit2d.dat | 1155 -
test/testimages/frelon.spline | 111 -
test/testimages/halfccd.edf | Bin 4198400 -> 0 bytes
test/testimages/halfccd.fit2d.edf | Bin 8389632 -> 0 bytes
test/testimages/halfccd.spline | 29 -
test/testimages/moke.tif | Bin 300356 -> 0 bytes
test/testimages/powder_200_2_0001.cbf | Bin 6240756 -> 0 bytes
test/testimages/powder_200_2_0001.chi | 1770 -
test/testimages/testMask.edf | Bin 4093244 -> 0 bytes
test/utilstest.py | 261 +-
301 files changed, 274265 insertions(+), 231395 deletions(-)
create mode 100644 calibration/Al.D
create mode 100644 calibration/CuO.D
create mode 100644 calibration/LaB6_SRM660a.D
create mode 100644 calibration/LaB6_SRM660b.D
create mode 100644 calibration/LaB6_SRM660c.D
create mode 100644 calibration/Ni.D
create mode 100644 calibration/Si_SRM640.D
create mode 100644 calibration/Si_SRM640a.D
create mode 100644 calibration/Si_SRM640b.D
create mode 100644 calibration/Si_SRM640c.D
create mode 100644 calibration/Si_SRM640d.D
create mode 100644 calibration/Si_SRM640e.D
create mode 100644 calibration/TiO2.D
create mode 100644 calibration/ZnO.D
create mode 100644 calibration/cristobaltite.D
create mode 100644 calibration/quartz.D
delete mode 100644 debian/patches/0001-fix-for-upstream-histogram-build-when-.c-file-is-mis.patch
create mode 100644 debian/patches/0001-fix-pyFAI-when-third_party-is-missing.patch
delete mode 100644 debian/patches/0002-fix-for-upstream-skip-test-if-QT4-not-available.patch
create mode 100644 doc/eiger-mask.1
create mode 100644 doc/eiger-mask.pdf
delete mode 100644 doc/refine_wavelength.1
delete mode 100644 doc/refine_wavelength.pdf
create mode 100644 doc/source/changelog.rst
create mode 100644 doc/source/design/ai.rst
create mode 100644 doc/source/design/index.rst
create mode 100644 doc/source/detector.rst
create mode 100644 doc/source/ecosystem.rst
create mode 100644 doc/source/geometry.rst
create mode 100644 doc/source/img/PONI.png
create mode 100644 doc/source/man/detector2nexus.rst
create mode 100644 doc/source/operations/index.rst
create mode 100644 doc/source/operations/linux.rst
create mode 100644 doc/source/operations/macosx.rst
create mode 100644 doc/source/operations/windows.rst
create mode 100644 doc/source/usage/cookbook/calibrate.rst
create mode 100644 doc/source/usage/cookbook/index.rst
create mode 100644 doc/source/usage/cookbook/integration_with_python.rst
create mode 100644 doc/source/usage/cookbook/integration_with_scripts.rst
create mode 100644 doc/source/usage/cookbook/integration_with_the_gui.rst
create mode 100644 doc/source/usage/tutorial/index.rst
create mode 100644 openCL/bitonic.cl
create mode 100644 openCL/bsort.cl
create mode 100644 openCL/for_eclipse.h
copy openCL/{ocl_hist_pixelsplit.cl => ocl_lut.cl} (54%)
create mode 100644 pyFAI-src/OCLFullSplit.py
create mode 100644 pyFAI-src/OCLFullSplit1D_template.py
create mode 100644 pyFAI-src/_version.py
delete mode 100644 pyFAI-src/argparse.py
create mode 100644 pyFAI-src/grid.py
create mode 100644 pyFAI-src/multi_geometry.py
create mode 100644 pyFAI.egg-info/PKG-INFO
create mode 100644 pyFAI.egg-info/SOURCES.txt
create mode 100644 pyFAI.egg-info/dependency_links.txt
create mode 100644 pyFAI.egg-info/top_level.txt
create mode 100755 scripts/eiger-mask
create mode 100644 src/bilinear.pxi
delete mode 100644 src/histogram_nomp.c
rename src/{histogram_nomp.pyx => histogram_nomp.pxi} (90%)
delete mode 100644 src/histogram_omp.c
rename src/{histogram_omp.pyx => histogram_omp.pxi} (92%)
create mode 100644 src/numpy_common.pxi
copy src/{fastcrc.pyx => regrid_common.pxi} (60%)
create mode 100644 src/watershed.c
create mode 100644 src/watershed.pyx
create mode 100644 test/all_testimages.json
create mode 100644 test/blob.py
create mode 100755 test/bug-1280.py
create mode 100755 test/bug_ocl_cpu.py
create mode 100755 test/check_calib.py
create mode 100755 test/chi_square.py
create mode 100755 test/chi_square_ds8.py
create mode 100644 test/debug_ocl_sort.py
create mode 100644 test/debug_split_pixel.py
delete mode 100644 test/example.sp
create mode 100644 test/fai_cfg.json
create mode 100644 test/lima_cfg.json
create mode 100644 test/mactrace.py
create mode 100644 test/memleak.py
create mode 100644 test/profileDistortionCSR.py
create mode 100644 test/profile_OCLFullSplit.py
create mode 100644 test/profile_csr.py
create mode 100644 test/profile_csr_2d.py
create mode 100644 test/profile_csr_all_platforms.py
create mode 100644 test/profile_csr_fullsplit.py
create mode 100644 test/profile_csr_padded_csr.py
create mode 100755 test/profile_hdf5.py
create mode 100644 test/profile_lut_pixelsplitFull.py
create mode 100644 test/profile_ocl_hist_pixelsplit.py
rename test/{test_ocl_lut.py => profile_ocl_lut.py} (81%)
create mode 100644 test/profile_ocl_lut_pixelsplit.py
create mode 100644 test/profile_ocl_lut_pixelsplit2.py
create mode 100644 test/profile_ocl_lut_pixelsplit3.py
create mode 100644 test/profile_pixelsplitFull.py
create mode 100644 test/profile_pixelsplitFullLUT.py
create mode 100644 test/profile_pixelsplitFullLUT2.py
create mode 100644 test/profile_splitPixelFullLUT.py
create mode 100644 test/splitpixel_vs_splitpixelfull.py
create mode 100644 test/test_bug_regression.py
copy test/{test_marchingsquares.py => test_dummy.py} (55%)
create mode 100644 test/test_multi_geometry.py
copy test/{test_marchingsquares.py => test_watershed.py} (55%)
delete mode 100644 test/testimages/Fairchild.edf
delete mode 100644 test/testimages/Frelon2k.edf
delete mode 100644 test/testimages/LaB6_0020.edf
delete mode 100644 test/testimages/LaB6_260210.mar3450
delete mode 100644 test/testimages/Pilatus1M.edf
delete mode 100644 test/testimages/Pilatus6M.cbf
delete mode 100644 test/testimages/fit2d.dat
delete mode 100644 test/testimages/frelon.spline
delete mode 100644 test/testimages/halfccd.edf
delete mode 100644 test/testimages/halfccd.fit2d.edf
delete mode 100644 test/testimages/halfccd.spline
delete mode 100644 test/testimages/moke.tif
delete mode 100644 test/testimages/powder_200_2_0001.cbf
delete mode 100644 test/testimages/powder_200_2_0001.chi
delete mode 100644 test/testimages/testMask.edf
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