[vistrails] 05/06: Merge tag 'upstream_2.2'

Alastair McKinstry mckinstry at moszumanska.debian.org
Mon Jun 8 14:37:20 UTC 2015


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mckinstry pushed a commit to branch master
in repository vistrails.

commit d9c0ce96b2c7a4e3a6ef0952180d5e20fedb3d73
Merge: 2d6d949 464132b
Author: Alastair McKinstry <mckinstry at debian.org>
Date:   Mon Jun 8 14:13:22 2015 +0100

    Merge tag 'upstream_2.2'

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 vistrails/db/versions/v0_9_5/domain/id_scope.py    |     37 +-
 vistrails/db/versions/v0_9_5/domain/log.py         |     37 +-
 vistrails/db/versions/v0_9_5/domain/registry.py    |     37 +-
 vistrails/db/versions/v0_9_5/domain/vistrail.py    |     37 +-
 vistrails/db/versions/v0_9_5/domain/workflow.py    |     37 +-
 .../db/versions/v0_9_5/persistence/__init__.py     |     37 +-
 .../db/versions/v0_9_5/persistence/sql/__init__.py |     37 +-
 .../db/versions/v0_9_5/persistence/sql/auto_gen.py |     37 +-
 .../db/versions/v0_9_5/persistence/sql/sql_dao.py  |     47 +-
 .../db/versions/v0_9_5/persistence/xml/__init__.py |     37 +-
 .../db/versions/v0_9_5/persistence/xml/auto_gen.py |     37 +-
 .../db/versions/v0_9_5/persistence/xml/xml_dao.py  |     46 +-
 .../db/versions/v0_9_5/schemas/sql/vistrails.sql   |     35 +-
 .../versions/v0_9_5/schemas/sql/vistrails_drop.sql |     35 +-
 .../db/versions/v0_9_5/schemas/xml/vistrail.xsd    |     33 +-
 vistrails/db/versions/v0_9_5/specs/all.xml         |     35 +-
 vistrails/db/versions/v0_9_5/translate/__init__.py |     37 +-
 vistrails/db/versions/v0_9_5/translate/v0_9_4.py   |     37 +-
 vistrails/db/versions/v0_9_5/translate/v1_0_0.py   |     37 +-
 vistrails/db/versions/v1_0_0/__init__.py           |     37 +-
 vistrails/db/versions/v1_0_0/domain/__init__.py    |     37 +-
 vistrails/db/versions/v1_0_0/domain/auto_gen.py    |     37 +-
 vistrails/db/versions/v1_0_0/domain/id_scope.py    |     37 +-
 vistrails/db/versions/v1_0_0/domain/log.py         |     37 +-
 vistrails/db/versions/v1_0_0/domain/registry.py    |     37 +-
 vistrails/db/versions/v1_0_0/domain/vistrail.py    |     37 +-
 vistrails/db/versions/v1_0_0/domain/workflow.py    |     37 +-
 .../db/versions/v1_0_0/persistence/__init__.py     |     37 +-
 .../db/versions/v1_0_0/persistence/sql/__init__.py |     37 +-
 .../db/versions/v1_0_0/persistence/sql/auto_gen.py |     37 +-
 .../db/versions/v1_0_0/persistence/sql/sql_dao.py  |     47 +-
 .../db/versions/v1_0_0/persistence/xml/__init__.py |     37 +-
 .../db/versions/v1_0_0/persistence/xml/auto_gen.py |     37 +-
 .../db/versions/v1_0_0/persistence/xml/xml_dao.py  |     46 +-
 .../db/versions/v1_0_0/schemas/sql/vistrails.sql   |     35 +-
 .../versions/v1_0_0/schemas/sql/vistrails_drop.sql |     35 +-
 .../db/versions/v1_0_0/schemas/xml/vistrail.xsd    |     33 +-
 vistrails/db/versions/v1_0_0/specs/all.xml         |     35 +-
 vistrails/db/versions/v1_0_0/translate/__init__.py |     37 +-
 vistrails/db/versions/v1_0_0/translate/v0_9_5.py   |     37 +-
 vistrails/db/versions/v1_0_0/translate/v1_0_1.py   |     37 +-
 vistrails/db/versions/v1_0_1/__init__.py           |     37 +-
 vistrails/db/versions/v1_0_1/domain/__init__.py    |     37 +-
 vistrails/db/versions/v1_0_1/domain/auto_gen.py    |     37 +-
 vistrails/db/versions/v1_0_1/domain/id_scope.py    |     37 +-
 vistrails/db/versions/v1_0_1/domain/log.py         |     37 +-
 vistrails/db/versions/v1_0_1/domain/registry.py    |     37 +-
 vistrails/db/versions/v1_0_1/domain/vistrail.py    |     37 +-
 vistrails/db/versions/v1_0_1/domain/workflow.py    |     37 +-
 .../db/versions/v1_0_1/persistence/__init__.py     |     37 +-
 .../db/versions/v1_0_1/persistence/sql/__init__.py |     37 +-
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 .../db/versions/v1_0_1/persistence/xml/auto_gen.py |     37 +-
 .../db/versions/v1_0_1/persistence/xml/xml_dao.py  |     46 +-
 .../db/versions/v1_0_1/schemas/sql/vistrails.sql   |     35 +-
 .../versions/v1_0_1/schemas/sql/vistrails_drop.sql |     35 +-
 .../db/versions/v1_0_1/schemas/xml/vistrail.xsd    |     33 +-
 .../db/versions/v1_0_1/schemas/xml/vtlink.xsd      |     33 +-
 vistrails/db/versions/v1_0_1/specs/all.xml         |     35 +-
 vistrails/db/versions/v1_0_1/translate/__init__.py |     37 +-
 vistrails/db/versions/v1_0_1/translate/v1_0_0.py   |     37 +-
 vistrails/db/versions/v1_0_1/translate/v1_0_2.py   |     37 +-
 vistrails/db/versions/v1_0_2/__init__.py           |     37 +-
 vistrails/db/versions/v1_0_2/domain/__init__.py    |     37 +-
 vistrails/db/versions/v1_0_2/domain/auto_gen.py    |     37 +-
 vistrails/db/versions/v1_0_2/domain/id_scope.py    |     37 +-
 vistrails/db/versions/v1_0_2/domain/log.py         |     37 +-
 vistrails/db/versions/v1_0_2/domain/registry.py    |     37 +-
 vistrails/db/versions/v1_0_2/domain/vistrail.py    |     37 +-
 vistrails/db/versions/v1_0_2/domain/workflow.py    |     37 +-
 .../db/versions/v1_0_2/persistence/__init__.py     |     37 +-
 .../db/versions/v1_0_2/persistence/sql/__init__.py |     37 +-
 .../db/versions/v1_0_2/persistence/sql/auto_gen.py |     37 +-
 .../db/versions/v1_0_2/persistence/sql/sql_dao.py  |     49 +-
 .../db/versions/v1_0_2/persistence/xml/__init__.py |     37 +-
 .../db/versions/v1_0_2/persistence/xml/auto_gen.py |     37 +-
 .../db/versions/v1_0_2/persistence/xml/xml_dao.py  |     46 +-
 .../db/versions/v1_0_2/schemas/sql/vistrails.sql   |     35 +-
 .../versions/v1_0_2/schemas/sql/vistrails_drop.sql |     35 +-
 vistrails/db/versions/v1_0_2/schemas/xml/log.xsd   |     33 +-
 .../db/versions/v1_0_2/schemas/xml/vistrail.xsd    |     33 +-
 .../db/versions/v1_0_2/schemas/xml/vtlink.xsd      |     33 +-
 .../db/versions/v1_0_2/schemas/xml/workflow.xsd    |     33 +-
 vistrails/db/versions/v1_0_2/specs/all.xml         |     35 +-
 vistrails/db/versions/v1_0_2/translate/__init__.py |     37 +-
 vistrails/db/versions/v1_0_2/translate/v1_0_1.py   |     37 +-
 vistrails/db/versions/v1_0_2/translate/v1_0_3.py   |     39 +-
 vistrails/db/versions/v1_0_3/__init__.py           |     37 +-
 vistrails/db/versions/v1_0_3/domain/__init__.py    |     37 +-
 vistrails/db/versions/v1_0_3/domain/auto_gen.py    |  23907 ++--
 vistrails/db/versions/v1_0_3/domain/id_scope.py    |     37 +-
 vistrails/db/versions/v1_0_3/domain/log.py         |     37 +-
 vistrails/db/versions/v1_0_3/domain/registry.py    |     37 +-
 vistrails/db/versions/v1_0_3/domain/vistrail.py    |     37 +-
 vistrails/db/versions/v1_0_3/domain/workflow.py    |     37 +-
 .../db/versions/v1_0_3/persistence/__init__.py     |     37 +-
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 .../db/versions/v1_0_3/schemas/sql/vistrails.sql   |    499 +-
 .../versions/v1_0_3/schemas/sql/vistrails_drop.sql |     37 +-
 vistrails/db/versions/v1_0_3/schemas/xml/log.xsd   |     35 +-
 .../db/versions/v1_0_3/schemas/xml/vistrail.xsd    |     36 +-
 .../db/versions/v1_0_3/schemas/xml/vtlink.xsd      |     33 +-
 .../db/versions/v1_0_3/schemas/xml/workflow.xsd    |     35 +-
 vistrails/db/versions/v1_0_3/specs/all.xml         |    218 +-
 vistrails/db/versions/v1_0_3/translate/__init__.py |     37 +-
 vistrails/db/versions/v1_0_3/translate/v1_0_2.py   |     61 +-
 vistrails/db/versions/v1_0_3/translate/v1_0_4.py   |    106 +
 vistrails/db/versions/v1_0_4/__init__.py           |     39 +
 vistrails/db/versions/v1_0_4/domain/__init__.py    |     44 +
 vistrails/db/versions/v1_0_4/domain/auto_gen.py    |  18687 +++
 vistrails/db/versions/v1_0_4/domain/id_scope.py    |     88 +
 vistrails/db/versions/v1_0_4/domain/log.py         |     75 +
 vistrails/db/versions/v1_0_4/domain/registry.py    |     66 +
 vistrails/db/versions/v1_0_4/domain/vistrail.py    |    223 +
 vistrails/db/versions/v1_0_4/domain/workflow.py    |    175 +
 .../db/versions/v1_0_4/persistence/__init__.py     |    475 +
 .../db/versions/v1_0_4/persistence/sql/__init__.py |     39 +
 .../db/versions/v1_0_4/persistence/sql/auto_gen.py |   8352 ++
 .../db/versions/v1_0_4/persistence/sql/sql_dao.py  |    262 +
 .../db/versions/v1_0_4/persistence/xml/__init__.py |     39 +
 .../db/versions/v1_0_4/persistence/xml/auto_gen.py |   6509 +
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 vistrails/db/versions/v1_0_4/schemas/xml/log.xsd   |    157 +
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 vistrails/db/versions/v1_0_4/specs/all.xml         |   4139 +
 vistrails/db/versions/v1_0_4/translate/__init__.py |     39 +
 vistrails/db/versions/v1_0_4/translate/v1_0_3.py   |    483 +
 vistrails/gui/__init__.py                          |     35 +-
 vistrails/gui/application.py                       |    310 +-
 vistrails/gui/application_server.py                |    457 +-
 vistrails/gui/base_view.py                         |     37 +-
 vistrails/gui/bundles/__init__.py                  |     35 +-
 vistrails/gui/bundles/installbundle.py             |    135 +-
 vistrails/gui/bundles/linux_debian_install.py      |     59 +-
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 vistrails/gui/configuration.py                     |   1109 +-
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 vistrails/gui/extras/__init__.py                   |     37 +-
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 vistrails/gui/extras/core/db/locator.py            |     47 +-
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 vistrails/gui/job_monitor.py                       |    755 +-
 vistrails/gui/mashups/__init__.py                  |     37 +-
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 vistrails/gui/mashups/mashup_app.py                |    197 +-
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 vistrails/gui/mashups/mashups_inspector.py         |     37 +-
 vistrails/gui/mashups/mashups_manager.py           |     53 +-
 vistrails/gui/mashups/mashups_widgets.py           |     48 +-
 vistrails/gui/merge_gui.py                         |     39 +-
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 vistrails/gui/module_configuration.py              |     72 +-
 vistrails/gui/module_documentation.py              |     54 +-
 vistrails/gui/module_info.py                       |    163 +-
 vistrails/gui/module_options.py                    |    536 +
 vistrails/gui/module_palette.py                    |    222 +-
 vistrails/gui/modules/__init__.py                  |     64 +-
 vistrails/gui/modules/constant_configuration.py    |    927 +-
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 vistrails/gui/modules/module_configure.py          |     37 +-
 vistrails/gui/modules/output_configuration.py      |    414 +
 vistrails/gui/modules/paramexplore.py              |     63 +-
 vistrails/gui/modules/python_source_configure.py   |     41 +-
 vistrails/gui/modules/query_configuration.py       |     37 +-
 vistrails/gui/modules/resources/__init__.py        |     37 +-
 vistrails/gui/modules/resources/colorconfig.qrc    |      5 +
 vistrails/gui/modules/resources/colorconfig_rc.py  |     43 +-
 vistrails/gui/modules/resources/colorwheel.png     |    Bin 0 -> 28526 bytes
 vistrails/gui/modules/source_configure.py          |     63 +-
 vistrails/gui/modules/string_configure.py          |     40 +-
 .../gui/modules/stringformat_configuration.py      |    124 +
 vistrails/gui/modules/tuple_configuration.py       |     82 +-
 vistrails/gui/modules/utils.py                     |     96 +
 vistrails/gui/open_db_window.py                    |     79 +-
 vistrails/gui/paramexplore/__init__.py             |     37 +-
 vistrails/gui/paramexplore/param_view.py           |     98 +-
 vistrails/gui/paramexplore/pe_inspector.py         |     52 +-
 vistrails/gui/paramexplore/pe_pipeline.py          |     46 +-
 vistrails/gui/paramexplore/pe_tab.py               |     55 +-
 vistrails/gui/paramexplore/pe_table.py             |    109 +-
 vistrails/gui/paramexplore/pe_view.py              |     42 +-
 vistrails/gui/paramexplore/virtual_cell.py         |     57 +-
 vistrails/gui/pipeline_view.py                     |    803 +-
 vistrails/gui/pipeline_view_select.py              |     47 +-
 vistrails/gui/port_documentation.py                |     37 +-
 vistrails/gui/ports_pane.py                        |    233 +-
 vistrails/gui/preferences.py                       |    301 +-
 vistrails/gui/publishing.py                        |     41 +-
 vistrails/gui/qt.py                                |     77 +-
 vistrails/gui/query_view.py                        |     80 +-
 vistrails/gui/repository.py                        |     73 +-
 vistrails/gui/requirements.py                      |     62 +-
 vistrails/gui/resources/__init__.py                |     37 +-
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 vistrails/gui/resources/macroicons_rc.py           |     37 +-
 vistrails/gui/shell.py                             |    948 +-
 vistrails/gui/theme.py                             |     71 +-
 vistrails/gui/utils.py                             |     39 +-
 vistrails/gui/variable_dropbox.py                  |     44 +-
 vistrails/gui/version_prop.py                      |    237 +-
 vistrails/gui/version_view.py                      |    201 +-
 vistrails/gui/view_manager.py                      |    903 -
 vistrails/gui/vis_diff.py                          |    130 +-
 vistrails/gui/vistrail_controller.py               |    639 +-
 vistrails/gui/vistrail_variables.py                |     38 +-
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 vistrails/gui/vistrails_window.py                  |    325 +-
 vistrails/index/__core.py                          |    143 -
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 vistrails/index/indexworkflow.py                   |    226 -
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 vistrails/index/vistrailanalyzer.py                |    116 -
 vistrails/packages/CLTools/README                  |     73 -
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 .../packages/CLTools/test_files/test_script_1.py   |      4 +
 vistrails/packages/CLTools/wizard.py               |     87 +-
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 vistrails/packages/HTTP/init.py                    |    539 -
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 vistrails/packages/JobSubmission/__init__.py       |     34 -
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 vistrails/packages/JobSubmission/init.py           |    315 -
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 vistrails/packages/RemoteQ/README                  |      2 +
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 vistrails/packages/RemoteQ/hdfs.py                 |    193 +
 vistrails/packages/RemoteQ/init.py                 |    549 +
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 vistrails/packages/SUDSWebServices/__init__.py     |     37 +-
 vistrails/packages/SUDSWebServices/init.py         |    126 +-
 vistrails/packages/URL/__init__.py                 |     49 +
 vistrails/packages/URL/http_directory.py           |    215 +
 vistrails/packages/URL/https.py                    |    109 +
 vistrails/packages/URL/https_if_available.py       |     61 +
 vistrails/packages/URL/identifiers.py              |     53 +
 vistrails/packages/URL/init.py                     |    735 +
 vistrails/packages/__init__.py                     |     37 +-
 vistrails/packages/analytics/__init__.py           |     37 +-
 vistrails/packages/analytics/init.py               |     62 +-
 vistrails/packages/controlflow/__init__.py         |     39 +-
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 vistrails/packages/dialogs/__init__.py             |     50 +-
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 vistrails/packages/gmaps/__init__.py               |     55 +
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 vistrails/packages/matplotlib/__init__.py          |     40 +-
 vistrails/packages/matplotlib/artists.py           |   4877 +-
 .../packages/matplotlib/artists_template.py.mako   |    119 +-
 vistrails/packages/matplotlib/bases.py             |    314 +-
 vistrails/packages/matplotlib/diff.py              |    119 +-
 vistrails/packages/matplotlib/figure_cell.py       |    140 +-
 vistrails/packages/matplotlib/generate.py          |     39 +
 vistrails/packages/matplotlib/identifiers.py       |     41 +-
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 vistrails/packages/matplotlib/mixins.py            |     48 +-
 vistrails/packages/matplotlib/mpl_artists.xml      |     35 +-
 vistrails/packages/matplotlib/mpl_artists_diff.xml |     99 +
 vistrails/packages/matplotlib/mpl_plots.xml        |    468 +-
 vistrails/packages/matplotlib/mpl_plots_diff.xml   |    408 +-
 vistrails/packages/matplotlib/mpl_plots_raw.xml    |    524 +-
 vistrails/packages/matplotlib/object.py            |     20 -
 vistrails/packages/matplotlib/parse.py             |    235 +-
 vistrails/packages/matplotlib/plots.py             |   3065 +-
 .../packages/matplotlib/plots_template.py.mako     |     58 +-
 vistrails/packages/matplotlib/specs.py             |     96 +-
 vistrails/packages/matplotlib/update.py            |     38 +-
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 vistrails/packages/parallelflow/__init__.py        |     38 +
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 vistrails/packages/persistence/__init__.py         |     37 +-
 vistrails/packages/persistence/compute_hash.py     |     37 +-
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 vistrails/packages/persistence/find_files.py       |     37 +-
 vistrails/packages/persistence/find_workflows.py   |     37 +-
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 .../packages/persistent_archive/identifiers.py     |     40 +
 vistrails/packages/persistent_archive/init.py      |    101 +
 .../packages/persistent_archive/persistedinput.py  |    183 +
 .../packages/persistent_archive/persistedoutput.py |    142 +
 .../packages/persistent_archive/queriedinput.py    |    138 +
 vistrails/packages/persistent_archive/queries.py   |    241 +
 vistrails/packages/persistent_archive/ui.py        |    143 +
 vistrails/packages/persistent_archive/widgets.py   |    327 +
 vistrails/packages/pipelineEdit/__init__.py        |     37 +-
 vistrails/packages/pipelineEdit/init.py            |     37 +-
 vistrails/packages/pythonCalc/__init__.py          |     39 +-
 vistrails/packages/pythonCalc/init.py              |    111 +-
 vistrails/packages/pythonCalcQt/__init__.py        |     37 +-
 vistrails/packages/pythonCalcQt/init.py            |     44 +-
 vistrails/packages/qgis/__init__.py                |     37 +-
 vistrails/packages/qgis/init.py                    |     61 +-
 vistrails/packages/rpy/__init__.py                 |     37 +-
 vistrails/packages/rpy/init.py                     |    125 +-
 vistrails/packages/rpy/widgets.py                  |     37 +-
 vistrails/packages/sklearn/__init__.py             |     48 +
 vistrails/packages/sklearn/init.py                 |    423 +
 vistrails/packages/sklearn/tests.py                |    300 +
 vistrails/packages/spreadsheet/__init__.py         |     39 +-
 vistrails/packages/spreadsheet/analogy_api.py      |     73 +-
 vistrails/packages/spreadsheet/basic_widgets.py    |    313 +-
 vistrails/packages/spreadsheet/cell.qrc            |     10 +
 vistrails/packages/spreadsheet/cell_rc.py          |     43 +-
 vistrails/packages/spreadsheet/celltoolbar.qrc     |     11 +
 vistrails/packages/spreadsheet/celltoolbar_rc.py   |    314 +-
 vistrails/packages/spreadsheet/identifiers.py      |     39 +-
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 .../spreadsheet}/images/camera.png                 |    Bin
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 vistrails/packages/spreadsheet/images/delete.png   |    Bin 0 -> 3617 bytes
 .../packages/spreadsheet/images/deletesheet.png    |    Bin 0 -> 2549 bytes
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 vistrails/packages/spreadsheet/images/locate.png   |    Bin 0 -> 13175 bytes
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 vistrails/packages/spreadsheet/images/open.png     |    Bin 0 -> 3703 bytes
 .../packages/spreadsheet/images/player_eject.png   |    Bin 0 -> 1509 bytes
 .../packages/spreadsheet/images/player_pause.png   |    Bin 0 -> 1201 bytes
 .../packages/spreadsheet/images/player_play.png    |    Bin 0 -> 1614 bytes
 vistrails/packages/spreadsheet/images/save.png     |    Bin 0 -> 2644 bytes
 vistrails/packages/spreadsheet/images/saveas.png   |    Bin 0 -> 2441 bytes
 vistrails/packages/spreadsheet/images/update.png   |    Bin 0 -> 11665 bytes
 .../packages/spreadsheet/images/view-refresh.png   |    Bin 0 -> 2024 bytes
 vistrails/packages/spreadsheet/init.py             |    173 +-
 vistrails/packages/spreadsheet/spreadsheet.qrc     |     14 +
 vistrails/packages/spreadsheet/spreadsheet_base.py |    125 +-
 vistrails/packages/spreadsheet/spreadsheet_cell.py |    493 +-
 .../packages/spreadsheet/spreadsheet_config.py     |     43 +-
 .../packages/spreadsheet/spreadsheet_controller.py |     65 +-
 .../packages/spreadsheet/spreadsheet_event.py      |     64 +-
 .../packages/spreadsheet/spreadsheet_execute.py    |     98 +-
 .../packages/spreadsheet/spreadsheet_helpers.py    |    107 +-
 vistrails/packages/spreadsheet/spreadsheet_rc.py   |     43 +-
 .../packages/spreadsheet/spreadsheet_registry.py   |     66 +-
 .../packages/spreadsheet/spreadsheet_sheet.py      |    332 +-
 vistrails/packages/spreadsheet/spreadsheet_tab.py  |    352 +-
 .../spreadsheet/spreadsheet_tabcontroller.py       |    246 +-
 .../packages/spreadsheet/spreadsheet_window.py     |    175 +-
 vistrails/packages/spreadsheet/widgets/__init__.py |     37 +-
 .../spreadsheet/widgets/iebrowser/__init__.py      |     37 +-
 .../spreadsheet/widgets/iebrowser/iecell.py        |     63 +-
 .../spreadsheet/widgets/imageviewer/__init__.py    |     44 +-
 .../widgets/imageviewer/images/fittocell.png       |    Bin 0 -> 1464 bytes
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 .../spreadsheet/widgets/imageviewer/imageviewer.py |    109 +-
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 .../widgets/imageviewer/imageviewer_rc.py          |     43 +-
 .../spreadsheet/widgets/richtext/__init__.py       |     45 +-
 .../spreadsheet/widgets/richtext/richtext.py       |    104 +-
 .../packages/spreadsheet/widgets/svg/__init__.py   |     37 +-
 vistrails/packages/spreadsheet/widgets/svg/svg.py  |    117 +-
 .../spreadsheet/widgets/webview/__init__.py        |     37 +-
 .../spreadsheet/widgets/webview/webview.py         |     68 +-
 vistrails/packages/sql/__init__.py                 |     57 +-
 vistrails/packages/sql/init.py                     |    496 +-
 vistrails/packages/sql/widgets.py                  |     51 +
 vistrails/packages/tabledata/__init__.py           |     31 +-
 vistrails/packages/tabledata/common.py             |    375 +-
 vistrails/packages/tabledata/convert/__init__.py   |     37 +
 .../packages/tabledata/convert/convert_dates.py    |    175 +-
 vistrails/packages/tabledata/identifiers.py        |      4 +-
 vistrails/packages/tabledata/init.py               |     91 +-
 vistrails/packages/tabledata/operations.py         |    699 +
 vistrails/packages/tabledata/read/__init__.py      |     58 +-
 vistrails/packages/tabledata/read/read_csv.py      |    273 +-
 vistrails/packages/tabledata/read/read_excel.py    |    271 +
 vistrails/packages/tabledata/read/read_json.py     |    325 +
 vistrails/packages/tabledata/read/read_numpy.py    |     83 +-
 vistrails/packages/tabledata/test_files/xl.xls     |    Bin 0 -> 23552 bytes
 vistrails/packages/tabledata/viewer.py             |    111 +-
 vistrails/packages/tabledata/widgets.py            |    217 +
 vistrails/packages/tabledata/write/__init__.py     |    136 +
 vistrails/packages/tabledata/write/write_csv.py    |    108 +
 vistrails/packages/tabledata/write/write_excel.py  |     89 +
 vistrails/packages/tabledata/write/write_numpy.py  |    112 +
 vistrails/packages/tej/__init__.py                 |      3 +
 vistrails/packages/tej/init.py                     |    386 +
 vistrails/packages/tej/widgets.py                  |     15 +
 vistrails/packages/vtk/__init__.py                 |     37 +-
 vistrails/packages/vtk/base_module.py              |    272 -
 vistrails/packages/vtk/class_tree.py               |    303 -
 vistrails/packages/vtk/common.py                   |     88 +
 vistrails/packages/vtk/fix_classes.py              |     67 -
 vistrails/packages/vtk/hasher.py                   |     37 +-
 vistrails/packages/vtk/identifiers.py              |     40 +-
 vistrails/packages/vtk/init.py                     |   1806 +-
 vistrails/packages/vtk/inspectors.py               |    279 +-
 vistrails/packages/vtk/offscreen.py                |     70 +-
 vistrails/packages/vtk/pythonclass.py              |    232 +
 vistrails/packages/vtk/tf_widget.py                |    323 +-
 vistrails/packages/vtk/vtk_parser.py               |    548 -
 .../packages/vtk/vtk_wrapper}/__init__.py          |      0
 vistrails/packages/vtk/vtk_wrapper/class_tree.py   |    305 +
 vistrails/packages/vtk/vtk_wrapper/fix_classes.py  |     70 +
 vistrails/packages/vtk/vtk_wrapper/parse.py        |    931 +
 vistrails/packages/vtk/vtk_wrapper/specs.py        |    704 +
 vistrails/packages/vtk/vtk_wrapper/vtk_classes.py  |    321 +
 vistrails/packages/vtk/vtk_wrapper/vtk_module.py   |     22 +
 vistrails/packages/vtk/vtk_wrapper/vtk_parser.py   |    733 +
 vistrails/packages/vtk/vtk_wrapper/wrapper.py      |     56 +
 vistrails/packages/vtk/vtkcell.py                  |    255 +-
 vistrails/packages/vtk/vtkcell_rc.py               |    198 -
 vistrails/packages/vtk/vtkhandler.py               |    101 +-
 vistrails/packages/vtk/vtkviewcell.py              |   1045 -
 vistrails/packages/vtlcreator/__init__.py          |     37 +-
 vistrails/packages/vtlcreator/init.py              |     63 +-
 vistrails/packages/webServices/__init__.py         |     37 +-
 .../packages/webServices/enumeration_widget.py     |     92 +-
 vistrails/packages/webServices/init.py             |    139 +-
 vistrails/run.py                                   |     66 +-
 vistrails/stop_vistrails_server.py                 |     35 +-
 vistrails/tests/__init__.py                        |     51 +-
 vistrails/tests/__main__.py                        |      4 +
 vistrails/tests/resources/__init__.py              |     35 +-
 vistrails/tests/resources/console_mode_test.py     |     43 +-
 vistrails/tests/resources/dummy.xml                |     35 +-
 vistrails/tests/resources/dummy_broken.xml         |     35 +-
 vistrails/tests/resources/dummy_new.xml            |     35 +-
 vistrails/tests/resources/dynamic_module_error.xml |     35 +-
 vistrails/tests/resources/empty_bookmarks.xml      |     35 +-
 vistrails/tests/resources/import_pkg/__init__.py   |      1 +
 .../import_pkg/test_import_pkg/__init__.py         |      1 +
 .../resources/import_pkg/test_import_pkg/init.py   |      1 +
 .../import_pkg/test_import_pkg/module1.py          |      1 +
 .../import_pkg/test_import_pkg/module2.py          |      1 +
 .../tests/resources/import_targets/__init__.py     |      1 +
 vistrails/tests/resources/import_targets/test1.py  |      1 +
 vistrails/tests/resources/import_targets/test2.py  |      1 +
 vistrails/tests/resources/import_targets/test3.py  |      1 +
 vistrails/tests/resources/import_targets/test4.py  |      1 +
 vistrails/tests/resources/import_targets/test5.py  |      1 +
 vistrails/tests/resources/import_targets/test6.py  |      1 +
 vistrails/tests/resources/pythonsource.xml         |     35 +-
 vistrails/tests/resources/spx_loop.vt              |    Bin 45577 -> 46018 bytes
 vistrails/tests/resources/startup-0.1.xml.tmpl     |     63 +
 vistrails/tests/resources/test-implicit-while.vt   |    Bin 0 -> 2766 bytes
 vistrails/tests/resources/test-list-custom.vt      |    Bin 0 -> 433901 bytes
 vistrails/tests/resources/test-streaming.vt        |    Bin 0 -> 430772 bytes
 vistrails/tests/resources/test_abstraction.xml     |     72 +
 vistrails/tests/resources/test_alias.xml           |     35 +-
 vistrails/tests/resources/test_ticket_73.xml       |     35 +-
 .../resources/test_upgrades_layout/__init__.py     |      3 +
 .../tests/resources/test_upgrades_layout/init.py   |      8 +
 vistrails/tests/resources/triangle_count.vt        |    Bin 7418 -> 7188 bytes
 vistrails/tests/resources/upgrades/__init__.py     |      3 +
 vistrails/tests/resources/upgrades/init.py         |     19 +
 vistrails/tests/resources/upgrades1.xml            |    152 +
 vistrails/tests/resources/upgrades2.xml            |    133 +
 vistrails/tests/resources/vtk.xml                  |     35 +-
 vistrails/tests/run_on_mac.sh                      |     12 +-
 vistrails/tests/runtestsuite.py                    |    284 +-
 vistrails/tests/utils.py                           |    164 +-
 vistrails/vistrails_server.py                      |     87 +-
 1530 files changed, 130036 insertions(+), 432947 deletions(-)

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