[adios] 25/207: patch fix
Alastair McKinstry
mckinstry at moszumanska.debian.org
Fri Jun 12 06:04:26 UTC 2015
This is an automated email from the git hooks/post-receive script.
mckinstry pushed a commit to branch master
in repository adios.
commit 88ecd06afdb03b25f40b4f780c4fc10c3c15892d
Author: Alastair McKinstry <mckinstry at debian.org>
Date: Mon Aug 15 16:58:10 2011 +0100
patch fix
---
debian/changelog | 6 +-
debian/patches/nompi_flag.patch | 597 +++++++++++++++++++++++++++++++++++++++-
2 files changed, 599 insertions(+), 4 deletions(-)
diff --git a/debian/changelog b/debian/changelog
index 446a7cc..4822287 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,8 +1,12 @@
adios (1.3-3) unstable; urgency=low
* Make lustre support conditional to intel,amd64, powerpc archs.
+ * Patch to stop compilation with dummy MPI if real parallel HDF5 is used.
+ Closes: #637893.
+ * make use of MPI_IN_PLACE conditional on MPI_IN_PLACE existing,
+ as its not present in LAM MPI.
- -- Alastair McKinstry <mckinstry at debian.org> Mon, 15 Aug 2011 09:34:02 +0100
+ -- Alastair McKinstry <mckinstry at debian.org> Mon, 15 Aug 2011 16:56:23 +0100
adios (1.3-2) unstable; urgency=low
diff --git a/debian/patches/nompi_flag.patch b/debian/patches/nompi_flag.patch
index ae04363..11996fe 100644
--- a/debian/patches/nompi_flag.patch
+++ b/debian/patches/nompi_flag.patch
@@ -5,14 +5,605 @@ Forwarded: no
Index: adios-1.3/utils/bp2h5/Makefile.am
===================================================================
---- adios-1.3.orig/utils/bp2h5/Makefile.am 2011-08-15 16:38:07.000000000 +0100
-+++ adios-1.3/utils/bp2h5/Makefile.am 2011-08-15 16:38:20.000000000 +0100
+--- adios-1.3.orig/utils/bp2h5/Makefile.am 2011-08-15 16:40:38.000000000 +0100
++++ adios-1.3/utils/bp2h5/Makefile.am 2011-08-15 16:50:21.000000000 +0100
@@ -6,7 +6,7 @@
bin_PROGRAMS = bp2h5
bp2h5_SOURCES = bp2h5.c
-bp2h5_CPPFLAGS = -DH5_USE_16_API $(ADIOSLIB_EXTRA_CPPFLAGS) $(ADIOSREADLIB_SEQ_CPPFLAGS) $(ADIOSREADLIB_SEQ_CFLAGS ) $(HDF5_CPPFLAGS)
-+bp2h5_CPPFLAGS = -DH5_USE_16_API $(ADIOSLIB_EXTRA_CPPFLAGS) $(ADIOSREADLIB_SEQ_CPPFLAGS) $(ADIOSREADLIB_INT_CFLAGS) $(HDF5_CPPFLAGS)
++bp2h5_CPPFLAGS = -DH5_USE_16_API $(ADIOSLIB_EXTRA_CPPFLAGS) $(ADIOSREADLIB_INT_CFLAGS) $(HDF5_CPPFLAGS)
bp2h5_LDFLAGS = $(ADIOSREADLIB_SEQ_LDFLAGS) $(HDF5_LDFLAGS)
bp2h5_LDADD = $(top_builddir)/src/libadiosread_nompi.a
+Index: adios-1.3/utils/bp2h5/Makefile.in
+===================================================================
+--- /dev/null 1970-01-01 00:00:00.000000000 +0000
++++ adios-1.3/utils/bp2h5/Makefile.in 2011-08-15 16:50:58.000000000 +0100
+@@ -0,0 +1,586 @@
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++ list='$(SOURCES) $(HEADERS) $(LISP) $(TAGS_FILES)'; \
++ unique=`for i in $$list; do \
++ if test -f "$$i"; then echo $$i; else echo $(srcdir)/$$i; fi; \
++ done | \
++ $(AWK) ' { files[$$0] = 1; } \
++ END { for (i in files) print i; }'`; \
++ if test -z "$(ETAGS_ARGS)$$tags$$unique"; then :; else \
++ test -n "$$unique" || unique=$$empty_fix; \
++ $(ETAGS) $(ETAGSFLAGS) $(AM_ETAGSFLAGS) $(ETAGS_ARGS) \
++ $$tags $$unique; \
++ fi
++ctags: CTAGS
++CTAGS: $(HEADERS) $(SOURCES) $(TAGS_DEPENDENCIES) \
++ $(TAGS_FILES) $(LISP)
++ tags=; \
++ here=`pwd`; \
++ list='$(SOURCES) $(HEADERS) $(LISP) $(TAGS_FILES)'; \
++ unique=`for i in $$list; do \
++ if test -f "$$i"; then echo $$i; else echo $(srcdir)/$$i; fi; \
++ done | \
++ $(AWK) ' { files[$$0] = 1; } \
++ END { for (i in files) print i; }'`; \
++ test -z "$(CTAGS_ARGS)$$tags$$unique" \
++ || $(CTAGS) $(CTAGSFLAGS) $(AM_CTAGSFLAGS) $(CTAGS_ARGS) \
++ $$tags $$unique
++
++GTAGS:
++ here=`$(am__cd) $(top_builddir) && pwd` \
++ && cd $(top_srcdir) \
++ && gtags -i $(GTAGS_ARGS) $$here
++
++distclean-tags:
++ -rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags
++
++distdir: $(DISTFILES)
++ @srcdirstrip=`echo "$(srcdir)" | sed 's|.|.|g'`; \
++ topsrcdirstrip=`echo "$(top_srcdir)" | sed 's|.|.|g'`; \
++ list='$(DISTFILES)'; for file in $$list; do \
++ case $$file in \
++ $(srcdir)/*) file=`echo "$$file" | sed "s|^$$srcdirstrip/||"`;; \
++ $(top_srcdir)/*) file=`echo "$$file" | sed "s|^$$topsrcdirstrip/|$(top_builddir)/|"`;; \
++ esac; \
++ if test -f $$file || test -d $$file; then d=.; else d=$(srcdir); fi; \
++ dir=`echo "$$file" | sed -e 's,/[^/]*$$,,'`; \
++ if test "$$dir" != "$$file" && test "$$dir" != "."; then \
++ dir="/$$dir"; \
++ $(mkdir_p) "$(distdir)$$dir"; \
++ else \
++ dir=''; \
++ fi; \
++ if test -d $$d/$$file; then \
++ if test -d $(srcdir)/$$file && test $$d != $(srcdir); then \
++ cp -pR $(srcdir)/$$file $(distdir)$$dir || exit 1; \
++ fi; \
++ cp -pR $$d/$$file $(distdir)$$dir || exit 1; \
++ else \
++ test -f $(distdir)/$$file \
++ || cp -p $$d/$$file $(distdir)/$$file \
++ || exit 1; \
++ fi; \
++ done
++check-am: all-am
++check: check-am
++all-am: Makefile $(PROGRAMS)
++installdirs:
++ for dir in "$(DESTDIR)$(bindir)"; do \
++ test -z "$$dir" || $(mkdir_p) "$$dir"; \
++ done
++install: install-am
++install-exec: install-exec-am
++install-data: install-data-am
++uninstall: uninstall-am
++
++install-am: all-am
++ @$(MAKE) $(AM_MAKEFLAGS) install-exec-am install-data-am
++
++installcheck: installcheck-am
++install-strip:
++ $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \
++ install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \
++ `test -z '$(STRIP)' || \
++ echo "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'"` install
++mostlyclean-generic:
++
++clean-generic:
++
++distclean-generic:
++ -test -z "$(CONFIG_CLEAN_FILES)" || rm -f $(CONFIG_CLEAN_FILES)
++
++maintainer-clean-generic:
++ @echo "This command is intended for maintainers to use"
++ @echo "it deletes files that may require special tools to rebuild."
++clean: clean-am
++
++clean-am: clean-binPROGRAMS clean-generic clean-libtool mostlyclean-am
++
++distclean: distclean-am
++ -rm -f Makefile
++distclean-am: clean-am distclean-compile distclean-generic \
++ distclean-libtool distclean-tags
++
++dvi: dvi-am
++
++dvi-am:
++
++html: html-am
++
++info: info-am
++
++info-am:
++
++install-data-am:
++
++install-exec-am: install-binPROGRAMS
++
++install-info: install-info-am
++
++install-man:
++
++installcheck-am:
++
++maintainer-clean: maintainer-clean-am
++ -rm -f Makefile
++maintainer-clean-am: distclean-am maintainer-clean-generic
++
++mostlyclean: mostlyclean-am
++
++mostlyclean-am: mostlyclean-compile mostlyclean-generic \
++ mostlyclean-libtool
++
++pdf: pdf-am
++
++pdf-am:
++
++ps: ps-am
++
++ps-am:
++
++uninstall-am: uninstall-binPROGRAMS uninstall-info-am
++
++.PHONY: CTAGS GTAGS all all-am check check-am clean clean-binPROGRAMS \
++ clean-generic clean-libtool ctags distclean distclean-compile \
++ distclean-generic distclean-libtool distclean-tags distdir dvi \
++ dvi-am html html-am info info-am install install-am \
++ install-binPROGRAMS install-data install-data-am install-exec \
++ install-exec-am install-info install-info-am install-man \
++ install-strip installcheck installcheck-am installdirs \
++ maintainer-clean maintainer-clean-generic mostlyclean \
++ mostlyclean-compile mostlyclean-generic mostlyclean-libtool \
++ pdf pdf-am ps ps-am tags uninstall uninstall-am \
++ uninstall-binPROGRAMS uninstall-info-am
++
++
++#CC=$(MPICC)
++#CXX=$(MPICXX)
++# Tell versions [3.59,3.63) of GNU make to not export all variables.
++# Otherwise a system limit (for SysV at least) may be exceeded.
++.NOEXPORT:
--
Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-science/packages/adios.git
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