[adios] 76/207: Merge branch 'upstream' 1.6.0

Alastair McKinstry mckinstry at moszumanska.debian.org
Fri Jun 12 06:04:41 UTC 2015


This is an automated email from the git hooks/post-receive script.

mckinstry pushed a commit to branch master
in repository adios.

commit 073929a522e68b2e9ae0e7659cae34fc4daa9d37
Merge: eed3591 88e1042
Author: Alastair McKinstry <mckinstry at debian.org>
Date:   Sun Dec 22 07:20:49 2013 +0000

    Merge branch 'upstream' 1.6.0

 CMakeLists.txt                                     |  1052 +-
 Makefile.in                                        |    31 +-
 NEWS                                               |    19 +
 README                                             |     4 +-
 TODO                                               |    35 +-
 aclocal.m4                                         |     8 +
 cmake_init                                         |   270 +-
 config.h.cmake                                     |    68 +-
 config.h.in                                        |    45 +-
 config/ac_alacrity.m4                              |    73 +
 config/ac_aplod.m4                                 |    73 +
 config/ac_bgq.m4                                   |    24 +
 config/ac_bzip2.m4                                 |    73 +
 config/ac_dataspaces.m4                            |    24 +-
 config/ac_flexpath.m4                              |    10 -
 config/ac_isobar.m4                                |    73 +
 config/ac_mxml.m4                                  |   154 +-
 config/ac_nc4par.m4                                |     3 +-
 config/ac_ncsu_timer.m4                            |    60 +
 config/ac_phdf5.m4                                 |     3 +-
 config/ac_szip.m4                                  |    73 +
 config/ac_zlib.m4                                  |    73 +
 configure                                          |  3311 +++-
 configure.ac                                       |   311 +-
 examples/C/Makefile.am                             |     2 +-
 examples/C/Makefile.in                             |    33 +-
 examples/C/arrays/CMakeLists.txt                   |    16 +-
 examples/C/arrays/Makefile.am                      |     5 +-
 examples/C/arrays/Makefile.in                      |    67 +-
 examples/C/arrays/arrays.xml                       |     6 +-
 examples/C/attributes/CMakeLists.txt               |    16 +-
 examples/C/attributes/Makefile.am                  |     5 +-
 examples/C/attributes/Makefile.in                  |    67 +-
 examples/C/attributes/attributes.xml               |    20 +-
 examples/C/compression_test/Makefile.am            |    37 +
 .../C/{manual => compression_test}/Makefile.in     |   181 +-
 examples/C/compression_test/adios_global.c         |    88 +
 examples/C/compression_test/adios_read_box.c       |    79 +
 examples/C/compression_test/adios_read_points.c    |    59 +
 .../compression_test/conf_genarray3D/amr_bzip2.xml |    42 +
 .../conf_genarray3D/amr_identity.xml               |    42 +
 .../conf_genarray3D/amr_isobar.xml                 |    42 +
 .../compression_test/conf_genarray3D/amr_none.xml  |    42 +
 .../compression_test/conf_genarray3D/amr_zlib.xml  |    42 +
 .../compression_test/conf_genarray3D/mpi_bzip2.xml |    42 +
 .../conf_genarray3D/mpi_identity.xml               |    42 +
 .../conf_genarray3D/mpi_isobar.xml                 |    42 +
 .../compression_test/conf_genarray3D/mpi_none.xml  |    42 +
 .../compression_test/conf_genarray3D/mpi_zlib.xml  |    42 +
 .../conf_genarray3D/posix_bzip2.xml                |    42 +
 .../conf_genarray3D/posix_identity.xml             |    42 +
 .../conf_genarray3D/posix_isobar.xml               |    42 +
 .../conf_genarray3D/posix_none.xml                 |    42 +
 .../conf_genarray3D/posix_zlib.xml                 |    42 +
 .../conf_simple/amr_bzip2.xml}                     |     5 +-
 .../conf_simple/amr_identity.xml}                  |     5 +-
 .../conf_simple/amr_isobar.xml}                    |     5 +-
 .../conf_simple/amr_none.xml}                      |     5 +-
 .../conf_simple/amr_zlib.xml}                      |     5 +-
 .../conf_simple/bak}/adios_global.xml              |     5 +-
 .../conf_simple/bak/mpi.xml}                       |     5 +-
 .../conf_simple/bak/posix.xml}                     |     5 +-
 .../conf_simple/bak_2/amr_bzip2.xml}               |     5 +-
 .../conf_simple/bak_2/amr_identity.xml}            |     5 +-
 .../conf_simple/bak_2/amr_isobar.xml}              |     5 +-
 .../conf_simple/bak_2/amr_none.xml}                |     5 +-
 .../conf_simple/bak_2/amr_szip.xml}                |     5 +-
 .../conf_simple/bak_2/amr_zlib.xml}                |     5 +-
 .../conf_simple/bak_2/mpi_bzip2.xml}               |     5 +-
 .../conf_simple/bak_2/mpi_identity.xml}            |     5 +-
 .../conf_simple/bak_2/mpi_isobar.xml}              |     5 +-
 .../conf_simple/bak_2/mpi_none.xml}                |     5 +-
 .../conf_simple/bak_2/mpi_szip.xml}                |     5 +-
 .../conf_simple/bak_2/mpi_zlib.xml}                |     5 +-
 .../conf_simple/bak_2/posix_bzip2.xml}             |     5 +-
 .../conf_simple/bak_2/posix_identity.xml}          |     5 +-
 .../conf_simple/bak_2/posix_isobar.xml}            |     5 +-
 .../conf_simple/bak_2/posix_none.xml}              |     5 +-
 .../conf_simple/bak_2/posix_szip.xml}              |     5 +-
 .../conf_simple/bak_2/posix_zlib.xml}              |     5 +-
 .../conf_simple/mpi_bzip2.xml}                     |     5 +-
 .../conf_simple/mpi_identity.xml}                  |     5 +-
 .../conf_simple/mpi_isobar.xml}                    |     5 +-
 .../conf_simple/mpi_none.xml}                      |     5 +-
 .../conf_simple/mpi_zlib.xml}                      |     5 +-
 .../conf_simple/posix_bzip2.xml}                   |     5 +-
 .../conf_simple/posix_identity.xml}                |     5 +-
 .../conf_simple/posix_isobar.xml}                  |     5 +-
 .../conf_simple/posix_none.xml}                    |     5 +-
 .../conf_simple/posix_zlib.xml}                    |     5 +-
 examples/C/compression_test/genarray3D.c           |   205 +
 examples/C/compression_test/gread_temperature.ch   |     4 +
 .../gwrite_temperature.ch                          |     6 +-
 examples/C/compression_test/read_test.h            |   154 +
 examples/C/compression_test/test_read_box.sh       |    13 +
 examples/C/compression_test/test_read_points.sh    |    13 +
 examples/C/compression_test/write_all.sh           |    15 +
 examples/C/flexpath_arrays/Makefile.in             |    31 +-
 .../global_range_select/Makefile.am                |     7 +-
 .../global_range_select/Makefile.in                |    71 +-
 .../C/flexpath_arrays/global_range_select/README   |    50 +
 .../flexpath_arrays/global_range_select/arrays.xml |    12 +-
 .../global_range_select/arrays_read.c              |    67 +-
 .../global_range_select/arrays_write.c             |    51 +-
 .../C/flexpath_arrays/process_select/Makefile.am   |     6 +-
 .../C/flexpath_arrays/process_select/Makefile.in   |    68 +-
 examples/C/global-array-time/CMakeLists.txt        |    11 +
 examples/C/global-array-time/Makefile.am           |     5 +-
 examples/C/global-array-time/Makefile.in           |    67 +-
 examples/C/global-array-time/adios_globaltime.xml  |    17 +-
 .../C/global-array-time/adios_globaltime_no_xml.c  |     4 +-
 examples/C/global-array/CMakeLists.txt             |    15 +
 examples/C/global-array/Makefile.am                |     5 +-
 examples/C/global-array/Makefile.in                |    67 +-
 examples/C/global-array/adios_global.xml           |    17 +-
 examples/C/manual/CMakeLists.txt                   |    21 +-
 examples/C/manual/Makefile.am                      |     5 +-
 examples/C/manual/Makefile.in                      |    67 +-
 examples/C/manual/config.xml                       |    22 +-
 examples/C/manual/gread_temperature.ch             |     2 +-
 examples/C/manual/gwrite_temperature.ch            |     2 +-
 examples/C/read_all/Makefile.am                    |     2 +-
 examples/C/read_all/Makefile.in                    |    35 +-
 examples/C/read_all/read_all.c                     |     3 +-
 examples/C/scalars/CMakeLists.txt                  |    24 +-
 examples/C/scalars/Makefile.am                     |     5 +-
 examples/C/scalars/Makefile.in                     |    67 +-
 examples/C/scalars/gread_scalars.ch                |    32 +-
 examples/C/scalars/scalars.xml                     |    35 +-
 examples/C/schema/CMakeLists.txt                   |    38 +-
 examples/C/schema/Makefile.am                      |    49 +-
 examples/C/schema/Makefile.in                      |   186 +-
 examples/C/schema/rectilinear.c                    |    89 -
 examples/C/schema/rectilinear.xml                  |    31 -
 examples/C/schema/rectilinear2d.c                  |   158 +
 examples/C/schema/rectilinear2d.png                |   Bin 0 -> 3728 bytes
 examples/C/schema/rectilinear2d.readme             |    42 +
 examples/C/schema/rectilinear2d.xml                |    51 +
 examples/C/schema/structured.c                     |    89 -
 examples/C/schema/structured.xml                   |    20 -
 examples/C/schema/structured2d.c                   |   150 +
 examples/C/schema/structured2d.readme              |    41 +
 examples/C/schema/structured2d.xml                 |    51 +
 examples/C/schema/tri2d.c                          |   305 +
 examples/C/schema/tri2d.n.png                      |   Bin 0 -> 7422 bytes
 examples/C/schema/tri2d.readme                     |    49 +
 examples/C/schema/tri2d.xml                        |    76 +
 examples/C/schema/triangle2d.c                     |   114 +
 examples/C/schema/triangle2d.n4.png                |   Bin 0 -> 32602 bytes
 examples/C/schema/triangle2d.readme                |    40 +
 examples/C/schema/triangle2d.xml                   |    58 +
 examples/C/schema/uniform.c                        |    78 -
 examples/C/schema/uniform.xml                      |    69 -
 examples/C/schema/uniform2d.c                      |   143 +
 examples/C/schema/uniform2d.png                    |   Bin 0 -> 7100 bytes
 examples/C/schema/uniform2d.readme                 |    42 +
 examples/C/schema/uniform2d.xml                    |    49 +
 examples/C/schema/unstructured.c                   |   441 -
 examples/C/schema/unstructured.xml                 |    37 -
 examples/C/stat/CMakeLists.txt                     |    11 +
 examples/C/stat/Makefile.am                        |     6 +-
 examples/C/stat/Makefile.in                        |    68 +-
 examples/C/stat/stat.xml                           |    14 +-
 examples/C/transforms/Makefile.am                  |    44 +
 examples/C/{manual => transforms}/Makefile.in      |   208 +-
 examples/C/transforms/S3D/alacrity.xml             |    28 +
 examples/C/transforms/S3D/identity.xml             |    27 +
 examples/C/transforms/S3D/none.xml                 |    27 +
 examples/C/transforms/adios_global.c               |    53 +
 examples/C/transforms/adios_global.xml             |    20 +
 examples/C/transforms/adios_read_all_3D.c          |   259 +
 examples/C/transforms/adios_read_points.c          |    86 +
 examples/C/transforms/adios_read_subv.c            |    99 +
 examples/C/transforms/adios_read_wb_subpg.c        |    91 +
 examples/C/transforms/adios_write_all_3D.c         |   198 +
 examples/C/transforms/gread_temperature.ch         |     4 +
 .../C/{manual => transforms}/gwrite_temperature.ch |     6 +-
 examples/Fortran/Makefile.in                       |    31 +-
 examples/Fortran/arrays/Makefile.am                |     3 +
 examples/Fortran/arrays/Makefile.in                |    63 +-
 examples/Fortran/arrays/arrays.xml                 |     6 +-
 examples/Fortran/global-array-time/Makefile.am     |     3 +
 examples/Fortran/global-array-time/Makefile.in     |    63 +-
 .../Fortran/global-array-time/adios_globaltime.xml |    23 +-
 examples/Fortran/global-array/Makefile.am          |     3 +
 examples/Fortran/global-array/Makefile.in          |    63 +-
 examples/Fortran/global-array/adios_global.xml     |    15 +-
 examples/Fortran/scalars/Makefile.am               |     3 +
 examples/Fortran/scalars/Makefile.in               |    63 +-
 examples/Fortran/scalars/scalars.xml               |     6 +-
 examples/Makefile.in                               |    31 +-
 examples/coupling/.gitignore                       |     4 +
 examples/coupling/coupling_reader_2D.F90           |     5 +-
 examples/coupling/coupling_reader_2D.xml           |    22 +-
 examples/coupling/coupling_writer_2D.xml           |    38 +-
 examples/coupling/job1                             |    89 +
 examples/coupling/read.F90                         |   320 -
 examples/skel/picongpu/picongpu.xml                |    34 +
 examples/skel/picongpu/picongpu_params.xml         |    40 +
 examples/skel/picongpu/picongpu_skel.xml           |    34 +
 .../skel/picongpu/test/Makefile                    |    20 +-
 examples/skel/picongpu/test/picongpu.xml           |    34 +
 examples/skel/picongpu/test/picongpu_params.xml    |    34 +
 .../skel/picongpu/test/picongpu_params.xml.default |    34 +
 examples/skel/picongpu/test/picongpu_skel.xml      |    35 +
 .../picongpu/test/picongpu_skel_fields_write.c     |   184 +
 examples/staging/stage_write/Makefile              |    47 +-
 .../staging/stage_write/Makefile.genarray_stream   |    16 +-
 .../stage_write/{Makefile => Makefile.stage_write} |    14 +-
 examples/staging/stage_write/genarray_stream.F90   |    44 +-
 examples/staging/stage_write/genarray_stream.xml   |    32 +-
 examples/staging/stage_write/job                   |    13 +-
 examples/staging/stage_write/{job => job.32}       |    20 +-
 examples/staging/stage_write/make.settings         |    17 +
 examples/staging/stage_write/stage_write.c         |    87 +-
 examples/staging/stage_write/utils.c               |     2 +-
 examples/staging/stage_write/x.bp.dir/x.bp.0       |   Bin 386962 -> 0 bytes
 runconf                                            |   197 +-
 src/CMakeLists.txt                                 |   141 +-
 src/Makefile.am                                    |   134 +-
 src/Makefile.in                                    |  3572 +++-
 src/core/adios.c                                   |    49 +-
 src/core/adios_bp_v1.c                             |   234 +-
 src/core/adios_bp_v1.h                             |    55 +-
 src/core/adios_copyspec.c                          |   215 +
 src/core/adios_copyspec.h                          |   249 +
 src/core/adios_endianness.c                        |   132 +-
 src/core/adios_internals.c                         |  4959 ++++--
 src/core/adios_internals.h                         |   348 +-
 src/core/adios_internals_mxml.c                    |  7247 ++-------
 src/core/adios_read.c                              |    41 +-
 src/core/adios_read_hooks.c                        |     2 +
 src/core/adios_read_hooks.h                        |     8 +
 src/core/adios_read_v1.c                           |     6 +-
 src/core/adios_selection_util.c                    |   275 +
 src/core/adios_selection_util.h                    |    33 +
 src/core/adios_subvolume.c                         |   536 +
 src/core/adios_subvolume.h                         |   261 +
 src/core/adios_timing.c                            |    24 +-
 src/core/adios_timing.h                            |     8 +-
 src/core/adios_transport_hooks.c                   |    26 +-
 src/core/adios_transport_hooks.h                   |    22 +-
 src/core/adiosf.c                                  |    74 +-
 src/core/adiosf_read.c                             |     2 +-
 src/core/adiosf_read_mod.f90                       |   270 +-
 src/core/adiosf_read_v1.c                          |    94 +-
 src/core/adiosf_write_mod.f90                      |   765 +-
 src/core/bp_types.h                                |    71 +-
 src/core/bp_utils.c                                |   642 +-
 src/core/bp_utils.h                                |    28 +-
 src/core/buffer.c                                  |     4 +-
 src/core/common_adios.c                            |   414 +-
 src/core/common_read.c                             |  2531 ++-
 src/core/common_read.h                             |     9 +
 src/core/ds_metadata.h                             |    12 +-
 src/core/flexpath.h                                |    98 +-
 src/core/globals.c                                 |     4 +-
 src/core/mpidummy.c                                |     8 +-
 src/core/qhashtbl.c                                |   657 +
 src/core/qhashtbl.h                                |    80 +
 src/core/transforms/adios_patchdata.c              |   342 +
 src/core/transforms/adios_patchdata.h              |    24 +
 src/core/transforms/adios_transforms_common.c      |   348 +
 src/core/transforms/adios_transforms_common.h      |    64 +
 src/core/transforms/adios_transforms_datablock.c   |    85 +
 src/core/transforms/adios_transforms_datablock.h   |    50 +
 src/core/transforms/adios_transforms_hooks.c       |   152 +
 src/core/transforms/adios_transforms_hooks.h       |    47 +
 src/core/transforms/adios_transforms_hooks_read.c  |    85 +
 src/core/transforms/adios_transforms_hooks_read.h  |   127 +
 src/core/transforms/adios_transforms_hooks_write.c |    71 +
 src/core/transforms/adios_transforms_hooks_write.h |    97 +
 src/core/transforms/adios_transforms_read.c        |   598 +
 src/core/transforms/adios_transforms_read.h        |    79 +
 src/core/transforms/adios_transforms_reqgroup.c    |   500 +
 src/core/transforms/adios_transforms_reqgroup.h    |   149 +
 src/core/transforms/adios_transforms_specparse.c   |   157 +
 src/core/transforms/adios_transforms_specparse.h   |    50 +
 src/core/transforms/adios_transforms_transinfo.h   |    30 +
 src/core/transforms/adios_transforms_util.c        |    69 +
 src/core/transforms/adios_transforms_util.h        |    22 +
 src/core/transforms/adios_transforms_write.c       |   774 +
 src/core/transforms/adios_transforms_write.h       |    97 +
 .../transforms/plugindetect/detect_plugin_infos.h  |    74 +
 .../plugindetect/detect_plugin_read_hook_decls.h   |    29 +
 .../plugindetect/detect_plugin_read_hook_reg.h     |    32 +
 .../transforms/plugindetect/detect_plugin_types.h  |    32 +
 .../plugindetect/detect_plugin_write_hook_decls.h  |    29 +
 .../plugindetect/detect_plugin_write_hook_reg.h    |    32 +
 .../transforms/plugindetect/plugin_info_types.h    |    24 +
 src/core/util.c                                    |    21 +-
 src/core/util.h                                    |     2 +
 src/nssi/adios_nssi_config.c                       |     2 +-
 src/nssi/adios_nssi_filter.c                       |     6 +-
 src/public/adios.h                                 |    17 +-
 src/public/adios_error.h                           |    50 +-
 src/public/adios_read_v1.h                         |     2 +-
 src/public/adios_read_v2.h                         |    80 +-
 src/public/adios_schema.h                          |    78 +
 src/public/adios_selection.h                       |    13 +
 src/public/adios_types.h                           |     2 +-
 src/read/read_bp.c                                 |   616 +-
 src/read/read_bp_staged.c                          |    10 +-
 src/read/read_bp_staged1.c                         |    53 +-
 src/read/read_dataspaces.c                         |    50 +-
 src/read/read_datatap.c                            |     6 +-
 src/read/read_dimes.c                              |    43 +-
 src/read/read_flexpath.c                           |  1894 ++-
 src/read/read_nssi.c                               |     2 +-
 src/transforms/Makefile.plugins                    |    27 +
 src/transforms/adios_transform_alacrity_read.c     |    79 +
 src/transforms/adios_transform_alacrity_write.c    |   187 +
 src/transforms/adios_transform_aplod_read.c        |   192 +
 src/transforms/adios_transform_aplod_write.c       |   197 +
 src/transforms/adios_transform_bzip2_read.c        |   118 +
 src/transforms/adios_transform_bzip2_write.c       |   156 +
 src/transforms/adios_transform_identity_read.c     |   124 +
 src/transforms/adios_transform_identity_read.h     |    27 +
 src/transforms/adios_transform_identity_write.c    |    33 +
 src/transforms/adios_transform_isobar_read.c       |   131 +
 src/transforms/adios_transform_isobar_write.c      |   190 +
 src/transforms/adios_transform_szip.h              |   139 +
 src/transforms/adios_transform_szip_read.c         |    95 +
 src/transforms/adios_transform_szip_write.c        |   116 +
 src/transforms/adios_transform_zlib_read.c         |   114 +
 src/transforms/adios_transform_zlib_write.c        |   176 +
 src/transforms/transform_plugins.h                 |    14 +
 src/write/adios_dataspaces.c                       |   194 +-
 src/write/adios_datatap.c                          |  1364 +-
 src/write/adios_dimes.c                            |   193 +-
 src/write/adios_flexpath.c                         |  1662 +-
 src/write/adios_mpi.c                              |   131 +-
 src/write/adios_mpi_amr.c                          |   571 +-
 src/write/{adios_mpi_amr.c => adios_mpi_bgq.c}     |  2422 +--
 src/write/adios_mpi_lustre.c                       |   197 +-
 src/write/adios_nc4.c                              |   132 +-
 src/write/adios_nssi.c                             |     6 +-
 src/write/adios_phdf5.c                            |    83 +-
 src/write/adios_posix.c                            |   184 +-
 src/write/adios_posix1.c                           |    70 +-
 src/write/adios_var_merge.c                        |   325 +-
 tests/C/CMakeLists.txt                             |    13 +-
 tests/C/Makefile.am                                |     7 +-
 tests/C/Makefile.in                                |   272 +-
 .../C/flexpath_tests/1D_arr_global/CMakeLists.txt  |    23 +
 tests/C/flexpath_tests/1D_arr_global/Makefile.am   |    21 +
 .../C/flexpath_tests/1D_arr_global}/Makefile.in    |   150 +-
 tests/C/flexpath_tests/1D_arr_global/cfg.h         |    15 +
 tests/C/flexpath_tests/1D_arr_global/reader.c      |   188 +
 .../1D_arr_global/test_config_flex.xml             |     7 +-
 tests/C/flexpath_tests/1D_arr_global/writer.c      |    88 +
 .../1D_arr_global_noxml/CMakeLists.txt             |    15 +
 .../flexpath_tests/1D_arr_global_noxml/Makefile.am |    22 +
 .../1D_arr_global_noxml}/Makefile.in               |   136 +-
 tests/C/flexpath_tests/1D_arr_global_noxml/cfg.h   |    15 +
 .../C/flexpath_tests/1D_arr_global_noxml/reader.c  |   184 +
 .../C/flexpath_tests/1D_arr_global_noxml/writer.c  |   124 +
 tests/C/flexpath_tests/CMakeLists.txt              |     8 +
 tests/C/flexpath_tests/Makefile.am                 |     5 +
 {utils => tests/C/flexpath_tests}/Makefile.in      |    47 +-
 tests/C/flexpath_tests/README                      |   128 +
 tests/C/flexpath_tests/common/utils.c              |   317 +
 .../global_range_select/CMakeLists.txt             |    15 +
 .../global_range_select/Makefile.am                |     8 +-
 .../global_range_select/Makefile.in                |    76 +-
 .../flexpath_tests}/global_range_select/arrays.xml |     0
 .../global_range_select/arrays_read.c              |     6 +-
 .../global_range_select/arrays_write.c             |     6 +-
 .../global_range_select/run_tests.pl               |     8 +
 tests/C/flexpath_tests/include/misc.h              |   118 +
 tests/C/flexpath_tests/include/test_common.h       |   260 +
 tests/C/flexpath_tests/include/utils.h             |    23 +
 tests/C/flexpath_tests/maya_append/CMakeLists.txt  |    15 +
 tests/C/flexpath_tests/maya_append/Makefile.am     |    19 +
 .../C/flexpath_tests/maya_append}/Makefile.in      |   128 +-
 tests/C/flexpath_tests/maya_append/cfg.h           |    26 +
 tests/C/flexpath_tests/maya_append/reader.c        |   137 +
 tests/C/flexpath_tests/maya_append/readme.txt      |    64 +
 tests/C/flexpath_tests/maya_append/writer.c        |   133 +
 tests/C/flexpath_tests/maya_noxml/CMakeLists.txt   |    15 +
 tests/C/flexpath_tests/maya_noxml/Makefile.am      |    19 +
 .../C/flexpath_tests/maya_noxml}/Makefile.in       |   119 +-
 tests/C/flexpath_tests/maya_noxml/cfg.h            |    47 +
 tests/C/flexpath_tests/maya_noxml/reader.c         |   374 +
 tests/C/flexpath_tests/maya_noxml/readme.txt       |   116 +
 tests/C/flexpath_tests/maya_noxml/writer.c         |   292 +
 tests/C/flexpath_tests/scalar/CMakeLists.txt       |    15 +
 tests/C/flexpath_tests/scalar/Makefile.am          |    21 +
 .../C/flexpath_tests/scalar}/Makefile.in           |   150 +-
 tests/C/flexpath_tests/scalar/cfg.h                |    14 +
 tests/C/flexpath_tests/scalar/reader.c             |   130 +
 tests/C/flexpath_tests/scalar/readme.txt           |   108 +
 tests/C/flexpath_tests/scalar/test_config_flex.xml |    15 +
 tests/C/flexpath_tests/scalar/test_config_mpi.xml  |    15 +
 tests/C/flexpath_tests/scalar/writer.c             |    73 +
 tests/Fortran/CMakeLists.txt                       |     2 +-
 tests/Fortran/Makefile.am                          |     3 +
 tests/Fortran/Makefile.in                          |    63 +-
 tests/Makefile.in                                  |    31 +-
 tests/bp_read/CMakeLists.txt                       |    11 +-
 tests/bp_read/Makefile.am                          |     5 +-
 tests/bp_read/Makefile.in                          |    65 +-
 tests/genarray/CMakeLists.txt                      |     4 +-
 tests/genarray/Makefile.am                         |     7 +-
 tests/genarray/Makefile.in                         |    65 +-
 tests/genarray/genarray.xml                        |    15 +-
 tests/genarray/genarray2D.F90                      |    22 +-
 tests/genarray/genarray3d.xml                      |    21 +-
 tests/suite/CMakeLists.txt                         |    18 +-
 tests/suite/Makefile.am                            |     6 +
 tests/suite/Makefile.in                            |    65 +-
 tests/suite/programs/CMakeLists.txt                |    60 +-
 tests/suite/programs/Makefile.am                   |    77 +-
 tests/suite/programs/Makefile.in                   |   248 +-
 tests/suite/programs/adios_amr_write.c             |     2 +-
 tests/suite/programs/adios_amr_write.xml           |     2 +-
 tests/suite/programs/adios_amr_write_2vars.c       |     2 +-
 tests/suite/programs/adios_staged_read.c           |     2 +-
 tests/suite/programs/adios_staged_read_2vars.c     |     2 +-
 tests/suite/programs/adios_staged_read_v2.c        |     2 +-
 tests/suite/programs/adios_transforms.xml          |    26 +
 tests/suite/programs/adios_transforms_read_write.c |   223 +
 tests/suite/programs/connect_to_space_subset.c     |     4 +-
 tests/suite/programs/copy_subvolume.c              |   275 +
 tests/suite/programs/hashtest.c                    |   152 +
 tests/suite/programs/local_array_time.c            |     4 +-
 tests/suite/programs/many_vars.c                   |   175 +-
 tests/suite/programs/path_test.c                   |   332 +
 tests/suite/programs/path_test.xml                 |    67 +
 tests/suite/programs/reuse_dim.c                   |   209 +
 tests/suite/programs/selections.c                  |     4 +-
 tests/suite/programs/transforms.xml                |    12 +
 tests/suite/programs/transforms_specparse.c        |   165 +
 tests/suite/programs/two_groups.c                  |     4 +-
 tests/suite/programs/write_alternate.c             |     4 +-
 tests/suite/programs/write_alternate.xml           |    18 +-
 tests/suite/programs/write_read.c                  |   222 +-
 tests/suite/programs/write_read.xml                |    36 +-
 tests/suite/reference/arrays_bpls.txt              |    12 +-
 tests/suite/reference/attributes_bpls.txt          |    24 +-
 tests/suite/reference/attributes_read.txt          |    16 +-
 tests/suite/reference/global_array_bpls.txt        |    10 +-
 tests/suite/reference/global_array_no_xml_bpls.txt |   212 +-
 .../suite/reference/global_array_no_xml_f_bpls.txt |    32 +-
 tests/suite/reference/global_array_time_bpls.txt   |    14 +-
 tests/suite/reference/no_xml_write_byid_bpls.txt   |   206 +-
 tests/suite/reference/no_xml_write_byid_f_bpls.txt |    26 +-
 tests/suite/reference/scalars_write_bpls.txt       |    30 +-
 .../suite/reference/transforms_read_write_bpls.txt |    10 +
 tests/suite/reference/write_read_bpls.txt          |    36 +-
 tests/suite/test.sh                                |    21 +-
 tests/suite/tests/01_scalars.sh                    |    25 +-
 tests/suite/tests/02_attributes.sh                 |    11 +-
 tests/suite/tests/03_arrays.sh                     |    11 +-
 tests/suite/tests/04_global_array.sh               |    20 +-
 tests/suite/tests/05_global_array_time.sh          |    21 +-
 tests/suite/tests/06_posix_method.sh               |     5 +-
 tests/suite/tests/07_global_array_no_xml.sh        |    19 +-
 tests/suite/tests/08_amr_write_read.sh             |    15 +-
 tests/suite/tests/09_amr_write_read_2vars.sh       |    11 +-
 tests/suite/tests/10_write_read.sh                 |     5 +-
 tests/suite/tests/11_write_alternate.sh            |     5 +-
 tests/suite/tests/12_selections.sh                 |     2 +-
 tests/suite/tests/13_write_byid.sh                 |    16 +-
 tests/suite/tests/14_pathtest.sh                   |    45 +
 .../tests/{12_selections.sh => 15_reuse_dim.sh}    |    16 +-
 tests/suite/tests/16_transform_write_read.sh       |    65 +
 utils/CMakeLists.txt                               |     3 +-
 utils/Makefile.am                                  |     2 +-
 utils/Makefile.in                                  |    39 +-
 utils/adios_lint/Makefile.am                       |     2 +-
 utils/adios_lint/Makefile.in                       |    35 +-
 utils/bp2ascii/Makefile.am                         |     2 +-
 utils/bp2ascii/Makefile.in                         |    35 +-
 utils/bp2ascii/bp2ascii.c                          |     2 +-
 utils/bp2bp/CMakeLists.txt                         |     8 +-
 utils/bp2bp/Makefile.am                            |     2 +-
 utils/bp2bp/Makefile.in                            |    35 +-
 utils/bp2h5/CMakeLists.txt                         |     2 +
 utils/bp2h5/Makefile.am                            |     2 +-
 utils/bp2h5/Makefile.in                            |    35 +-
 utils/bp2ncd/CMakeLists.txt                        |     7 +-
 utils/bp2ncd/Makefile.am                           |     2 +-
 utils/bp2ncd/Makefile.in                           |    35 +-
 utils/bp2ncd/bp2ncd.c                              |   536 +-
 utils/bpdiff/CMakeLists.txt                        |    11 +
 utils/bpdiff/Makefile.am                           |    17 +
 utils/{bpdump => bpdiff}/Makefile.in               |   101 +-
 utils/bpdiff/bpdiff.c                              |   500 +
 utils/bpdiff/decompose.h                           |    17 +
 utils/bpdiff/decompose_block.c                     |    91 +
 .../staging/stage_write => utils/bpdiff}/utils.c   |     0
 utils/bpdiff/utils.h                               |    50 +
 utils/bpdump/CMakeLists.txt                        |     3 +-
 utils/bpdump/Makefile.am                           |     2 +-
 utils/bpdump/Makefile.in                           |    36 +-
 utils/bpdump/bpdump.c                              |    95 +-
 utils/bpls/Makefile.am                             |     2 +-
 utils/bpls/Makefile.in                             |    35 +-
 utils/bpls/bpls.c                                  |   252 +-
 utils/bpls/bpls.h                                  |     5 +-
 utils/bpsplit/Makefile.am                          |     2 +-
 utils/bpsplit/Makefile.in                          |    35 +-
 utils/bpsplit/bpappend.c                           |    26 +-
 utils/bpsplit/bpgettime.c                          |     3 +-
 utils/bpsplit/bpsplit.c                            |    31 +-
 utils/gpp/Makefile.am                              |     3 +
 utils/gpp/Makefile.in                              |    61 +-
 utils/gpp/ad_config.py                             |    34 +-
 utils/gpp/gpp.py                                   |    15 +-
 utils/skel/CMakeLists.txt                          |    13 +-
 utils/skel/Makefile.am                             |    14 +
 utils/skel/Makefile.in                             |    57 +-
 utils/skel/bin/skel                                |    72 +-
 utils/skel/bin/skel_extract.py                     |    22 +-
 utils/skel/etc/Makefile.in                         |    31 +-
 utils/skel/etc/templates/Makefile.default.tpl      |    15 +-
 utils/skel/etc/templates/submit_sith.tpl           |     2 +-
 utils/skel/lib/adios.py                            |    40 +-
 utils/skel/lib/skel_bpls.py                        |    83 +
 utils/skel/lib/skel_bpy.py                         |   276 +
 utils/skel/lib/skel_makefile.py                    |    69 +
 utils/skel/lib/skel_params.py                      |    65 +-
 utils/skel/lib/skel_replay.py                      |   105 +
 utils/skel/lib/skel_source.py                      |    93 +-
 utils/skel/lib/skel_submit.py                      |    73 +-
 utils/skel/lib/skel_xml.py                         |    71 +-
 utils/skel/src/Makefile.in                         |    31 +-
 utils/skel/src/skel_xml_output.c                   |     2 +-
 utils/skeldump/CMakeLists.txt                      |    13 +
 utils/skeldump/Makefile.am                         |    17 +
 utils/{bpls => skeldump}/Makefile.in               |    81 +-
 utils/{bpls/bpls.c => skeldump/skeldump.c}         |   159 +-
 utils/{bpls/bpls.h => skeldump/skeldump.h}         |    28 +-
 wrappers/numpy/README                              |    17 +-
 wrappers/numpy/adios.cpp                           | 16287 +++++++++++++++++++
 wrappers/numpy/adios.pyx                           |     9 +-
 wrappers/numpy/setup.py                            |    37 +
 538 files changed, 64043 insertions(+), 19379 deletions(-)

-- 
Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-science/packages/adios.git



More information about the debian-science-commits mailing list