[yade] branch wheezy updated (1fee2df -> 8ce97fc)

Anton Gladky gladk at moszumanska.debian.org
Mon Jun 15 04:43:01 UTC 2015


This is an automated email from the git hooks/post-receive script.

gladk pushed a change to branch wheezy
in repository yade.

      from  1fee2df   Remove cgal from BD.
      adds  3bba065   Imported Upstream version 1.12.0
      adds  f64cbd9   Merge tag 'upstream/1.12.0'
      adds  1ac4c00   Remove patch applied by upstream.
      adds  0b5f802   Set Standards-Version: 3.9.6. No changes.
      adds  7e0be6f   Update changelog.
      adds  7b354b5   Close bug by changelog entry.
      adds  07b26ec   Fix lintian warnings.
      adds  24108c8   Use on i386 and kfreebsd-i386 compiler flags to reduce RAM consumption during compilation.
      adds  844cd19   Update changelog.
      adds  5ac2a25   Let yade be built only on specific archs.
       new  df2cda5   Merge.
       new  8ce97fc   Update changelog.

The 2 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 CMakeLists.txt                                     |   23 +-
 ChangeLog                                          |  228 +++-
 RELEASE                                            |    2 +-
 core/Body.cpp                                      |    8 +-
 core/Body.hpp                                      |    6 +-
 core/BodyContainer.cpp                             |    6 +-
 core/BodyContainer.hpp                             |    2 +-
 core/Bound.hpp                                     |    8 +-
 core/Cell.cpp                                      |    2 +-
 core/Cell.hpp                                      |    6 +-
 core/Clump.cpp                                     |    8 +-
 core/Clump.hpp                                     |    8 +-
 core/Dispatcher.hpp                                |    8 +-
 core/EnergyTracker.hpp                             |    4 +-
 core/Engine.hpp                                    |    8 +-
 core/FileGenerator.cpp                             |    6 +-
 core/FileGenerator.hpp                             |    4 +-
 core/ForceContainer.hpp                            |    4 +-
 core/FrontEnd.hpp                                  |    2 +-
 core/Functor.hpp                                   |    6 +-
 core/GLConfig.hpp                                  |    2 +-
 core/IGeom.hpp                                     |    8 +-
 core/IPhys.hpp                                     |    8 +-
 core/Interaction.cpp                               |    2 +-
 core/Interaction.hpp                               |    8 +-
 core/InteractionContainer.cpp                      |    4 +-
 core/InteractionContainer.hpp                      |   41 +-
 core/Material.cpp                                  |    4 +-
 core/Material.hpp                                  |    8 +-
 core/Omega.cpp                                     |    8 +-
 core/Omega.hpp                                     |    6 +-
 core/PartialEngine.hpp                             |    4 +-
 core/Scene.cpp                                     |   12 +-
 core/Scene.hpp                                     |   18 +-
 core/Shape.hpp                                     |    6 +-
 core/SimulationFlow.cpp                            |    2 +-
 core/State.cpp                                     |    2 +-
 core/State.hpp                                     |    6 +-
 core/ThreadRunner.cpp                              |    2 +-
 core/corePlugins.cpp                               |   40 +-
 core/main/pyboot.cpp                               |    4 +-
 debian/changelog                                   |   22 +
 debian/control                                     |    8 +-
 debian/copyright                                   |   20 +-
 debian/patches/03_fix_i386_segfault.patch          |   32 -
 debian/patches/series                              |    1 -
 debian/rules                                       |    2 +-
 debian/source/local-options                        |    1 -
 debian/{upstream => upstream/metadata}             |    0
 doc/references.bib                                 |   61 +-
 doc/sphinx/github.rst                              |    2 +
 doc/sphinx/introduction.rst                        |    2 +-
 doc/sphinx/prog.rst                                |   26 +-
 doc/sphinx/references.bib                          |  330 ------
 doc/sphinx/tutorial/06-periodic-triaxial-test.py   |    4 -
 doc/sphinx/yadeSphinx.py                           |   10 +-
 doc/yade-articles.bib                              |   14 +
 examples/polyhedra/ball.py                         |    2 +-
 examples/polyhedra/free-fall.py                    |    2 +-
 examples/polyhedra/irregular.py                    |    2 +-
 examples/polyhedra/wall.py                         |    2 +-
 examples/sph/dam_break.py                          |   89 ++
 examples/sph/sph_box.py                            |   27 +-
 examples/sph/toystar.py                            |   11 +-
 examples/sph/watercolumn.py                        |   24 +-
 examples/tetra/twoTetrasPoly.py                    |    2 +-
 examples/triax-tutorial/script-session1.py         |    2 +-
 gui/qt4/GLViewer.cpp                               |   14 +-
 gui/qt4/GLViewer.hpp                               |    6 +-
 gui/qt4/GLViewerDisplay.cpp                        |   14 +-
 gui/qt4/GLViewerMouse.cpp                          |   14 +-
 gui/qt4/SerializableEditor.py                      |  119 ++-
 gui/qt4/_GLViewer.cpp                              |    4 +-
 lib/base/Math.cpp                                  |    2 +-
 lib/base/openmp-accu.hpp                           |    2 +-
 lib/factory/ClassFactory.cpp                       |    2 +-
 lib/factory/ClassFactory.hpp                       |    4 +-
 lib/factory/DynLibManager.hpp                      |    4 +-
 lib/multimethods/DynLibDispatcher.hpp              |    4 +-
 lib/multimethods/FunctorWrapper.hpp                |    2 +-
 lib/opengl/GLUtils.hpp                             |    2 +-
 lib/opengl/OpenGLWrapper.hpp                       |    2 +-
 lib/pyutil/gil.cpp                                 |    2 +-
 lib/serialization/Serializable.hpp                 |    8 +-
 lib/smoothing/WeightedAverage2d.hpp                |    2 +-
 lib/triangulation/FlowBoundingSphere.hpp           |   11 +-
 lib/triangulation/FlowBoundingSphere.ipp           |   46 +-
 lib/triangulation/FlowBoundingSphereLinSolv.hpp    |    2 +-
 lib/triangulation/FlowBoundingSphereLinSolv.ipp    |   17 +-
 lib/triangulation/Network.hpp                      |    3 +
 lib/triangulation/Network.ipp                      |   79 ++
 lib/triangulation/PeriodicFlow.hpp                 |   26 +-
 lib/triangulation/RegularTriangulation.h           |    2 +-
 pkg/common/Aabb.hpp                                |    2 +-
 pkg/common/Bo1_Aabb.cpp                            |    2 +-
 pkg/common/Bo1_Aabb.hpp                            |   10 +-
 pkg/common/BoundaryController.hpp                  |    2 +-
 pkg/common/Box.hpp                                 |    2 +-
 pkg/common/Callbacks.hpp                           |    2 +-
 pkg/common/Collider.cpp                            |    2 +-
 pkg/common/Collider.hpp                            |    8 +-
 pkg/common/CylScGeom6D.hpp                         |    2 +-
 pkg/common/Cylinder.cpp                            |    6 +-
 pkg/common/Cylinder.hpp                            |   16 +-
 pkg/common/Dispatching.cpp                         |    4 +-
 pkg/common/Dispatching.hpp                         |   22 +-
 pkg/common/ElastMat.hpp                            |    2 +-
 pkg/common/Facet.hpp                               |    4 +-
 pkg/common/FieldApplier.hpp                        |    2 +-
 pkg/common/ForceEngine.cpp                         |   12 +-
 pkg/common/ForceEngine.hpp                         |    2 +-
 pkg/common/ForceResetter.hpp                       |    4 +-
 pkg/common/GLDrawFunctors.hpp                      |   20 +-
 pkg/common/Gl1_NormPhys.cpp                        |   12 +-
 pkg/common/Gl1_NormPhys.hpp                        |    8 +-
 pkg/common/Gl1_Primitives.cpp                      |    4 +-
 pkg/common/Gl1_Primitives.hpp                      |   10 +-
 pkg/common/GravityEngines.cpp                      |   10 +-
 pkg/common/GravityEngines.hpp                      |    6 +-
 pkg/common/Grid.cpp                                |   46 +-
 pkg/common/Grid.hpp                                |   16 +-
 pkg/common/Grid_GUI.cpp                            |    2 +-
 pkg/common/InsertionSortCollider.cpp               |   53 +-
 pkg/common/InsertionSortCollider.hpp               |    4 +-
 pkg/common/InteractionLoop.hpp                     |    6 +-
 pkg/common/KinematicEngines.cpp                    |    8 +-
 pkg/common/KinematicEngines.hpp                    |    4 +-
 pkg/common/MatchMaker.cpp                          |    2 +-
 pkg/common/MatchMaker.hpp                          |    2 +-
 pkg/common/NormShearPhys.hpp                       |    2 +-
 pkg/common/OpenGLRenderer.cpp                      |   12 +-
 pkg/common/OpenGLRenderer.hpp                      |   10 +-
 pkg/common/ParallelEngine.cpp                      |    2 +-
 pkg/common/ParallelEngine.hpp                      |    2 +-
 pkg/common/PeriodicEngines.hpp                     |   17 +-
 pkg/common/PersistentTriangulationCollider.cpp     |   10 +-
 pkg/common/PersistentTriangulationCollider.hpp     |    6 +-
 pkg/common/PyRunner.hpp                            |    8 +-
 pkg/common/Recorder.hpp                            |    2 +-
 pkg/common/ResetRandomPosition.cpp                 |   12 +-
 pkg/common/ResetRandomPosition.hpp                 |    8 +-
 pkg/common/SPHEngine.cpp                           |  333 +-----
 pkg/common/SPHEngine.hpp                           |   23 +-
 pkg/common/SpatialQuickSortCollider.cpp            |    4 +-
 pkg/common/SpatialQuickSortCollider.hpp            |    4 +-
 pkg/common/Sphere.hpp                              |    2 +-
 pkg/common/StepDisplacer.hpp                       |    6 +-
 pkg/common/TorqueEngine.hpp                        |    4 +-
 pkg/common/Wall.cpp                                |    6 +-
 pkg/common/Wall.hpp                                |    6 +-
 pkg/common/ZECollider.cpp                          |   12 +-
 pkg/common/ZECollider.hpp                          |    4 +-
 pkg/common/common.cpp                              |   32 +-
 pkg/dem/BubbleMat.hpp                              |    8 +-
 pkg/dem/CapillaryPhys.cpp                          |    4 +-
 pkg/dem/CapillaryPhys.hpp                          |   16 +-
 pkg/dem/CapillaryStressRecorder.cpp                |   14 +-
 pkg/dem/CapillaryStressRecorder.hpp                |    2 +-
 pkg/dem/CapillaryTriaxialTest.cpp                  |   60 +-
 pkg/dem/CapillaryTriaxialTest.hpp                  |    4 +-
 pkg/dem/CohesiveFrictionalContactLaw.cpp           |    6 +-
 pkg/dem/CohesiveFrictionalContactLaw.hpp           |   14 +-
 pkg/dem/CohesiveTriaxialTest.cpp                   |   40 +-
 pkg/dem/CohesiveTriaxialTest.hpp                   |    4 +-
 pkg/dem/ConcretePM.cpp                             |   16 +-
 pkg/dem/ConcretePM.hpp                             |   18 +-
 pkg/dem/DemXDofGeom.hpp                            |    2 +-
 pkg/dem/Disp2DPropLoadEngine.cpp                   |    8 +-
 pkg/dem/Disp2DPropLoadEngine.hpp                   |    6 +-
 pkg/dem/DomainLimiter.cpp                          |   26 +-
 pkg/dem/DomainLimiter.hpp                          |    8 +-
 pkg/dem/ElasticContactLaw.cpp                      |   10 +-
 pkg/dem/ElasticContactLaw.hpp                      |   10 +-
 pkg/dem/FacetTopologyAnalyzer.cpp                  |    6 +-
 pkg/dem/FacetTopologyAnalyzer.hpp                  |    4 +-
 pkg/dem/FlatGridCollider.cpp                       |   10 +-
 pkg/dem/FlatGridCollider.hpp                       |    2 +-
 pkg/dem/ForceTorqueRecorder.hpp                    |    4 +-
 pkg/dem/FrictPhys.cpp                              |    2 +-
 pkg/dem/FrictPhys.hpp                              |    8 +-
 pkg/dem/FrictViscoPM.cpp                           |    6 +-
 pkg/dem/FrictViscoPM.hpp                           |   12 +-
 pkg/dem/GeneralIntegratorInsertionSortCollider.cpp |   12 +-
 pkg/dem/GeneralIntegratorInsertionSortCollider.hpp |    2 +-
 pkg/dem/GlobalStiffnessTimeStepper.cpp             |   22 +-
 pkg/dem/GlobalStiffnessTimeStepper.hpp             |    2 +-
 pkg/dem/HertzMindlin.cpp                           |    6 +-
 pkg/dem/HertzMindlin.hpp                           |   20 +-
 pkg/dem/Ig2_Box_Sphere_ScGeom.cpp                  |   10 +-
 pkg/dem/Ig2_Box_Sphere_ScGeom.hpp                  |    6 +-
 pkg/dem/Ig2_Facet_Sphere_ScGeom.cpp                |   14 +-
 pkg/dem/Ig2_Facet_Sphere_ScGeom.hpp                |   10 +-
 pkg/dem/Ig2_Sphere_Sphere_ScGeom.cpp               |   12 +-
 pkg/dem/Ig2_Sphere_Sphere_ScGeom.hpp               |    4 +-
 pkg/dem/InelastCohFrictPM.hpp                      |    6 +-
 pkg/dem/Integrator.cpp                             |    6 +-
 pkg/dem/Integrator.hpp                             |    2 +-
 pkg/dem/Ip2_ElastMat.cpp                           |    4 +-
 pkg/dem/Ip2_ElastMat.hpp                           |    6 +-
 pkg/dem/JointedCohesiveFrictionalPM.cpp            |   76 +-
 pkg/dem/JointedCohesiveFrictionalPM.hpp            |   11 +-
 pkg/dem/KinemC__Engine.cpp                         |    2 +-
 pkg/dem/KinemC__Engine.hpp                         |    2 +-
 pkg/dem/KinemSimpleShearBox.cpp                    |    8 +-
 pkg/dem/KinemSimpleShearBox.hpp                    |    8 +-
 pkg/dem/L3Geom.cpp                                 |   12 +-
 pkg/dem/L3Geom.hpp                                 |   22 +-
 pkg/dem/Law2_ScGeom_CapillaryPhys_Capillarity.cpp  |   81 +-
 pkg/dem/Law2_ScGeom_CapillaryPhys_Capillarity.hpp  |   16 +-
 pkg/dem/LudingPM.cpp                               |   10 +-
 pkg/dem/LudingPM.hpp                               |    8 +-
 pkg/dem/MicroMacroAnalyser.cpp                     |   20 +-
 pkg/dem/MicroMacroAnalyser.hpp                     |    4 +-
 pkg/dem/NewtonIntegrator.cpp                       |   27 +-
 pkg/dem/NewtonIntegrator.hpp                       |   10 +-
 pkg/dem/NormalInelasticPM.cpp                      |    6 +-
 pkg/dem/NormalInelasticPM.hpp                      |    8 +-
 pkg/dem/PeriIsoCompressor.cpp                      |   12 +-
 pkg/dem/PeriIsoCompressor.hpp                      |    2 +-
 pkg/dem/Polyhedra.cpp                              |   57 +-
 pkg/dem/Polyhedra.hpp                              |   65 +-
 pkg/dem/Polyhedra_Ig2.cpp                          |   38 +-
 pkg/dem/Polyhedra_Ig2.hpp                          |    3 +-
 pkg/dem/Polyhedra_splitter.cpp                     |    2 +-
 pkg/dem/Polyhedra_splitter.hpp                     |    4 +-
 pkg/dem/Polyhedra_support.cpp                      |   80 +-
 pkg/dem/RungeKuttaCashKarp54Integrator.cpp         |    4 +-
 pkg/dem/RungeKuttaCashKarp54Integrator.hpp         |    4 +-
 pkg/dem/STLImporter.cpp                            |    4 +-
 pkg/dem/STLImporter.hpp                            |    6 +-
 pkg/dem/SampleCapillaryPressureEngine.cpp          |   10 +-
 pkg/dem/SampleCapillaryPressureEngine.hpp          |    6 +-
 pkg/dem/ScGeom.cpp                                 |    6 +-
 pkg/dem/ScGeom.hpp                                 |   10 +-
 pkg/dem/Shop.hpp                                   |   12 +-
 pkg/dem/Shop_01.cpp                                |   65 +-
 pkg/dem/Shop_02.cpp                                |   82 +-
 pkg/dem/SimpleShear.cpp                            |   48 +-
 pkg/dem/SimpleShear.hpp                            |    2 +-
 pkg/dem/SnapshotEngine.hpp                         |    8 +-
 pkg/dem/SpherePack.cpp                             |  164 +--
 pkg/dem/SpherePack.hpp                             |    4 +-
 pkg/dem/SpheresFactory.cpp                         |    4 +-
 pkg/dem/SpheresFactory.hpp                         |    6 +-
 pkg/dem/TesselationWrapper.cpp                     |    8 +-
 pkg/dem/TesselationWrapper.hpp                     |   12 +-
 pkg/dem/Tetra.cpp                                  |   16 +-
 pkg/dem/Tetra.hpp                                  |   14 +-
 pkg/dem/ThreeDTriaxialEngine.cpp                   |   16 +-
 pkg/dem/ThreeDTriaxialEngine.hpp                   |    6 +-
 pkg/dem/TriaxialCompressionEngine.cpp              |   16 +-
 pkg/dem/TriaxialCompressionEngine.hpp              |    6 +-
 pkg/dem/TriaxialStateRecorder.cpp                  |   16 +-
 pkg/dem/TriaxialStateRecorder.hpp                  |    2 +-
 pkg/dem/TriaxialStressController.cpp               |   47 +-
 pkg/dem/TriaxialStressController.hpp               |    6 +-
 pkg/dem/TriaxialTest.cpp                           |   60 +-
 pkg/dem/TriaxialTest.hpp                           |    2 +-
 pkg/dem/UnbalancedForceCallbacks.cpp               |   10 +-
 pkg/dem/UnbalancedForceCallbacks.hpp               |    4 +-
 pkg/dem/UniaxialStrainer.cpp                       |    6 +-
 pkg/dem/UniaxialStrainer.hpp                       |    6 +-
 pkg/dem/VTKRecorder.cpp                            |   32 +-
 pkg/dem/VTKRecorder.hpp                            |    2 +-
 pkg/dem/ViscoelasticCapillarPM.cpp                 |   25 +-
 pkg/dem/ViscoelasticCapillarPM.hpp                 |    2 +-
 pkg/dem/ViscoelasticPM.cpp                         |   15 +-
 pkg/dem/ViscoelasticPM.hpp                         |   21 +-
 pkg/dem/WirePM.cpp                                 |    8 +-
 pkg/dem/WirePM.hpp                                 |    8 +-
 pkg/lbm/HydrodynamicsLawLBM.cpp                    |   10 +-
 pkg/lbm/HydrodynamicsLawLBM.hpp                    |    8 +-
 pkg/lbm/LBMbody.hpp                                |    4 +-
 pkg/lbm/LBMlink.hpp                                |    4 +-
 pkg/lbm/LBMnode.hpp                                |    4 +-
 pkg/pfv/DFNFlow.cpp                                |  186 +++-
 pkg/pfv/FlowEngine.hpp                             |   18 +
 pkg/pfv/FlowEngine.hpp.in                          |   55 +-
 pkg/pfv/FlowEngine.ipp                             |    1 -
 pkg/pfv/FlowEngine.ipp.in                          |   13 +-
 pkg/pfv/TwoPhaseFlowEngine.cpp                     |  296 ++++++
 pkg/pfv/TwoPhaseFlowEngine.hpp                     |  107 ++
 pkg/pfv/UnsaturatedEngine.cpp                      | 1119 ++++++++++++++++++++
 py/WeightedAverage2d.cpp                           |    2 +-
 py/_polyhedra_utils.cpp                            |   12 +-
 py/_utils.cpp                                      |   76 +-
 py/_utils.hpp                                      |  148 +++
 py/mathWrap/miniEigen.cpp                          |    4 +-
 py/pack/_packObb.cpp                               |    6 +-
 py/pack/_packPredicates.cpp                        |    6 +-
 py/pack/_packSpheres.cpp                           |   18 +-
 py/post2d.py                                       |    7 +-
 py/utils.py                                        |    6 +-
 py/wrapper/customConverters.cpp                    |   21 +-
 py/wrapper/yadeWrapper.cpp                         |   44 +-
 scripts/linkdeps.py                                |    2 +-
 296 files changed, 4200 insertions(+), 2337 deletions(-)
 delete mode 100644 debian/patches/03_fix_i386_segfault.patch
 delete mode 100644 debian/source/local-options
 rename debian/{upstream => upstream/metadata} (100%)
 delete mode 100644 doc/sphinx/references.bib
 create mode 100644 examples/sph/dam_break.py
 delete mode 100644 pkg/pfv/FlowEngine.ipp
 create mode 100644 pkg/pfv/TwoPhaseFlowEngine.cpp
 create mode 100644 pkg/pfv/TwoPhaseFlowEngine.hpp
 create mode 100644 pkg/pfv/UnsaturatedEngine.cpp
 create mode 100644 py/_utils.hpp

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