[liggghts] 04/05: Merge.
Anton Gladky
gladk at moszumanska.debian.org
Mon Jun 22 18:21:36 UTC 2015
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gladk pushed a commit to branch master
in repository liggghts.
commit f0b353f2b15801801a5ce717dc85255567b23fb0
Merge: b81a33d 9d49744
Author: Anton Gladky <gladk at debian.org>
Date: Mon Jun 22 18:16:37 2015 +0200
Merge.
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src/multi_node_mesh_parallel.h | 60 +-
src/multi_node_mesh_parallel_I.h | 60 +-
src/multi_node_mesh_parallel_buffer_I.h | 60 +-
src/multi_vector_container.h | 69 +-
src/my_page.h | 60 +-
src/my_pool_chunk.h | 52 +-
src/neigh_bond.cpp | 72 +-
src/neigh_bond.h | 52 +-
src/neigh_derive.cpp | 92 +-
src/neigh_derive.h | 48 +-
src/neigh_full.cpp | 52 +-
src/neigh_full.h | 48 +-
src/neigh_gran.cpp | 243 +-
src/neigh_gran.h | 54 +-
src/neigh_half_bin.cpp | 52 +-
src/neigh_half_bin.h | 48 +-
src/neigh_half_multi.cpp | 52 +-
src/neigh_half_multi.h | 48 +-
src/neigh_half_nsq.cpp | 52 +-
src/neigh_half_nsq.h | 48 +-
src/neigh_list.cpp | 58 +-
src/neigh_list.h | 58 +-
src/neigh_request.cpp | 52 +-
src/neigh_request.h | 52 +-
src/neigh_respa.cpp | 52 +-
src/neigh_respa.h | 48 +-
src/neigh_stencil.cpp | 52 +-
src/neighbor.cpp | 75 +-
src/neighbor.h | 74 +-
src/normal_model_hertz.h | 108 +-
src/normal_model_hertz_stiffness.h | 106 +-
src/normal_model_hooke.h | 123 +-
src/normal_model_hooke_hysteresis.h | 122 +-
src/normal_model_hooke_stiffness.h | 101 +-
src/os_specific.h | 54 +-
src/output.cpp | 71 +-
src/output.h | 52 +-
src/pack.h | 54 +-
src/pair.cpp | 52 +-
src/pair.h | 56 +-
src/pair_beck.cpp | 363 -
src/pair_beck.h | 72 -
src/pair_born.cpp | 438 -
src/pair_born.h | 76 -
src/pair_born_coul_wolf.cpp | 492 -
src/pair_born_coul_wolf.h | 80 -
src/pair_buck.cpp | 406 -
src/pair_buck.h | 75 -
src/pair_buck_coul_cut.cpp | 472 -
src/pair_buck_coul_cut.h | 80 -
src/pair_coul_cut.cpp | 308 -
src/pair_coul_cut.h | 71 -
src/pair_coul_debye.cpp | 180 -
src/pair_coul_debye.h | 53 -
src/pair_coul_dsf.cpp | 335 -
src/pair_coul_dsf.h | 72 -
src/pair_coul_wolf.cpp | 323 -
src/pair_coul_wolf.h | 69 -
src/pair_dpd.cpp | 405 -
src/pair_dpd.h | 85 -
src/pair_dpd_tstat.cpp | 307 -
src/pair_dpd_tstat.h | 62 -
src/pair_gauss.cpp | 331 -
src/pair_gauss.h | 73 -
src/pair_gran.cpp | 91 +-
src/pair_gran.h | 73 +-
src/pair_gran_base.h | 201 +-
src/pair_gran_proxy.cpp | 52 +-
src/pair_gran_proxy.h | 52 +-
src/pair_hybrid.cpp | 52 +-
src/pair_hybrid.h | 52 +-
src/pair_hybrid_overlay.cpp | 52 +-
src/pair_hybrid_overlay.h | 52 +-
src/pair_lj96_cut.cpp | 727 -
src/pair_lj96_cut.h | 82 -
src/pair_lj_cubic.cpp | 358 -
src/pair_lj_cubic.h | 80 -
src/pair_lj_cut.cpp | 730 -
src/pair_lj_cut.h | 82 -
src/pair_lj_cut_coul_cut.cpp | 470 -
src/pair_lj_cut_coul_cut.h | 76 -
src/pair_lj_cut_coul_debye.cpp | 222 -
src/pair_lj_cut_coul_debye.h | 54 -
src/pair_lj_cut_coul_dsf.cpp | 473 -
src/pair_lj_cut_coul_dsf.h | 77 -
src/pair_lj_expand.cpp | 429 -
src/pair_lj_expand.h | 71 -
src/pair_lj_gromacs.cpp | 442 -
src/pair_lj_gromacs.h | 70 -
src/pair_lj_gromacs_coul_gromacs.cpp | 509 -
src/pair_lj_gromacs_coul_gromacs.h | 76 -
src/pair_lj_smooth.cpp | 456 -
src/pair_lj_smooth.h | 71 -
src/pair_lj_smooth_linear.cpp | 350 -
src/pair_lj_smooth_linear.h | 68 -
src/pair_mie_cut.cpp | 743 -
src/pair_mie_cut.h | 81 -
src/pair_morse.cpp | 347 -
src/pair_morse.h | 76 -
src/pair_soft.cpp | 54 +-
src/pair_soft.h | 52 +-
src/pair_sph.cpp | 66 +-
src/pair_sph.h | 66 +-
src/pair_sph_artvisc_tenscorr.cpp | 51 +-
src/pair_sph_artvisc_tenscorr.h | 51 +-
src/pair_table.cpp | 987 -
src/pair_table.h | 147 -
src/pair_yukawa.cpp | 338 -
src/pair_yukawa.h | 69 -
src/pair_zbl.cpp | 435 -
src/pair_zbl.h | 84 -
src/particleToInsert.cpp | 145 +-
src/particleToInsert.h | 65 +-
src/pointers.h | 54 +-
src/primitive_wall.h | 53 +-
src/primitive_wall_definitions.h | 52 +-
src/probability_distribution.h | 60 +-
src/procmap.cpp | 52 +-
src/procmap.h | 52 +-
src/properties.cpp | 58 +-
src/properties.h | 58 +-
src/property_registry.cpp | 69 +-
src/property_registry.h | 68 +-
src/random_mars.cpp | 52 +-
src/random_mars.h | 48 +-
src/random_park.cpp | 52 +-
src/random_park.h | 48 +-
src/read_data.cpp | 187 +-
src/read_data.h | 77 +-
src/read_dump.cpp | 52 +-
src/read_dump.h | 56 +-
src/read_restart.cpp | 52 +-
src/read_restart.h | 52 +-
src/reader.cpp | 48 +-
src/reader.h | 56 +-
src/reader_native.cpp | 52 +-
src/reader_native.h | 54 +-
src/reader_xyz.cpp | 52 +-
src/reader_xyz.h | 56 +-
src/region.cpp | 72 +-
src/region.h | 72 +-
src/region_block.cpp | 52 +-
src/region_block.h | 52 +-
src/region_cone.cpp | 52 +-
src/region_cone.h | 52 +-
src/region_cylinder.cpp | 52 +-
src/region_cylinder.h | 52 +-
src/region_intersect.cpp | 56 +-
src/region_intersect.h | 52 +-
src/region_mesh_tet.cpp | 60 +-
src/region_mesh_tet.h | 60 +-
src/region_mesh_tet_I.h | 60 +-
src/region_plane.cpp | 52 +-
src/region_plane.h | 52 +-
src/region_prism.cpp | 52 +-
src/region_prism.h | 52 +-
src/region_sphere.cpp | 52 +-
src/region_sphere.h | 52 +-
src/region_union.cpp | 56 +-
src/region_union.h | 52 +-
src/region_wedge.cpp | 55 +-
src/region_wedge.h | 55 +-
src/replicate.cpp | 54 +-
src/replicate.h | 52 +-
src/rerun.cpp | 52 +-
src/rerun.h | 52 +-
src/respa.cpp | 52 +-
src/respa.h | 54 +-
src/rolling_model_cdt.h | 106 +-
src/rolling_model_epsd.h | 133 +-
src/rolling_model_epsd2.h | 127 +-
src/rotate.cpp | 59 +
src/rotate.h | 66 +
src/run.cpp | 52 +-
src/run.h | 52 +-
src/scalar_container.h | 53 +-
src/set.cpp | 232 +-
src/set.h | 72 +-
src/settings.h | 52 +-
src/special.cpp | 52 +-
src/special.h | 52 +-
src/sph_kernel_cubicspline.h | 64 +-
src/sph_kernel_cubicspline2D.h | 53 +-
src/sph_kernel_spiky.h | 51 +-
src/sph_kernel_spiky2D.h | 69 +-
src/sph_kernel_wendland.h | 51 +-
src/sph_kernel_wendland2D.h | 64 +-
src/sph_kernels.h | 64 +-
src/style_atom.h | 2 -
src/style_command.h | 1 +
src/style_compute.h | 17 +-
src/style_dump.h | 3 -
src/style_fix.h | 36 +-
src/style_integrate.h | 1 -
src/style_minimize.h | 4 -
src/style_pair.h | 28 -
src/suffix.h | 48 +-
src/superquadric.h | 48 +
src/surface_mesh.h | 53 +-
src/surface_mesh_I.h | 53 +-
src/surface_model_default.h | 131 +-
src/tangential_model_history.h | 121 +-
src/tangential_model_no_history.h | 106 +-
src/tet_mesh.cpp | 54 +
src/tet_mesh.h | 80 +
src/tet_mesh_I.h | 208 +
src/thermo.cpp | 716 +-
src/thermo.h | 100 +-
src/timer.cpp | 52 +-
src/timer.h | 48 +-
src/tracking_mesh.h | 60 +-
src/tracking_mesh_I.h | 53 +-
src/tri_line.h | 5 +
src/tri_mesh.cpp | 60 +-
src/tri_mesh.h | 73 +-
src/tri_mesh_I.h | 64 +-
src/tri_mesh_planar.cpp | 60 +-
src/tri_mesh_planar.h | 60 +-
src/tri_mesh_planar_I.h | 60 +-
src/universe.cpp | 72 +-
src/universe.h | 52 +-
src/update.cpp | 52 +-
src/update.h | 52 +-
src/utils.h | 51 +-
src/variable.cpp | 58 +-
src/variable.h | 54 +-
src/vector_container.h | 117 +-
src/vector_liggghts.h | 105 +-
src/velocity.cpp | 361 +-
src/velocity.h | 62 +-
src/verlet.cpp | 72 +-
src/verlet.h | 58 +-
src/verlet_implicit.cpp | 174 -
src/verlet_implicit.h | 58 -
src/version_liggghts.h | 2 +-
src/version_liggghts.txt | 2 +-
src/volume_mesh.h | 60 +-
src/volume_mesh_I.h | 60 +-
src/write_data.cpp | 52 +-
src/write_data.h | 52 +-
src/write_dump.cpp | 54 +-
src/write_dump.h | 54 +-
src/write_restart.cpp | 72 +-
src/write_restart.h | 72 +-
3071 files changed, 83350 insertions(+), 956030 deletions(-)
diff --cc src/comm.h
index c25c8e3,3e3cfae..8bbd245
--- a/src/comm.h
+++ b/src/comm.h
@@@ -147,11 -179,10 +179,13 @@@ class Comm : protected Pointers
virtual void allocate_multi(int); // allocate multi arrays
virtual void free_swap(); // free swap arrays
virtual void free_multi(); // free multi arrays
+ virtual void exchangeEventsRecorder(); // Recorder for Exchange events
+ virtual void exchangeEventsCorrector(); // Corrects receiving process ids
+<<<<<<< HEAD
+=======
bool use_gran_opt();
+>>>>>>> upstream/3.0.0
bool decide(int i,int dim,double lo,double hi,int ineed);
bool decide_wedge(int i,int dim,double lo,double hi,int ineed);
diff --cc src/fix_massflow_mesh.cpp
index 882bfde,1eb887a..0f22111
--- a/src/fix_massflow_mesh.cpp
+++ b/src/fix_massflow_mesh.cpp
@@@ -425,13 -460,11 +460,15 @@@ void FixMassflowMesh::post_integrate(
}
if(delete_atoms_)
+<<<<<<< HEAD
+ atom_tags_delete_.push_back(atom->tag[iPart]);
+=======
{
+ //reset counter to avoid problems with other fixes & mark to be deleted
+ counter[iPart] = -1.0;
atom_tags_delete_.push_back(atom->tag[iPart]);
}
+>>>>>>> upstream/3.0.0
if (screenflag_ && screen)
fprintf(screen," %d %4.4g %4.4g %4.4g %4.4g %4.4g %4.4g %4.4g \n ",
--
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