[freefempp] branch master updated (5639b0a -> 3a40460)
Dimitrios Eftaxiopoulos
eftaxiop-guest at moszumanska.debian.org
Sun May 17 10:42:54 UTC 2015
This is an automated email from the git hooks/post-receive script.
eftaxiop-guest pushed a change to branch master
in repository freefempp.
from 5639b0a Prepare for release
adds e5ed43c Recover the branch
adds b7ce84f Edit d/watch file to fix broken downloaded upstream tarball
adds 19a7cf2 Imported Upstream version 3.32.1
adds c5a5e55 Merge tag 'upstream/3.32.1'
adds 1c41a03 Update d/changelog
adds 9ba24ca Update standards version
adds 79d51dd Set release distribution to experimental
adds d7a136b Final local build
adds 359f909 Merge branch 'experimental' of ssh://alioth.debian.org/git/debian-science/packages/freefempp into experimental
adds 3206529 Imported Upstream version 3.34.2
adds 2641d68 Merge tag 'upstream/3.34.2' into experimental
adds 21b4f37 Imported Upstream version 3.35
adds 14b00b6 Merge tag 'upstream/3.35' into experimental
adds 4e1ce2a Update d/changelog
adds bcf5b34 Refresh examples++-load.patch
adds 348ddc8 Update d/changelog
adds f11fe08 Exclude the Apple ._* files from the upstream tarball
adds 12a4ddf Imported Upstream version 3.36
adds f325eec Merge tag 'upstream/3.36' into experimental
adds ad3a3a1 Fix d/copyright according to DEP5
adds 7d1a244 Prepare d/changelog for release
adds 5cd86f8 Imported Upstream version 3.36.1
adds bc4b902 Merge tag 'upstream/3.36.1' into experimental
adds 5c815e1 Remove d/changelog section on src/Algo directory
new f9253ee Imported Upstream version 3.37
new 1b704d4 Merge tag 'upstream/3.37'
new 1835e5c Update d/changelog
new eb4e0ee Update examples++-load.patch to avoid FTBFS
new 3a40460 Prepare for upload to unstable
The 5 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails. The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.
Summary of changes:
._TODO | Bin 171 -> 0 bytes
.gitignore | 5 +-
DOC/freefem++doc.pdf | Bin 9573635 -> 9566844 bytes
HISTORY | 3315 ++++++++++++++------
INNOVATION | 281 +-
Makefile.am | 40 +-
README | 4 +-
README_MAC | 22 +-
WindowsPackage.m4 | 2 +-
acmacros.m4 | 6 +-
acmpi.m4 | 149 +-
acoptim.m4 | 15 +-
ax_lib_gsl.m4 | 162 +
ax_lib_hdf5.m4 | 309 ++
build/download | 2 +-
config.h.in | 217 ++
configure.ac | 211 +-
debian/changelog | 37 +
debian/control | 4 +-
debian/copyright | 137 +-
debian/patches/examples++-load.patch | 15 +-
debian/source/options | 2 +-
debian/watch | 5 +-
download/Makefile | 903 ------
download/Makefile.am | 44 +-
download/arpack/Makefile | 89 +-
download/arpack/Makefile.am | 5 +-
download/arpack/veclib_zdotc.f | 36 +
download/{bin/ff-pkg-download => bin} | 2 +-
download/bin/ff-get-dep | 76 -
download/blas/Makefile | 85 +-
download/blas/Makefile.am | 3 +
download/blas/opendownload.done | 0
download/fftw/Makefile | 82 +-
download/getall | 48 +-
download/gmm/cxxflags | 21 +-
download/hips/makefile-hips.inc | 8 +-
download/ipopt/Makefile | 2 +-
download/metis/Makefile | 37 +-
download/metis/Makefile-metis.in | 1 +
download/mmg3d/Makefile | 2 +-
download/mumps-seq/Makefile | 4 +-
...e-mumps-4.10.0.inc => Makefile-mumps-5.0.0.inc} | 4 +-
download/mumps/MUMPS_4.10.0.patch | 31 -
download/mumps/Makefile | 10 +-
...e-mumps-4.10.0.inc => Makefile-mumps-5.0.0.inc} | 11 +-
download/nlopt/Make.inc | 3 +-
download/nlopt/Makefile | 4 +-
download/parmetis/Makefile-parmetis.in | 16 +-
download/parmetis/makefile | 89 +-
download/parmetis/parmetis-3.1.1.patch | 21 -
download/parmetis/parmetis-4.0.3.patch | 32 +
download/parms/makefile-parms.in | 2 +-
download/pastix/Makefile | 25 +-
download/pastix/config-pastix-complex.in | 8 +-
download/pastix/config-pastix-real.in | 8 +-
download/pastix/patch-pastix_long_complex.h | 19 +-
download/scalapack/SLmake-scalapack.inc | 2 +-
download/scotch/Makefile | 29 +-
download/scotch/Makefile-scotch.inc | 23 +-
download/scotch/scotch_5.1_esmumps.patch | 217 --
download/scotch/scotch_6.0.3.patch | 11 +
download/superludist/make-superlu.inc | 2 +-
download/umfpack/Makefile | 90 +-
download/umfpack/Makefile.am | 4 +-
download/yams/Makefile | 2 +-
download/yams/makefile-yams.inc | 2 +-
examples++-3d/._MeshSurface.idp | Bin 171 -> 0 bytes
examples++-3d/Lac.edp | 2 +-
examples++-3d/Makefile.am | 2 +-
examples++-3d/Period-Poisson-cube-ballon.edp | 4 +-
examples++-3d/TruncLac.edp | 2 +-
examples++-3d/sphere6.edp | 2 +-
examples++-chapt3/NSprojection-Opt.edp | 148 +
examples++-chapt3/NSprojection.edp | 109 +-
examples++-eigen/._BeamEigenValue.edp | Bin 171 -> 0 bytes
examples++-eigen/._free-cyl-axi.edp | Bin 171 -> 0 bytes
examples++-eigen/LapEigenValue.edp | 2 +-
examples++-eigen/LapnosymEigenValue.edp | 2 +-
examples++-eigen/Makefile.am | 2 +-
examples++-eigen/Stokes-eigen.edp | 2 +-
examples++-eigen/all.edp | 16 +
examples++-eigen/testeigen.edp | 25 -
examples++-load/._bfstream.cpp | Bin 171 -> 0 bytes
examples++-load/._bilapP3-hct-like.edp | Bin 171 -> 0 bytes
examples++-load/._lapack.cpp | Bin 171 -> 0 bytes
examples++-load/._msh3.hpp | Bin 171 -> 0 bytes
examples++-load/BinaryIO.cpp | 7 +-
examples++-load/ClosePoints.cpp | 88 +
examples++-load/ClosePoints.edp | 57 +
examples++-load/DxWriter.cpp | 7 +-
examples++-load/Element_Mixte.cpp | 401 ++-
examples++-load/Element_PkEdge.cpp | 38 +-
examples++-load/FreeFemQA.cpp | 7 +-
examples++-load/LapMUMPS_seq.edp | 2 +-
examples++-load/{MUMPS_seq.cpp => MUMPS.cpp} | 0
examples++-load/Makefile.am | 50 +-
examples++-load/MetricKuate.cpp | 7 +-
examples++-load/MetricPk.cpp | 7 +-
examples++-load/NewSolver.cpp | 7 +-
examples++-load/PARDISO.cpp | 37 +-
examples++-load/SuperLu.cpp | 10 +-
examples++-load/VTK_writer.cpp | 7 +-
examples++-load/VTK_writer_3d.cpp | 7 +-
examples++-load/addNewType.cpp | 7 +-
examples++-load/aniso.cpp | 137 +
examples++-load/bfstream.cpp | 2 +-
examples++-load/bmo.cpp | 4 +-
examples++-load/dfft.cpp | 9 +-
examples++-load/exactpartition.cpp | 119 +
examples++-load/exactpartition.edp | 30 +
examples++-load/ff-AiryBiry.cpp | 125 +
examples++-load/ff-Ipopt.cpp | 13 +-
examples++-load/ff-NLopt.cpp | 7 +-
examples++-load/ff-cmaes.cpp | 7 +-
examples++-load/ff-get-dep.awk | 52 +
examples++-load/ff-get-dep.in | 52 +-
examples++-load/ff_gsl_awk.hpp | 63 +-
examples++-load/fflapack.cpp | 15 +-
examples++-load/ffnewuoa.cpp | 7 +-
examples++-load/ffrandom.cpp | 4 +-
examples++-load/ffrandom.edp | 8 +-
examples++-load/freeyams.cpp | 7 +-
examples++-load/funcTemplate.cpp | 7 +-
examples++-load/gmsh.cpp | 62 +-
examples++-load/gsl.awk | 2 +-
examples++-load/gsl.cpp | 7 +-
examples++-load/gsl.idp | 15 +
examples++-load/ilut.cpp | 24 +-
examples++-load/include.tar.gz | Bin 1899 -> 1906 bytes
.../beam.edp => examples++-load/iohd5-beam-2d.edp | 4 +-
.../iohd5-beam-3d.edp | 7 +-
examples++-load/iohdf5.cpp | 734 +++++
examples++-load/iovtk.cpp | 93 +-
examples++-load/isolineP1.cpp | 7 +-
examples++-load/lapack.cpp | 15 +-
examples++-load/lgbmo.cpp | 7 +-
examples++-load/load.link.in | 26 +-
examples++-load/mat_dervieux.cpp | 7 +-
examples++-load/mat_psi.cpp | 8 +-
examples++-load/medit.cpp | 11 +-
examples++-load/metis.cpp | 24 +-
examples++-load/mmg3d-v4.0.cpp | 7 +-
examples++-load/msh3.cpp | 40 +-
examples++-load/mshmet.cpp | 7 +-
examples++-load/myfunction2.cpp | 7 +-
examples++-load/pcm2rnm.cpp | 7 +-
examples++-load/pipe.cpp | 6 +-
examples++-load/ppm2rnm.cpp | 7 +-
examples++-load/qf11to25.cpp | 9 +-
examples++-load/scotch.cpp | 84 +-
examples++-load/shell.cpp | 10 +-
examples++-load/splitedges.cpp | 11 +-
examples++-load/splitmesh3.cpp | 9 +-
examples++-load/splitmesh6.cpp | 9 +-
examples++-load/symmetrizeCSR.cpp | 6 +-
examples++-load/testFE-PkEdge.edp | 23 +-
examples++-load/tetgen.cpp | 7 +-
examples++-load/thresholdings.cpp | 9 +-
examples++-mpi/._DDM-NSUzawaCahouetChabart.edp | Bin 171 -> 0 bytes
examples++-mpi/._DDM-Schwarz-macro.idp | Bin 171 -> 0 bytes
examples++-mpi/._hips_FreeFem.cpp | Bin 171 -> 0 bytes
examples++-mpi/DDM-Schwarz-Lame-2d.edp | 2 +-
examples++-mpi/DDM-Schwarz-Lame-3d.edp | 2 +-
examples++-mpi/DDM-Schwarz-Lap-2dd.edp | 10 +-
examples++-mpi/DDM-Schwarz-Lap-3d.edp | 2 +-
examples++-mpi/DDM-Schwarz-Stokes-2d.edp | 2 +-
examples++-mpi/DDM-Schwarz-macro.idp | 68 +-
examples++-mpi/DDM-funcs-v2.idp | 1 +
examples++-mpi/Heat3d.idp | 2 +-
examples++-mpi/MPICG.cpp | 6 +-
examples++-mpi/MPIGMRES2D.edp | 2 +-
examples++-mpi/MPIGMRES3D.edp | 2 +-
examples++-mpi/MPIplot.idp | 3 +
examples++-mpi/MUMPS.cpp | 5 +-
examples++-mpi/MUMPS_FreeFem.cpp | 13 +-
examples++-mpi/Makefile.am | 17 +-
examples++-mpi/NSCaraCyl.edp | 336 ++
examples++-mpi/PETSc.hpp | 351 +++
examples++-mpi/Stokes-v1-matrix-mumps.edp | 2 +-
examples++-mpi/Stokes-v1-matrix-superludist.edp | 2 +-
examples++-mpi/additional.idp | 172 +
examples++-mpi/complex_SuperLU_DIST_FreeFem.cpp | 14 +-
examples++-mpi/complex_pastix_FreeFem.cpp | 12 +-
examples++-mpi/dSuperLU_DIST.cpp | 12 +-
examples++-mpi/diffusion-3d.edp | 183 ++
examples++-mpi/elasticity-3d.edp | 196 ++
examples++-mpi/func-max.idp | 72 +
examples++-mpi/hips_FreeFem.cpp | 18 +-
examples++-mpi/hypre_FreeFem.cpp | 14 +-
examples++-mpi/interfacepastix.cpp | 10 +-
examples++-mpi/mpi-cmaes.cpp | 8 +-
examples++-mpi/parms_FreeFem.cpp | 38 +-
examples++-mpi/real_SuperLU_DIST_FreeFem.cpp | 13 +-
examples++-mpi/real_pastix_FreeFem.cpp | 9 +-
examples++-mpi/removeDOF.cpp | 275 ++
examples++-mpi/{schwarz.edp => schwarz-2d.edp} | 0
examples++-mpi/schwarz-add-macro.idp | 214 ++
examples++-mpi/schwarz-macro.idp | 244 ++
examples++-mpi/schwarz.cpp | 647 ++++
examples++-mpi/schwarz.edp | 119 +-
examples++-mpi/stokes-2d.edp | 55 +
examples++-mpi/utility.cpp | 362 +++
examples++-tutorial/._string.edp | Bin 171 -> 0 bytes
examples++-tutorial/FE.edp | 2 +
examples++-tutorial/Makefile.am | 2 +-
examples++-tutorial/NSUzawaCahouetChabart.edp | 8 +-
examples++-tutorial/array.edp | 7 +-
examples++-tutorial/calculus.edp | 2 +
examples++-tutorial/cavityNewtow.edp | 8 +-
examples++-tutorial/mesh-internal.edp | 47 +
examples++-tutorial/sparse-cmatrix.edp | 3 +
examples++-tutorial/sparse-matrix.edp | 3 +
examples++/._NSP1P2.edp | Bin 171 -> 0 bytes
src/Graphics/._ffglut.cpp | Bin 167 -> 0 bytes
src/Graphics/._getprog-unix.hpp | Bin 171 -> 0 bytes
src/Graphics/ff-win32.cpp | 2 +-
src/Graphics/ffglut.cpp | 3 +-
src/Graphics/getprog-unix.hpp | 15 +-
src/Graphics/gggg.cpp | 65 +
src/Graphics/sansrgraph.cpp | 3 +-
src/bamg/Makefile.am | 8 +-
src/bamglib/._Metric.cpp | Bin 167 -> 0 bytes
src/bamglib/._QuadTree.cpp | Bin 167 -> 0 bytes
src/bamglib/Makefile.am | 2 +-
src/bamglib/Mesh2.cpp | 15 +-
src/bamglib/Mesh2.h | 27 +-
src/bamglib/MeshWrite.cpp | 1710 +++++-----
src/bamglib/meshtype.h | 2 +-
src/bamglib/write_hdf5.cpp | 506 +++
src/bamglib/write_hdf5.hpp | 57 +
src/bamglib/write_xdmf.cpp | 265 ++
src/bamglib/write_xdmf.hpp | 41 +
src/bin-win32/Makefile.am | 21 +-
src/bin-win32/launchff++.cpp | 25 +-
src/femlib/._BamgFreeFem.cpp | Bin 167 -> 0 bytes
src/femlib/._CGNL.hpp | Bin 171 -> 0 bytes
src/femlib/._QuadratureFormular.hpp | Bin 171 -> 0 bytes
src/femlib/._R1.hpp | Bin 171 -> 0 bytes
src/femlib/._R2.hpp | Bin 171 -> 0 bytes
src/femlib/._R3.hpp | Bin 171 -> 0 bytes
src/femlib/._gmres.hpp | Bin 171 -> 0 bytes
src/femlib/BamgFreeFem.cpp | 75 +-
src/femlib/BamgFreeFem.hpp | 2 +-
src/femlib/CheckPtr.cpp | 10 +-
src/femlib/Drawing.cpp | 2 +-
src/femlib/GenericMesh.hpp | 32 +-
src/femlib/MatriceCreuse.hpp | 45 +-
src/femlib/MatriceCreuse_tpl.hpp | 58 +-
src/femlib/Mesh3dn.cpp | 30 +-
src/femlib/QuadratureFormular.cpp | 2 +-
src/femlib/RNM.hpp | 98 +-
src/femlib/RNM_op.hpp | 15 +-
src/femlib/RefCounter.hpp | 4 +-
src/femlib/fem.cpp | 8 +-
src/fflib/._AFunction.hpp | Bin 167 -> 0 bytes
src/fflib/._AFunction2.cpp | Bin 170 -> 0 bytes
src/fflib/._lex.cpp | Bin 170 -> 0 bytes
src/fflib/._lgsolver.hpp | Bin 171 -> 0 bytes
src/fflib/._load.cpp | Bin 170 -> 0 bytes
src/fflib/AFunction.cpp | 86 +-
src/fflib/AFunction.hpp | 22 +-
src/fflib/AFunction2.cpp | 37 +-
src/fflib/AFunction_ext.hpp | 10 +-
src/fflib/CodeAlloc.hpp | 2 +
src/fflib/InitFunct.hpp | 6 +-
src/fflib/Makefile.am | 3 +-
src/fflib/Operator.hpp | 8 +-
src/fflib/P1IsoValue.cpp | 22 +-
src/fflib/P1IsoValue.hpp | 8 +-
src/fflib/PlotStream.hpp | 2 +-
src/fflib/array_complex.cpp | 4 +-
src/fflib/array_long.cpp | 14 +-
src/fflib/array_real.cpp | 16 +-
src/fflib/array_tlp.hpp | 90 +-
src/fflib/environment.cpp | 11 +-
src/fflib/ffapi.cpp | 104 +-
src/fflib/ffapi.hpp | 48 +-
src/fflib/ffstack.hpp | 10 +-
src/fflib/global.cpp | 74 +
src/fflib/lex.cpp | 2 +-
src/fflib/lgfem.cpp | 89 +-
src/fflib/lgfem.hpp | 10 +-
src/fflib/lgmat.cpp | 333 +-
src/fflib/lgmesh.cpp | 52 +-
src/fflib/lgmesh3.cpp | 3 +-
src/fflib/load.cpp | 157 +-
src/fflib/problem.cpp | 89 +-
src/fflib/problem.hpp | 14 +-
src/fflib/strversionnumber.cpp | 4 +-
src/lglib/lg.tab.cpp | 434 +--
src/lglib/lg.tab.hpp | 2 +-
src/lglib/lg.ypp | 40 +-
src/lglib/mymain.cpp | 6 +-
src/medit/._keyboard.c | Bin 171 -> 0 bytes
src/medit/._mouse.c | Bin 171 -> 0 bytes
src/medit/._sproto.h | Bin 171 -> 0 bytes
src/mpi/ff-mpirun.in | 8 +-
src/mpi/parallelempi.cpp | 25 +-
src/solver/hypre_FreeFem.cpp | 2 +-
test-driver-ff => test-driver | 38 +-
301 files changed, 13632 insertions(+), 5094 deletions(-)
delete mode 100644 ._TODO
create mode 100644 ax_lib_gsl.m4
create mode 100644 ax_lib_hdf5.m4
create mode 100644 config.h.in
delete mode 100644 download/Makefile
create mode 100644 download/arpack/veclib_zdotc.f
rename download/{bin/ff-pkg-download => bin} (99%)
delete mode 100755 download/bin/ff-get-dep
delete mode 100644 download/blas/opendownload.done
rename download/mumps-seq/{Makefile-mumps-4.10.0.inc => Makefile-mumps-5.0.0.inc} (97%)
delete mode 100644 download/mumps/MUMPS_4.10.0.patch
rename download/mumps/{Makefile-mumps-4.10.0.inc => Makefile-mumps-5.0.0.inc} (94%)
delete mode 100644 download/parmetis/parmetis-3.1.1.patch
create mode 100644 download/parmetis/parmetis-4.0.3.patch
delete mode 100644 download/scotch/scotch_5.1_esmumps.patch
create mode 100644 download/scotch/scotch_6.0.3.patch
delete mode 100644 examples++-3d/._MeshSurface.idp
create mode 100755 examples++-chapt3/NSprojection-Opt.edp
delete mode 100644 examples++-eigen/._BeamEigenValue.edp
delete mode 100644 examples++-eigen/._free-cyl-axi.edp
delete mode 100644 examples++-eigen/testeigen.edp
delete mode 100644 examples++-load/._bfstream.cpp
delete mode 100644 examples++-load/._bilapP3-hct-like.edp
delete mode 100644 examples++-load/._lapack.cpp
delete mode 100755 examples++-load/._msh3.hpp
create mode 100644 examples++-load/ClosePoints.cpp
create mode 100644 examples++-load/ClosePoints.edp
copy examples++-load/{MUMPS_seq.cpp => MUMPS.cpp} (100%)
mode change 100755 => 100644 examples++-load/PARDISO.cpp
create mode 100644 examples++-load/aniso.cpp
create mode 100644 examples++-load/exactpartition.cpp
create mode 100644 examples++-load/exactpartition.edp
create mode 100644 examples++-load/ff-AiryBiry.cpp
create mode 100644 examples++-load/ff-get-dep.awk
copy examples++-tutorial/beam.edp => examples++-load/iohd5-beam-2d.edp (90%)
copy examples++-3d/beam-3d.edp => examples++-load/iohd5-beam-3d.edp (87%)
create mode 100644 examples++-load/iohdf5.cpp
delete mode 100644 examples++-mpi/._DDM-NSUzawaCahouetChabart.edp
delete mode 100644 examples++-mpi/._DDM-Schwarz-macro.idp
delete mode 100644 examples++-mpi/._hips_FreeFem.cpp
mode change 100755 => 100644 examples++-mpi/MUMPS.cpp
create mode 100644 examples++-mpi/NSCaraCyl.edp
create mode 100755 examples++-mpi/PETSc.hpp
create mode 100755 examples++-mpi/additional.idp
create mode 100755 examples++-mpi/diffusion-3d.edp
create mode 100755 examples++-mpi/elasticity-3d.edp
create mode 100644 examples++-mpi/func-max.idp
create mode 100644 examples++-mpi/removeDOF.cpp
copy examples++-mpi/{schwarz.edp => schwarz-2d.edp} (100%)
create mode 100755 examples++-mpi/schwarz-add-macro.idp
create mode 100644 examples++-mpi/schwarz-macro.idp
create mode 100644 examples++-mpi/schwarz.cpp
create mode 100755 examples++-mpi/stokes-2d.edp
create mode 100644 examples++-mpi/utility.cpp
delete mode 100644 examples++-tutorial/._string.edp
create mode 100644 examples++-tutorial/mesh-internal.edp
delete mode 100644 examples++/._NSP1P2.edp
delete mode 100644 src/Graphics/._ffglut.cpp
delete mode 100644 src/Graphics/._getprog-unix.hpp
delete mode 100644 src/bamglib/._Metric.cpp
delete mode 100644 src/bamglib/._QuadTree.cpp
create mode 100644 src/bamglib/write_hdf5.cpp
create mode 100644 src/bamglib/write_hdf5.hpp
create mode 100644 src/bamglib/write_xdmf.cpp
create mode 100644 src/bamglib/write_xdmf.hpp
delete mode 100644 src/femlib/._BamgFreeFem.cpp
delete mode 100644 src/femlib/._CGNL.hpp
delete mode 100644 src/femlib/._QuadratureFormular.hpp
delete mode 100644 src/femlib/._R1.hpp
delete mode 100644 src/femlib/._R2.hpp
delete mode 100644 src/femlib/._R3.hpp
delete mode 100644 src/femlib/._gmres.hpp
delete mode 100644 src/fflib/._AFunction.hpp
delete mode 100644 src/fflib/._AFunction2.cpp
delete mode 100644 src/fflib/._lex.cpp
delete mode 100644 src/fflib/._lgsolver.hpp
delete mode 100644 src/fflib/._load.cpp
mode change 100755 => 100644 src/fflib/ffapi.cpp
delete mode 100644 src/medit/._keyboard.c
delete mode 100644 src/medit/._mouse.c
delete mode 100644 src/medit/._sproto.h
mode change 100755 => 100644 src/solver/hypre_FreeFem.cpp
copy test-driver-ff => test-driver (83%)
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