[python-escript] branch debian updated (7ae9849 -> ed1073c)
Joel Fenwick
jfenwick-guest at moszumanska.debian.org
Mon May 18 05:25:29 UTC 2015
This is an automated email from the git hooks/post-receive script.
jfenwick-guest pushed a change to branch debian
in repository python-escript.
from 7ae9849 Adding non-functional overrides
new 139ff2f These files should never have been committed
new fb3d43a Revert "These files should never have been committed"
new 85a8687 Bringing git into synch with r5614
new ed1073c Added debian buildflags to jessie. Fixed doco _static
The 4 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails. The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.
Summary of changes:
SConstruct | 26 +-
cusplibrary/SConscript | 2 +-
cusplibrary/cusp/array2d.h | 7 +
cusplibrary/cusp/cds_matrix.h | 25 +-
cusplibrary/cusp/complex.h | 7 +
cusplibrary/cusp/detail/cds_matrix.inl | 24 +-
cusplibrary/cusp/detail/copy.inl | 7 +
cusplibrary/cusp/detail/device/conversion.h | 7 +
cusplibrary/cusp/detail/device/convert.h | 7 +
cusplibrary/cusp/detail/device/multiply.h | 7 +
cusplibrary/cusp/detail/device/spmv/cds.h | 31 +-
.../cusp/detail/device/spmv/cds_symmetric.h | 31 +-
.../cusp/detail/device/transposed_multiply.h | 31 +-
.../cusp/detail/device/transposed_spmv/cds.h | 31 +-
.../cusp/detail/device/transposed_spmv/dia.h | 31 +-
cusplibrary/cusp/detail/dispatch/multiply.h | 9 +-
cusplibrary/cusp/detail/format_utils.inl | 9 +-
cusplibrary/cusp/detail/host/conversion.h | 7 +
cusplibrary/cusp/detail/host/convert.h | 7 +
cusplibrary/cusp/detail/host/multiply.h | 7 +
cusplibrary/cusp/detail/host/spmv.h | 7 +
cusplibrary/cusp/detail/host/transposed_multiply.h | 31 +-
cusplibrary/cusp/detail/host/transposed_spmv.h | 31 +-
cusplibrary/cusp/detail/multiply.inl | 7 +
cusplibrary/cusp/dia_matrix.h | 7 +
cusplibrary/cusp/format.h | 7 +
cusplibrary/cusp/gallery/random.h | 7 +
.../cusp/graph/detail/dispatch/hilbert_curve.h | 9 +-
cusplibrary/cusp/graph/detail/host/hilbert_curve.h | 7 +
cusplibrary/cusp/krylov/cgls.h | 31 +-
cusplibrary/cusp/krylov/detail/cgls.inl | 31 +-
cusplibrary/cusp/krylov/detail/lsqr.inl | 8 +
cusplibrary/cusp/krylov/lsqr.h | 7 +
cusplibrary/cusp/monitor.h | 7 +
cusplibrary/cusp/multiply.h | 7 +
cusplibrary/examples/Algorithms/transposed_spmv.cu | 31 +-
debian/changelog | 6 +
debian/changelog.trivial | 1 +
debian/control | 17 +-
debian/copyright | 230 +-
.../py_src/__init__.py => debian/patches/series | 0
debian/python-escript-doc.dirs | 1 +
debian/python-escript-doc.examples | 1 +
debian/python-escript-doc.install | 8 +
debian/python-escript-doc.links | 18 +
debian/python-escript-doc.lintian-overrides | 3 +
debian/python-escript-mpi.dirs | 4 +
debian/python-escript-mpi.install | 5 +
debian/python-escript-mpi.lintian-overrides | 6 +
debian/python-escript-mpi.manpages | 1 +
debian/python-escript-mpi.postinst | 4 +-
debian/python-escript-mpi.prerm | 2 +-
debian/python-escript.dirs | 4 +
debian/python-escript.install | 4 +
debian/python-escript.lintian-overrides | 7 +
debian/python-escript.manpages | 1 +
debian/python-escript.postinst | 4 +-
debian/python-escript.prerm | 2 +-
debian/python3-escript-mpi.dirs | 4 +
debian/python3-escript-mpi.install | 5 +
debian/python3-escript-mpi.lintian-overrides | 5 +
debian/python3-escript-mpi.manpages | 1 +
...3-mpi.postinst => python3-escript-mpi.postinst} | 4 +-
...script3-mpi.prerm => python3-escript-mpi.prerm} | 0
debian/python3-escript.dirs | 4 +
debian/python3-escript.install | 4 +
debian/python3-escript.lintian-overrides | 5 +
debian/python3-escript.manpages | 1 +
...-escript3.postinst => python3-escript.postinst} | 4 +-
...python-escript3.prerm => python3-escript.prerm} | 0
debian/rules | 279 +-
debian/source/format | 2 +-
debian/source/lintian-overrides | 7 -
debprep.notes | 36 -
doc/SConscript | 9 +-
doc/completedevs.tex | 5 +-
doc/cookbook/SConscript | 2 +-
doc/cookbook/cookbook.bib | 2 +-
doc/cookbook/cookbook.tex | 9 +-
doc/cookbook/cookbook_defs.tex | 2 +-
doc/cookbook/einsteinETA.tex | 2 +-
doc/cookbook/escpybas.tex | 2 +-
doc/cookbook/example01.tex | 4 +-
doc/cookbook/example02.tex | 2 +-
doc/cookbook/example03.tex | 2 +-
doc/cookbook/example04.tex | 2 +-
doc/cookbook/example05.tex | 2 +-
doc/cookbook/example07.tex | 2 +-
doc/cookbook/example08.tex | 2 +-
doc/cookbook/example09.tex | 2 +-
doc/cookbook/example10.tex | 2 +-
doc/cookbook/example11.tex | 2 +-
doc/cookbook/intro.tex | 7 +-
doc/cookbook/quickstart.tex | 2 +-
doc/cookbook/verinfo.tex | 7 +
doc/copyrights.tex | 4 +-
doc/currentdev.tex | 5 +-
doc/docguide.tex | 2 +-
doc/doxygen/SConscript | 2 +-
doc/elist.tex | 2 +-
doc/epydoc/SConscript | 2 +-
doc/examples/SConscript | 4 +-
doc/examples/cookbook/cblib.py | 6 +-
doc/examples/cookbook/cblib1.py | 4 +-
doc/examples/cookbook/example01a.py | 4 +-
doc/examples/cookbook/example01b.py | 4 +-
doc/examples/cookbook/example01c.py | 4 +-
doc/examples/cookbook/example02.py | 4 +-
doc/examples/cookbook/example03a.py | 4 +-
doc/examples/cookbook/example03b.py | 4 +-
doc/examples/cookbook/example04a.py | 4 +-
doc/examples/cookbook/example04b.py | 12 +-
doc/examples/cookbook/example05a.py | 12 +-
doc/examples/cookbook/example05b.py | 4 +-
doc/examples/cookbook/example05c.py | 4 +-
doc/examples/cookbook/example06.py | 4 +-
doc/examples/cookbook/example07a.py | 4 +-
doc/examples/cookbook/example07b.py | 4 +-
doc/examples/cookbook/example08a.py | 4 +-
doc/examples/cookbook/example08b.py | 4 +-
doc/examples/cookbook/example08c.py | 4 +-
doc/examples/cookbook/example09a.py | 4 +-
doc/examples/cookbook/example09b.py | 4 +-
doc/examples/cookbook/example09c.py | 4 +-
doc/examples/cookbook/example09m.py | 4 +-
doc/examples/cookbook/example09n.py | 4 +-
doc/examples/cookbook/example10a.py | 4 +-
doc/examples/cookbook/example10b.py | 4 +-
doc/examples/cookbook/example10c_0.py | 4 +-
doc/examples/cookbook/example10c_1.py | 4 +-
doc/examples/cookbook/example10d.py | 4 +-
doc/examples/cookbook/example10e.py | 4 +-
doc/examples/cookbook/example10m.py | 4 +-
doc/examples/cookbook/example10p.py | 4 +-
doc/examples/cookbook/example11a.py | 4 +-
doc/examples/cookbook/example11b.py | 4 +-
doc/examples/cookbook/example11c.py | 4 +-
doc/examples/cookbook/example11m.py | 4 +-
doc/examples/cookbook/wave_stab.py | 4 +-
doc/examples/cookbook/wavesolver2d001.py | 4 +-
doc/examples/cookbook/wavesolver2d002.py | 4 +-
doc/examples/cookbook/wavesolver2d003.py | 4 +-
doc/examples/cookbook/wavesolver2d004.py | 4 +-
doc/examples/geotutorial/backward_euler.py | 4 +-
doc/examples/geotutorial/forward_euler.py | 4 +-
doc/examples/geotutorial/myfirstscript.py | 4 +-
doc/examples/geotutorial/steadystate.py | 4 +-
doc/examples/geotutorial/steadystate_variablek.py | 4 +-
doc/examples/inversion/create_netcdf.py | 2 +-
doc/examples/inversion/dc_forward.py | 10 +-
doc/examples/inversion/grav_ermapper.py | 4 +-
doc/examples/inversion/grav_netcdf.py | 4 +-
doc/examples/inversion/gravmag_netcdf.py | 4 +-
doc/examples/inversion/gravmag_nodriver.py | 4 +-
doc/examples/inversion/gravmag_wgs84_nodriver.py | 4 +-
doc/examples/inversion/mag_netcdf.py | 4 +-
doc/examples/inversion/mag_wgs84_netcdf.py | 4 +-
doc/examples/inversion/plot_ermapper.py | 2 +-
doc/examples/inversion/plot_netcdf.py | 2 +-
doc/examples/inversion/strong_gravmag_netcdf.py | 4 +-
doc/examples/inversion/synthetic_HTI.py | 4 +-
doc/examples/inversion/synthetic_TTI.py | 4 +-
doc/examples/inversion/synthetic_VTI.py | 4 +-
doc/examples/inversion/synthetic_sonic.py | 4 +-
doc/examples/inversion/synthetic_sonicHTI.py | 4 +-
doc/examples/usersguide/brick.py | 4 +-
doc/examples/usersguide/brick_stl.py | 4 +-
doc/examples/usersguide/darcy.py | 4 +-
doc/examples/usersguide/diffusion.py | 4 +-
doc/examples/usersguide/fluid.py | 2 +-
doc/examples/usersguide/heatedblock.py | 4 +-
doc/examples/usersguide/helmholtz.py | 4 +-
doc/examples/usersguide/int_save.py | 4 +-
doc/examples/usersguide/lid_driven_cavity.py | 4 +-
doc/examples/usersguide/mount.py | 4 +-
doc/examples/usersguide/poisson.py | 4 +-
doc/examples/usersguide/poisson_matplotlib.py | 4 +-
doc/examples/usersguide/poisson_vtk.py | 4 +-
doc/examples/usersguide/quad.py | 4 +-
doc/examples/usersguide/refine.py | 4 +-
doc/examples/usersguide/slip.py | 4 +-
doc/examples/usersguide/trapezoid.py | 4 +-
doc/examples/usersguide/wave.py | 4 +-
doc/install/SConscript | 2 +-
doc/install/allsrccommon.tex | 2 +-
doc/install/binary.tex | 80 -
doc/install/bincommon.tex | 31 -
doc/install/binlinux.tex | 2 +-
doc/install/binmac.tex | 2 +-
doc/install/binwin.tex | 49 -
doc/install/chcomp.tex | 2 +-
doc/install/compiler.tex | 2 +-
doc/install/debbin.tex | 26 +-
doc/install/install.tex | 8 +-
doc/install/install_defs.tex | 5 +-
doc/install/intro.tex | 4 +-
doc/install/source.tex | 25 +-
doc/install/srcadditional.tex | 2 +-
doc/install/srclinux.tex | 2 +-
doc/install/srcmac.tex | 2 +-
doc/install/srcommon.tex | 265 -
doc/install/verinfo.tex | 7 +
doc/install/winstall.tex | 48 -
doc/inversion/CookDcRes.tex | 2 +-
doc/inversion/Forward2DMTTEMode.tex | 2 +-
doc/inversion/ForwardDCRES.tex | 2 +-
doc/inversion/ForwardGravity.tex | 2 +-
doc/inversion/ForwardMagnetic.tex | 2 +-
doc/inversion/ForwardSelfMagnetic.tex | 2 +-
doc/inversion/Minimization.tex | 2 +-
doc/inversion/SConscript | 2 +-
doc/inversion/defs.tex | 2 +-
doc/inversion/intro.tex | 2 +-
doc/inversion/inversion.tex | 8 +-
doc/inversion/verinfo.tex | 7 +
doc/sphinx_api/SConscript | 2 +-
doc/sphinx_api/genrst.py | 8 +-
doc/user/Models.tex | 2 +-
doc/user/SConscript | 2 +-
doc/user/TutorialPDE.tex | 2 +-
doc/user/appendix.tex | 2 +-
doc/user/changes.tex | 2 +-
doc/user/darcyflux.tex | 2 +-
doc/user/diffusion.tex | 2 +-
doc/user/escript.tex | 2 +-
doc/user/execute.tex | 2 +-
doc/user/faultsystem.tex | 2 +-
doc/user/finley.tex | 2 +-
doc/user/finleyelements.tex | 2 +-
doc/user/firststep.tex | 2 +-
doc/user/heatedblock.tex | 2 +-
doc/user/levelset.tex | 2 +-
doc/user/levelsetmodel.tex | 2 +-
doc/user/linearPDE.tex | 2 +-
doc/user/lumping.tex | 2 +-
doc/user/modelframe.tex | 2 +-
doc/user/nonlinearPDE.tex | 2 +-
doc/user/notation.tex | 2 +-
doc/user/ourrefs.tex | 2 +-
doc/user/py3.tex | 2 +-
doc/user/pycad.tex | 2 +-
doc/user/ripley.tex | 2 +-
doc/user/slip.tex | 2 +-
doc/user/speckley.tex | 2 +-
doc/user/stokesflow.tex | 2 +-
doc/user/stokessolver.tex | 2 +-
doc/user/symbolic.tex | 2 +-
doc/user/user.tex | 7 +-
doc/user/user_defs.tex | 2 +-
doc/user/verinfo.tex | 7 +
doc/user/wave.tex | 2 +-
doc/user/weipa.tex | 2 +-
doc/verinfo.tex | 7 +
downunder/py_src/SConscript | 7 +-
downunder/py_src/__init__.py | 6 +-
downunder/py_src/coordinates.py | 4 +-
downunder/py_src/costfunctions.py | 4 +-
downunder/py_src/datasources.py | 4 +-
downunder/py_src/dcresistivityforwardmodeling.py | 157 +-
downunder/py_src/domainbuilder.py | 4 +-
downunder/py_src/domaingeneratordcresistivity.py | 147 +-
downunder/py_src/forwardmodels.py | 1571 ----
.../py_src/forwardmodels}/__init__.py | 19 +-
downunder/py_src/forwardmodels/acoustic.py | 319 +
downunder/py_src/forwardmodels/base.py | 206 +
downunder/py_src/forwardmodels/dcresistivity.py | 260 +
downunder/py_src/forwardmodels/gravity.py | 151 +
downunder/py_src/forwardmodels/magnetic.py | 302 +
.../py_src/forwardmodels/magnetotelluric2d.py | 554 ++
downunder/py_src/forwardmodels/pressure.py | 102 +
downunder/py_src/forwardmodels/subsidence.py | 135 +
downunder/py_src/inversioncostfunctions.py | 13 +-
downunder/py_src/inversions.py | 4 +-
downunder/py_src/mappings.py | 39 +-
downunder/py_src/minimizers.py | 4 +-
downunder/py_src/regularizations.py | 6 +-
downunder/py_src/seismic.py | 67 +-
...functions.py => splitinversioncostfunctions.py} | 393 +-
downunder/py_src/splitminimizers.py | 231 +
...{regularizations.py => splitregularizations.py} | 29 +-
downunder/test/python/SConscript | 2 +-
downunder/test/python/inversion_acoustictest_2d.py | 4 +-
downunder/test/python/run_coordinates.py | 4 +-
downunder/test/python/run_datasources.py | 14 +-
downunder/test/python/run_dcforward.py | 172 +-
downunder/test/python/run_domainbuilder.py | 4 +-
downunder/test/python/run_forward.py | 586 +-
downunder/test/python/run_gravity.py | 4 +-
downunder/test/python/run_inversion_gravmag_2d.py | 4 +-
downunder/test/python/run_inversioncostfunction.py | 4 +-
downunder/test/python/run_magnetic.py | 4 +-
downunder/test/python/run_mappings.py | 4 +-
downunder/test/python/run_minimizers.py | 4 +-
downunder/test/python/run_regularization.py | 4 +-
downunder/test/python/run_seismic.py | 4 +-
dudley/benchmarks/dudleybench.py | 4 +-
dudley/benchmarks/runbenchmark.py | 4 +-
dudley/py_src/SConscript | 2 +-
dudley/py_src/__init__.py | 4 +-
dudley/py_src/factorywrappers.py | 8 +-
dudley/py_src/readers.py | 4 +-
dudley/src/Assemble.h | 76 +-
dudley/src/Assemble_AverageElementData.cpp | 7 +-
dudley/src/Assemble_CopyElementData.cpp | 7 +-
dudley/src/Assemble_CopyNodalData.cpp | 24 +-
dudley/src/Assemble_LumpedSystem.cpp | 21 +-
dudley/src/Assemble_NodeCoordinates.cpp | 7 +-
dudley/src/Assemble_PDE.cpp | 11 +-
dudley/src/Assemble_PDE_Points.cpp | 8 +-
dudley/src/Assemble_PDE_Single2_1D.cpp | 2 +-
dudley/src/Assemble_PDE_Single2_2D.cpp | 11 +-
dudley/src/Assemble_PDE_Single2_3D.cpp | 11 +-
dudley/src/Assemble_PDE_System2_1D.cpp | 2 +-
dudley/src/Assemble_PDE_System2_2D.cpp | 11 +-
dudley/src/Assemble_PDE_System2_3D.cpp | 11 +-
dudley/src/Assemble_addToSystemMatrix.cpp | 5 +-
dudley/src/Assemble_getAssembleParameters.cpp | 7 +-
dudley/src/Assemble_getSize.cpp | 7 +-
dudley/src/Assemble_gradient.cpp | 8 +-
dudley/src/Assemble_integrate.cpp | 7 +-
dudley/src/Assemble_interpolate.cpp | 9 +-
dudley/src/Assemble_jacobeans.cpp | 5 +-
dudley/src/Assemble_setNormal.cpp | 7 +-
dudley/src/CPPAdapter/DudleyAdapterException.cpp | 2 +-
dudley/src/CPPAdapter/DudleyAdapterException.h | 2 +-
dudley/src/CPPAdapter/DudleyError.cpp | 2 +-
dudley/src/CPPAdapter/DudleyError.h | 2 +-
dudley/src/CPPAdapter/MeshAdapter.cpp | 220 +-
dudley/src/CPPAdapter/MeshAdapter.h | 8 +-
dudley/src/CPPAdapter/MeshAdapterFactory.cpp | 6 +-
dudley/src/CPPAdapter/MeshAdapterFactory.h | 2 +-
dudley/src/CPPAdapter/dudleycpp.cpp | 5 +-
dudley/src/CPPAdapter/system_dep.h | 17 +-
dudley/src/Dudley.cpp | 2 +-
dudley/src/Dudley.h | 2 +-
dudley/src/DudleyVersion.h | 4 +-
dudley/src/ElementFile.cpp | 5 +-
dudley/src/ElementFile.h | 4 +-
dudley/src/ElementFile_allocTable.cpp | 5 +-
dudley/src/ElementFile_copyTable.cpp | 4 +-
dudley/src/ElementFile_createColoring.cpp | 5 +-
dudley/src/ElementFile_distributeByRankOfDOF.cpp | 6 +-
dudley/src/ElementFile_gather.cpp | 5 +-
dudley/src/ElementFile_jacobeans.cpp | 5 +-
dudley/src/ElementFile_markNodes.cpp | 5 +-
dudley/src/ElementFile_optimizeOrdering.cpp | 5 +-
dudley/src/ElementFile_relableNodes.cpp | 5 +-
dudley/src/ElementFile_scatter.cpp | 5 +-
dudley/src/ElementFile_setCoordinates.cpp | 10 +-
dudley/src/ElementFile_setNodeRange.cpp | 5 +-
dudley/src/ElementFile_setTags.cpp | 7 +-
dudley/src/ElementType.cpp | 2 +-
dudley/src/ElementType.h | 2 +-
dudley/src/IndexList.cpp | 5 +-
dudley/src/IndexList.h | 2 +-
dudley/src/Mesh.cpp | 5 +-
dudley/src/Mesh.h | 4 +-
dudley/src/Mesh_createNodeFileMappings.cpp | 5 +-
dudley/src/Mesh_distributeByRankOfDOF.cpp | 5 +-
dudley/src/Mesh_findMatchingFaces.cpp | 5 +-
dudley/src/Mesh_getPattern.cpp | 5 +-
dudley/src/Mesh_markNodes.cpp | 5 +-
dudley/src/Mesh_optimizeDOFDistribution.cpp | 382 +-
dudley/src/Mesh_optimizeDOFLabeling.cpp | 5 +-
dudley/src/Mesh_prepare.cpp | 5 +-
dudley/src/Mesh_print.cpp | 5 +-
dudley/src/Mesh_read.cpp | 5 +-
dudley/src/Mesh_readGmsh.cpp | 5 +-
dudley/src/Mesh_relableElementNodes.cpp | 5 +-
dudley/src/Mesh_resolveNodeIds.cpp | 5 +-
dudley/src/Mesh_setCoordinates.cpp | 10 +-
dudley/src/Mesh_tagmaps.cpp | 5 +-
dudley/src/Mesh_tet4.cpp | 5 +-
dudley/src/Mesh_tri3.cpp | 5 +-
dudley/src/Mesh_write.cpp | 5 +-
dudley/src/NodeFile.cpp | 5 +-
dudley/src/NodeFile.h | 6 +-
dudley/src/NodeFile_allocTable.cpp | 5 +-
dudley/src/NodeFile_copyTable.cpp | 5 +-
dudley/src/NodeFile_createDenseLabelings.cpp | 5 +-
dudley/src/NodeFile_gather.cpp | 5 +-
dudley/src/NodeFile_scatter.cpp | 5 +-
dudley/src/NodeFile_setCoordinates.cpp | 7 +-
dudley/src/NodeFile_setIdRange.cpp | 5 +-
dudley/src/NodeFile_setTags.cpp | 7 +-
dudley/src/NodeMapping.cpp | 2 +-
dudley/src/NodeMapping.h | 2 +-
dudley/src/SConscript | 2 +-
dudley/src/ShapeTable.cpp | 2 +-
dudley/src/ShapeTable.h | 2 +-
dudley/src/TagMap.cpp | 2 +-
dudley/src/TagMap.h | 2 +-
dudley/src/TriangularMesh.h | 2 +-
dudley/src/Util.cpp | 2 +-
dudley/src/Util.h | 2 +-
dudley/src/generateReferenceElementList.py | 2 +-
dudley/test/MeshAdapterTestCase.cpp | 5 +-
dudley/test/MeshAdapterTestCase.h | 2 +-
dudley/test/SConscript | 2 +-
dudley/test/dudley_UnitTests.cpp | 2 +-
dudley/test/python/FCT_benchmark.py | 4 +-
dudley/test/python/FCT_test1.py | 4 +-
dudley/test/python/FCT_test2.py | 4 +-
dudley/test/python/OutTest.py | 4 +-
dudley/test/python/PoissonSolverTest.py | 4 +-
dudley/test/python/RecTest.py | 4 +-
dudley/test/python/SConscript | 4 +-
dudley/test/python/axisymm-splitB.py | 4 +-
dudley/test/python/blocktest.py | 4 +-
dudley/test/python/brick.py | 4 +-
dudley/test/python/convection.py | 4 +-
dudley/test/python/fixme_run_generators.py | 4 +-
dudley/test/python/generate_dumps.py | 4 +-
dudley/test/python/generate_meshes.py | 4 +-
dudley/test/python/linearElastic.py | 4 +-
dudley/test/python/rayleigh_taylor_instabilty.py | 4 +-
dudley/test/python/rectangle.py | 4 +-
dudley/test/python/run_escriptOnDudley.py | 5 +-
dudley/test/python/run_inputOutput.py | 4 +-
dudley/test/python/run_linearPDEsOnDudley1.py | 4 +-
dudley/test/python/run_linearPDEsOnDudley2.py | 4 +-
dudley/test/python/run_models.py | 4 +-
dudley/test/python/run_nlpde2dOnDudley.py | 4 +-
dudley/test/python/run_nlpde3dOnDudley.py | 4 +-
dudley/test/python/run_simplesolve.py | 4 +-
dudley/test/python/run_utilOnDudley.py | 11 +-
dudley/test/python/seismic_wave.py | 4 +-
dudley/test/python/slip_stress_mesh_old.py | 4 +-
dudley/test/python/slip_stress_old.py | 4 +-
dudley/test/python/stokes_problems.py | 4 +-
dudley/test/python/subduction1.py | 4 +-
dudley/test/python/subduction1_gen.py | 4 +-
dudley/test/python/time_chunks.py | 4 +-
dudley/test/python/tp.py | 4 +-
escript/py_src/SConscript | 2 +-
escript/py_src/__init__.py | 5 +-
escriptcore/py_src/SConscript | 2 +-
escriptcore/py_src/__init__.py | 4 +-
escriptcore/py_src/benchmark.py | 4 +-
escriptcore/py_src/datamanager.py | 4 +-
escriptcore/py_src/domainCouplers.py | 6 +-
escriptcore/py_src/faultsystems.py | 4 +-
escriptcore/py_src/flows.py | 4 +-
escriptcore/py_src/gmshrunner.py | 20 +-
escriptcore/py_src/heat.py | 4 +-
escriptcore/py_src/levelset.py | 4 +-
escriptcore/py_src/linearPDEs.py | 7 +-
escriptcore/py_src/modelframe.py | 4 +-
escriptcore/py_src/models.py | 4 +-
escriptcore/py_src/mountains.py | 4 +-
escriptcore/py_src/nonlinearPDE.py | 4 +-
escriptcore/py_src/pdetools.py | 4 +-
escriptcore/py_src/rheologies.py | 4 +-
escriptcore/py_src/runmodel.py | 4 +-
escriptcore/py_src/splitworld.py | 41 +-
escriptcore/py_src/start.py | 4 +-
escriptcore/py_src/symbolic/__init__.py | 4 +-
escriptcore/py_src/symbolic/evaluator.py | 6 +-
escriptcore/py_src/symbolic/functions.py | 4 +-
escriptcore/py_src/symbolic/pretty.py | 4 +-
escriptcore/py_src/symbolic/symbol.py | 4 +-
escriptcore/py_src/symbolic/utils.py | 4 +-
escriptcore/py_src/testing.py | 29 +-
escriptcore/py_src/unitsSI.py | 4 +-
escriptcore/py_src/utestselect.py | 4 +-
escriptcore/py_src/util.py | 4 +-
escriptcore/src/AbstractContinuousDomain.cpp | 5 +-
escriptcore/src/AbstractContinuousDomain.h | 2 +-
escriptcore/src/AbstractDomain.cpp | 6 +-
escriptcore/src/AbstractDomain.h | 12 +-
...SplitWorldException.cpp => AbstractReducer.cpp} | 32 +-
escriptcore/src/{Reducer.h => AbstractReducer.h} | 79 +-
escriptcore/src/AbstractSystemMatrix.cpp | 5 +-
escriptcore/src/AbstractSystemMatrix.h | 2 +-
escriptcore/src/AbstractTransportProblem.cpp | 5 +-
escriptcore/src/AbstractTransportProblem.h | 2 +-
escriptcore/src/BinaryOp.h | 2 +-
escriptcore/src/Data.cpp | 24 +-
escriptcore/src/Data.h | 24 +-
escriptcore/src/DataAbstract.cpp | 5 +-
escriptcore/src/DataAbstract.h | 2 +-
escriptcore/src/DataAlgorithm.h | 2 +-
escriptcore/src/DataBlocks2D.cpp | 2 +-
escriptcore/src/DataBlocks2D.h | 2 +-
escriptcore/src/DataC.cpp | 118 +-
escriptcore/src/DataC.h | 54 +-
escriptcore/src/DataConstant.cpp | 4 +-
escriptcore/src/DataConstant.h | 2 +-
escriptcore/src/DataEmpty.cpp | 4 +-
escriptcore/src/DataEmpty.h | 2 +-
escriptcore/src/DataException.cpp | 2 +-
escriptcore/src/DataException.h | 2 +-
escriptcore/src/DataExpanded.cpp | 4 +-
escriptcore/src/DataExpanded.h | 2 +-
escriptcore/src/DataFactory.cpp | 5 +-
escriptcore/src/DataFactory.h | 13 +-
escriptcore/src/DataLazy.cpp | 4 +-
escriptcore/src/DataLazy.h | 2 +-
escriptcore/src/DataMaths.cpp | 4 +-
escriptcore/src/DataMaths.h | 2 +-
escriptcore/src/DataReady.cpp | 6 +-
escriptcore/src/DataReady.h | 2 +-
escriptcore/src/DataTagged.cpp | 5 +-
escriptcore/src/DataTagged.h | 2 +-
escriptcore/src/DataTypes.cpp | 5 +-
escriptcore/src/DataTypes.h | 2 +-
escriptcore/src/DataVector.cpp | 5 +-
escriptcore/src/DataVector.h | 2 +-
escriptcore/src/Dodgy.cpp | 2 +-
escriptcore/src/Dodgy.h | 2 +-
escriptcore/src/DomainException.cpp | 2 +-
escriptcore/src/DomainException.h | 2 +-
escriptcore/src/EscriptParams.cpp | 6 +-
escriptcore/src/EscriptParams.h | 2 +-
escriptcore/src/FunctionSpace.cpp | 5 +-
escriptcore/src/FunctionSpace.h | 2 +-
escriptcore/src/FunctionSpaceException.cpp | 2 +-
escriptcore/src/FunctionSpaceException.h | 2 +-
escriptcore/src/FunctionSpaceFactory.cpp | 5 +-
escriptcore/src/FunctionSpaceFactory.h | 2 +-
escriptcore/src/LapackInverseHelper.cpp | 2 +-
escriptcore/src/LapackInverseHelper.h | 2 +-
escriptcore/src/LocalOps.h | 8 +-
.../src/{Reducer.cpp => MPIDataReducer.cpp} | 50 +-
escriptcore/src/MPIDataReducer.h | 77 +
escriptcore/src/MPIScalarReducer.cpp | 271 +
escriptcore/src/MPIScalarReducer.h | 80 +
escriptcore/src/NonReducedVariable.cpp | 121 +
escriptcore/src/NonReducedVariable.h | 80 +
escriptcore/src/NullDomain.cpp | 9 +-
escriptcore/src/NullDomain.h | 2 +-
escriptcore/src/Pointers.h | 2 +-
escriptcore/src/SConscript | 12 +-
escriptcore/src/SolverOptions.cpp | 2 +-
escriptcore/src/SolverOptions.h | 13 +-
escriptcore/src/SolverOptionsException.cpp | 2 +-
escriptcore/src/SolverOptionsException.h | 2 +-
escriptcore/src/SplitWorld.cpp | 363 +-
escriptcore/src/SplitWorld.h | 29 +-
escriptcore/src/SplitWorldException.cpp | 2 +-
escriptcore/src/SplitWorldException.h | 2 +-
escriptcore/src/SubWorld.cpp | 837 +-
escriptcore/src/SubWorld.h | 97 +-
escriptcore/src/SystemMatrixException.cpp | 2 +-
escriptcore/src/SystemMatrixException.h | 2 +-
escriptcore/src/Taipan.cpp | 2 +-
escriptcore/src/Taipan.h | 2 +-
escriptcore/src/TestDomain.cpp | 5 +-
escriptcore/src/TestDomain.h | 2 +-
escriptcore/src/TransportProblemException.cpp | 2 +-
escriptcore/src/TransportProblemException.h | 2 +-
escriptcore/src/UnaryFuncs.h | 2 +-
escriptcore/src/UnaryOp.h | 2 +-
escriptcore/src/UtilC.h | 2 +-
escriptcore/src/Utils.cpp | 197 +-
escriptcore/src/Utils.h | 2 +-
escriptcore/src/WrappedArray.cpp | 2 +-
escriptcore/src/WrappedArray.h | 2 +-
escriptcore/src/escriptcpp.cpp | 32 +-
escriptcore/src/system_dep.h | 21 +-
escriptcore/test/DataAlgorithmAdapterTestCase.cpp | 10 +-
escriptcore/test/DataAlgorithmAdapterTestCase.h | 2 +-
escriptcore/test/DataBlocks2DTestCase.cpp | 5 +-
escriptcore/test/DataBlocks2DTestCase.h | 2 +-
escriptcore/test/DataConstantTestCase.cpp | 5 +-
escriptcore/test/DataConstantTestCase.h | 2 +-
escriptcore/test/DataEmptyTestCase.cpp | 6 +-
escriptcore/test/DataEmptyTestCase.h | 2 +-
escriptcore/test/DataExpandedTestCase.cpp | 14 +-
escriptcore/test/DataExpandedTestCase.h | 2 +-
escriptcore/test/DataFactoryTestCase.cpp | 15 +-
escriptcore/test/DataFactoryTestCase.h | 2 +-
escriptcore/test/DataLazyTestCase.cpp | 5 +-
escriptcore/test/DataLazyTestCase.h | 2 +-
escriptcore/test/DataMathsTestCase.cpp | 5 +-
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escriptcore/test/DataTaggedTestCase.cpp | 5 +-
escriptcore/test/DataTaggedTestCase.h | 2 +-
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escriptcore/test/DataTestCase.h | 2 +-
escriptcore/test/DataTypesTestCase.cpp | 5 +-
escriptcore/test/DataTypesTestCase.h | 2 +-
escriptcore/test/DataVectorTestCase.cpp | 5 +-
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escriptcore/test/FunctionSpaceTestCase.cpp | 6 +-
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escriptcore/test/SConscript | 2 +-
escriptcore/test/SharedDataTestCase.cpp | 6 +-
escriptcore/test/SharedDataTestCase.h | 2 +-
escriptcore/test/TaipanTestCase.cpp | 5 +-
escriptcore/test/TaipanTestCase.h | 2 +-
escriptcore/test/escript_UnitTest.cpp | 2 +-
escriptcore/test/multi_arrayTestCase.cpp | 5 +-
escriptcore/test/multi_arrayTestCase.h | 2 +-
escriptcore/test/python/SConscript | 6 +-
escriptcore/test/python/TimingTests.py.old | 4 +-
escriptcore/test/python/run_data_access.py | 4 +-
escriptcore/test/python/run_symbolic.py | 4 +-
escriptcore/test/python/run_testdomain.py | 4 +-
escriptcore/test/python/run_units.py | 4 +-
escriptcore/test/python/run_xml.py | 4 +-
escriptcore/test/python/test_assemblage.py | 4 +-
escriptcore/test/python/test_assemblage_2Do1.py | 4 +-
escriptcore/test/python/test_assemblage_2Do2.py | 4 +-
escriptcore/test/python/test_assemblage_3Do1.py | 4 +-
escriptcore/test/python/test_assemblage_3Do2.py | 4 +-
escriptcore/test/python/test_condEval.py | 4 +-
escriptcore/test/python/test_linearPDEs.py | 4 +-
escriptcore/test/python/test_modulefns.py | 4 +-
escriptcore/test/python/test_nonLinearPDE.py | 4 +-
escriptcore/test/python/test_objects.py | 10 +-
escriptcore/test/python/test_pdetools.py | 4 +-
escriptcore/test/python/test_shared.py | 4 +-
escriptcore/test/python/test_splitworld.py | 478 +
escriptcore/test/python/test_symfuncs.py | 4 +-
escriptcore/test/python/test_util.py | 4 +-
escriptcore/test/python/test_util_base.py | 15 +-
.../test/python/test_util_binary_no_tagged_data.py | 4 +-
.../python/test_util_binary_with_tagged_data.py | 4 +-
.../test_util_overloaded_binary_no_tagged_data.py | 4 +-
...test_util_overloaded_binary_with_tagged_data.py | 4 +-
.../python/test_util_reduction_no_tagged_data.py | 4 +-
.../python/test_util_reduction_with_tagged_data.py | 4 +-
.../python/test_util_slicing_no_tagged_data.py | 4 +-
.../python/test_util_slicing_with_tagged_data.py | 4 +-
.../test/python/test_util_spatial_functions1.py | 4 +-
.../test/python/test_util_spatial_functions2.py | 4 +-
.../test/python/test_util_spatial_functions3.py | 4 +-
.../test/python/test_util_unary_no_tagged_data.py | 4 +-
.../python/test_util_unary_with_tagged_data.py | 4 +-
esysUtils/src/EsysAssert.h | 2 +-
esysUtils/src/EsysAssertException.cpp | 2 +-
esysUtils/src/EsysAssertException.h | 2 +-
esysUtils/src/EsysException.cpp | 2 +-
esysUtils/src/EsysException.h | 2 +-
esysUtils/src/EsysRandom.cpp | 2 +-
esysUtils/src/EsysRandom.h | 2 +-
esysUtils/src/Esys_MPI.cpp | 155 +-
esysUtils/src/Esys_MPI.h | 12 +-
esysUtils/src/IndexList.h | 2 +-
esysUtils/src/SConscript | 5 +-
esysUtils/src/blocktimer.cpp | 2 +-
esysUtils/src/blocktimer.h | 2 +-
esysUtils/src/error.cpp | 2 +-
esysUtils/src/error.h | 2 +-
esysUtils/src/esysExceptionTranslator.cpp | 5 +-
esysUtils/src/esysExceptionTranslator.h | 2 +-
esysUtils/src/esysFileWriter.h | 2 +-
escriptcore/src/UtilC.h => esysUtils/src/first.h | 13 +-
esysUtils/src/index.h | 2 +-
esysUtils/src/maths.h | 32 +-
esysUtils/src/mem.h | 2 +-
esysUtils/src/pyerr.cpp | 45 +
escriptcore/src/UtilC.h => esysUtils/src/pyerr.h | 17 +-
esysUtils/src/system_dep.h | 22 +-
esysUtils/src/types.h | 2 +-
esysUtils/test/EsysExceptionTestCase.cpp | 2 +-
esysUtils/test/EsysExceptionTestCase.h | 2 +-
esysUtils/test/EsysFileWriterTestCase.cpp | 2 +-
esysUtils/test/EsysFileWriterTestCase.h | 2 +-
esysUtils/test/SConscript | 2 +-
esysUtils/test/esysUtils_UnitTest.cpp | 2 +-
finley/benchmarks/finleybench.py | 4 +-
finley/benchmarks/runbenchmark.py | 4 +-
finley/py_src/SConscript | 2 +-
finley/py_src/__init__.py | 4 +-
finley/py_src/factorywrappers.py | 12 +-
finley/py_src/readers.py | 4 +-
finley/src/Assemble.h | 2 +-
finley/src/Assemble_AverageElementData.cpp | 6 +-
finley/src/Assemble_CopyElementData.cpp | 6 +-
finley/src/Assemble_CopyNodalData.cpp | 6 +-
finley/src/Assemble_LumpedSystem.cpp | 6 +-
finley/src/Assemble_NodeCoordinates.cpp | 6 +-
finley/src/Assemble_PDE.cpp | 6 +-
finley/src/Assemble_PDE_Points.cpp | 5 +-
finley/src/Assemble_PDE_Single_1D.cpp | 5 +-
finley/src/Assemble_PDE_Single_2D.cpp | 14 +-
finley/src/Assemble_PDE_Single_3D.cpp | 14 +-
finley/src/Assemble_PDE_Single_C.cpp | 7 +-
finley/src/Assemble_PDE_System_1D.cpp | 6 +-
finley/src/Assemble_PDE_System_2D.cpp | 14 +-
finley/src/Assemble_PDE_System_3D.cpp | 14 +-
finley/src/Assemble_PDE_System_C.cpp | 8 +-
finley/src/Assemble_addToSystemMatrix.cpp | 6 +-
finley/src/Assemble_getAssembleParameters.cpp | 5 +-
finley/src/Assemble_getNormal.cpp | 5 +-
finley/src/Assemble_getSize.cpp | 4 +-
finley/src/Assemble_gradient.cpp | 5 +-
finley/src/Assemble_integrate.cpp | 6 +-
finley/src/Assemble_interpolate.cpp | 6 +-
finley/src/Assemble_jacobians.cpp | 6 +-
finley/src/CPPAdapter/FinleyAdapterException.cpp | 2 +-
finley/src/CPPAdapter/FinleyAdapterException.h | 2 +-
finley/src/CPPAdapter/MeshAdapter.cpp | 11 +-
finley/src/CPPAdapter/MeshAdapter.h | 8 +-
finley/src/CPPAdapter/MeshAdapterFactory.cpp | 8 +-
finley/src/CPPAdapter/MeshAdapterFactory.h | 2 +-
finley/src/CPPAdapter/finleycpp.cpp | 26 +-
finley/src/CPPAdapter/system_dep.h | 17 +-
finley/src/ElementFile.cpp | 5 +-
finley/src/ElementFile.h | 2 +-
finley/src/ElementFile_jacobians.cpp | 6 +-
finley/src/Finley.cpp | 2 +-
finley/src/Finley.h | 2 +-
finley/src/FinleyVersion.h | 4 +-
finley/src/IndexList.cpp | 6 +-
finley/src/IndexList.h | 2 +-
finley/src/Mesh.cpp | 6 +-
finley/src/Mesh.h | 8 +-
finley/src/Mesh_addPoints.cpp | 6 +-
finley/src/Mesh_findMatchingFaces.cpp | 5 +-
finley/src/Mesh_getPattern.cpp | 6 +-
finley/src/Mesh_glueFaces.cpp | 5 +-
finley/src/Mesh_hex20.cpp | 6 +-
finley/src/Mesh_hex8.cpp | 6 +-
finley/src/Mesh_joinFaces.cpp | 6 +-
finley/src/Mesh_merge.cpp | 6 +-
finley/src/Mesh_optimizeDOFDistribution.cpp | 22 +-
finley/src/Mesh_read.cpp | 5 +-
finley/src/Mesh_readGmsh.cpp | 1232 ++-
finley/src/Mesh_rec4.cpp | 5 +-
finley/src/Mesh_rec8.cpp | 5 +-
finley/src/Mesh_write.cpp | 5 +-
finley/src/NodeFile.cpp | 5 +-
finley/src/NodeFile.h | 2 +-
finley/src/NodeMapping.h | 2 +-
finley/src/Quadrature.cpp | 2 +-
finley/src/Quadrature.h | 2 +-
finley/src/RectangularMesh.h | 2 +-
finley/src/ReferenceElementSets.h | 2 +-
finley/src/ReferenceElements.cpp | 2 +-
finley/src/ReferenceElements.h | 2 +-
finley/src/SConscript | 2 +-
finley/src/ShapeFunctions.cpp | 2 +-
finley/src/ShapeFunctions.h | 2 +-
finley/src/Util.cpp | 5 +-
finley/src/Util.h | 2 +-
finley/src/generateReferenceElementList.py | 2 +-
finley/test/MeshAdapterTestCase.cpp | 5 +-
finley/test/MeshAdapterTestCase.h | 2 +-
finley/test/SConscript | 2 +-
finley/test/finley_UnitTests.cpp | 2 +-
finley/test/python/FCT_benchmark.py | 4 +-
finley/test/python/FCT_test0.py | 4 +-
finley/test/python/FCT_test1.py | 4 +-
finley/test/python/FCT_test2.py | 4 +-
finley/test/python/OutTest.py | 4 +-
finley/test/python/PoissonSolverTest.py | 4 +-
finley/test/python/RecTest.py | 4 +-
finley/test/python/SConscript | 5 +-
finley/test/python/axisymm-splitB.py | 4 +-
finley/test/python/blocktest.py | 4 +-
finley/test/python/brick.py | 4 +-
finley/test/python/coalgas.py | 4 +-
finley/test/python/convection.py | 4 +-
finley/test/python/damage.py | 4 +-
finley/test/python/generate_dumps.py | 4 +-
finley/test/python/generate_meshes.py | 4 +-
finley/test/python/linearElastic.py | 4 +-
finley/test/python/localization.py | 4 +-
finley/test/python/lumping_advection_test.py | 4 +-
finley/test/python/lumping_wave_test.py | 4 +-
finley/test/python/rayleigh_taylor_instabilty.py | 4 +-
finley/test/python/rectangle.py | 4 +-
finley/test/python/run_amg.py | 4 +-
finley/test/python/run_darcy.py | 4 +-
finley/test/python/run_escriptOnFinley.py | 10 +-
finley/test/python/run_generators.py | 4 +-
finley/test/python/run_inputOutput.py | 4 +-
finley/test/python/run_linearPDEsOnFinley1_2D1.py | 4 +-
finley/test/python/run_linearPDEsOnFinley1_2D2.py | 4 +-
finley/test/python/run_linearPDEsOnFinley1_3D1.py | 4 +-
.../python/run_linearPDEsOnFinley1_3D2_part1.py | 4 +-
.../python/run_linearPDEsOnFinley1_3D2_part2.py | 4 +-
.../python/run_linearPDEsOnFinley1_3D2_part3-1.py | 4 +-
.../python/run_linearPDEsOnFinley1_3D2_part3-2.py | 4 +-
.../python/run_linearPDEsOnFinley1_3D2_part3-3.py | 4 +-
.../python/run_linearPDEsOnFinley1_3D2_part3-4.py | 4 +-
.../python/run_linearPDEsOnFinley1_3D2_part4.py | 4 +-
finley/test/python/run_linearPDEsOnFinley2.py | 4 +-
finley/test/python/run_linearPDEsOnFinley3.py | 4 +-
finley/test/python/run_linearPDEsOnFinleyMacro.py | 4 +-
finley/test/python/run_models.py | 4 +-
finley/test/python/run_nlpde2dOnFinley.py | 4 +-
finley/test/python/run_nlpde3dOnFinley.py | 4 +-
finley/test/python/run_simplesolve.py | 4 +-
.../test/python/run_splitworldOnFinley.py | 31 +-
finley/test/python/run_utilOnFinley.py | 8 +-
finley/test/python/run_visualization_interface.py | 4 +-
finley/test/python/runcoalgas.py | 4 +-
finley/test/python/seismic_wave.py | 4 +-
finley/test/python/slip_stress_mesh_old.py | 4 +-
finley/test/python/slip_stress_old.py | 4 +-
finley/test/python/stokes_problems.py | 4 +-
finley/test/python/subduction1.py | 4 +-
finley/test/python/subduction1_gen.py | 4 +-
finley/test/python/time_chunks.py | 4 +-
finley/test/python/tp.py | 4 +-
modellib/py_src/SConscript | 2 +-
modellib/py_src/flow.py | 4 +-
modellib/py_src/geometry.py | 4 +-
modellib/py_src/input.py | 4 +-
modellib/py_src/materials.py | 4 +-
modellib/py_src/mechanics.py | 4 +-
modellib/py_src/probe.py | 4 +-
modellib/py_src/temperature.py | 4 +-
modellib/py_src/tsunami.py.old | 4 +-
modellib/py_src/visualization.py | 4 +-
modellib/test/python/SConscript | 2 +-
modellib/test/python/drucker_prager.py | 4 +-
modellib/test/python/run_convection.py | 4 +-
modellib/test/python/run_domainreaders.py | 4 +-
modellib/test/python/run_flow.py | 4 +-
modellib/test/python/run_temp.py | 4 +-
paso/profiling/Paso_tests.cpp | 2 +-
paso/profiling/Paso_tests.h | 2 +-
paso/profiling/SConscript | 2 +-
paso/src/AMG.cpp | 2 +-
paso/src/AMG_Interpolation.cpp | 2 +-
paso/src/AMG_Prolongation.cpp | 2 +-
paso/src/AMG_Restriction.cpp | 2 +-
paso/src/AMG_Root.cpp | 2 +-
paso/src/AML.cpp.old | 4 +-
paso/src/BOOMERAMG.cpp | 2 +-
paso/src/BOOMERAMG.h | 2 +-
paso/src/BiCGStab.cpp | 2 +-
paso/src/BlockOps.h | 2 +-
paso/src/Coupler.cpp | 2 +-
paso/src/Coupler.h | 2 +-
paso/src/Distribution.cpp | 2 +-
paso/src/Distribution.h | 2 +-
paso/src/FCT_Solver.cpp | 2 +-
paso/src/FCT_Solver.h | 2 +-
paso/src/FluxLimiter.cpp | 2 +-
paso/src/FluxLimiter.h | 2 +-
paso/src/Functions.cpp | 2 +-
paso/src/Functions.h | 2 +-
paso/src/GMRES.cpp | 2 +-
paso/src/GMRES2.cpp | 2 +-
paso/src/GSMPI.cpp.old | 2 +-
paso/src/ILU.cpp | 2 +-
paso/src/LocalAMG.cpp | 2 +-
paso/src/LocalAMG_Prolongation.cpp | 2 +-
paso/src/MINRES.cpp | 2 +-
paso/src/MKL.cpp | 2 +-
paso/src/MKL.h | 2 +-
paso/src/MergedSolver.cpp | 2 +-
paso/src/MergedSolver.h | 2 +-
paso/src/NewtonGMRES.cpp | 2 +-
paso/src/Options.cpp | 2 +-
paso/src/Options.h | 2 +-
paso/src/PCG.cpp | 2 +-
paso/src/Paso.h | 2 +-
paso/src/PasoUtil.cpp | 2 +-
paso/src/PasoUtil.h | 2 +-
paso/src/Pattern.cpp | 2 +-
paso/src/Pattern.h | 2 +-
paso/src/Pattern_mis.cpp | 2 +-
paso/src/Pattern_reduceBandwidth.cpp | 2 +-
paso/src/Preconditioner.cpp | 2 +-
paso/src/Preconditioner.h | 2 +-
paso/src/RILU.cpp | 2 +-
paso/src/ReactiveSolver.cpp | 2 +-
paso/src/ReactiveSolver.h | 2 +-
paso/src/SConscript | 2 +-
paso/src/SchurComplement.cpp | 2 +-
paso/src/SharedComponents.h | 2 +-
paso/src/Smoother.cpp | 2 +-
paso/src/Solver.cpp | 8 +-
paso/src/Solver.h | 2 +-
paso/src/Solver_Function.cpp | 2 +-
paso/src/Solver_applyBlockDiagonalMatrix.cpp.old | 2 +-
paso/src/SparseMatrix.cpp | 2 +-
paso/src/SparseMatrix.h | 2 +-
paso/src/SparseMatrix_MatrixMatrix.cpp | 2 +-
paso/src/SparseMatrix_MatrixMatrixTranspose.cpp | 2 +-
paso/src/SparseMatrix_MatrixVector.cpp | 2 +-
paso/src/SparseMatrix_getSubmatrix.cpp | 2 +-
paso/src/SparseMatrix_nullifyRowsAndCols.cpp | 2 +-
paso/src/SparseMatrix_saveHB.cpp | 2 +-
paso/src/SystemMatrix.cpp | 2 +-
paso/src/SystemMatrix.h | 2 +-
paso/src/SystemMatrixPattern.cpp | 2 +-
paso/src/SystemMatrixPattern.h | 2 +-
paso/src/SystemMatrixPattern_unrollBlocks.cpp | 2 +-
paso/src/SystemMatrix_MatrixVector.cpp | 2 +-
paso/src/SystemMatrix_copyRemoteCoupleBlock.cpp | 2 +-
paso/src/SystemMatrix_debug.cpp | 2 +-
paso/src/SystemMatrix_extendedRows.cpp | 2 +-
paso/src/SystemMatrix_loadMM.cpp | 2 +-
paso/src/SystemMatrix_mergeMainAndCouple.cpp | 2 +-
paso/src/TFQMR.cpp | 2 +-
paso/src/Transport.cpp | 2 +-
paso/src/Transport.h | 2 +-
paso/src/Transport_solve.cpp | 2 +-
paso/src/UMFPACK.cpp | 2 +-
paso/src/UMFPACK.h | 2 +-
paso/src/mmio.cpp | 2 +-
paso/src/mmio.h | 2 +-
paso/src/performance.cpp | 2 +-
paso/src/performance.h | 2 +-
paso/src/solve.cpp | 2 +-
pasowrap/py_src/SConscript | 2 +-
pasowrap/py_src/__init__.py | 4 +-
pasowrap/py_src/pasowrap.py | 4 +-
pasowrap/src/PasoException.cpp | 2 +-
pasowrap/src/PasoException.h | 2 +-
pasowrap/src/SConscript | 2 +-
pasowrap/src/SystemMatrixAdapter.cpp | 6 +-
pasowrap/src/SystemMatrixAdapter.h | 2 +-
pasowrap/src/TransportProblemAdapter.cpp | 6 +-
pasowrap/src/TransportProblemAdapter.h | 2 +-
pasowrap/src/pasowrapcpp.cpp | 4 +-
pasowrap/src/system_dep.h | 17 +-
pycad/py_src/SConscript | 2 +-
pycad/py_src/Triangle.py | 4 +-
pycad/py_src/__init__.py | 4 +-
pycad/py_src/design.py | 6 +-
pycad/py_src/extras.py | 4 +-
pycad/py_src/gmsh.py | 4 +-
pycad/py_src/primitives.py | 4 +-
pycad/py_src/shapes.py | 4 +-
pycad/py_src/transformations.py | 4 +-
pycad/test/python/SConscript | 10 +-
pycad/test/python/run_pycad_test.py | 4 +-
pythonMPI/src/SConscript | 2 +-
pythonMPI/src/ScriptMPI.cpp | 2 +-
pythonMPI/src/ScriptMPIredirect.cpp | 2 +-
ripley/py_src/MultiResolutionDomain.py | 96 +
ripley/py_src/SConscript | 2 +-
ripley/py_src/__init__.py | 6 +-
ripley/src/AbstractAssembler.h | 2 +-
ripley/src/Brick.cpp | 262 +-
ripley/src/Brick.h | 10 +-
ripley/src/DefaultAssembler2D.cpp | 3303 +++----
ripley/src/DefaultAssembler2D.h | 2 +-
ripley/src/DefaultAssembler3D.cpp | 9383 ++++++++++----------
ripley/src/DefaultAssembler3D.h | 2 +-
ripley/src/LameAssembler2D.cpp | 180 +-
ripley/src/LameAssembler2D.h | 2 +-
ripley/src/LameAssembler3D.cpp | 608 +-
ripley/src/LameAssembler3D.h | 2 +-
ripley/src/MultiBrick.cpp | 1563 ++++
ripley/src/MultiBrick.h | 204 +
ripley/src/MultiRectangle.cpp | 963 ++
ripley/src/MultiRectangle.h | 177 +
ripley/src/Rectangle.cpp | 178 +-
ripley/src/Rectangle.h | 46 +-
ripley/src/Ripley.h | 2 +-
ripley/src/RipleyDomain.cpp | 11 +-
ripley/src/RipleyDomain.h | 25 +-
ripley/src/RipleyException.cpp | 2 +-
ripley/src/RipleyException.h | 2 +-
ripley/src/RipleySystemMatrix.cu | 2 +-
ripley/src/RipleySystemMatrix.h | 2 +-
ripley/src/SConscript | 6 +-
ripley/src/WaveAssembler2D.cpp | 105 +-
ripley/src/WaveAssembler2D.h | 16 +-
ripley/src/WaveAssembler3D.cpp | 623 +-
ripley/src/WaveAssembler3D.h | 16 +-
ripley/src/blocktools.cpp | 2 +-
ripley/src/blocktools.h | 2 +-
ripley/src/blocktools2.cpp | 2 +-
ripley/src/domainhelpers.cpp | 6 +-
ripley/src/domainhelpers.h | 2 +-
ripley/src/generate_assemblage_cpp.py | 2 +-
ripley/src/ripleycpp.cpp | 363 +-
ripley/src/system_dep.h | 17 +-
ripley/test/SConscript | 2 +-
ripley/test/SystemMatrixTestCase.cpp | 2 +-
ripley/test/SystemMatrixTestCase.h | 2 +-
ripley/test/python/SConscript | 4 +-
.../test/python/run_customAssemblersOnMultiRes.py | 83 +
ripley/test/python/run_customAssemblersOnRipley.py | 245 +-
ripley/test/python/run_diracOnMultiRes.py | 142 +
ripley/test/python/run_diracOnRipley.py | 19 +-
ripley/test/python/run_escriptOnMultiResolution.py | 395 +
ripley/test/python/run_escriptOnRipley.py | 13 +-
...PDEsOnRipley.py => run_linearPDEsOnMultiRes.py} | 17 +-
ripley/test/python/run_linearPDEsOnRipley.py | 4 +-
...DEOnRipley.py => run_nonlinearPDEOnMultiRes.py} | 16 +-
ripley/test/python/run_nonlinearPDEOnRipley.py | 4 +-
...WriteOnRipley.py => run_readWriteOnMultiRes.py} | 178 +-
ripley/test/python/run_readWriteOnRipley.py | 4 +-
...lveOnRipley.py => run_simplesolveOnMultiRes.py} | 18 +-
ripley/test/python/run_simplesolveOnRipley.py | 4 +-
.../{run_utilOnRipley.py => run_utilOnMultiRes.py} | 25 +-
ripley/test/python/run_utilOnRipley.py | 9 +-
ripley/test/ripley_UnitTest.cpp | 2 +-
run-escript.in | 29 +-
scons/badger_options.py | 2 +-
scons/cgisrv3_options.py | 2 +-
scons/cgisrv6_options.py | 2 +-
scons/copper_options.py | 2 +-
scons/epicuser_options.py | 2 +-
scons/ferret_options.py | 2 +-
scons/gerbil_options.py | 2 +-
scons/guineapig_intel_noomp_options.py | 2 +-
scons/guineapig_intel_options.py | 2 +-
scons/guineapig_options.py | 4 +-
scons/guineapig_py3_options.py | 2 +-
scons/hamster_options.py | 4 +-
...homebrew_10.10_options.py => magnus_options.py} | 141 +-
scons/mara_options.py | 2 +-
scons/mole_clang_options.py | 4 +-
scons/mole_gcc_options.py | 240 -
scons/porcupine_options.py | 2 +-
scons/raijin_options.py | 2 +-
scons/sage_options.py | 4 +-
scons/sage_py3_options.py | 2 +-
...omp_options.py => savanna_ice_noomp_options.py} | 4 +-
.../{badger_options.py => savanna_ice_options.py} | 14 +-
scons/savanna_noomp_options.py | 2 +-
scons/savanna_options.py | 37 +-
scons/squirrel_options.py | 2 +-
scons/standalone_options.py | 2 +-
scons/templates/centos7_0_options.py | 2 +-
scons/templates/fedora21_5_options.py | 2 +-
scons/templates/freebsd10_0_options.py | 2 +-
scons/templates/homebrew_10.10_options.py | 2 +-
scons/templates/homebrew_options.py | 2 +-
scons/templates/jessie_mpi_options.py | 2 +-
scons/templates/jessie_options.py | 6 +-
scons/templates/jessie_py3_mpi_options.py | 2 +-
scons/templates/jessie_py3_options.py | 2 +-
scons/templates/macports_10.10_options.py | 2 +-
scons/templates/macports_options.py | 2 +-
scons/templates/opensuse13_2_options.py | 2 +-
scons/templates/trusty_options.py | 2 +-
scons/templates/utopic_options.py | 2 +-
scons/templates/wheezy_mpi_options.py | 2 +-
scons/templates/wheezy_options.py | 2 +-
scons/templates/wheezy_py3_mpi_options.py | 2 +-
scons/templates/wheezy_py3_options.py | 2 +-
scons/templates/windows_intelc_options.py | 2 +-
scons/templates/windows_msvc90_options.py | 2 +-
scons/templates/windows_options.py | 2 +-
scons/vayu_options.py | 2 +-
scons/vm_options.py | 2 +-
scons/vmw_options.py | 2 +-
scripts/extracttests.sh | 80 +-
site_scons/dependencies.py | 15 +-
site_scons/extractdebbuild.py | 4 +-
site_scons/grouptest.py | 33 +-
site_scons/site_init.py | 9 +-
speckley/py_src/SConscript | 2 +-
speckley/py_src/__init__.py | 4 +-
speckley/src/AbstractAssembler.cpp | 7 +-
speckley/src/AbstractAssembler.h | 2 +-
speckley/src/Brick.cpp | 579 +-
speckley/src/Brick.h | 17 +-
speckley/src/BrickGradients.cpp | 736 +-
speckley/src/BrickIntegrals.cpp | 18 +
.../{BrickIntegrals.cpp => BrickReductions.cpp} | 170 +-
speckley/src/CrossDomainCoupler.cpp | 7 +-
speckley/src/CrossDomainCoupler.h | 2 +-
speckley/src/DefaultAssembler2D.cpp | 7 +-
speckley/src/DefaultAssembler2D.h | 2 +-
speckley/src/DefaultAssembler3D.cpp | 7 +-
speckley/src/DefaultAssembler3D.h | 2 +-
speckley/src/Rectangle.cpp | 324 +-
speckley/src/Rectangle.h | 17 +-
speckley/src/RectangleGradients.cpp | 516 +-
speckley/src/RectangleIntegrals.cpp | 18 +
speckley/src/RectangleReductions.cpp | 200 +
speckley/src/SConscript | 8 +-
speckley/src/Speckley.h | 2 +-
speckley/src/SpeckleyDomain.cpp | 103 +-
speckley/src/SpeckleyDomain.h | 33 +-
speckley/src/SpeckleyException.cpp | 6 +-
speckley/src/SpeckleyException.h | 2 +-
...{DefaultAssembler2D.cpp => WaveAssembler2D.cpp} | 259 +-
.../{DefaultAssembler2D.h => WaveAssembler2D.h} | 72 +-
...{DefaultAssembler3D.cpp => WaveAssembler3D.cpp} | 393 +-
.../{DefaultAssembler3D.h => WaveAssembler3D.h} | 66 +-
speckley/src/domainhelpers.cpp | 6 +-
speckley/src/domainhelpers.h | 2 +-
speckley/src/lagrange_functions.h | 2 +-
speckley/src/speckleycpp.cpp | 26 +-
speckley/src/system_dep.h | 17 +-
speckley/test/SConscript | 2 +-
speckley/test/python/SConscript | 4 +-
speckley/test/python/run_SpeckleyRipleyCoupler.py | 32 +-
.../test/python/run_customAssemblersOnSpeckley.py | 269 +
speckley/test/python/run_diracOnSpeckley.py | 4 +-
speckley/test/python/run_readWriteOnSpeckley.py | 4 +-
speckley/test/python/run_specialOnSpeckley.py | 41 +-
tools/escriptconvert/SConscript | 2 +-
tools/escriptconvert/escriptconvert.cpp | 2 +-
tools/escriptconvert/esdcreate.cpp | 2 +-
{pasowrap/py_src => tools/overlord}/SConscript | 18 +-
tools/overlord/overlord.c | 70 +
tools/testrunner.py | 80 +-
weipa/py_src/SConscript | 2 +-
weipa/py_src/__init__.py | 4 +-
weipa/src/DataVar.cpp | 6 +-
weipa/src/DataVar.h | 2 +-
weipa/src/DomainChunk.h | 2 +-
weipa/src/ElementData.h | 2 +-
weipa/src/EscriptDataset.cpp | 6 +-
weipa/src/EscriptDataset.h | 2 +-
weipa/src/FinleyDomain.cpp | 6 +-
weipa/src/FinleyDomain.h | 2 +-
weipa/src/FinleyElements.cpp | 6 +-
weipa/src/FinleyElements.h | 2 +-
weipa/src/FinleyNodes.cpp | 5 +-
weipa/src/FinleyNodes.h | 2 +-
weipa/src/NodeData.h | 2 +-
weipa/src/RipleyDomain.cpp | 5 +-
weipa/src/RipleyDomain.h | 2 +-
weipa/src/RipleyElements.cpp | 117 +-
weipa/src/RipleyElements.h | 2 +-
weipa/src/RipleyNodes.cpp | 5 +-
weipa/src/RipleyNodes.h | 2 +-
weipa/src/SConscript | 2 +-
weipa/src/SpeckleyDomain.cpp | 10 +-
weipa/src/SpeckleyDomain.h | 2 +-
weipa/src/SpeckleyElements.cpp | 14 +-
weipa/src/SpeckleyElements.h | 2 +-
weipa/src/SpeckleyNodes.cpp | 5 +-
weipa/src/SpeckleyNodes.h | 2 +-
weipa/src/VisItControl.cpp | 5 +-
weipa/src/VisItControl.h | 2 +-
weipa/src/VisItData.cpp | 6 +-
weipa/src/VisItData.h | 2 +-
weipa/src/weipa.h | 2 +-
weipa/src/weipacpp.cpp | 5 +-
weipa/test/EscriptDatasetTestCase.cpp | 9 +-
weipa/test/EscriptDatasetTestCase.h | 2 +-
weipa/test/SConscript | 2 +-
weipa/test/python/SConscript | 4 +-
weipa/test/python/run_savesilo_tests.py | 4 +-
weipa/test/python/run_savevtk_tests.py | 4 +-
weipa/test/weipa_UnitTest.cpp | 6 +-
1135 files changed, 24371 insertions(+), 15947 deletions(-)
create mode 100644 debian/changelog.trivial
copy modellib/py_src/__init__.py => debian/patches/series (100%)
create mode 100644 debian/python-escript-doc.dirs
create mode 100644 debian/python-escript-doc.examples
create mode 100644 debian/python-escript-doc.install
create mode 100644 debian/python-escript-doc.links
create mode 100644 debian/python-escript-doc.lintian-overrides
create mode 100644 debian/python-escript-mpi.dirs
create mode 100644 debian/python-escript-mpi.install
create mode 100644 debian/python-escript-mpi.lintian-overrides
create mode 100644 debian/python-escript-mpi.manpages
create mode 100644 debian/python-escript.dirs
create mode 100644 debian/python-escript.install
create mode 100644 debian/python-escript.lintian-overrides
create mode 100644 debian/python-escript.manpages
create mode 100644 debian/python3-escript-mpi.dirs
create mode 100644 debian/python3-escript-mpi.install
create mode 100644 debian/python3-escript-mpi.lintian-overrides
create mode 100644 debian/python3-escript-mpi.manpages
rename debian/{python-escript3-mpi.postinst => python3-escript-mpi.postinst} (84%)
rename debian/{python-escript3-mpi.prerm => python3-escript-mpi.prerm} (100%)
create mode 100644 debian/python3-escript.dirs
create mode 100644 debian/python3-escript.install
create mode 100644 debian/python3-escript.lintian-overrides
create mode 100644 debian/python3-escript.manpages
rename debian/{python-escript3.postinst => python3-escript.postinst} (85%)
rename debian/{python-escript3.prerm => python3-escript.prerm} (100%)
delete mode 100644 debian/source/lintian-overrides
delete mode 100644 debprep.notes
create mode 100644 doc/cookbook/verinfo.tex
delete mode 100644 doc/install/binary.tex
delete mode 100644 doc/install/bincommon.tex
delete mode 100644 doc/install/binwin.tex
delete mode 100644 doc/install/srcommon.tex
create mode 100644 doc/install/verinfo.tex
delete mode 100644 doc/install/winstall.tex
create mode 100644 doc/inversion/verinfo.tex
create mode 100644 doc/user/verinfo.tex
create mode 100644 doc/verinfo.tex
delete mode 100644 downunder/py_src/forwardmodels.py
copy {speckley/py_src => downunder/py_src/forwardmodels}/__init__.py (65%)
create mode 100644 downunder/py_src/forwardmodels/acoustic.py
create mode 100644 downunder/py_src/forwardmodels/base.py
create mode 100644 downunder/py_src/forwardmodels/dcresistivity.py
create mode 100644 downunder/py_src/forwardmodels/gravity.py
create mode 100644 downunder/py_src/forwardmodels/magnetic.py
create mode 100644 downunder/py_src/forwardmodels/magnetotelluric2d.py
create mode 100644 downunder/py_src/forwardmodels/pressure.py
create mode 100644 downunder/py_src/forwardmodels/subsidence.py
copy downunder/py_src/{inversioncostfunctions.py => splitinversioncostfunctions.py} (54%)
create mode 100644 downunder/py_src/splitminimizers.py
copy downunder/py_src/{regularizations.py => splitregularizations.py} (97%)
copy escriptcore/src/{SplitWorldException.cpp => AbstractReducer.cpp} (51%)
rename escriptcore/src/{Reducer.h => AbstractReducer.h} (60%)
rename escriptcore/src/{Reducer.cpp => MPIDataReducer.cpp} (90%)
create mode 100644 escriptcore/src/MPIDataReducer.h
create mode 100644 escriptcore/src/MPIScalarReducer.cpp
create mode 100644 escriptcore/src/MPIScalarReducer.h
create mode 100644 escriptcore/src/NonReducedVariable.cpp
create mode 100644 escriptcore/src/NonReducedVariable.h
create mode 100644 escriptcore/test/python/test_splitworld.py
copy escriptcore/src/UtilC.h => esysUtils/src/first.h (70%)
create mode 100644 esysUtils/src/pyerr.cpp
copy escriptcore/src/UtilC.h => esysUtils/src/pyerr.h (63%)
copy escriptcore/test/python/run_testdomain.py => finley/test/python/run_splitworldOnFinley.py (60%)
create mode 100644 ripley/py_src/MultiResolutionDomain.py
create mode 100644 ripley/src/MultiBrick.cpp
create mode 100644 ripley/src/MultiBrick.h
create mode 100644 ripley/src/MultiRectangle.cpp
create mode 100644 ripley/src/MultiRectangle.h
create mode 100644 ripley/test/python/run_customAssemblersOnMultiRes.py
create mode 100644 ripley/test/python/run_diracOnMultiRes.py
create mode 100644 ripley/test/python/run_escriptOnMultiResolution.py
copy ripley/test/python/{run_linearPDEsOnRipley.py => run_linearPDEsOnMultiRes.py} (84%)
copy ripley/test/python/{run_nonlinearPDEOnRipley.py => run_nonlinearPDEOnMultiRes.py} (71%)
copy ripley/test/python/{run_readWriteOnRipley.py => run_readWriteOnMultiRes.py} (70%)
copy ripley/test/python/{run_simplesolveOnRipley.py => run_simplesolveOnMultiRes.py} (96%)
copy ripley/test/python/{run_utilOnRipley.py => run_utilOnMultiRes.py} (80%)
copy scons/{templates/homebrew_10.10_options.py => magnus_options.py} (67%)
delete mode 100644 scons/mole_gcc_options.py
copy scons/{savanna_noomp_options.py => savanna_ice_noomp_options.py} (89%)
copy scons/{badger_options.py => savanna_ice_options.py} (68%)
copy speckley/src/{BrickIntegrals.cpp => BrickReductions.cpp} (56%)
create mode 100644 speckley/src/RectangleReductions.cpp
copy speckley/src/{DefaultAssembler2D.cpp => WaveAssembler2D.cpp} (71%)
copy speckley/src/{DefaultAssembler2D.h => WaveAssembler2D.h} (64%)
copy speckley/src/{DefaultAssembler3D.cpp => WaveAssembler3D.cpp} (58%)
copy speckley/src/{DefaultAssembler3D.h => WaveAssembler3D.h} (68%)
create mode 100644 speckley/test/python/run_customAssemblersOnSpeckley.py
copy {pasowrap/py_src => tools/overlord}/SConscript (63%)
create mode 100644 tools/overlord/overlord.c
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