[petsc4py] branch master updated (3cabce4 -> d171d81)
Drew Parsons
dparsons at moszumanska.debian.org
Sat Oct 31 08:37:22 UTC 2015
This is an automated email from the git hooks/post-receive script.
dparsons pushed a change to branch master
in repository petsc4py.
from 3cabce4 Update Vcs fields for git migration
adds 0383b00 new upstream tarball 3.6.0
new bc070ea Merge branch 'upstream' (3.6.0)
new 58c8b98 update debian control files
new 7ca1860 update debian build scripts
new 4c0f88d upload 3.6.0-1 to unstable
new d171d81 Build-Depends: cython, chrpath
The 5 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails. The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.
Summary of changes:
CHANGES.rst | 195 +
DESCRIPTION.rst | 52 +
HISTORY.txt | 83 -
LICENSE.rst | 33 +
LICENSE.txt | 12 -
MANIFEST.in | 15 +-
PKG-INFO | 68 +-
README.rst | 25 +
README.txt | 38 -
conf/baseconf.py | 770 +
conf/core/__init__.py | 1 -
conf/core/confcore.py | 520 -
conf/core/confutils.py | 185 -
conf/cythonize.py | 110 +-
conf/epydoc.cfg | 6 +-
conf/epydocify.py | 16 +
conf/metadata.py | 6 +-
conf/petscconf.py | 38 +-
debian/.git-dpm | 11 -
debian/changelog | 11 +-
debian/compat | 2 +-
debian/control | 17 +-
debian/copyright | 166 +-
debian/doc-base | 16 +
debian/docs | 5 +-
debian/examples | 1 +
debian/info | 1 +
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debian/patches/series | 1 -
debian/rules | 57 +-
debian/source/format | 2 +-
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demo/binary-io/matvecio.py | 47 +
demo/bratu2d/bratu2d.py | 50 +-
demo/bratu2d/makefile | 25 +-
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demo/bratu3d/makefile | 23 +
demo/kspsolve/makefile | 25 +
demo/kspsolve/petsc-cg.tex | 21 -
demo/kspsolve/petsc-ksp.py | 2 +-
demo/kspsolve/petsc-mat.py | 6 +-
demo/kspsolve/test_mat_cg.py | 52 +-
demo/kspsolve/test_mat_ksp.py | 46 +-
demo/makefile | 11 +
demo/ode/ce.py | 7 +-
demo/ode/heat.py | 133 +
demo/ode/orego.py | 99 +
demo/ode/rober.py | 33 +-
demo/perftest/App.f90 | 114 +
demo/perftest/App.pyf | 25 +
demo/perftest/driver.c | 152 +
demo/perftest/driver.py | 130 +
demo/perftest/makefile | 33 +
demo/perftest/makefile.f2py | 13 +
demo/perftest/makefile.petsc | 24 +
demo/poisson2d/makefile | 16 +
demo/poisson2d/poisson2d.py | 98 +
demo/poisson3d/del2lib.f90 | 8 +-
demo/poisson3d/del2mat.h | 9 +-
demo/poisson3d/del2mat.py | 4 +-
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demo/poisson3d/makefile.petsc | 30 +-
demo/poisson3d/poisson3d.c | 18 +-
demo/poisson3d/poisson3d.py | 28 +-
demo/taosolve/chwirut.py | 81 +
demo/taosolve/rosenbrock.py | 136 +
demo/wrap-cython/Bratu3D.pyx | 33 +
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demo/wrap-cython/Bratu3Dimpl.h | 14 +
demo/wrap-cython/makefile | 32 +
demo/wrap-cython/run_demo.py | 60 +
demo/{wrap-swig => wrap-cython}/setup.py | 52 +-
demo/wrap-f2py/.f2py_f2cmap | 1 +
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demo/wrap-f2py/Bratu2D.pyf | 39 +
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demo/wrap-f2py/run_demo.py | 27 +-
demo/wrap-f2py/setup.py | 29 +-
demo/wrap-swig/Bratu3D.c | 79 +-
demo/wrap-swig/Bratu3D.h | 11 +-
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docs/apiref/help.html | 6 +-
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docs/apiref/module-tree.html | 7 +-
docs/apiref/petsc4py-module.html | 18 +-
docs/apiref/petsc4py.PETSc-module.html | 212 +-
docs/apiref/petsc4py.PETSc.AO-class.html | 42 +-
docs/apiref/petsc4py.PETSc.AO.Type-class.html | 101 +-
docs/apiref/petsc4py.PETSc.Comm-class.html | 31 +-
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....html => petsc4py.PETSc.DMComposite-class.html} | 253 +-
...A-class.html => petsc4py.PETSc.DMDA-class.html} | 442 +-
... => petsc4py.PETSc.DMDA.ElementType-class.html} | 21 +-
...tsc4py.PETSc.DMDA.InterpolationType-class.html} | 21 +-
... => petsc4py.PETSc.DMDA.StencilType-class.html} | 21 +-
...class.html => petsc4py.PETSc.DMPlex-class.html} | 784 +-
...lass.html => petsc4py.PETSc.DMShell-class.html} | 417 +-
docs/apiref/petsc4py.PETSc.Error-class.html | 27 +-
docs/apiref/petsc4py.PETSc.IS-class.html | 238 +-
docs/apiref/petsc4py.PETSc.IS.Type-class.html | 25 +-
docs/apiref/petsc4py.PETSc.InsertMode-class.html | 71 +-
docs/apiref/petsc4py.PETSc.KSP-class.html | 245 +-
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docs/apiref/petsc4py.PETSc.KSP.NormType-class.html | 31 +-
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src/PETSc/petscpc.pxi | 134 +-
src/PETSc/petscrand.pxi | 4 +-
src/PETSc/petscsct.pxi | 14 +
src/PETSc/petscsec.pxi | 53 +
src/PETSc/petscsf.pxi | 28 +
src/PETSc/petscsnes.pxi | 321 +-
src/PETSc/petscsys.pxi | 85 +-
src/PETSc/petsctao.pxi | 310 +
src/PETSc/petscts.pxi | 335 +-
src/PETSc/petscvec.pxi | 316 +-
src/PETSc/petscvwr.pxi | 70 +-
src/__init__.py | 17 +-
src/{help.py => __main__.py} | 51 +-
src/include/arraynpy.h | 126 -
src/include/compat.h | 39 +-
src/include/compat/232/private/kspimpl.h | 130 -
src/include/compat/232/private/matimpl.h | 994 -
src/include/compat/232/private/snesimpl.h | 145 -
src/include/compat/232/private/tsimpl.h | 89 -
src/include/compat/hdf5.h | 31 +
src/include/compat/mpi.h | 43 +-
src/include/compat/petsc.h | 88 -
src/include/compat/petscda.h | 56 -
src/include/compat/petscis.h | 156 -
src/include/compat/petscksp.h | 156 -
src/include/compat/petscmat.h | 724 -
src/include/compat/petscpc.h | 28 -
src/include/compat/petscsnes.h | 279 -
src/include/compat/petscsys.h | 15 -
src/include/compat/petscts.h | 163 -
src/include/compat/petscvec.h | 118 -
src/include/compat/petscviewer.h | 76 -
src/include/context.h | 174 -
src/include/custom.h | 1033 +-
src/include/cython.h | 53 +
src/include/initpkg.h | 90 +-
src/include/pep3118.h | 99 +
src/include/petsc4py/PETSc.pxd | 105 +-
src/include/petsc4py/numpy.h | 61 +
src/include/petsc4py/petsc4py.PETSc.h | 164 +-
src/include/petsc4py/petsc4py.PETSc_api.h | 330 +-
src/include/petsc4py/petsc4py.h | 10 -
src/include/petsc4py/petsc4py.i | 256 +-
src/include/petsc4py/petsc4py_PETSc_npy.h | 30 -
src/include/scalar.h | 28 +-
src/lib/__init__.py | 6 +-
src/libpetsc4py.c | 5 +
src/libpetsc4py.h | 16 +
src/libpetsc4py/custom.h | 113 +
src/libpetsc4py/libpetsc4py.c | 28047 ++
src/libpetsc4py/libpetsc4py.h | 40 +
src/libpetsc4py/libpetsc4py.pyx | 2560 +
src/petsc4py.PETSc.c | 323499 +++++++++++++-----
src/petsc4py.PETSc.pyx | 1 +
src/source/libpetsc4py.c | 44 -
src/source/libpetsc4py.h | 136 -
src/source/src/inline/python.h | 300 -
src/source/src/ksp/ksp/impls/python/makefile | 18 -
src/source/src/ksp/ksp/impls/python/python.c | 405 -
src/source/src/ksp/pc/impls/python/makefile | 18 -
src/source/src/ksp/pc/impls/python/python.c | 496 -
src/source/src/mat/impls/python/makefile | 18 -
src/source/src/mat/impls/python/python.c | 869 -
src/source/src/snes/impls/python/GNUmakefile | 14 -
src/source/src/snes/impls/python/ex1.c | 72 -
src/source/src/snes/impls/python/ex1.py | 39 -
src/source/src/snes/impls/python/makefile | 19 -
src/source/src/snes/impls/python/mysolver.py | 105 -
src/source/src/snes/impls/python/python.c | 764 -
src/source/src/ts/impls/python/makefile | 18 -
src/source/src/ts/impls/python/python.c | 788 -
test/runtests.py | 280 +-
test/test_comm.py | 17 +-
test/test_da.py | 135 -
test/test_dmda.py | 388 +
test/test_dmplex.py | 169 +
test/test_dmshell.py | 218 +
test/test_gc.py | 10 +-
test/test_is.py | 38 +-
test/test_ksp.py | 143 +-
test/test_ksp_py.py | 112 +
test/test_lgmap.py | 78 +-
test/test_mat_aij.py | 517 +-
test/test_mat_dense.py | 21 +-
test/test_mat_fact.py | 13 +-
test/test_mat_py.py | 62 +-
test/test_nsp.py | 4 +-
test/test_object.py | 70 +-
test/test_optdb.py | 8 +-
test/test_pc_py.py | 37 +-
test/test_snes.py | 125 +-
test/test_snes_py.py | 103 +
test/test_sys.py | 2 +
test/test_tao.py | 63 +
test/test_ts.py | 204 +-
test/test_ts_py.py | 119 +-
test/test_vec.py | 46 +-
478 files changed, 298542 insertions(+), 113513 deletions(-)
create mode 100644 CHANGES.rst
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delete mode 100644 demo/kspsolve/petsc-cg.tex
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copy demo/{wrap-swig => wrap-cython}/setup.py (55%)
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copy docs/apiref/{petsc4py.PETSc.DA-class.html => petsc4py.PETSc.DM-class.html} (67%)
copy docs/apiref/{petsc4py.PETSc.PC.Side-class.html => petsc4py.PETSc.DM.BoundaryType-class.html} (82%)
copy docs/apiref/{petsc4py.PETSc.Viewer.Mode-class.html => petsc4py.PETSc.DM.Type-class.html} (71%)
copy docs/apiref/{petsc4py.PETSc.Random-class.html => petsc4py.PETSc.DMComposite-class.html} (62%)
rename docs/apiref/{petsc4py.PETSc.DA-class.html => petsc4py.PETSc.DMDA-class.html} (62%)
rename docs/apiref/{petsc4py.PETSc.DA.ElementType-class.html => petsc4py.PETSc.DMDA.ElementType-class.html} (87%)
rename docs/apiref/{petsc4py.PETSc.DA.InterpolationType-class.html => petsc4py.PETSc.DMDA.InterpolationType-class.html} (87%)
rename docs/apiref/{petsc4py.PETSc.DA.StencilType-class.html => petsc4py.PETSc.DMDA.StencilType-class.html} (87%)
copy docs/apiref/{petsc4py.PETSc.SNES-class.html => petsc4py.PETSc.DMPlex-class.html} (58%)
copy docs/apiref/{petsc4py.PETSc.Viewer-class.html => petsc4py.PETSc.DMShell-class.html} (57%)
copy docs/apiref/{petsc4py.PETSc.InsertMode-class.html => petsc4py.PETSc.Mat.FactorShiftType-class.html} (81%)
copy docs/apiref/{petsc4py.PETSc.DA.PeriodicType-class.html => petsc4py.PETSc.Mat.SORType-class.html} (79%)
copy docs/apiref/{petsc4py.PETSc.PC.Side-class.html => petsc4py.PETSc.PC.ASMType-class.html} (83%)
copy docs/apiref/{petsc4py.PETSc.PC.Side-class.html => petsc4py.PETSc.PC.CompositeType-class.html} (82%)
copy docs/apiref/{petsc4py.PETSc.PC.Side-class.html => petsc4py.PETSc.PC.GAMGType-class.html} (80%)
copy docs/apiref/{petsc4py.PETSc.PC.Side-class.html => petsc4py.PETSc.PC.GASMType-class.html} (83%)
copy docs/apiref/{petsc4py.PETSc.PC.Side-class.html => petsc4py.PETSc.PC.SchurFactType-class.html} (83%)
copy docs/apiref/{petsc4py.PETSc.PC.Side-class.html => petsc4py.PETSc.PC.SchurPreType-class.html} (83%)
copy docs/apiref/{petsc4py.PETSc.AO-class.html => petsc4py.PETSc.Partitioner-class.html} (78%)
copy docs/apiref/{petsc4py.PETSc.ScatterMode-class.html => petsc4py.PETSc.PartitionerType-class.html} (80%)
copy docs/apiref/{petsc4py.PETSc.Random-class.html => petsc4py.PETSc.SF-class.html} (83%)
copy docs/apiref/{petsc4py.PETSc.Random.Type-class.html => petsc4py.PETSc.SF.Type-class.html} (83%)
copy docs/apiref/{petsc4py.PETSc.NormType-class.html => petsc4py.PETSc.SNES.NormSchedule-class.html} (78%)
copy docs/apiref/{petsc4py.PETSc.IS-class.html => petsc4py.PETSc.Section-class.html} (67%)
copy docs/apiref/{petsc4py.PETSc.SNES-class.html => petsc4py.PETSc.TAO-class.html} (75%)
copy docs/apiref/{petsc4py.PETSc.SNES.ConvergedReason-class.html => petsc4py.PETSc.TAO.Reason-class.html} (61%)
copy docs/apiref/{petsc4py.PETSc.Mat.Option-class.html => petsc4py.PETSc.TAO.Type-class.html} (57%)
copy docs/apiref/{petsc4py.PETSc.Viewer.Size-class.html => petsc4py.PETSc.TS.ConvergedReason-class.html} (79%)
copy docs/apiref/{petsc4py.PETSc.NormType-class.html => petsc4py.PETSc.TS.EquationType-class.html} (76%)
rename docs/apiref/{petsc4py.PETSc.Truth-class.html => petsc4py.PETSc.TS.ExactFinalTimeOption-class.html} (82%)
copy docs/apiref/{petsc4py.PETSc.AO-class.html => petsc4py.PETSc.ViewerHDF5-class.html} (67%)
copy docs/apiref/{petsc4py.PETSc.InsertMode-class.html => petsc4py.PETSc._DMComposite_access-class.html} (68%)
copy docs/apiref/{petsc4py.PETSc.LogClass-class.html => petsc4py.PETSc._DMDA_Vec_array-class.html} (79%)
copy docs/apiref/{petsc4py.PETSc.InsertMode-class.html => petsc4py.PETSc._IS_buffer-class.html} (68%)
rename docs/apiref/{petsc4py.PETSc.DA.PeriodicType-class.html => petsc4py.PETSc._Mat_Stencil-class.html} (73%)
copy docs/apiref/{petsc4py.PETSc.LogClass-class.html => petsc4py.PETSc._Vec_LocalForm-class.html} (67%)
copy docs/apiref/{petsc4py.PETSc.ScatterMode-class.html => petsc4py.PETSc._Vec_buffer-class.html} (68%)
delete mode 100644 docs/apiref/petsc4py.help-module.html
delete mode 100644 docs/apiref/toc-petsc4py.help-module.html
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create mode 100644 docs/petsc4py.info
create mode 100644 docs/source/citing.rst
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create mode 100644 petsc4py.egg-info/SOURCES.txt
create mode 100644 petsc4py.egg-info/dependency_links.txt
create mode 100644 petsc4py.egg-info/not-zip-safe
create mode 100644 petsc4py.egg-info/requires.txt
create mode 100644 petsc4py.egg-info/top_level.txt
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create mode 100644 src/PETSc/DMDA.pyx
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create mode 100644 src/PETSc/DMShell.pyx
create mode 100644 src/PETSc/Partitioner.pyx
create mode 100644 src/PETSc/SF.pyx
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create mode 100644 src/PETSc/TAO.pyx
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create mode 100644 src/PETSc/petscsct.pxi
create mode 100644 src/PETSc/petscsec.pxi
create mode 100644 src/PETSc/petscsf.pxi
create mode 100644 src/PETSc/petsctao.pxi
rename src/{help.py => __main__.py} (54%)
delete mode 100644 src/include/arraynpy.h
delete mode 100644 src/include/compat/232/private/kspimpl.h
delete mode 100644 src/include/compat/232/private/matimpl.h
delete mode 100644 src/include/compat/232/private/snesimpl.h
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create mode 100644 src/include/compat/hdf5.h
delete mode 100644 src/include/compat/petsc.h
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delete mode 100644 src/include/compat/petscksp.h
delete mode 100644 src/include/compat/petscmat.h
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delete mode 100644 src/include/compat/petscts.h
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create mode 100644 test/test_tao.py
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