[r-cran-bayesfactor] 01/02: Merge tag 'upstream/0.9.12-2'

[Jonathon Love]

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in repository r-cran-bayesfactor.

commit d96db4090756b73e627e05167c38b2bc3f077329
Merge: 0052718 465ff08
Author: Jonathon Love <jon at thon.cc>
Date:   Sun Sep 20 20:07:45 2015 +0200

    Merge tag 'upstream/0.9.12-2'
    
    Upstream version 0.9.12-2

 DESCRIPTION                         |  16 ++--
 MD5                                 | 155 ++++++++++++++++++------------------
 NAMESPACE                           |  14 +++-
 NEWS                                |  13 +++
 R/BayesFactorPCL-package.R          |   2 +-
 R/RcppExports.R                     |   4 +
 R/aaGenerics.R                      |   9 +++
 R/anovaBF.R                         |  14 ++--
 R/common.R                          |  44 +++++++++-
 R/contingency-utility.R             |  26 ++++++
 R/generalTest-utility.R             |   5 +-
 R/generalTestBF.R                   |  12 ++-
 R/linearReg_R2stat.R                |  11 +--
 R/lmBF.R                            |   7 +-
 R/meta-ttest-utility.R              |  14 ++--
 R/methods-BFlinearModel-compare.R   |  21 +++--
 R/methods-BFmodel.R                 |  51 +++++++-----
 R/methods-BFmodelSample.R           |   3 +
 R/methods-BFprobability.R           |  85 +++++++++++++++-----
 R/nWayAOV-utility.R                 |  44 +++++++---
 R/nWayAOV.R                         |   4 +-
 R/onAttach.R                        |   2 +
 R/oneWayAOV_Fstat.R                 |  12 +--
 R/proportion-utility.R              |   9 ++-
 R/regressionBF-utility.R            |  15 +++-
 R/ttestBF.R                         |   2 +-
 R/ttest_tstat.R                     |  10 +--
 build/vignette.rds                  | Bin 328 -> 326 bytes
 inst/doc/compare_lme4.html          |  30 +++----
 inst/doc/manual.R                   |   6 ++
 inst/doc/manual.Rmd                 |  25 +++++-
 inst/doc/manual.html                | 111 ++++++++++++++++----------
 inst/doc/odds_probs.html            |   2 +-
 inst/doc/priors.html                |  10 +--
 man/BFBayesFactor-class.Rd          |   2 +-
 man/BFBayesFactorList-class.Rd      |   2 +-
 man/BFInfo.Rd                       |   2 +-
 man/BFManual.Rd                     |   2 +-
 man/BFodds-class.Rd                 |   2 +-
 man/BFprobability-class.Rd          |  12 ++-
 man/BayesFactor-package.Rd          |   4 +-
 man/anovaBF.Rd                      |  11 ++-
 man/as.BFBayesFactor.Rd             |   2 +-
 man/as.BFprobability.Rd             |   2 +-
 man/compare-methods.Rd              |   2 +-
 man/contingencyTableBF.Rd           |   2 +-
 man/enumerateGeneralModels.Rd       |   6 +-
 man/extractBF-methods.Rd            |   2 +-
 man/extractOdds-methods.Rd          |   2 +-
 man/extractProbabilities-methods.Rd |   2 +-
 man/filterBF.Rd                     |  26 ++++++
 man/generalTestBF.Rd                |  11 ++-
 man/grapes-same-grapes.Rd           |   2 +-
 man/grapes-termin-grapes.Rd         |   2 +-
 man/linearReg.R2stat.Rd             |   6 +-
 man/lmBF.Rd                         |   9 ++-
 man/logMeanExpLogs.Rd               |   2 +-
 man/meta.ttestBF.Rd                 |   2 +-
 man/model-classes.Rd                |   2 +-
 man/model.matrix-methods.Rd         |   2 +-
 man/nWayAOV.Rd                      |   2 +-
 man/newPriorOdds.Rd                 |   2 +-
 man/oneWayAOV.Fstat.Rd              |   6 +-
 man/options-BayesFactor.Rd          |   3 +-
 man/plot.BFBayesFactor.Rd           |   2 +-
 man/plot.BFBayesFactorTop.Rd        |   2 +-
 man/posterior-methods.Rd            |   2 +-
 man/priorLogodds-method.Rd          |   2 +-
 man/priorOdds-method.Rd             |   2 +-
 man/proportionBF.Rd                 |   2 +-
 man/puzzles.Rd                      |   2 +-
 man/raceDolls.Rd                    |   2 +-
 man/recompute-methods.Rd            |   2 +-
 man/regressionBF.Rd                 |   2 +-
 man/ttest.tstat.Rd                  |   6 +-
 man/ttestBF.Rd                      |   4 +-
 src/RcppExports.cpp                 |  13 +++
 src/dinvgamma.cpp                   |   6 ++
 vignettes/manual.Rmd                |  25 +++++-
 79 files changed, 680 insertions(+), 316 deletions(-)

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