[getfem] 02/12: Merge tag 'upstream/5.0'
Anton Gladky
gladk at moszumanska.debian.org
Sun Apr 17 09:05:15 UTC 2016
This is an automated email from the git hooks/post-receive script.
gladk pushed a commit to branch master
in repository getfem.
commit d9117464ef8faf00d24b9528a5c159fa2a02cf6f
Merge: c0a2989 01f93d9
Author: Anton Gladky <gladk at debian.org>
Date: Sat Apr 16 23:31:18 2016 +0200
Merge tag 'upstream/5.0'
Upstream version 5.0
AUTHORS | 19 +-
BUGS | 7 -
COPYING | 2 +-
INSTALL | 4 +-
Makefile.am | 5 +-
Makefile.in | 7 +-
bin/Makefile.am | 2 +-
bin/Makefile.in | 3 +-
bin/ansys2getfem_mesh | 192 +
bin/createmp | 6 +-
bin/extract_doc | 88 +-
bin/fig2eps | 76 +
bin/mesh_matlab_to_getfem | 62 +
bin/split_cmdref | 91 +
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configure | 276 +-
configure.ac | 152 +-
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contrib/crack_plate/crack_bilaplacian_tools.cc | 20 +-
contrib/crack_plate/crack_mindlin.cc | 162 +-
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interface/tests/python/Makefile.in | 45 +-
interface/tests/python/check_global_functions.py | 45 +-
interface/tests/python/check_levelset.py | 8 +-
.../tests/python/demo_Mindlin_Reissner_plate.py | 97 +
interface/tests/python/demo_crack.py | 6 +-
interface/tests/python/demo_plasticity.py | 71 +-
interface/tests/python/demo_plate.py | 80 +-
interface/tests/python/demo_step_by_step.py | 2 +-
interface/tests/python/demo_stokes_3D_tank.py | 6 +-
interface/tests/python/demo_stokes_3D_tank_draw.py | 2 +-
.../demo_thermo_elasticity_electrical_coupling.py | 231 +
interface/tests/python/demo_tripod.py | 119 +-
interface/tests/python/demo_wave_equation.py | 105 +
interface/tests/python/demo_wheel_contact.py | 168 +
interface/tests/python/getfem_tvtk.py | 4 +-
ltmain.sh | 4 +-
m4/Makefile.in | 1 -
src/Makefile.am | 18 +-
src/Makefile.in | 54 +-
src/bgeot_convex_ref.cc | 14 +-
src/bgeot_convex_ref_simplexified.cc | 14 +-
src/bgeot_convex_structure.cc | 14 +-
src/bgeot_ftool.cc | 14 +-
src/bgeot_geometric_trans.cc | 16 +-
src/bgeot_geotrans_inv.cc | 20 +-
src/bgeot_imbricated_box.cc | 231 -
src/bgeot_kdtree.cc | 14 +-
src/bgeot_mesh_structure.cc | 301 +-
src/bgeot_node_tab.cc | 18 +-
src/bgeot_poly.cc | 16 +-
src/bgeot_poly_composite.cc | 69 +-
src/bgeot_rtree.cc | 14 +-
src/bgeot_small_vector.cc | 14 +-
src/bgeot_sparse_tensors.cc | 14 +-
src/dal_backtrace.cc | 14 +-
src/dal_bit_vector.cc | 26 +-
src/dal_singleton.cc | 28 +-
src/dal_static_stored_objects.cc | 49 +-
src/getfem/bgeot_comma_init.h | 16 +-
src/getfem/bgeot_config.h | 20 +-
src/getfem/bgeot_convex.h | 16 +-
src/getfem/bgeot_convex_ref.h | 16 +-
src/getfem/bgeot_convex_structure.h | 16 +-
src/getfem/bgeot_ftool.h | 16 +-
src/getfem/bgeot_geometric_trans.h | 18 +-
src/getfem/bgeot_geotrans_inv.h | 18 +-
src/getfem/bgeot_imbricated_box.h | 63 -
src/getfem/bgeot_kdtree.h | 18 +-
src/getfem/bgeot_mesh.h | 16 +-
src/getfem/bgeot_mesh_structure.h | 108 +-
src/getfem/bgeot_node_tab.h | 18 +-
src/getfem/bgeot_permutations.h | 16 +-
src/getfem/bgeot_poly.h | 20 +-
src/getfem/bgeot_poly_composite.h | 36 +-
src/getfem/bgeot_rtree.h | 18 +-
src/getfem/bgeot_small_vector.h | 38 +-
src/getfem/bgeot_sparse_tensors.h | 16 +-
src/getfem/bgeot_tensor.h | 311 +-
src/getfem/bgeot_vector.h | 72 -
src/getfem/dal_backtrace.h | 16 +-
src/getfem/dal_basic.h | 16 +-
src/getfem/dal_bit_vector.h | 117 +-
src/getfem/dal_config.h | 16 +-
src/getfem/dal_naming_system.h | 16 +-
src/getfem/dal_shared_ptr.h | 16 +-
src/getfem/dal_singleton.h | 50 +-
src/getfem/dal_static_stored_objects.h | 50 +-
src/getfem/dal_tas.h | 16 +-
src/getfem/dal_tree_sorted.h | 16 +-
src/getfem/getfem_Coulomb_friction.h | 438 --
src/getfem/getfem_Navier_Stokes.h | 109 +-
src/getfem/getfem_arch_config.h | 19 +-
src/getfem/getfem_assembling.h | 16 +-
src/getfem/getfem_assembling_tensors.h | 16 +-
src/getfem/getfem_config.h | 47 +-
src/getfem/getfem_contact_and_friction_common.h | 28 +-
src/getfem/getfem_contact_and_friction_integral.h | 83 +-
.../getfem_contact_and_friction_large_sliding.h | 18 +-
src/getfem/getfem_contact_and_friction_nodal.h | 22 +-
src/getfem/getfem_context.h | 18 +-
src/getfem/getfem_continuation.h | 1855 +++---
src/getfem/getfem_convect.h | 18 +-
src/getfem/getfem_crack_sif.h | 16 +-
src/getfem/getfem_deformable_mesh.h | 316 +-
src/getfem/getfem_derivatives.h | 21 +-
src/getfem/getfem_error_estimate.h | 17 +-
src/getfem/getfem_export.h | 27 +-
src/getfem/getfem_external_data_fem.h | 85 -
src/getfem/getfem_fem.h | 138 +-
src/getfem/getfem_fem_level_set.h | 16 +-
src/getfem/getfem_fourth_order.h | 414 +-
src/getfem/getfem_gauss_lobatto_fem_coef.h | 744 ---
src/getfem/getfem_generic_assembly.h | 296 +-
src/getfem/getfem_im_data.h | 724 +--
src/getfem/getfem_im_list.h | 6055 ++++++++++----------
src/getfem/getfem_import.h | 54 +-
src/getfem/getfem_integration.h | 16 +-
src/getfem/getfem_inter_element.h | 16 +-
src/getfem/getfem_interpolated_fem.h | 16 +-
src/getfem/getfem_interpolation.h | 32 +-
src/getfem/getfem_level_set.h | 16 +-
src/getfem/getfem_level_set_contact.h | 1621 +++---
src/getfem/getfem_linearized_plates.h | 1191 +---
src/getfem/getfem_mat_elem.h | 18 +-
src/getfem/getfem_mat_elem_type.h | 16 +-
src/getfem/getfem_mesh.h | 219 +-
src/getfem/getfem_mesh_fem.h | 25 +-
src/getfem/getfem_mesh_fem_global_function.h | 33 +-
src/getfem/getfem_mesh_fem_level_set.h | 16 +-
src/getfem/getfem_mesh_fem_product.h | 16 +-
src/getfem/getfem_mesh_fem_sum.h | 16 +-
src/getfem/getfem_mesh_im.h | 83 +-
src/getfem/getfem_mesh_im_level_set.h | 16 +-
src/getfem/getfem_mesh_level_set.h | 16 +-
src/getfem/getfem_mesh_region.h | 87 +-
src/getfem/getfem_mesh_slice.h | 112 +-
src/getfem/getfem_mesh_slicers.h | 102 +-
src/getfem/getfem_mesher.h | 20 +-
src/getfem/getfem_model_solvers.h | 591 +-
src/getfem/getfem_modeling.h | 2477 --------
src/getfem/getfem_models.h | 1143 ++--
src/getfem/getfem_nonlinear_elasticity.h | 283 +-
src/getfem/getfem_norm.h | 192 -
src/getfem/getfem_omp.h | 707 +--
src/getfem/getfem_partial_mesh_fem.h | 19 +-
src/getfem/getfem_plasticity.h | 587 +-
src/getfem/getfem_projected_fem.h | 16 +-
src/getfem/getfem_regular_meshes.h | 38 +-
src/getfem/getfem_superlu.h | 16 +-
src/getfem/getfem_torus.h | 281 +-
src/getfem_assembling_tensors.cc | 32 +-
src/getfem_boost/noncopyable.hpp | 9 +-
src/getfem_contact_and_friction_common.cc | 166 +-
src/getfem_contact_and_friction_integral.cc | 2252 +-------
src/getfem_contact_and_friction_large_sliding.cc | 282 +-
src/getfem_contact_and_friction_nodal.cc | 128 +-
src/getfem_context.cc | 23 +-
src/getfem_continuation.cc | 141 +
src/getfem_deformable_mesh.cc | 42 -
src/getfem_error_estimate.cc | 225 +-
src/getfem_export.cc | 14 +-
src/getfem_fem.cc | 1163 +++-
src/getfem_fem_composite.cc | 14 +-
src/getfem_fem_level_set.cc | 18 +-
src/getfem_fourth_order.cc | 63 +-
src/getfem_generic_assembly.cc | 5027 ++++++++++------
src/getfem_im_data.cc | 420 +-
src/getfem_import.cc | 536 +-
src/getfem_integration.cc | 14 +-
src/getfem_integration_composite.cc | 14 +-
src/getfem_inter_element.cc | 120 +-
src/getfem_interpolated_fem.cc | 306 +-
src/getfem_interpolation.cc | 14 +-
src/getfem_level_set.cc | 14 +-
src/getfem_level_set_contact.cc | 1635 +++---
src/getfem_linearized_plates.cc | 306 +
src/getfem_mat_elem.cc | 33 +-
src/getfem_mat_elem_type.cc | 6 +-
src/getfem_mesh.cc | 649 ++-
src/getfem_mesh_fem.cc | 21 +-
src/getfem_mesh_fem_global_function.cc | 201 +-
src/getfem_mesh_fem_level_set.cc | 14 +-
src/getfem_mesh_fem_product.cc | 14 +-
src/getfem_mesh_fem_sum.cc | 204 +-
src/getfem_mesh_im.cc | 16 +-
src/getfem_mesh_im_level_set.cc | 14 +-
src/getfem_mesh_level_set.cc | 18 +-
src/getfem_mesh_region.cc | 86 +-
src/getfem_mesh_slice.cc | 14 +-
src/getfem_mesh_slicers.cc | 452 +-
src/getfem_mesher.cc | 17 +-
src/getfem_model_solvers.cc | 125 +-
src/getfem_modeling.cc | 99 -
src/getfem_models.cc | 5285 +++++++++--------
src/getfem_nonlinear_elasticity.cc | 100 +-
src/getfem_omp.cc | 259 +-
src/getfem_partial_mesh_fem.cc | 30 +-
src/getfem_plasticity.cc | 400 +-
src/getfem_projected_fem.cc | 9 +-
src/getfem_regular_meshes.cc | 349 +-
src/getfem_superlu.cc | 14 +-
src/getfem_torus.cc | 850 +--
src/gmm/gmm.h | 16 +-
src/gmm/gmm_MUMPS_interface.h | 154 +-
src/gmm/gmm_algobase.h | 16 +-
src/gmm/gmm_blas.h | 47 +-
src/gmm/gmm_blas_interface.h | 16 +-
src/gmm/gmm_condition_number.h | 16 +-
src/gmm/gmm_conjugated.h | 16 +-
src/gmm/gmm_def.h | 16 +-
src/gmm/gmm_dense_Householder.h | 90 +-
src/gmm/gmm_dense_lu.h | 16 +-
src/gmm/gmm_dense_matrix_functions.h | 302 +
src/gmm/gmm_dense_qr.h | 352 +-
src/gmm/gmm_dense_sylvester.h | 16 +-
src/gmm/gmm_domain_decomp.h | 16 +-
src/gmm/gmm_except.h | 33 +-
src/gmm/gmm_inoutput.h | 16 +-
src/gmm/gmm_interface.h | 16 +-
src/gmm/gmm_interface_bgeot.h | 16 +-
src/gmm/gmm_iter.h | 41 +-
src/gmm/gmm_iter_solvers.h | 16 +-
src/gmm/gmm_kernel.h | 16 +-
src/gmm/gmm_lapack_interface.h | 296 +-
src/gmm/gmm_least_squares_cg.h | 16 +-
src/gmm/gmm_matrix.h | 16 +-
src/gmm/gmm_modified_gram_schmidt.h | 16 +-
src/gmm/gmm_opt.h | 16 +-
src/gmm/gmm_precond.h | 16 +-
src/gmm/gmm_precond_diagonal.h | 16 +-
src/gmm/gmm_precond_ildlt.h | 16 +-
src/gmm/gmm_precond_ildltt.h | 16 +-
src/gmm/gmm_precond_ilu.h | 16 +-
src/gmm/gmm_precond_ilut.h | 16 +-
src/gmm/gmm_precond_ilutp.h | 16 +-
src/gmm/gmm_precond_mr_approx_inverse.h | 16 +-
src/gmm/gmm_range_basis.h | 19 +-
src/gmm/gmm_real_part.h | 16 +-
src/gmm/gmm_ref.h | 16 +-
src/gmm/gmm_scaled.h | 16 +-
src/gmm/gmm_solver_Schwarz_additive.h | 16 +-
src/gmm/gmm_solver_bfgs.h | 16 +-
src/gmm/gmm_solver_bicgstab.h | 16 +-
src/gmm/gmm_solver_cg.h | 16 +-
src/gmm/gmm_solver_constrained_cg.h | 16 +-
src/gmm/gmm_solver_gmres.h | 16 +-
src/gmm/gmm_solver_idgmres.h | 16 +-
src/gmm/gmm_solver_qmr.h | 16 +-
src/gmm/gmm_std.h | 50 +-
src/gmm/gmm_sub_index.h | 16 +-
src/gmm/gmm_sub_matrix.h | 16 +-
src/gmm/gmm_sub_vector.h | 22 +-
src/gmm/gmm_superlu_interface.h | 16 +-
src/gmm/gmm_transposed.h | 16 +-
src/gmm/gmm_tri_solve.h | 16 +-
src/gmm/gmm_vector.h | 18 +-
src/gmm/gmm_vector_to_matrix.h | 16 +-
superlu/Makefile.in | 1 -
superlu/slu_cdefs.h | 12 +-
superlu/slu_sdefs.h | 12 +-
superlu/slu_zdefs.h | 12 +-
tests-2.0/Makefile.am | 156 -
tests-2.0/Makefile.in | 1592 -----
tests-2.0/bilaplacian.cc | 404 --
tests-2.0/bilaplacian.param | 74 -
tests-2.0/bilaplacian.pl | 81 -
tests-2.0/dynamic_array.cc | 266 -
tests-2.0/dynamic_array.pl | 33 -
tests-2.0/dynamic_friction.cc | 776 ---
tests-2.0/dynamic_friction.param | 97 -
tests-2.0/dynamic_friction.pl | 81 -
tests-2.0/dynamic_tas.cc | 62 -
tests-2.0/dynamic_tas.pl | 32 -
tests-2.0/elastostatic.cc | 545 --
tests-2.0/elastostatic.param | 111 -
tests-2.0/elastostatic.pl | 101 -
tests-2.0/geo_trans_inv.cc | 236 -
tests-2.0/geo_trans_inv.param | 17 -
tests-2.0/geo_trans_inv.pl | 50 -
tests-2.0/helmholtz.cc | 246 -
tests-2.0/integration.cc | 472 --
tests-2.0/integration.pl | 31 -
tests-2.0/laplacian.cc | 336 --
tests-2.0/laplacian.param | 69 -
tests-2.0/laplacian.pl | 121 -
tests-2.0/nonlinear_elastostatic.cc | 531 --
tests-2.0/nonlinear_elastostatic.param | 74 -
tests-2.0/nonlinear_elastostatic.pl | 74 -
tests-2.0/plasticity.cc | 305 -
tests-2.0/plasticity.pl | 66 -
tests-2.0/plate.cc | 597 --
tests-2.0/plate.param | 85 -
tests-2.0/plate.pl | 67 -
tests-2.0/poly.cc | 192 -
tests-2.0/poly.pl | 31 -
tests-2.0/schwarz_additive.cc | 313 -
tests-2.0/schwarz_additive.param | 33 -
tests-2.0/schwarz_additive.pl | 67 -
tests-2.0/stokes.cc | 243 -
tests-2.0/stokes.param | 55 -
tests-2.0/stokes.pl | 60 -
tests-2.0/test_assembly.cc | 1884 ------
tests-2.0/test_assembly.pl | 50 -
tests-2.0/test_int_set.cc | 298 -
tests-2.0/test_int_set.pl | 30 -
tests-2.0/test_interpolated_fem.cc | 280 -
tests-2.0/test_interpolated_fem.param | 22 -
tests-2.0/test_interpolation.cc | 350 --
tests-2.0/test_interpolation.pl | 33 -
tests-2.0/test_kdtree.cc | 151 -
tests-2.0/test_kdtree.pl | 32 -
tests-2.0/test_mat_elem.cc | 372 --
tests-2.0/test_mat_elem.pl | 100 -
tests-2.0/test_mesh.cc | 356 --
tests-2.0/test_mesh.pl | 30 -
tests-2.0/test_mesh_im_level_set.cc | 183 -
tests-2.0/test_mesh_im_level_set.pl | 32 -
tests-2.0/test_norm.cc | 121 -
tests-2.0/test_norm.pl | 32 -
tests-2.0/test_rtree.cc | 244 -
tests-2.0/test_rtree.pl | 32 -
tests-2.0/test_slice.cc | 105 -
tests-2.0/test_slice.pl | 32 -
tests-2.0/test_small_vector.cc | 798 ---
tests-2.0/test_tree_sorted.cc | 129 -
tests/Makefile.am | 54 +-
tests/Makefile.in | 240 +-
tests/bilaplacian.cc | 325 +-
tests/bilaplacian.param | 8 +-
tests/bilaplacian.pl | 8 +-
tests/crack.cc | 61 +-
tests/crack.param | 6 -
tests/crack.pl | 10 +-
tests/cyl_slicer.cc | 16 +-
tests/cyl_slicer.pl | 6 +-
tests/dynamic_array.cc | 14 +-
tests/dynamic_array.pl | 6 +-
tests/dynamic_friction.cc | 909 ---
tests/dynamic_friction.net | 794 ---
tests/dynamic_friction.param | 98 -
tests/dynamic_friction.pl | 83 -
tests/dynamic_tas.cc | 14 +-
tests/dynamic_tas.pl | 6 +-
tests/elastostatic.cc | 22 +-
tests/elastostatic.pl | 8 +-
tests/geo_trans_inv.cc | 14 +-
tests/geo_trans_inv.pl | 6 +-
tests/gmm_torture01_lusolve.cc | 14 +-
tests/gmm_torture05_mult.cc | 14 +-
tests/gmm_torture06_mat_mult.cc | 16 +-
tests/gmm_torture10_qr.cc | 14 +-
tests/gmm_torture15_sub.cc | 14 +-
tests/gmm_torture20_iterative_solvers.cc | 14 +-
tests/heat_equation.cc | 118 +-
tests/heat_equation.param | 5 -
tests/heat_equation.pl | 10 +-
tests/helmholtz.cc | 57 +-
tests/helmholtz.pl | 6 +-
tests/integration.cc | 15 +-
tests/integration.pl | 6 +-
tests/laplacian.cc | 18 +-
tests/laplacian.pl | 8 +-
tests/laplacian_with_bricks.cc | 19 +-
tests/laplacian_with_bricks.pl | 8 +-
tests/make_gmm_test.pl | 6 +-
tests/nonlinear_elastostatic.cc | 77 +-
tests/nonlinear_elastostatic.param | 10 +-
tests/nonlinear_elastostatic.pl | 6 +-
tests/nonlinear_membrane.cc | 156 +-
tests/nonlinear_membrane.param | 2 +-
tests/nonlinear_membrane.pl | 6 +-
tests/plasticity.cc | 349 +-
tests/plasticity.pl | 6 +-
tests/plasticity_old_brick.cc | 300 -
tests/plasticity_old_brick.param | 87 -
tests/plasticity_old_brick.pl | 66 -
tests/plate.cc | 228 +-
tests/plate.param | 27 +-
tests/plate.pl | 6 +-
tests/poly.cc | 14 +-
tests/poly.pl | 6 +-
tests/schwarz_additive.cc | 15 +-
tests/schwarz_additive.pl | 8 +-
tests/stokes.cc | 22 +-
tests/stokes.pl | 6 +-
tests/test_assembly.cc | 102 +-
tests/test_assembly.pl | 6 +-
tests/test_continuation.cc | 98 +-
tests/test_continuation.param | 8 +-
tests/{helmholtz.pl => test_continuation.pl} | 58 +-
tests/test_gmm_matrix_functions.cc | 112 +
.../test_gmm_matrix_functions.pl | 15 +-
tests/test_int_set.cc | 14 +-
tests/test_int_set.pl | 6 +-
tests/test_interpolated_fem.cc | 14 +-
tests/test_interpolated_fem.pl | 6 +-
tests/test_interpolation.cc | 22 +-
tests/test_interpolation.pl | 6 +-
tests/test_kdtree.cc | 14 +-
tests/test_kdtree.pl | 6 +-
tests/test_large_sliding_contact.cc | 449 --
tests/test_large_sliding_contact.param | 40 -
tests/test_large_sliding_contact.pl | 67 -
tests/test_mat_elem.cc | 14 +-
tests/test_mat_elem.pl | 6 +-
tests/test_mesh.cc | 14 +-
tests/test_mesh.pl | 6 +-
tests/test_mesh_generation.cc | 18 +-
.../test_mesh_generation.pl | 9 +-
tests/test_mesh_im_level_set.cc | 16 +-
tests/test_mesh_im_level_set.pl | 6 +-
tests/test_norm.cc | 114 -
tests/test_norm.pl | 32 -
tests/test_range_basis.cc | 16 +-
tests/test_range_basis.pl | 8 +-
tests/test_rtree.cc | 14 +-
tests/test_rtree.pl | 6 +-
tests/test_slice.cc | 14 +-
tests/test_slice.pl | 6 +-
tests/test_small_vector.cc | 14 +-
tests/test_small_vector.pl | 6 +-
tests/test_tree_sorted.cc | 14 +-
tests/test_tree_sorted.pl | 6 +-
tests/thermo_elasticity_electrical_coupling.cc | 299 +
tests/thermo_elasticity_electrical_coupling.param | 21 +
.../thermo_elasticity_electrical_coupling.pl | 56 +-
tests/wave_equation.cc | 24 +-
tests/wave_equation.pl | 8 +-
808 files changed, 37106 insertions(+), 87165 deletions(-)
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