[r-cran-mcmcpack] 12/90: Imported Debian patch 0.7-1-1
Andreas Tille
tille at debian.org
Fri Dec 16 09:07:34 UTC 2016
This is an automated email from the git hooks/post-receive script.
tille pushed a commit to branch master
in repository r-cran-mcmcpack.
commit 08a30fd10d098bbed337d564ce35fbdbc9b441a3
Merge: 14a3541 c5b5ece
Author: Chris Lawrence <lawrencc at debian.org>
Date: Sun Jan 29 22:01:22 2006 -0500
Imported Debian patch 0.7-1-1
DESCRIPTION | 10 +-
HISTORY | 32 ++
INDEX | 15 +
NAMESPACE | 14 +-
R/BayesFactors.R | 278 ++++++++++++
R/MCMCSVDreg.R | 174 ++++++++
R/MCMCdynamicEI.R | 2 +-
R/MCMCfactanal.R | 6 +-
R/MCMChierEI.R | 4 +-
R/MCMCirt1d.R | 35 +-
R/MCMCirtKdRob.R | 413 +++++++++++++++++
R/MCMClogit.R | 70 ++-
R/MCMCmixfactanal.R | 4 +-
R/MCMCmnl.R | 11 +-
R/MCMCoprobit.R | 6 +-
R/MCMCordfactanal.R | 6 +-
R/MCMCpanel.R | 2 +-
R/MCMCpoisson.R | 47 +-
R/MCMCprobit.R | 50 ++-
R/MCMCregress.R | 86 +++-
R/MCMCtobit.R | 6 +-
R/MCmodels.R | 109 +++++
R/automate.R | 73 ++-
R/distn.R | 8 +-
R/hidden.R | 82 +++-
R/procrust.R | 64 +++
R/utility.R | 4 +-
debian/changelog | 9 +
debian/control | 14 +-
man/BayesFactor.Rd | 74 +++
man/MCMCSVDreg.Rd | 161 +++++++
man/MCMCirt1d.Rd | 20 +-
man/MCMCirtKdRob.Rd | 358 +++++++++++++++
man/MCMClogit.Rd | 8 +-
man/MCMCpoisson.Rd | 9 +-
man/MCMCprobit.Rd | 10 +-
man/MCMCregress.Rd | 20 +-
man/MCMCtobit.Rd | 4 +-
man/MCbinomialbeta.Rd | 60 +++
man/MCmultinomdirichlet.Rd | 56 +++
man/MCnormalnormal.Rd | 62 +++
man/MCpoissongamma.Rd | 60 +++
man/PostProbMod.Rd | 66 +++
man/procrust.Rd | 51 +++
man/xpnd.Rd | 11 +-
src/MCMCSVDreg.cc | 235 ++++++++++
src/MCMCfcds.cc | 6 +-
src/MCMCirt1d.cc | 37 +-
src/MCMCirtKdRob.cc | 1062 ++++++++++++++++++++++++++++++++++++++++++++
src/MCMCregress.cc | 78 +++-
src/Makevars | 1 -
src/Makevars.in | 1 -
52 files changed, 3919 insertions(+), 165 deletions(-)
diff --cc debian/changelog
index f79c9d1,0000000..5b89fe6
mode 100644,000000..100644
--- a/debian/changelog
+++ b/debian/changelog
@@@ -1,137 -1,0 +1,146 @@@
++mcmcpack (0.7-1-1) unstable; urgency=low
++
++ * New upstream release.
++ * Revise description to omit discussion of "upcoming" models that don't
++ seem to be upcoming; add suggestions of bayesm, eco, and mnp to fill
++ in some of the gaps.
++
++ -- Chris Lawrence <lawrencc at debian.org> Sun, 29 Jan 2006 22:01:22 -0500
++
+mcmcpack (0.6-6-1) unstable; urgency=low
+
+ * New upstream release.
+
+ -- Chris Lawrence <lawrencc at debian.org> Thu, 8 Dec 2005 08:59:17 -0500
+
+mcmcpack (0.6-5-2) unstable; urgency=low
+
+ * Fix FTBFS with gcc 4.0.2-3 and later. (Closes: #336281)
+
+ -- Chris Lawrence <lawrencc at debian.org> Sat, 29 Oct 2005 23:40:09 -0400
+
+mcmcpack (0.6-5-1) unstable; urgency=low
+
+ * New upstream release.
+
+ -- Chris Lawrence <lawrencc at debian.org> Thu, 30 Jun 2005 16:03:34 -0500
+
+mcmcpack (0.6-4-1) unstable; urgency=low
+
+ * New upstream release.
+
+ -- Chris Lawrence <lawrencc at debian.org> Sat, 2 Apr 2005 23:07:43 -0600
+
+mcmcpack (0.6-1-1) unstable; urgency=low
+
+ * New upstream release.
+
+ -- Chris Lawrence <lawrencc at debian.org> Thu, 3 Mar 2005 19:01:23 -0600
+
+mcmcpack (0.5-2-4) unstable; urgency=low
+
+ * Really fix FTBFS on autobuilders.
+
+ -- Chris Lawrence <lawrencc at debian.org> Mon, 11 Oct 2004 10:56:34 -0500
+
+mcmcpack (0.5-2-3) unstable; urgency=low
+
+ * Fix FTBFS on autobuilders.
+
+ -- Chris Lawrence <lawrencc at debian.org> Sat, 9 Oct 2004 21:25:59 -0500
+
+mcmcpack (0.5-2-2) unstable; urgency=low
+
+ * Rebuild for R 2.0.0.
+
+ -- Chris Lawrence <lawrencc at debian.org> Fri, 8 Oct 2004 00:24:03 -0500
+
+mcmcpack (0.5-2-1) unstable; urgency=low
+
+ * New upstream release. Kudos to Andrew, Kevin, and Pierre L'Ecuyer for
+ their quick response to license issues with 0.5-1.
+ * Now require r-cran-coda (>> 0.8).
+ * Include HISTORY file as upstream changelog.
+
+ -- Chris Lawrence <lawrencc at debian.org> Tue, 17 Aug 2004 21:38:55 -0500
+
+mcmcpack (0.4-8-2) unstable; urgency=low
+
+ * Update dependencies for r-recommended package split.
+
+ -- Chris Lawrence <lawrencc at debian.org> Mon, 3 May 2004 14:15:55 -0500
+
+mcmcpack (0.4-8-1) unstable; urgency=low
+
+ * New upstream release.
+
+ -- Chris Lawrence <lawrencc at debian.org> Tue, 17 Feb 2004 23:35:33 -0600
+
+mcmcpack (0.4-7-1) unstable; urgency=low
+
+ * New upstream release.
+ * Update control file description for new upstream URL.
+
+ -- Chris Lawrence <lawrencc at debian.org> Thu, 5 Feb 2004 16:50:13 -0600
+
+mcmcpack (0.4-6-1) unstable; urgency=low
+
+ * New upstream release
+ + Fixed a bug in rnoncenhypergeom()
+
+ -- Chris Lawrence <lawrencc at debian.org> Fri, 5 Dec 2003 10:33:51 -0600
+
+mcmcpack (0.4-5-1) unstable; urgency=low
+
+ * New upstream release.
+
+ -- Chris Lawrence <lawrencc at debian.org> Mon, 17 Nov 2003 13:17:39 -0600
+
+mcmcpack (0.4-3-1) unstable; urgency=low
+
+ * New upstream release.
+
+ -- Chris Lawrence <lawrencc at debian.org> Mon, 13 Oct 2003 08:19:13 -0500
+
+mcmcpack (0.4-2-1) unstable; urgency=low
+
+ * New upstream release.
+ * Revised packaging to be more compatible with new upstream versions.
+
+ -- Chris Lawrence <lawrencc at debian.org> Sat, 9 Aug 2003 22:44:39 -0500
+
+mcmcpack (0.4-1-1) unstable; urgency=low
+
+ * The "my days of being ABD are close to being over" release.
+ * New upstream release.
+ * New features:
+ + Metric and ordinal factor analysis models.
+ + k-dimensional item response theory model.
+ + A few new density and random draw functions.
+ * Install package to /usr/lib/R/site-library.
+ * Updated to standards-version 3.5.10; no substantive changes.
+ * Add Daniel Pemstein to upstream authors.
+
+ -- Chris Lawrence <lawrencc at debian.org> Tue, 10 Jun 2003 14:11:07 -0500
+
+mcmcpack (0.3-11-3) unstable; urgency=low
+
+ * Remove build hack now that R 1.7.0 has been released incorporating the
+ needed fix.
+ * Depend on r-recommended and r-base-core; remove r-base dependency.
+
+ -- Chris Lawrence <lawrencc at debian.org> Mon, 21 Apr 2003 11:33:45 -0500
+
+mcmcpack (0.3-11-2) unstable; urgency=medium
+
+ * Depend on r-cran-coda. (Closes: #187071)
+ * Note in the description that other samplers are used, in addition to
+ Gibbs sampling.
+
+ -- Chris Lawrence <lawrencc at debian.org> Sat, 5 Apr 2003 22:29:25 -0600
+
+mcmcpack (0.3-11-1) unstable; urgency=low
+
+ * Initial Release. (Closes: #169717)
+
+ -- Chris Lawrence <lawrencc at debian.org> Sun, 30 Mar 2003 08:10:27 -0600
diff --cc debian/control
index 679f2dd,0000000..3e3371c
mode 100644,000000..100644
--- a/debian/control
+++ b/debian/control
@@@ -1,38 -1,0 +1,38 @@@
+Source: mcmcpack
+Section: math
+Priority: optional
+Maintainer: Chris Lawrence <lawrencc at debian.org>
- Build-Depends: debhelper (>> 4.0.0), r-base-dev (>> 2.0.0), r-cran-coda (>= 0.8-3-2), r-cran-vr (>= 7.2.8-1)
- Standards-Version: 3.6.1
++Build-Depends: debhelper (>> 4.0.0), r-base-dev (>> 2.2.0), r-cran-coda (>= 0.10-3), r-cran-vr (>= 7.2.8-1)
++Standards-Version: 3.6.2
+
+Package: r-cran-mcmcpack
+Architecture: any
- Depends: r-base-core (>> 2.0.0), ${shlibs:Depends}, r-cran-coda (>= 0.8-3-2), r-cran-vr (>= 7.2.8-1)
++Depends: r-base-core (>> 2.2.0), ${shlibs:Depends}, r-cran-coda (>> 0.10-3), r-cran-vr (>= 7.2.8-1)
++Suggests: r-cran-bayesm, r-cran-eco, r-cran-mnp
+Description: GNU R routines for Markov chain Monte Carlo model estimation
+ This is a set of routines for GNU R that implement various
+ statistical and econometric models using Markov chain Monte Carlo
+ (MCMC) estimation, which allows "solving" models that would otherwise
+ be intractable with traditional techniques, particularly problems in
+ Bayesian statistics (where one or more "priors" are used as part of
+ the estimation procedure, instead of an assumption of ignorance about
+ the "true" point estimates), although MCMC can also be used to solve
+ frequentist statistical problems with uninformative priors. MCMC
+ techniques are also preferable over direct estimation in the presence
+ of missing data.
+ .
+ Currently implemented are a number of ecological inference (EI)
+ routines (for estimating individual-level attributes or behavior from
+ aggregate data, such as electoral returns or census results), as well
+ as models for traditional linear panel and cross-sectional data, some
+ visualization routines for EI diagnostics, two item-response theory
+ (or ideal-point estimation) models, metric, ordinal, and
+ mixed-response factor analysis, and models for Gaussian (linear) and
+ Poisson regression, logistic regression (or logit), and binary and
+ ordinal-response probit models.
+ .
- Additional models, including more EI routines (such as the model
- developed by Gary King in "A Solution to the Ecological Inference
- Problem"), a multinomial probit model, and a mixed-effects Gaussian
- model, are planned for future releases.
++ The suggested packages (r-cran-bayesm, -eco, and -mnp) contain
++ additional models that may also be useful for those interested in
++ this package.
+ .
+ Home Page: http://mcmcpack.wustl.edu/
diff --cc src/Makevars
index ae8cde5,174a0f5..024e5ff
--- a/src/Makevars
+++ b/src/Makevars
@@@ -1,2 -1,1 +1,1 @@@
-PKG_CXXFLAGS = -DSCYTHE_COMPILE_DIRECT -DSCYTHE_NO_RANGE -DHAVE_TRUNC
+PKG_CXXFLAGS = -DSCYTHE_COMPILE_DIRECT -DSCYTHE_NO_RANGE
-
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