[r-cran-mcmcpack] 25/90: Imported Debian patch 0.9-1-1
Andreas Tille
tille at debian.org
Fri Dec 16 09:07:36 UTC 2016
This is an automated email from the git hooks/post-receive script.
tille pushed a commit to branch master
in repository r-cran-mcmcpack.
commit 59b2a14eb3fad30701edd29a56053aedf530710d
Merge: 74454d7 3ecc122
Author: Chris Lawrence <lawrencc at debian.org>
Date: Mon Sep 3 15:39:59 2007 -0500
Imported Debian patch 0.9-1-1
DESCRIPTION | 10 +-
HISTORY | 6 +
LICENSE | 2 +-
NAMESPACE | 1 -
R/MCMCfactanal.R | 4 +-
R/MCMCirt1d.R | 2 +-
R/MCMCirtKdRob.R | 2 +-
R/MCMCmixfactanal.R | 2 +-
R/MCMCmnl.R | 3 +-
R/MCMCoprobit.R | 2 +-
R/MCMCordfactanal.R | 4 +-
R/MCMCpanel.R | 247 --
R/hidden.R | 2 +-
configure | 581 +--
debian/changelog | 6 +
debian/control | 4 +-
man/MCMCpanel.Rd | 158 -
src/MCMCSVDreg.cc | 200 +-
src/MCMCdistn.cc | 466 ---
src/MCMCdynamicEI.cc | 467 +--
src/MCMCfactanal.cc | 280 +-
src/MCMCfcds.cc | 400 ---
src/MCMCfcds.h | 457 ++-
src/MCMChierEI.cc | 563 ++-
src/MCMCirt1d.cc | 259 +-
src/MCMCirtKdRob.cc | 1006 +++---
src/MCMClogit.cc | 209 +-
src/MCMClogituserprior.cc | 221 +-
src/MCMCmetrop1R.cc | 252 +-
src/MCMCmixfactanal.cc | 590 +--
src/MCMCmnl.h | 74 +
src/MCMCmnlMH.cc | 199 +-
src/MCMCmnlslice.cc | 417 +--
src/MCMCoprobit.cc | 195 +-
src/MCMCordfactanal.cc | 397 +-
src/MCMCpanel.cc | 229 --
src/MCMCpoisson.cc | 180 +-
src/MCMCprobit.cc | 149 +-
src/MCMCprobitres.cc | 176 +-
src/MCMCregress.cc | 272 +-
src/MCMCrng.cc | 59 -
src/MCMCrng.h | 46 +-
src/MCMCtobit.cc | 169 +-
src/Makevars | 2 +-
src/Makevars.in | 2 +-
src/algorithm.h | 202 ++
src/datablock.h | 361 ++
src/defs.h | 261 ++
src/distributions.cc | 2055 -----------
src/distributions.h | 2601 ++++++++++++--
src/error.h | 362 +-
src/ide.cc | 534 ---
src/ide.h | 1797 +++++++++-
src/la.cc | 393 --
src/la.h | 1041 +++++-
src/lapack.h | 131 +
src/lecuyer.cc | 689 +---
src/lecuyer.h | 733 +++-
src/matrix.h | 6750 +++++++++++++++++++++++++----------
src/matrix_bidirectional_iterator.h | 474 +++
src/matrix_forward_iterator.h | 427 +++
src/matrix_iterator.h | 1842 ----------
src/matrix_random_access_iterator.h | 626 ++++
src/mersenne.cc | 125 -
src/mersenne.h | 227 +-
src/optimize.cc | 642 ----
src/optimize.h | 1012 +++++-
src/rng.cc | 1161 ------
src/rng.h | 1580 +++++++-
src/rtmvnorm.h | 266 ++
src/smath.cc | 625 ----
src/smath.h | 1123 ++++--
src/stat.cc | 431 ---
src/stat.h | 710 +++-
src/util.h | 74 -
75 files changed, 21713 insertions(+), 16514 deletions(-)
diff --cc configure
index 489066c,964e714..e836beb
--- a/configure
+++ b/configure
@@@ -3987,93 -3765,6 +3765,77 @@@ f
done
+{ echo "$as_me:$LINENO: checking for trunc in -lm" >&5
+echo $ECHO_N "checking for trunc in -lm... $ECHO_C" >&6; }
+if test "${ac_cv_lib_m_trunc+set}" = set; then
+ echo $ECHO_N "(cached) $ECHO_C" >&6
+else
+ ac_check_lib_save_LIBS=$LIBS
+LIBS="-lm $LIBS"
+cat >conftest.$ac_ext <<_ACEOF
+/* confdefs.h. */
+_ACEOF
+cat confdefs.h >>conftest.$ac_ext
+cat >>conftest.$ac_ext <<_ACEOF
+/* end confdefs.h. */
+
+/* Override any GCC internal prototype to avoid an error.
+ Use char because int might match the return type of a GCC
+ builtin and then its argument prototype would still apply. */
+#ifdef __cplusplus
+extern "C"
+#endif
+char trunc ();
+int
+main ()
+{
+return trunc ();
+ ;
+ return 0;
+}
+_ACEOF
+rm -f conftest.$ac_objext conftest$ac_exeext
+if { (ac_try="$ac_link"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
+ (eval "$ac_link") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
- { ac_try='test -z "$ac_c_werror_flag" || test ! -s conftest.err'
- { (case "(($ac_try" in
- *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
- *) ac_try_echo=$ac_try;;
- esac
- eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
- (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest$ac_exeext'
- { (case "(($ac_try" in
- *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
- *) ac_try_echo=$ac_try;;
- esac
- eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
- (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
++ (exit $ac_status); } && {
++ test -z "$ac_c_werror_flag" ||
++ test ! -s conftest.err
++ } && test -s conftest$ac_exeext &&
++ $as_test_x conftest$ac_exeext; then
+ ac_cv_lib_m_trunc=yes
+else
+ echo "$as_me: failed program was:" >&5
+sed 's/^/| /' conftest.$ac_ext >&5
+
+ ac_cv_lib_m_trunc=no
+fi
+
+rm -f core conftest.err conftest.$ac_objext conftest_ipa8_conftest.oo \
+ conftest$ac_exeext conftest.$ac_ext
+LIBS=$ac_check_lib_save_LIBS
+fi
+{ echo "$as_me:$LINENO: result: $ac_cv_lib_m_trunc" >&5
+echo "${ECHO_T}$ac_cv_lib_m_trunc" >&6; }
+if test $ac_cv_lib_m_trunc = yes; then
+ cat >>confdefs.h <<_ACEOF
+#define HAVE_LIBM 1
+_ACEOF
+
+ LIBS="-lm $LIBS"
+
+fi
+
+
for ac_func in trunc
do
as_ac_var=`echo "ac_cv_func_$ac_func" | $as_tr_sh`
diff --cc debian/changelog
index 82e9799,0000000..51877f3
mode 100644,000000..100644
--- a/debian/changelog
+++ b/debian/changelog
@@@ -1,183 -1,0 +1,189 @@@
++mcmcpack (0.9-1-1) unstable; urgency=low
++
++ * New upstream release
++
++ -- Chris Lawrence <lawrencc at debian.org> Mon, 03 Sep 2007 15:39:59 -0500
++
+mcmcpack (0.8-2-1) unstable; urgency=low
+
+ * New upstream release
+
+ -- Chris Lawrence <lawrencc at debian.org> Tue, 10 Jul 2007 17:27:59 -0500
+
+mcmcpack (0.8-1-1) unstable; urgency=low
+
+ * New upstream release
+
+ -- Chris Lawrence <lawrencc at debian.org> Sat, 20 Jan 2007 21:45:31 -0600
+
+mcmcpack (0.7-4-2) unstable; urgency=low
+
+ * Look for trunc() in -lm, to fix FTBFS on m68k (and possibly other
+ platforms?). (Closes: #389400)
+
+ -- Chris Lawrence <lawrencc at debian.org> Sun, 8 Oct 2006 18:21:07 -0500
+
+mcmcpack (0.7-4-1) unstable; urgency=low
+
+ * New upstream release.
+
+ -- Chris Lawrence <lawrencc at debian.org> Thu, 5 Oct 2006 02:12:06 -0500
+
+mcmcpack (0.7-3-1) unstable; urgency=low
+
+ * New upstream release.
+
+ -- Chris Lawrence <lawrencc at debian.org> Thu, 21 Sep 2006 21:30:32 -0500
+
+mcmcpack (0.7-2-1) unstable; urgency=low
+
+ * New upstream release.
+
+ -- Chris Lawrence <lawrencc at debian.org> Thu, 1 Jun 2006 16:10:06 -0400
+
+mcmcpack (0.7-1-1) unstable; urgency=low
+
+ * New upstream release.
+ * Revise description to omit discussion of "upcoming" models that don't
+ seem to be upcoming; add suggestions of bayesm, eco, and mnp to fill
+ in some of the gaps.
+
+ -- Chris Lawrence <lawrencc at debian.org> Sun, 29 Jan 2006 22:01:22 -0500
+
+mcmcpack (0.6-6-1) unstable; urgency=low
+
+ * New upstream release.
+
+ -- Chris Lawrence <lawrencc at debian.org> Thu, 8 Dec 2005 08:59:17 -0500
+
+mcmcpack (0.6-5-2) unstable; urgency=low
+
+ * Fix FTBFS with gcc 4.0.2-3 and later. (Closes: #336281)
+
+ -- Chris Lawrence <lawrencc at debian.org> Sat, 29 Oct 2005 23:40:09 -0400
+
+mcmcpack (0.6-5-1) unstable; urgency=low
+
+ * New upstream release.
+
+ -- Chris Lawrence <lawrencc at debian.org> Thu, 30 Jun 2005 16:03:34 -0500
+
+mcmcpack (0.6-4-1) unstable; urgency=low
+
+ * New upstream release.
+
+ -- Chris Lawrence <lawrencc at debian.org> Sat, 2 Apr 2005 23:07:43 -0600
+
+mcmcpack (0.6-1-1) unstable; urgency=low
+
+ * New upstream release.
+
+ -- Chris Lawrence <lawrencc at debian.org> Thu, 3 Mar 2005 19:01:23 -0600
+
+mcmcpack (0.5-2-4) unstable; urgency=low
+
+ * Really fix FTBFS on autobuilders.
+
+ -- Chris Lawrence <lawrencc at debian.org> Mon, 11 Oct 2004 10:56:34 -0500
+
+mcmcpack (0.5-2-3) unstable; urgency=low
+
+ * Fix FTBFS on autobuilders.
+
+ -- Chris Lawrence <lawrencc at debian.org> Sat, 9 Oct 2004 21:25:59 -0500
+
+mcmcpack (0.5-2-2) unstable; urgency=low
+
+ * Rebuild for R 2.0.0.
+
+ -- Chris Lawrence <lawrencc at debian.org> Fri, 8 Oct 2004 00:24:03 -0500
+
+mcmcpack (0.5-2-1) unstable; urgency=low
+
+ * New upstream release. Kudos to Andrew, Kevin, and Pierre L'Ecuyer for
+ their quick response to license issues with 0.5-1.
+ * Now require r-cran-coda (>> 0.8).
+ * Include HISTORY file as upstream changelog.
+
+ -- Chris Lawrence <lawrencc at debian.org> Tue, 17 Aug 2004 21:38:55 -0500
+
+mcmcpack (0.4-8-2) unstable; urgency=low
+
+ * Update dependencies for r-recommended package split.
+
+ -- Chris Lawrence <lawrencc at debian.org> Mon, 3 May 2004 14:15:55 -0500
+
+mcmcpack (0.4-8-1) unstable; urgency=low
+
+ * New upstream release.
+
+ -- Chris Lawrence <lawrencc at debian.org> Tue, 17 Feb 2004 23:35:33 -0600
+
+mcmcpack (0.4-7-1) unstable; urgency=low
+
+ * New upstream release.
+ * Update control file description for new upstream URL.
+
+ -- Chris Lawrence <lawrencc at debian.org> Thu, 5 Feb 2004 16:50:13 -0600
+
+mcmcpack (0.4-6-1) unstable; urgency=low
+
+ * New upstream release
+ + Fixed a bug in rnoncenhypergeom()
+
+ -- Chris Lawrence <lawrencc at debian.org> Fri, 5 Dec 2003 10:33:51 -0600
+
+mcmcpack (0.4-5-1) unstable; urgency=low
+
+ * New upstream release.
+
+ -- Chris Lawrence <lawrencc at debian.org> Mon, 17 Nov 2003 13:17:39 -0600
+
+mcmcpack (0.4-3-1) unstable; urgency=low
+
+ * New upstream release.
+
+ -- Chris Lawrence <lawrencc at debian.org> Mon, 13 Oct 2003 08:19:13 -0500
+
+mcmcpack (0.4-2-1) unstable; urgency=low
+
+ * New upstream release.
+ * Revised packaging to be more compatible with new upstream versions.
+
+ -- Chris Lawrence <lawrencc at debian.org> Sat, 9 Aug 2003 22:44:39 -0500
+
+mcmcpack (0.4-1-1) unstable; urgency=low
+
+ * The "my days of being ABD are close to being over" release.
+ * New upstream release.
+ * New features:
+ + Metric and ordinal factor analysis models.
+ + k-dimensional item response theory model.
+ + A few new density and random draw functions.
+ * Install package to /usr/lib/R/site-library.
+ * Updated to standards-version 3.5.10; no substantive changes.
+ * Add Daniel Pemstein to upstream authors.
+
+ -- Chris Lawrence <lawrencc at debian.org> Tue, 10 Jun 2003 14:11:07 -0500
+
+mcmcpack (0.3-11-3) unstable; urgency=low
+
+ * Remove build hack now that R 1.7.0 has been released incorporating the
+ needed fix.
+ * Depend on r-recommended and r-base-core; remove r-base dependency.
+
+ -- Chris Lawrence <lawrencc at debian.org> Mon, 21 Apr 2003 11:33:45 -0500
+
+mcmcpack (0.3-11-2) unstable; urgency=medium
+
+ * Depend on r-cran-coda. (Closes: #187071)
+ * Note in the description that other samplers are used, in addition to
+ Gibbs sampling.
+
+ -- Chris Lawrence <lawrencc at debian.org> Sat, 5 Apr 2003 22:29:25 -0600
+
+mcmcpack (0.3-11-1) unstable; urgency=low
+
+ * Initial Release. (Closes: #169717)
+
+ -- Chris Lawrence <lawrencc at debian.org> Sun, 30 Mar 2003 08:10:27 -0600
diff --cc debian/control
index 73d539f,0000000..9b98b9a
mode 100644,000000..100644
--- a/debian/control
+++ b/debian/control
@@@ -1,38 -1,0 +1,38 @@@
+Source: mcmcpack
+Section: math
+Priority: optional
+Maintainer: Chris Lawrence <lawrencc at debian.org>
- Build-Depends: debhelper (>> 4.0.0), r-base-dev (>> 2.2.0), r-cran-coda (>= 0.10-3), r-cran-vr (>= 7.2.8-1)
++Build-Depends: debhelper (>> 4.0.0), r-base-dev (>> 2.5.0), r-cran-coda (>= 0.11-3), r-cran-vr (>= 7.2.8-1)
+Standards-Version: 3.7.2
+
+Package: r-cran-mcmcpack
+Architecture: any
- Depends: r-base-core (>> 2.2.0), ${shlibs:Depends}, r-cran-coda (>> 0.10-3), r-cran-vr (>= 7.2.8-1)
++Depends: r-base-core (>> 2.5.0), ${shlibs:Depends}, r-cran-coda (>> 0.11-3), r-cran-vr (>= 7.2.8-1)
+Suggests: r-cran-bayesm, r-cran-eco, r-cran-mnp
+Description: GNU R routines for Markov chain Monte Carlo model estimation
+ This is a set of routines for GNU R that implement various
+ statistical and econometric models using Markov chain Monte Carlo
+ (MCMC) estimation, which allows "solving" models that would otherwise
+ be intractable with traditional techniques, particularly problems in
+ Bayesian statistics (where one or more "priors" are used as part of
+ the estimation procedure, instead of an assumption of ignorance about
+ the "true" point estimates), although MCMC can also be used to solve
+ frequentist statistical problems with uninformative priors. MCMC
+ techniques are also preferable over direct estimation in the presence
+ of missing data.
+ .
+ Currently implemented are a number of ecological inference (EI)
+ routines (for estimating individual-level attributes or behavior from
+ aggregate data, such as electoral returns or census results), as well
+ as models for traditional linear panel and cross-sectional data, some
+ visualization routines for EI diagnostics, two item-response theory
+ (or ideal-point estimation) models, metric, ordinal, and
+ mixed-response factor analysis, and models for Gaussian (linear) and
+ Poisson regression, logistic regression (or logit), and binary and
+ ordinal-response probit models.
+ .
+ The suggested packages (r-cran-bayesm, -eco, and -mnp) contain
+ additional models that may also be useful for those interested in
+ this package.
+ .
+ Home Page: http://mcmcpack.wustl.edu/
--
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