[r-cran-mcmcpack] 56/90: Imported Upstream version 1.0-11
Andreas Tille
tille at debian.org
Fri Dec 16 09:07:47 UTC 2016
This is an automated email from the git hooks/post-receive script.
tille pushed a commit to branch master
in repository r-cran-mcmcpack.
commit 4b327a0c8c9c898f43e684adf45c8856cd256294
Author: Andreas Tille <tille at debian.org>
Date: Fri Dec 16 08:07:20 2016 +0100
Imported Upstream version 1.0-11
---
DESCRIPTION | 8 ++++----
HISTORY | 4 ++++
R/MCMCbinaryChange.R | 0
R/tomog.R | 2 +-
data/PErisk.rda | Bin 4653 -> 1966 bytes
data/SupremeCourt.rda | Bin 3896 -> 471 bytes
inst/CITATION | 13 ++++++++-----
man/MCMCSVDreg.Rd | 7 ++++++-
man/MCMCbinaryChange.Rd | 10 ++++++++--
man/MCMCdynamicEI.Rd | 5 ++++-
man/MCMCdynamicIRT1d.Rd | 8 +++++++-
man/MCMCfactanal.Rd | 5 +++++
man/MCMChierEI.Rd | 5 +++++
man/MCMCirt1d.Rd | 5 +++++
man/MCMCirtHier1d.Rd | 5 +++++
man/MCMCirtKd.Rd | 5 +++++
man/MCMCirtKdHet.Rd | 4 ++--
man/MCMCirtKdRob.Rd | 5 +++++
man/MCMClogit.Rd | 4 ++++
man/MCMCmetrop1R.Rd | 5 +++++
man/MCMCmixfactanal.Rd | 13 +++++++++----
man/MCMCmnl.Rd | 7 ++++++-
man/MCMCoprobit.Rd | 5 +++++
man/MCMCoprobitChange.Rd | 7 ++++++-
man/MCMCordfactanal.Rd | 9 +++++++--
man/MCMCpoisson.Rd | 6 +++++-
man/MCMCpoissonChange.Rd | 15 ++++++++++-----
man/MCMCprobit.Rd | 9 +++++++--
man/MCMCprobitChange.Rd | 7 ++++++-
man/MCMCquantreg.Rd | 4 ++--
man/MCMCregress.Rd | 9 +++++++--
man/MCMCtobit.Rd | 5 +++++
32 files changed, 158 insertions(+), 38 deletions(-)
diff --git a/DESCRIPTION b/DESCRIPTION
index 09229dd..8599f39 100644
--- a/DESCRIPTION
+++ b/DESCRIPTION
@@ -1,6 +1,6 @@
Package: MCMCpack
-Version: 1.0-10
-Date: 2011-2-27
+Version: 1.0-11
+Date: 2011-4-26
Title: Markov chain Monte Carlo (MCMC) Package
Author: Andrew D. Martin, Kevin M. Quinn, and Jong Hee Park
Maintainer: Andrew D. Martin <admartin at wustl.edu>
@@ -18,6 +18,6 @@ Description: This package contains functions to perform Bayesian
License: GPL-2
SystemRequirements: gcc (>= 4.0)
URL: http://mcmcpack.wustl.edu
-Packaged: 2011-02-28 01:23:02 UTC; adm
+Packaged: 2011-04-26 14:48:33 UTC; adm
Repository: CRAN
-Date/Publication: 2011-02-28 09:27:53
+Date/Publication: 2011-04-26 15:12:35
diff --git a/HISTORY b/HISTORY
index 67eb6bd..f105cc2 100644
--- a/HISTORY
+++ b/HISTORY
@@ -2,6 +2,10 @@
// Changes and Bug Fixes
//
+1.0-10 to 1.0-11
+ * updated CITATION file in inst/ to coincide with JStatSoft publication
+ * added reference to JStatSoft in references
+
1.0-9 to 1.0-10
* added CITATION in inst/ to coincide with JStatSoft publication
* compressed two large data files (Senate and Nethvote)
diff --git a/R/MCMCbinaryChange.R b/R/MCMCbinaryChange.R
old mode 100755
new mode 100644
diff --git a/R/tomog.R b/R/tomog.R
index f7ee433..c794fa5 100644
--- a/R/tomog.R
+++ b/R/tomog.R
@@ -92,7 +92,7 @@
mar.orig <- (par.orig <- par(c("mar", "las", "mfrow")))$mar
on.exit(par(par.orig))
w <- (3 + mar.orig[2]) * par("csi") * 2.54
- layout(matrix(c(2,1), nc=2), widths=c(1,lcm(w)))
+ layout(matrix(c(2,1), ncol=2), widths=c(1,lcm(w)))
par(las=1)
mar <- mar.orig
mar[4] <- mar[2]
diff --git a/data/PErisk.rda b/data/PErisk.rda
index 7688d70..f272314 100644
Binary files a/data/PErisk.rda and b/data/PErisk.rda differ
diff --git a/data/SupremeCourt.rda b/data/SupremeCourt.rda
index 1f1d1e7..7866968 100644
Binary files a/data/SupremeCourt.rda and b/data/SupremeCourt.rda differ
diff --git a/inst/CITATION b/inst/CITATION
index 7a33165..309b7da 100644
--- a/inst/CITATION
+++ b/inst/CITATION
@@ -7,12 +7,15 @@ citEntry(entry = "Article",
as.person("Jong Hee Park")),
journal = "Journal of Statistical Software",
year = "2011",
- note = "Forthcoming",
- url = "http://www.jstatsoft.org/",
-
+ volume = {42},
+ number = {9},
+ pages = {1--21},
+ url = {"http://www.jstatsoft.org/v42/i09/"},
textVersion =
paste("Andrew D. Martin, Kevin M. Quinn, Jong Hee Park (2011).",
"MCMCpack: Markov Chain Monte Carlo in R.",
- "Journal of Statistical Software, Forthcoming.",
- "URL http://www.jstatsoft.org/.")
+ "Journal of Statistical Software. 42(9): 1-21.",
+ "URL http://www.jstatsoft.org/v42/i09/.")
)
+
+
diff --git a/man/MCMCSVDreg.Rd b/man/MCMCSVDreg.Rd
index 5b4e576..6e96604 100644
--- a/man/MCMCSVDreg.Rd
+++ b/man/MCMCSVDreg.Rd
@@ -140,7 +140,12 @@ MCMCSVDreg(formula, data=NULL, burnin = 1000, mcmc = 10000,
Gottardo, Raphael, and Adrian Raftery. 2004. ``Markov chain Monte
Carlo with mixtures of singular distributions.'' Statistics
Department, University of Washington, Technical Report 470.
-
+
+Andrew D. Martin, Kevin M. Quinn, and Jong Hee Park. 2011.
+ ``MCMCpack: Markov Chain Monte Carlo in R.'',
+ \emph{Journal of Statistical Software}. 42(9): 1-21.
+ \url{http://www.jstatsoft.org/v42/i09/}.
+
Daniel Pemstein, Kevin M. Quinn, and Andrew D. Martin. 2007.
\emph{Scythe Statistical Library 1.0.} \url{http://scythe.wustl.edu}.
diff --git a/man/MCMCbinaryChange.Rd b/man/MCMCbinaryChange.Rd
index ba2a180..24d5dfd 100644
--- a/man/MCMCbinaryChange.Rd
+++ b/man/MCMCbinaryChange.Rd
@@ -87,16 +87,22 @@
\author{Jong Hee Park, \email{jhp at uchicago.edu}, \url{http://home.uchicago.edu/~jhp/}.}
\references{
- Siddhartha Chib. 1995. "Marginal Likelihood from the Gibbs Output."
+ Siddhartha Chib. 1995. ``Marginal Likelihood from the Gibbs Output.''
\emph{Journal of the American Statistical Association}. 90:
1313-1321.
- Siddhartha Chib. 1998. "Estimation and comparison of multiple change-point models."
+ Siddhartha Chib. 1998. ``Estimation and comparison of multiple change-point models.''
\emph{Journal of Econometrics}. 86: 221-241.
+ Andrew D. Martin, Kevin M. Quinn, and Jong Hee Park. 2011.
+ ``MCMCpack: Markov Chain Monte Carlo in R.'',
+ \emph{Journal of Statistical Software}. 42(9): 1-21.
+ \url{http://www.jstatsoft.org/v42/i09/}.
+
Martyn Plummer, Nicky Best, Kate Cowles, and Karen Vines. 2002.
\emph{Output Analysis and Diagnostics for MCMC (CODA)}.
\url{http://www-fis.iarc.fr/coda/}.
+
}
\examples{
diff --git a/man/MCMCdynamicEI.Rd b/man/MCMCdynamicEI.Rd
index 04a9a39..b9f6e5e 100644
--- a/man/MCMCdynamicEI.Rd
+++ b/man/MCMCdynamicEI.Rd
@@ -139,7 +139,10 @@ Dependence." In \emph{Ecological Inference: New Methodological
Strategies}. Gary King, Ori Rosen, and Martin A. Tanner (eds.). New
York: Cambridge University Press.
-
+Andrew D. Martin, Kevin M. Quinn, and Jong Hee Park. 2011.
+ ``MCMCpack: Markov Chain Monte Carlo in R.'',
+ \emph{Journal of Statistical Software}. 42(9): 1-21.
+ \url{http://www.jstatsoft.org/v42/i09/}.
Radford Neal. 2003. ``Slice Sampling" (with discussion). \emph{Annals of
Statistics}, 31: 705-767.
diff --git a/man/MCMCdynamicIRT1d.Rd b/man/MCMCdynamicIRT1d.Rd
index fdda299..362912e 100644
--- a/man/MCMCdynamicIRT1d.Rd
+++ b/man/MCMCdynamicIRT1d.Rd
@@ -215,7 +215,13 @@ can be summarized by functions provided by the coda package. }
\references{ Andrew D. Martin and Kevin M. Quinn. 2002. "Dynamic Ideal
Point Estimation via Markov Chain Monte Carlo for the U.S. Supreme
-Court, 1953-1999." \emph{Political Analysis.} 10: 134-153.}
+Court, 1953-1999." \emph{Political Analysis.} 10: 134-153.
+
+Andrew D. Martin, Kevin M. Quinn, and Jong Hee Park. 2011.
+ ``MCMCpack: Markov Chain Monte Carlo in R.'',
+ \emph{Journal of Statistical Software}. 42(9): 1-21.
+ \url{http://www.jstatsoft.org/v42/i09/}.
+}
\author{Kevin M. Quinn }
diff --git a/man/MCMCfactanal.Rd b/man/MCMCfactanal.Rd
index 967ad91..2b215ba 100644
--- a/man/MCMCfactanal.Rd
+++ b/man/MCMCfactanal.Rd
@@ -157,6 +157,11 @@ MCMCfactanal(x, factors, lambda.constraints=list(),
}
\references{
+Andrew D. Martin, Kevin M. Quinn, and Jong Hee Park. 2011.
+ ``MCMCpack: Markov Chain Monte Carlo in R.'',
+ \emph{Journal of Statistical Software}. 42(9): 1-21.
+ \url{http://www.jstatsoft.org/v42/i09/}.
+
Daniel Pemstein, Kevin M. Quinn, and Andrew D. Martin. 2007.
\emph{Scythe Statistical Library 1.0.} \url{http://scythe.wustl.edu}.
diff --git a/man/MCMChierEI.Rd b/man/MCMChierEI.Rd
index dc1d04b..e8ca4cc 100644
--- a/man/MCMChierEI.Rd
+++ b/man/MCMChierEI.Rd
@@ -144,6 +144,11 @@ MCMChierEI(r0, r1, c0, c1, burnin=5000, mcmc=50000, thin=1,
Radford Neal. 2003. ``Slice Sampling" (with discussion). \emph{Annals of
Statistics}, 31: 705-767.
+
+ Andrew D. Martin, Kevin M. Quinn, and Jong Hee Park. 2011.
+ ``MCMCpack: Markov Chain Monte Carlo in R.'',
+ \emph{Journal of Statistical Software}. 42(9): 1-21.
+ \url{http://www.jstatsoft.org/v42/i09/}.
Daniel Pemstein, Kevin M. Quinn, and Andrew D. Martin. 2007.
\emph{Scythe Statistical Library 1.0.} \url{http://scythe.wustl.edu}.
diff --git a/man/MCMCirt1d.Rd b/man/MCMCirt1d.Rd
index 2aa0f76..10f2ed7 100644
--- a/man/MCMCirt1d.Rd
+++ b/man/MCMCirt1d.Rd
@@ -184,6 +184,11 @@ MCMCirt1d(datamatrix, theta.constraints=list(), burnin = 1000,
Valen E. Johnson and James H. Albert. 1999. ``Ordinal Data Modeling."
Springer: New York.
+ Andrew D. Martin, Kevin M. Quinn, and Jong Hee Park. 2011.
+ ``MCMCpack: Markov Chain Monte Carlo in R.'',
+ \emph{Journal of Statistical Software}. 42(9): 1-21.
+ \url{http://www.jstatsoft.org/v42/i09/}.
+
Daniel Pemstein, Kevin M. Quinn, and Andrew D. Martin. 2007.
\emph{Scythe Statistical Library 1.0.} \url{http://scythe.wustl.edu}.
diff --git a/man/MCMCirtHier1d.Rd b/man/MCMCirtHier1d.Rd
index 7a42fbf..5d66e13 100644
--- a/man/MCMCirtHier1d.Rd
+++ b/man/MCMCirtHier1d.Rd
@@ -240,6 +240,11 @@ The parameters of interest are
Liu, Jun S. and Ying Nian Wu. 1999. ``Parameter Expansion for Data Augmentation.'' \emph{Journal of the American Statistical Association} 94: 1264--1274.
+ Andrew D. Martin, Kevin M. Quinn, and Jong Hee Park. 2011.
+ ``MCMCpack: Markov Chain Monte Carlo in R.'',
+ \emph{Journal of Statistical Software}. 42(9): 1-21.
+ \url{http://www.jstatsoft.org/v42/i09/}.
+
Daniel Pemstein, Kevin M. Quinn, and Andrew D. Martin. 2007.
\emph{Scythe Statistical Library 1.0.} \url{http://scythe.wustl.edu}.
diff --git a/man/MCMCirtKd.Rd b/man/MCMCirtKd.Rd
index 149e388..ca72491 100644
--- a/man/MCMCirtKd.Rd
+++ b/man/MCMCirtKd.Rd
@@ -195,6 +195,11 @@ MCMCirtKd(datamatrix, dimensions, item.constraints=list(),
Valen E. Johnson and James H. Albert. 1999. \emph{Ordinal Data Modeling}.
Springer: New York.
+ Andrew D. Martin, Kevin M. Quinn, and Jong Hee Park. 2011.
+ ``MCMCpack: Markov Chain Monte Carlo in R.'',
+ \emph{Journal of Statistical Software}. 42(9): 1-21.
+ \url{http://www.jstatsoft.org/v42/i09/}.
+
Daniel Pemstein, Kevin M. Quinn, and Andrew D. Martin. 2007.
\emph{Scythe Statistical Library 1.0.} \url{http://scythe.wustl.edu}.
diff --git a/man/MCMCirtKdHet.Rd b/man/MCMCirtKdHet.Rd
index 1ec62a0..5cdedcf 100644
--- a/man/MCMCirtKdHet.Rd
+++ b/man/MCMCirtKdHet.Rd
@@ -141,8 +141,8 @@ store.sigma = TRUE, drop.constant.items = TRUE)
object can be summarized by functions provided by the coda package.
}
\references{
- Benjamin E. Lauderdale. ``Unpredictable Voters in Ideal Point Estimation''
-\emph{Political Analysis.} forthcoming.
+ Benjamin E. Lauderdale. 2010. ``Unpredictable Voters in Ideal Point Estimation''
+\emph{Political Analysis.} 18: 151-171.
}
\author{
Benjamin E. Lauderdale, \email{blauderd at princeton.edu},
diff --git a/man/MCMCirtKdRob.Rd b/man/MCMCirtKdRob.Rd
index 81c457f..9ee7406 100644
--- a/man/MCMCirtKdRob.Rd
+++ b/man/MCMCirtKdRob.Rd
@@ -297,6 +297,11 @@ MCMCirtKdRob(datamatrix, dimensions, item.constraints=list(),
Valen E. Johnson and James H. Albert. 1999. \emph{Ordinal Data Modeling}.
Springer: New York.
+ Andrew D. Martin, Kevin M. Quinn, and Jong Hee Park. 2011.
+ ``MCMCpack: Markov Chain Monte Carlo in R.'',
+ \emph{Journal of Statistical Software}. 42(9): 1-21.
+ \url{http://www.jstatsoft.org/v42/i09/}.
+
Daniel Pemstein, Kevin M. Quinn, and Andrew D. Martin. 2007.
\emph{Scythe Statistical Library 1.0.} \url{http://scythe.wustl.edu}.
diff --git a/man/MCMClogit.Rd b/man/MCMClogit.Rd
index c17b218..d916c82 100644
--- a/man/MCMClogit.Rd
+++ b/man/MCMClogit.Rd
@@ -135,6 +135,10 @@ MCMClogit(formula, data=NULL, burnin = 1000, mcmc = 10000,
}
\references{
+Andrew D. Martin, Kevin M. Quinn, and Jong Hee Park. 2011.
+ ``MCMCpack: Markov Chain Monte Carlo in R.'',
+ \emph{Journal of Statistical Software}. 42(9): 1-21.
+ \url{http://www.jstatsoft.org/v42/i09/}.
Daniel Pemstein, Kevin M. Quinn, and Andrew D. Martin. 2007.
\emph{Scythe Statistical Library 1.0.} \url{http://scythe.wustl.edu}.
diff --git a/man/MCMCmetrop1R.Rd b/man/MCMCmetrop1R.Rd
index 30d5f5d..edcd04e 100644
--- a/man/MCMCmetrop1R.Rd
+++ b/man/MCMCmetrop1R.Rd
@@ -208,6 +208,11 @@ mode. This last calculation is done via an initial call to
Andrew Gelman, John B. Carlin, Hal S. Stern, and Donald
B. Rubin. 2003. \emph{Bayesian Data Analysis}. 2nd Edition. Boca
Raton: Chapman & Hall/CRC.
+
+ Andrew D. Martin, Kevin M. Quinn, and Jong Hee Park. 2011.
+ ``MCMCpack: Markov Chain Monte Carlo in R.'',
+ \emph{Journal of Statistical Software}. 42(9): 1-21.
+ \url{http://www.jstatsoft.org/v42/i09/}.
Daniel Pemstein, Kevin M. Quinn, and Andrew D. Martin. 2007.
\emph{Scythe Statistical Library 1.0.} \url{http://scythe.wustl.edu}.
diff --git a/man/MCMCmixfactanal.Rd b/man/MCMCmixfactanal.Rd
index c674d4e..8ae66cb 100644
--- a/man/MCMCmixfactanal.Rd
+++ b/man/MCMCmixfactanal.Rd
@@ -216,7 +216,14 @@ MCMCmixfactanal(x, factors, lambda.constraints=list(),
}
\references{
-
+ Kevin M. Quinn. 2004. ``Bayesian Factor Analysis for Mixed Ordinal and
+ Continuous Responses.'' \emph{Political Analysis}. 12: 338-353.
+
+ Andrew D. Martin, Kevin M. Quinn, and Jong Hee Park. 2011.
+ ``MCMCpack: Markov Chain Monte Carlo in R.'',
+ \emph{Journal of Statistical Software}. 42(9): 1-21.
+ \url{http://www.jstatsoft.org/v42/i09/}.
+
M. K. Cowles. 1996. ``Accelerating Monte Carlo Markov Chain Convergence for
Cumulative-link Generalized Linear Models." \emph{Statistics and Computing.}
6: 101-110.
@@ -230,9 +237,7 @@ MCMCmixfactanal(x, factors, lambda.constraints=list(),
Martyn Plummer, Nicky Best, Kate Cowles, and Karen Vines. 2002.
\emph{Output Analysis and Diagnostics for MCMC (CODA)}.
\url{http://www-fis.iarc.fr/coda/}.
-
- Kevin M. Quinn. 2004. ``Bayesian Factor Analysis for Mixed Ordinal and
- Continuous Responses.'' \emph{Political Analysis}. 12: 338-353.
+
}
diff --git a/man/MCMCmnl.Rd b/man/MCMCmnl.Rd
index 418a40f..5c3f670 100644
--- a/man/MCMCmnl.Rd
+++ b/man/MCMCmnl.Rd
@@ -151,7 +151,12 @@ that can be used to analyze the posterior sample.
}
\references{
-
+
+Andrew D. Martin, Kevin M. Quinn, and Jong Hee Park. 2011.
+ ``MCMCpack: Markov Chain Monte Carlo in R.'',
+ \emph{Journal of Statistical Software}. 42(9): 1-21.
+ \url{http://www.jstatsoft.org/v42/i09/}.
+
Daniel Pemstein, Kevin M. Quinn, and Andrew D. Martin. 2007.
\emph{Scythe Statistical Library 1.0.} \url{http://scythe.wustl.edu}.
diff --git a/man/MCMCoprobit.Rd b/man/MCMCoprobit.Rd
index 1f15640..6913fee 100644
--- a/man/MCMCoprobit.Rd
+++ b/man/MCMCoprobit.Rd
@@ -129,6 +129,11 @@ that can be used to analyze the posterior sample.
M. K. Cowles. 1996. ``Accelerating Monte Carlo Markov Chain Convergence for
Cumulative-link Generalized Linear Models." \emph{Statistics and Computing.}
6: 101-110.
+
+ Andrew D. Martin, Kevin M. Quinn, and Jong Hee Park. 2011.
+ ``MCMCpack: Markov Chain Monte Carlo in R.'',
+ \emph{Journal of Statistical Software}. 42(9): 1-21.
+ \url{http://www.jstatsoft.org/v42/i09/}.
Valen E. Johnson and James H. Albert. 1999. \emph{Ordinal Data Modeling}.
Springer: New York.
diff --git a/man/MCMCoprobitChange.Rd b/man/MCMCoprobitChange.Rd
index 9bdedec..fe4a735 100644
--- a/man/MCMCoprobitChange.Rd
+++ b/man/MCMCoprobitChange.Rd
@@ -135,7 +135,12 @@
Jong Hee Park. 2011. ``Changepoint Analysis of Binary and Ordinal Probit Models:
An Application to Bank Rate Policy Under the Interwar Gold Standard." \emph{Political Analysis}.
- Siddhartha Chib. 1998. "Estimation and comparison of multiple change-point models."
+ Andrew D. Martin, Kevin M. Quinn, and Jong Hee Park. 2011.
+ ``MCMCpack: Markov Chain Monte Carlo in R.'',
+ \emph{Journal of Statistical Software}. 42(9): 1-21.
+ \url{http://www.jstatsoft.org/v42/i09/}.
+
+ Siddhartha Chib. 1998. ``Estimation and comparison of multiple change-point models.''
\emph{Journal of Econometrics}. 86: 221-241.
}
diff --git a/man/MCMCordfactanal.Rd b/man/MCMCordfactanal.Rd
index 3b934ac..8c8d662 100644
--- a/man/MCMCordfactanal.Rd
+++ b/man/MCMCordfactanal.Rd
@@ -182,8 +182,13 @@ MCMCordfactanal(x, factors, lambda.constraints=list(),
}
\references{
- Shawn Treier and Simon Jackman. 2003. ``Democracy as a Latent Variable."
- Paper presented at the Midwest Political Science Association Annual Meeting.
+ Shawn Treier and Simon Jackman. 2008. ``Democracy as a Latent Variable."
+ \emph{American Journal of Political Science}. 52: 201-217.
+
+ Andrew D. Martin, Kevin M. Quinn, and Jong Hee Park. 2011.
+ ``MCMCpack: Markov Chain Monte Carlo in R.'',
+ \emph{Journal of Statistical Software}. 42(9): 1-21.
+ \url{http://www.jstatsoft.org/v42/i09/}.
M. K. Cowles. 1996. ``Accelerating Monte Carlo Markov Chain Convergence for
Cumulative-link Generalized Linear Models." \emph{Statistics and Computing.}
diff --git a/man/MCMCpoisson.Rd b/man/MCMCpoisson.Rd
index 78a3a59..055763c 100644
--- a/man/MCMCpoisson.Rd
+++ b/man/MCMCpoisson.Rd
@@ -109,7 +109,11 @@ MCMCpoisson(formula, data = NULL, burnin = 1000, mcmc = 10000,
}
\references{
-
+Andrew D. Martin, Kevin M. Quinn, and Jong Hee Park. 2011.
+ ``MCMCpack: Markov Chain Monte Carlo in R.'',
+ \emph{Journal of Statistical Software}. 42(9): 1-21.
+ \url{http://www.jstatsoft.org/v42/i09/}.
+
Daniel Pemstein, Kevin M. Quinn, and Andrew D. Martin. 2007.
\emph{Scythe Statistical Library 1.0.} \url{http://scythe.wustl.edu}.
diff --git a/man/MCMCpoissonChange.Rd b/man/MCMCpoissonChange.Rd
index 63f8843..9990a1a 100644
--- a/man/MCMCpoissonChange.Rd
+++ b/man/MCMCpoissonChange.Rd
@@ -105,16 +105,21 @@
\author{Jong Hee Park, \email{jhp at uchicago.edu}, \url{http://home.uchicago.edu/~jhp/}.}
\references{
- Jong Hee Park. 2010. "Structural Change in the U.S. Presidents' Use of Force Abroad."
+ Jong Hee Park. 2010. ``Structural Change in the U.S. Presidents' Use of Force Abroad.''
\emph{American Journal of Political Science} 54: 766-782.
- Sylvia Fruhwirth-Schnatter and Helga Wagner 2006. "Auxiliary Mixture Sampling for Parameter-driven Models of
- Time Series of Counts with Applications to State Space Modelling." \emph{Biometrika}. 93:827--841.
+ Sylvia Fruhwirth-Schnatter and Helga Wagner 2006. ``Auxiliary Mixture Sampling for Parameter-driven Models of
+ Time Series of Counts with Applications to State Space Modelling.'' \emph{Biometrika}. 93:827--841.
- Siddhartha Chib. 1998. "Estimation and comparison of multiple change-point models."
+ Siddhartha Chib. 1998. ``Estimation and comparison of multiple change-point models.''
\emph{Journal of Econometrics}. 86: 221-241.
- Siddhartha Chib. 1995. "Marginal Likelihood from the Gibbs Output."
+Andrew D. Martin, Kevin M. Quinn, and Jong Hee Park. 2011.
+ ``MCMCpack: Markov Chain Monte Carlo in R.'',
+ \emph{Journal of Statistical Software}. 42(9): 1-21.
+ \url{http://www.jstatsoft.org/v42/i09/}.
+
+ Siddhartha Chib. 1995. ``Marginal Likelihood from the Gibbs Output.''
\emph{Journal of the American Statistical Association}. 90:
1313-1321.
}
diff --git a/man/MCMCprobit.Rd b/man/MCMCprobit.Rd
index d8b3912..22b5808 100644
--- a/man/MCMCprobit.Rd
+++ b/man/MCMCprobit.Rd
@@ -110,11 +110,16 @@ MCMCprobit(formula, data = NULL, burnin = 1000, mcmc = 10000,
Albert, J. H. and S. Chib. 1995. ``Bayesian Residual Analysis for
Binary Response Regression Models.'' \emph{Biometrika.} 82, 747-759.
+
+Andrew D. Martin, Kevin M. Quinn, and Jong Hee Park. 2011.
+ ``MCMCpack: Markov Chain Monte Carlo in R.'',
+ \emph{Journal of Statistical Software}. 42(9): 1-21.
+ \url{http://www.jstatsoft.org/v42/i09/}.
- Siddhartha Chib. 1995. "Marginal Likelihood from the Gibbs Output."
+ Siddhartha Chib. 1995. ``Marginal Likelihood from the Gibbs Output.''
\emph{Journal of the American Statistical Association}. 90:
1313-1321.
-
+
Daniel Pemstein, Kevin M. Quinn, and Andrew D. Martin. 2007.
\emph{Scythe Statistical Library 1.0.} \url{http://scythe.wustl.edu}.
diff --git a/man/MCMCprobitChange.Rd b/man/MCMCprobitChange.Rd
index 139e9ff..9702c96 100644
--- a/man/MCMCprobitChange.Rd
+++ b/man/MCMCprobitChange.Rd
@@ -115,7 +115,12 @@
Jong Hee Park. 2011. ``Changepoint Analysis of Binary and Ordinal Probit Models:
An Application to Bank Rate Policy Under the Interwar Gold Standard." \emph{Political Analysis}.
- Siddhartha Chib. 1998. "Estimation and comparison of multiple change-point models."
+Andrew D. Martin, Kevin M. Quinn, and Jong Hee Park. 2011.
+ ``MCMCpack: Markov Chain Monte Carlo in R.'',
+ \emph{Journal of Statistical Software}. 42(9): 1-21.
+ \url{http://www.jstatsoft.org/v42/i09/}.
+
+ Siddhartha Chib. 1998. ``Estimation and comparison of multiple change-point models.''
\emph{Journal of Econometrics}. 86: 221-241.
Albert, J. H. and S. Chib. 1993. ``Bayesian Analysis of Binary and
diff --git a/man/MCMCquantreg.Rd b/man/MCMCquantreg.Rd
index d718315..80e387a 100644
--- a/man/MCMCquantreg.Rd
+++ b/man/MCMCquantreg.Rd
@@ -106,9 +106,9 @@ The likelihood is formed based on assuming independent Asymmetric Laplace distri
\references{ Daniel Pemstein, Kevin M. Quinn, and Andrew D. Martin. 2007.
\emph{Scythe Statistical Library 1.2.} \url{http://scythe.wustl.edu}.
- Craig Reed and Keming Yu. 2009. "An Efficient Gibbs Sampler for Bayesian Quantile Regression." Technical Report.
+ Craig Reed and Keming Yu. 2009. ``An Efficient Gibbs Sampler for Bayesian Quantile Regression.'' Technical Report.
- Keming Yu and Jin Zhang. 2005. "A Three Parameter Asymmetric Laplace Distribution and it's extensions."
+ Keming Yu and Jin Zhang. 2005. ``A Three Parameter Asymmetric Laplace Distribution and it's extensions.''
\emph{Communications in Statistics - Theory and Methods}, 34, 1867-1879.
Martyn Plummer, Nicky Best, Kate Cowles, and Karen Vines. 2002.
diff --git a/man/MCMCregress.Rd b/man/MCMCregress.Rd
index 0bce653..43847b8 100644
--- a/man/MCMCregress.Rd
+++ b/man/MCMCregress.Rd
@@ -118,11 +118,16 @@ MCMCregress(formula, data = NULL, burnin = 1000, mcmc = 10000,
}
\references{
- Siddhartha Chib. 1995. "Marginal Likelihood from the Gibbs Output."
+Andrew D. Martin, Kevin M. Quinn, and Jong Hee Park. 2011.
+``MCMCpack: Markov Chain Monte Carlo in R.'',
+ \emph{Journal of Statistical Software}. 42(9): 1-21.
+ \url{http://www.jstatsoft.org/v42/i09/}.
+
+ Siddhartha Chib. 1995. ``Marginal Likelihood from the Gibbs Output.''
\emph{Journal of the American Statistical Association}. 90:
1313-1321.
- Robert E. Kass and Adrian E. Raftery. 1995. "Bayes Factors."
+ Robert E. Kass and Adrian E. Raftery. 1995. ``Bayes Factors.''
\emph{Journal of the American Statistical Association}. 90: 773-795.
Daniel Pemstein, Kevin M. Quinn, and Andrew D. Martin. 2007.
diff --git a/man/MCMCtobit.Rd b/man/MCMCtobit.Rd
index 2b27b51..bcd32d7 100644
--- a/man/MCMCtobit.Rd
+++ b/man/MCMCtobit.Rd
@@ -124,6 +124,11 @@ MCMCtobit(formula, data = NULL, below = 0, above = Inf,
}
\references{
+Andrew D. Martin, Kevin M. Quinn, and Jong Hee Park. 2011.
+ ``MCMCpack: Markov Chain Monte Carlo in R.'',
+ \emph{Journal of Statistical Software}. 42(9): 1-21.
+ \url{http://www.jstatsoft.org/v42/i09/}.
+
Daniel Pemstein, Kevin M. Quinn, and Andrew D. Martin. 2007.
\emph{Scythe Statistical Library 1.0.} \url{http://scythe.wustl.edu}.
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