[r-cran-mcmcpack] 68/90: Imported Debian patch 1.2-4-1
Andreas Tille
tille at debian.org
Fri Dec 16 09:07:49 UTC 2016
This is an automated email from the git hooks/post-receive script.
tille pushed a commit to branch master
in repository r-cran-mcmcpack.
commit ef5dd1fd5b7fa9f87f802b98b58c5f9fed4e9340
Merge: d5a5b72 0c00623
Author: Chris Lawrence <lawrencc at debian.org>
Date: Wed Apr 3 04:01:40 2013 -0400
Imported Debian patch 1.2-4-1
DESCRIPTION | 10 +-
HISTORY | 3 +
MD5 | 40 +-
confdefs.h | 16 -
configure | 4211 ++++++++++++++++-----------------
data/PErisk.rda | Bin 1967 -> 1972 bytes
data/SupremeCourt.rda | Bin 470 -> 476 bytes
debian/changelog | 7 +
debian/compat | 2 +-
debian/control | 4 +-
debian/patches/debian-changes-1.0-5-1 | 114 -
debian/patches/gcc-4.7.patch | 33 -
debian/patches/series | 2 -
debian/rules | 15 +
src/HMMmultivariateGaussian.cc | 96 +-
src/Makevars | 2 +-
src/Makevars.in | 2 +-
src/algorithm.h | 4 +
src/datablock.h | 5 +-
src/defs.h | 4 +-
src/error.h | 73 +-
src/ide.h | 71 +-
src/la.h | 6 +-
src/lapack.h | 4 +-
src/lecuyer.h | 8 +
src/matrix.h | 38 +-
src/optimize.h | 17 +-
src/rng.h | 15 +-
src/wrapped_generator.h | 179 ++
29 files changed, 2517 insertions(+), 2464 deletions(-)
diff --cc debian/changelog
index 338b48a,0000000..1f50d92
mode 100644,000000..100644
--- a/debian/changelog
+++ b/debian/changelog
@@@ -1,336 -1,0 +1,343 @@@
++mcmcpack (1.2-4-1) unstable; urgency=low
++
++ * New upstream release.
++ * Rebuild for R 3.0.
++
++ -- Chris Lawrence <lawrencc at debian.org> Wed, 03 Apr 2013 04:01:40 -0400
++
+mcmcpack (1.2-3-1) unstable; urgency=low
+
+ * New upstream release.
+
+ -- Chris Lawrence <lawrencc at debian.org> Sun, 13 May 2012 22:20:11 -0400
+
+mcmcpack (1.2-2-1.1) unstable; urgency=low
+
+ * Non-maintainer upload.
+ * Fix "ftbfs with GCC-4.7": add patch gcc-4.7.patch ("this->" qualifier).
+ (Closes: #667272)
+
+ -- gregor herrmann <gregoa at debian.org> Tue, 08 May 2012 17:06:03 +0200
+
+mcmcpack (1.2-2-1) unstable; urgency=low
+
+ * New upstream release.
+
+ -- Chris Lawrence <lawrencc at debian.org> Thu, 22 Mar 2012 13:52:23 -0400
+
+mcmcpack (1.1-5-1) unstable; urgency=low
+
+ * New upstream release.
+
+ -- Chris Lawrence <lawrencc at debian.org> Tue, 25 Oct 2011 22:38:29 -0400
+
+mcmcpack (1.1-4-1) unstable; urgency=low
+
+ * New upstream release.
+
+ -- Chris Lawrence <lawrencc at debian.org> Sun, 09 Oct 2011 05:29:12 -0400
+
+mcmcpack (1.1-1-1) unstable; urgency=low
+
+ * New upstream release.
+
+ -- Chris Lawrence <lawrencc at debian.org> Sat, 23 Jul 2011 19:31:07 -0500
+
+mcmcpack (1.0-11-1) unstable; urgency=low
+
+ * New upstream release.
+
+ -- Chris Lawrence <lawrencc at debian.org> Fri, 06 May 2011 13:16:06 -0500
+
+mcmcpack (1.0-10-1) unstable; urgency=low
+
+ * New upstream release.
+
+ -- Chris Lawrence <lawrencc at debian.org> Sun, 06 Mar 2011 17:16:24 -0600
+
+mcmcpack (1.0-9-2) unstable; urgency=low
+
+ * Use simplified debian/rules.
+
+ -- Chris Lawrence <lawrencc at debian.org> Sat, 05 Feb 2011 02:31:18 -0600
+
+mcmcpack (1.0-9-1) unstable; urgency=low
+
+ * New upstream release.
+
+ -- Chris Lawrence <lawrencc at debian.org> Sat, 05 Feb 2011 02:18:45 -0600
+
+mcmcpack (1.0-8-1) unstable; urgency=low
+
+ * New upstream release.
+
+ -- Chris Lawrence <lawrencc at debian.org> Sat, 15 Jan 2011 11:24:48 -0600
+
+mcmcpack (1.0-7-1) unstable; urgency=low
+
+ * New upstream release.
+
+ -- Chris Lawrence <lawrencc at debian.org> Wed, 07 Jul 2010 03:47:13 -0500
+
+mcmcpack (1.0-6-1) unstable; urgency=low
+
+ * New upstream release.
+
+ -- Chris Lawrence <lawrencc at debian.org> Thu, 13 May 2010 02:03:43 -0500
+
+mcmcpack (1.0-5-2) unstable; urgency=low
+
+ * Update dependencies for VR bundle split.
+
+ -- Chris Lawrence <lawrencc at debian.org> Mon, 12 Apr 2010 23:44:47 -0500
+
+mcmcpack (1.0-5-1) unstable; urgency=low
+
+ * New upstream release.
+
+ -- Chris Lawrence <lawrencc at debian.org> Tue, 30 Mar 2010 20:11:33 -0500
+
+mcmcpack (1.0-4-2) unstable; urgency=low
+
+ * Rebuild for R >= 2.10.0.
+
+ -- Chris Lawrence <lawrencc at debian.org> Mon, 26 Oct 2009 00:20:55 -0500
+
+mcmcpack (1.0-4-1) unstable; urgency=low
+
+ * New upstream release.
+
+ -- Chris Lawrence <lawrencc at debian.org> Thu, 10 Sep 2009 00:34:49 -0500
+
+mcmcpack (1.0-3-1) unstable; urgency=low
+
+ * New upstream release
+
+ -- Chris Lawrence <lawrencc at debian.org> Thu, 30 Jul 2009 15:01:11 -0500
+
+mcmcpack (1.0-2-1) unstable; urgency=low
+
+ * New upstream release.
+
+ -- Chris Lawrence <lawrencc at debian.org> Sat, 25 Jul 2009 01:25:18 -0500
+
+mcmcpack (1.0-1-1) unstable; urgency=low
+
+ * New upstream release.
+
+ -- Chris Lawrence <lawrencc at debian.org> Wed, 01 Jul 2009 18:31:04 -0500
+
+mcmcpack (0.9-6-1) unstable; urgency=low
+
+ * New upstream release.
+
+ -- Chris Lawrence <lawrencc at debian.org> Mon, 16 Mar 2009 22:18:40 -0500
+
+mcmcpack (0.9-4-1) unstable; urgency=low
+
+ * New upstream release.
+
+ -- Chris Lawrence <lawrencc at debian.org> Tue, 04 Mar 2008 14:52:43 -0600
+
+mcmcpack (0.9-3-1) unstable; urgency=low
+
+ * New upstream release.
+ * Fix FTBFS on amd64. (Closes: #417427)
+
+ -- Chris Lawrence <lawrencc at debian.org> Sat, 01 Mar 2008 22:51:00 -0600
+
+mcmcpack (0.9-2-1) unstable; urgency=low
+
+ * New upstream release
+
+ -- Chris Lawrence <lawrencc at debian.org> Sun, 07 Oct 2007 20:16:55 -0500
+
+mcmcpack (0.9-1-1) unstable; urgency=low
+
+ * New upstream release
+
+ -- Chris Lawrence <lawrencc at debian.org> Mon, 03 Sep 2007 15:39:59 -0500
+
+mcmcpack (0.8-2-1) unstable; urgency=low
+
+ * New upstream release
+
+ -- Chris Lawrence <lawrencc at debian.org> Tue, 10 Jul 2007 17:27:59 -0500
+
+mcmcpack (0.8-1-1) unstable; urgency=low
+
+ * New upstream release
+
+ -- Chris Lawrence <lawrencc at debian.org> Sat, 20 Jan 2007 21:45:31 -0600
+
+mcmcpack (0.7-4-2) unstable; urgency=low
+
+ * Look for trunc() in -lm, to fix FTBFS on m68k (and possibly other
+ platforms?). (Closes: #389400)
+
+ -- Chris Lawrence <lawrencc at debian.org> Sun, 8 Oct 2006 18:21:07 -0500
+
+mcmcpack (0.7-4-1) unstable; urgency=low
+
+ * New upstream release.
+
+ -- Chris Lawrence <lawrencc at debian.org> Thu, 5 Oct 2006 02:12:06 -0500
+
+mcmcpack (0.7-3-1) unstable; urgency=low
+
+ * New upstream release.
+
+ -- Chris Lawrence <lawrencc at debian.org> Thu, 21 Sep 2006 21:30:32 -0500
+
+mcmcpack (0.7-2-1) unstable; urgency=low
+
+ * New upstream release.
+
+ -- Chris Lawrence <lawrencc at debian.org> Thu, 1 Jun 2006 16:10:06 -0400
+
+mcmcpack (0.7-1-1) unstable; urgency=low
+
+ * New upstream release.
+ * Revise description to omit discussion of "upcoming" models that don't
+ seem to be upcoming; add suggestions of bayesm, eco, and mnp to fill
+ in some of the gaps.
+
+ -- Chris Lawrence <lawrencc at debian.org> Sun, 29 Jan 2006 22:01:22 -0500
+
+mcmcpack (0.6-6-1) unstable; urgency=low
+
+ * New upstream release.
+
+ -- Chris Lawrence <lawrencc at debian.org> Thu, 8 Dec 2005 08:59:17 -0500
+
+mcmcpack (0.6-5-2) unstable; urgency=low
+
+ * Fix FTBFS with gcc 4.0.2-3 and later. (Closes: #336281)
+
+ -- Chris Lawrence <lawrencc at debian.org> Sat, 29 Oct 2005 23:40:09 -0400
+
+mcmcpack (0.6-5-1) unstable; urgency=low
+
+ * New upstream release.
+
+ -- Chris Lawrence <lawrencc at debian.org> Thu, 30 Jun 2005 16:03:34 -0500
+
+mcmcpack (0.6-4-1) unstable; urgency=low
+
+ * New upstream release.
+
+ -- Chris Lawrence <lawrencc at debian.org> Sat, 2 Apr 2005 23:07:43 -0600
+
+mcmcpack (0.6-1-1) unstable; urgency=low
+
+ * New upstream release.
+
+ -- Chris Lawrence <lawrencc at debian.org> Thu, 3 Mar 2005 19:01:23 -0600
+
+mcmcpack (0.5-2-4) unstable; urgency=low
+
+ * Really fix FTBFS on autobuilders.
+
+ -- Chris Lawrence <lawrencc at debian.org> Mon, 11 Oct 2004 10:56:34 -0500
+
+mcmcpack (0.5-2-3) unstable; urgency=low
+
+ * Fix FTBFS on autobuilders.
+
+ -- Chris Lawrence <lawrencc at debian.org> Sat, 9 Oct 2004 21:25:59 -0500
+
+mcmcpack (0.5-2-2) unstable; urgency=low
+
+ * Rebuild for R 2.0.0.
+
+ -- Chris Lawrence <lawrencc at debian.org> Fri, 8 Oct 2004 00:24:03 -0500
+
+mcmcpack (0.5-2-1) unstable; urgency=low
+
+ * New upstream release. Kudos to Andrew, Kevin, and Pierre L'Ecuyer for
+ their quick response to license issues with 0.5-1.
+ * Now require r-cran-coda (>> 0.8).
+ * Include HISTORY file as upstream changelog.
+
+ -- Chris Lawrence <lawrencc at debian.org> Tue, 17 Aug 2004 21:38:55 -0500
+
+mcmcpack (0.4-8-2) unstable; urgency=low
+
+ * Update dependencies for r-recommended package split.
+
+ -- Chris Lawrence <lawrencc at debian.org> Mon, 3 May 2004 14:15:55 -0500
+
+mcmcpack (0.4-8-1) unstable; urgency=low
+
+ * New upstream release.
+
+ -- Chris Lawrence <lawrencc at debian.org> Tue, 17 Feb 2004 23:35:33 -0600
+
+mcmcpack (0.4-7-1) unstable; urgency=low
+
+ * New upstream release.
+ * Update control file description for new upstream URL.
+
+ -- Chris Lawrence <lawrencc at debian.org> Thu, 5 Feb 2004 16:50:13 -0600
+
+mcmcpack (0.4-6-1) unstable; urgency=low
+
+ * New upstream release
+ + Fixed a bug in rnoncenhypergeom()
+
+ -- Chris Lawrence <lawrencc at debian.org> Fri, 5 Dec 2003 10:33:51 -0600
+
+mcmcpack (0.4-5-1) unstable; urgency=low
+
+ * New upstream release.
+
+ -- Chris Lawrence <lawrencc at debian.org> Mon, 17 Nov 2003 13:17:39 -0600
+
+mcmcpack (0.4-3-1) unstable; urgency=low
+
+ * New upstream release.
+
+ -- Chris Lawrence <lawrencc at debian.org> Mon, 13 Oct 2003 08:19:13 -0500
+
+mcmcpack (0.4-2-1) unstable; urgency=low
+
+ * New upstream release.
+ * Revised packaging to be more compatible with new upstream versions.
+
+ -- Chris Lawrence <lawrencc at debian.org> Sat, 9 Aug 2003 22:44:39 -0500
+
+mcmcpack (0.4-1-1) unstable; urgency=low
+
+ * The "my days of being ABD are close to being over" release.
+ * New upstream release.
+ * New features:
+ + Metric and ordinal factor analysis models.
+ + k-dimensional item response theory model.
+ + A few new density and random draw functions.
+ * Install package to /usr/lib/R/site-library.
+ * Updated to standards-version 3.5.10; no substantive changes.
+ * Add Daniel Pemstein to upstream authors.
+
+ -- Chris Lawrence <lawrencc at debian.org> Tue, 10 Jun 2003 14:11:07 -0500
+
+mcmcpack (0.3-11-3) unstable; urgency=low
+
+ * Remove build hack now that R 1.7.0 has been released incorporating the
+ needed fix.
+ * Depend on r-recommended and r-base-core; remove r-base dependency.
+
+ -- Chris Lawrence <lawrencc at debian.org> Mon, 21 Apr 2003 11:33:45 -0500
+
+mcmcpack (0.3-11-2) unstable; urgency=medium
+
+ * Depend on r-cran-coda. (Closes: #187071)
+ * Note in the description that other samplers are used, in addition to
+ Gibbs sampling.
+
+ -- Chris Lawrence <lawrencc at debian.org> Sat, 5 Apr 2003 22:29:25 -0600
+
+mcmcpack (0.3-11-1) unstable; urgency=low
+
+ * Initial Release. (Closes: #169717)
+
+ -- Chris Lawrence <lawrencc at debian.org> Sun, 30 Mar 2003 08:10:27 -0600
diff --cc debian/compat
index 7f8f011,0000000..ec63514
mode 100644,000000..100644
--- a/debian/compat
+++ b/debian/compat
@@@ -1,1 -1,0 +1,1 @@@
- 7
++9
diff --cc debian/control
index 9d26763,0000000..e5d95bf
mode 100644,000000..100644
--- a/debian/control
+++ b/debian/control
@@@ -1,37 -1,0 +1,37 @@@
+Source: mcmcpack
+Section: gnu-r
+Priority: optional
+Maintainer: Chris Lawrence <lawrencc at debian.org>
- Build-Depends: debhelper (>> 7), r-base-dev (>= 2.10.0), r-cran-coda (>= 0.11-3), r-cran-mass, cdbs
++Build-Depends: debhelper (>> 9), r-base-dev (>= 3.0), r-cran-coda (>= 0.16), r-cran-mass, cdbs, dpkg-dev (>= 1.16.1~)
+Standards-Version: 3.9.3
+Homepage: http://mcmcpack.wustl.edu/
+
+Package: r-cran-mcmcpack
+Architecture: any
- Depends: r-base-core (>= 2.10.0), ${shlibs:Depends}, r-cran-coda (>> 0.11-3), r-cran-mass, ${misc:Depends}, ${R:Depends}
++Depends: ${shlibs:Depends}, r-cran-coda (>= 0.16), r-cran-mass, ${misc:Depends}, ${R:Depends}
+Suggests: r-cran-bayesm, r-cran-eco, r-cran-mnp
+Description: R routines for Markov chain Monte Carlo model estimation
+ This is a set of routines for GNU R that implement various
+ statistical and econometric models using Markov chain Monte Carlo
+ (MCMC) estimation, which allows "solving" models that would otherwise
+ be intractable with traditional techniques, particularly problems in
+ Bayesian statistics (where one or more "priors" are used as part of
+ the estimation procedure, instead of an assumption of ignorance about
+ the "true" point estimates), although MCMC can also be used to solve
+ frequentist statistical problems with uninformative priors. MCMC
+ techniques are also preferable over direct estimation in the presence
+ of missing data.
+ .
+ Currently implemented are a number of ecological inference (EI)
+ routines (for estimating individual-level attributes or behavior from
+ aggregate data, such as electoral returns or census results), as well
+ as models for traditional linear panel and cross-sectional data, some
+ visualization routines for EI diagnostics, two item-response theory
+ (or ideal-point estimation) models, metric, ordinal, and
+ mixed-response factor analysis, and models for Gaussian (linear) and
+ Poisson regression, logistic regression (or logit), and binary and
+ ordinal-response probit models.
+ .
+ The suggested packages (r-cran-bayesm, -eco, and -mnp) contain
+ additional models that may also be useful for those interested in
+ this package.
diff --cc debian/rules
index c47d6bc,0000000..2aeed9a
mode 100755,000000..100755
--- a/debian/rules
+++ b/debian/rules
@@@ -1,9 -1,0 +1,24 @@@
+#!/usr/bin/make -f
+# -*- makefile -*-
+# debian/rules file for the Debian/GNU Linux r-cran-mcmcpack package
+
++DPKG_EXPORT_BUILDFLAGS = 1
++include /usr/share/dpkg/buildflags.mk
++
++PKG_CFLAGS=$(CFLAGS)
++PKG_CXXFLAGS=$(CXXFLAGS)
++PKG_CPPFLAGS=$(CPPFLAGS)
++PKG_FFLAGS=$(FFLAGS)
++
++export PKG_CFLAGS PKG_CXXFLAGS PKG_CPPFLAGS PKG_FFLAGS
++
++makeFlags="LDFLAGS=$(LDFLAGS)"
++
+include /usr/share/R/debian/r-cran.mk
+
+## Remove extra license file
+common-install-arch::
+ rm -vf debian/r-cran-mcmcpack/usr/lib/R/site-library/MCMCpack/LICENSE
++
++clean::
++ rm -vf src/Makevars
--
Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-science/packages/r-cran-mcmcpack.git
More information about the debian-science-commits
mailing list