[r-cran-mcmcpack] 81/90: Imported Upstream version 1.3-8
Andreas Tille
tille at debian.org
Fri Dec 16 09:07:51 UTC 2016
This is an automated email from the git hooks/post-receive script.
tille pushed a commit to branch master
in repository r-cran-mcmcpack.
commit 5f2324acf0fbd76cf271201afee1cc9b293932d0
Author: Andreas Tille <tille at debian.org>
Date: Fri Dec 16 09:01:31 2016 +0100
Imported Upstream version 1.3-8
---
DESCRIPTION | 8 ++++----
MD5 | 52 ++++++++++++++++++++++++------------------------
man/MCMCSVDreg.Rd | 2 +-
man/MCMCdynamicEI.Rd | 2 +-
man/MCMCfactanal.Rd | 2 +-
man/MCMChierEI.Rd | 2 +-
man/MCMChlogit.Rd | 2 +-
man/MCMChpoisson.Rd | 2 +-
man/MCMChregress.Rd | 2 +-
man/MCMCirt1d.Rd | 2 +-
man/MCMCirtHier1d.Rd | 2 +-
man/MCMCirtKd.Rd | 2 +-
man/MCMCirtKdRob.Rd | 2 +-
man/MCMClogit.Rd | 2 +-
man/MCMCmetrop1R.Rd | 2 +-
man/MCMCmixfactanal.Rd | 2 +-
man/MCMCmnl.Rd | 2 +-
man/MCMCoprobit.Rd | 2 +-
man/MCMCordfactanal.Rd | 2 +-
man/MCMCpoisson.Rd | 2 +-
man/MCMCprobit.Rd | 2 +-
man/MCMCquantreg.Rd | 2 +-
man/MCMCregress.Rd | 2 +-
man/MCMCregressChange.Rd | 6 ++++--
man/MCMCtobit.Rd | 2 +-
man/SSVSquantreg.Rd | 2 +-
src/MCMCpoissonChange.cc | 2 +-
27 files changed, 58 insertions(+), 56 deletions(-)
diff --git a/DESCRIPTION b/DESCRIPTION
index 8c91ff5..d23b737 100644
--- a/DESCRIPTION
+++ b/DESCRIPTION
@@ -1,6 +1,6 @@
Package: MCMCpack
-Version: 1.3-7
-Date: 2016-8-17
+Version: 1.3-8
+Date: 2016-10-26
Title: Markov Chain Monte Carlo (MCMC) Package
Author: Andrew D. Martin, Kevin M. Quinn, and Jong Hee Park
Maintainer: Jong Hee Park <jongheepark at snu.ac.kr>
@@ -19,7 +19,7 @@ Description: Contains functions to perform Bayesian
License: GPL-3
SystemRequirements: gcc (>= 4.0)
URL: http://mcmcpack.berkeley.edu
-Packaged: 2016-08-18 19:26:47 UTC; kquinn
+Packaged: 2016-10-26 16:22:17 UTC; interstellar
NeedsCompilation: yes
Repository: CRAN
-Date/Publication: 2016-08-21 10:55:48
+Date/Publication: 2016-10-27 11:17:36
diff --git a/MD5 b/MD5
index d706182..9c44e44 100644
--- a/MD5
+++ b/MD5
@@ -1,4 +1,4 @@
-f37e82e9907996b7057dac78f0c62ed1 *DESCRIPTION
+0b992436ebaad8bc6ac4241c23f24434 *DESCRIPTION
d332312be2ebe4eecbb2a8d76647127a *NAMESPACE
21f17b9451d7ec3760fe3fe69336fe0c *R/BayesFactors.R
9c52f72ee21a71bfbfd312cb56233125 *R/HMMpanelFE.R
@@ -65,36 +65,36 @@ a5cfcf73e21c03eeaf4f3baa5c492c14 *inst/CITATION
2b42855343b5f0c51c7e9411aef57509 *man/BayesFactor.Rd
873c9a9c8f8e4808c417f14a857a562b *man/HMMpanelFE.Rd
c199d84ef2c1edef1858a3b25b8189e0 *man/HMMpanelRE.Rd
-1fbc51fe87be958a30d1ae52085b9a6b *man/MCMCSVDreg.Rd
+609f96ed074280c71d5b4373ca19a72f *man/MCMCSVDreg.Rd
e253ed3b10b78fa171e7a987fba251bb *man/MCMCbinaryChange.Rd
-b7f1245bf640f205c7927ac8b4dd5e1b *man/MCMCdynamicEI.Rd
+42ed2e22d2686ef79a3a81dd04a536b6 *man/MCMCdynamicEI.Rd
102a94ced183cf023da7696f948bb82f *man/MCMCdynamicIRT1d.Rd
-c217fc089f74217445d253851fc1914b *man/MCMCfactanal.Rd
-a2caad5ef711c10d14cdaf78f22eedc1 *man/MCMChierEI.Rd
-ff610bd17282d6410a06b39a6aef4894 *man/MCMChlogit.Rd
-8e4ae1e291d954cbe901c973b9559978 *man/MCMChpoisson.Rd
-cd31668e1de44486d2b4239d7ce0aca6 *man/MCMChregress.Rd
-9f93a019fac0c29b9509a3b963f52e5a *man/MCMCirt1d.Rd
-25b810b4cf59c1a11a49029ca916eb7c *man/MCMCirtHier1d.Rd
-a06d0a36b4288dac99ff3af14699a26b *man/MCMCirtKd.Rd
+b970882d265064abcac162ede469bd89 *man/MCMCfactanal.Rd
+7701d137a0032da781cd22004293a0ae *man/MCMChierEI.Rd
+2e28ccb281aa22d8470c4c6d3bb39f6e *man/MCMChlogit.Rd
+1c5440753f586d8c0c710d421b00ad8d *man/MCMChpoisson.Rd
+08c17f9e8180fb9bb20a5f5ac14124e2 *man/MCMChregress.Rd
+fa0988935fdc8f21b1650ee50c5a4583 *man/MCMCirt1d.Rd
+3844836a56b0bca52c2faff254810022 *man/MCMCirtHier1d.Rd
+5d4690d50b4403bd32d963e2bfa8c03e *man/MCMCirtKd.Rd
3caeaa4d9321ec9631d97609f114465f *man/MCMCirtKdHet.Rd
-9483a7a5ca0d62bd6a8c48a24182715e *man/MCMCirtKdRob.Rd
-e857d4c2a3b7de7d70e1f26c9e8f6a38 *man/MCMClogit.Rd
-d2fc8449cd90706631ea2a763ef369d8 *man/MCMCmetrop1R.Rd
-076a43d4ed1e5c65ec06bfe27e8a3b32 *man/MCMCmixfactanal.Rd
-9ba1d602d6a9c90ddab157f9e3e49990 *man/MCMCmnl.Rd
-dea3128fd1118249d8c8525c67ad4889 *man/MCMCoprobit.Rd
+881ab2f7c8ef5ab095eb1d125a444d17 *man/MCMCirtKdRob.Rd
+e3b2774c57cefff54f7bc272bfca3077 *man/MCMClogit.Rd
+caefc841b2aa026a4bcb5fe355967d02 *man/MCMCmetrop1R.Rd
+6eed6b40f18ee7217d3fffd915c53db7 *man/MCMCmixfactanal.Rd
+ae1ce850771e11f8c53d2c5103c481de *man/MCMCmnl.Rd
+3691a3f4ff3b7674d9bc9b10c25f5ab9 *man/MCMCoprobit.Rd
0ecd8d01cf09a72edd4e67a06b17027f *man/MCMCoprobitChange.Rd
-8014411538c970d9629a8488ce0b412d *man/MCMCordfactanal.Rd
-db8012e84acf5ae131e29042bf51856f *man/MCMCpoisson.Rd
+ff973f9c62cc24ac114f546876534938 *man/MCMCordfactanal.Rd
+f9a6d9b5899aa9988b94b2ea19fa4efa *man/MCMCpoisson.Rd
f7faabb370a5a432ce36871860c426bb *man/MCMCpoissonChange.Rd
-88e8572e82876f0c840818baf7f46a61 *man/MCMCprobit.Rd
+dfd0f90a541bf2cf42aad395b0de2ede *man/MCMCprobit.Rd
937ec3f54951e90191795373a490c221 *man/MCMCprobitChange.Rd
-1210ba8e3b786f3595be1d9b7b5201a4 *man/MCMCquantreg.Rd
-a9bb9b3e56b45f4bc8ae2ab8e675dfd5 *man/MCMCregress.Rd
-c6d6af6891968992b97bec70eaa3a31e *man/MCMCregressChange.Rd
+f6eaa3f4521e85c18edd95d1d62e10a5 *man/MCMCquantreg.Rd
+5a5ed12edd8dcfe2b33034f3dbf005de *man/MCMCregress.Rd
+3d92501d8847327c73a63acae3a03dac *man/MCMCregressChange.Rd
02144cc6cca72312f4eafb013cfe23c3 *man/MCMCresidualBreakAnalysis.Rd
-e705eb63d2894d739bd565c5fbdde62c *man/MCMCtobit.Rd
+50b8a6ce9424e1b9b95597b0cfc796cd *man/MCMCtobit.Rd
a96eacae6b64827e40505661fb636cd4 *man/MCbinomialbeta.Rd
193401fb83df78594bb965c7bbac968f *man/MCmultinomdirichlet.Rd
4f2164ebeaaf83bde6a7f6c78b718d32 *man/MCnormalnormal.Rd
@@ -105,7 +105,7 @@ f5d931ef328d5fd614ea8547a3f0f62a *man/PErisk.Rd
aa99f8aa2b507bc8e1465a2b6e3993bd *man/QRSSVSplot.Rd
594c242058a0e3f9f2b8b5d4067c5b72 *man/QRSSVSsummary.Rd
4ec36dfc16b0a856aa96dab7fd4e9075 *man/Rehnquist.Rd
-f76137bc031458ca844bb958d4c396bc *man/SSVSquantreg.Rd
+7345aa6e5a1eb9021f66d412e289d087 *man/SSVSquantreg.Rd
d1227e10d63f88c27fce979a25fc6299 *man/Senate.Rd
121aaffb6bef26d405a56017759a8fca *man/SupremeCourt.Rd
1d8a9684290a7afeb7202f3797f5da71 *man/choicevar.Rd
@@ -158,7 +158,7 @@ eaab5804f229b660e958f6aa2cf728ba *src/MCMCmnl.h
bdd18ead0856bbff8587b11639945699 *src/MCMCoprobitChange.cc
fb5a3f2c4ece479ba75dd03d86b3a9e0 *src/MCMCordfactanal.cc
6bfed80bb7c109537461e6381837b6c4 *src/MCMCpoisson.cc
-a90346688ef620947dd846967e181603 *src/MCMCpoissonChange.cc
+aaa2480599f41b21a3e8378b2ecac275 *src/MCMCpoissonChange.cc
84b94f6e67b026a915a23fb85bdaf00b *src/MCMCprobit.cc
e2239f7d7503dc4eca812034f4bc1da8 *src/MCMCprobitChange.cc
a6a01c3906a8b92b9f1a12cfa92a1a63 *src/MCMCprobitres.cc
diff --git a/man/MCMCSVDreg.Rd b/man/MCMCSVDreg.Rd
index 8e78954..0b953b7 100644
--- a/man/MCMCSVDreg.Rd
+++ b/man/MCMCSVDreg.Rd
@@ -152,7 +152,7 @@ Andrew D. Martin, Kevin M. Quinn, and Jong Hee Park. 2011.
Martyn Plummer, Nicky Best, Kate Cowles, and Karen Vines. 2006.
``Output Analysis and Diagnostics for MCMC (CODA)'',
\emph{R News}. 6(1): 7-11.
- \url{http://CRAN.R-project.org/doc/Rnews/Rnews_2006-1.pdf}.
+ \url{https://CRAN.R-project.org/doc/Rnews/Rnews_2006-1.pdf}.
}
diff --git a/man/MCMCdynamicEI.Rd b/man/MCMCdynamicEI.Rd
index 8f9ab82..a2eb9f2 100644
--- a/man/MCMCdynamicEI.Rd
+++ b/man/MCMCdynamicEI.Rd
@@ -153,7 +153,7 @@ Andrew D. Martin, Kevin M. Quinn, and Jong Hee Park. 2011.
Martyn Plummer, Nicky Best, Kate Cowles, and Karen Vines. 2006.
``Output Analysis and Diagnostics for MCMC (CODA)'',
\emph{R News}. 6(1): 7-11.
- \url{http://CRAN.R-project.org/doc/Rnews/Rnews_2006-1.pdf}.
+ \url{https://CRAN.R-project.org/doc/Rnews/Rnews_2006-1.pdf}.
Jonathan C. Wakefield. 2004. ``Ecological Inference for 2 x 2 Tables.''
\emph{Journal of the Royal Statistical Society, Series A}. 167(3): 385445.
diff --git a/man/MCMCfactanal.Rd b/man/MCMCfactanal.Rd
index 83412bf..00d504d 100644
--- a/man/MCMCfactanal.Rd
+++ b/man/MCMCfactanal.Rd
@@ -168,7 +168,7 @@ Andrew D. Martin, Kevin M. Quinn, and Jong Hee Park. 2011.
Martyn Plummer, Nicky Best, Kate Cowles, and Karen Vines. 2006.
``Output Analysis and Diagnostics for MCMC (CODA)'',
\emph{R News}. 6(1): 7-11.
- \url{http://CRAN.R-project.org/doc/Rnews/Rnews_2006-1.pdf}.
+ \url{https://CRAN.R-project.org/doc/Rnews/Rnews_2006-1.pdf}.
}
diff --git a/man/MCMChierEI.Rd b/man/MCMChierEI.Rd
index 6846b91..866a8f8 100644
--- a/man/MCMChierEI.Rd
+++ b/man/MCMChierEI.Rd
@@ -156,7 +156,7 @@ MCMChierEI(r0, r1, c0, c1, burnin=5000, mcmc=50000, thin=1,
Martyn Plummer, Nicky Best, Kate Cowles, and Karen Vines. 2006.
``Output Analysis and Diagnostics for MCMC (CODA)'',
\emph{R News}. 6(1): 7-11.
- \url{http://CRAN.R-project.org/doc/Rnews/Rnews_2006-1.pdf}.
+ \url{https://CRAN.R-project.org/doc/Rnews/Rnews_2006-1.pdf}.
}
\examples{
diff --git a/man/MCMChlogit.Rd b/man/MCMChlogit.Rd
index 3d0cc33..ca9ef9a 100644
--- a/man/MCMChlogit.Rd
+++ b/man/MCMChlogit.Rd
@@ -185,7 +185,7 @@ nu=0.001, delta=0.001, FixOD=0, ...)}
Martyn Plummer, Nicky Best, Kate Cowles, and Karen Vines. 2006.
``Output Analysis and Diagnostics for MCMC (CODA)'',
\emph{R News}. 6(1): 7-11.
- \url{http://CRAN.R-project.org/doc/Rnews/Rnews_2006-1.pdf}.
+ \url{https://CRAN.R-project.org/doc/Rnews/Rnews_2006-1.pdf}.
Diggle P., Heagerty P., Liang K., and Zeger S. 2004. ``Analysis of Longitudinal Data.''
\emph{Oxford University Press}, 2sd Edition.
diff --git a/man/MCMChpoisson.Rd b/man/MCMChpoisson.Rd
index ccb7bfb..2669e8a 100644
--- a/man/MCMChpoisson.Rd
+++ b/man/MCMChpoisson.Rd
@@ -184,7 +184,7 @@ nu=0.001, delta=0.001, FixOD=0, ...)}
Martyn Plummer, Nicky Best, Kate Cowles, and Karen Vines. 2006.
``Output Analysis and Diagnostics for MCMC (CODA)'',
\emph{R News}. 6(1): 7-11.
- \url{http://CRAN.R-project.org/doc/Rnews/Rnews_2006-1.pdf}.
+ \url{https://CRAN.R-project.org/doc/Rnews/Rnews_2006-1.pdf}.
}
\author{
diff --git a/man/MCMChregress.Rd b/man/MCMChregress.Rd
index 54361d0..a98ff14 100644
--- a/man/MCMChregress.Rd
+++ b/man/MCMChregress.Rd
@@ -167,7 +167,7 @@ nu=0.001, delta=0.001, ...)}
Martyn Plummer, Nicky Best, Kate Cowles, and Karen Vines. 2006.
``Output Analysis and Diagnostics for MCMC (CODA)'',
\emph{R News}. 6(1): 7-11.
- \url{http://CRAN.R-project.org/doc/Rnews/Rnews_2006-1.pdf}.
+ \url{https://CRAN.R-project.org/doc/Rnews/Rnews_2006-1.pdf}.
}
\author{
diff --git a/man/MCMCirt1d.Rd b/man/MCMCirt1d.Rd
index e33150d..d64de7f 100644
--- a/man/MCMCirt1d.Rd
+++ b/man/MCMCirt1d.Rd
@@ -195,7 +195,7 @@ MCMCirt1d(datamatrix, theta.constraints=list(), burnin = 1000,
Martyn Plummer, Nicky Best, Kate Cowles, and Karen Vines. 2006.
``Output Analysis and Diagnostics for MCMC (CODA)'',
\emph{R News}. 6(1): 7-11.
- \url{http://CRAN.R-project.org/doc/Rnews/Rnews_2006-1.pdf}.
+ \url{https://CRAN.R-project.org/doc/Rnews/Rnews_2006-1.pdf}.
Douglas Rivers. 2004. ``Identification of Multidimensional Item-Response
Models." Stanford University, typescript.
diff --git a/man/MCMCirtHier1d.Rd b/man/MCMCirtHier1d.Rd
index fb8e1d1..f9b7598 100644
--- a/man/MCMCirtHier1d.Rd
+++ b/man/MCMCirtHier1d.Rd
@@ -251,7 +251,7 @@ The parameters of interest are
Martyn Plummer, Nicky Best, Kate Cowles, and Karen Vines. 2006.
``Output Analysis and Diagnostics for MCMC (CODA)'',
\emph{R News}. 6(1): 7-11.
- \url{http://CRAN.R-project.org/doc/Rnews/Rnews_2006-1.pdf}.
+ \url{https://CRAN.R-project.org/doc/Rnews/Rnews_2006-1.pdf}.
Douglas Rivers. 2004. ``Identification of Multidimensional Item-Response
Models." Stanford University, typescript.
diff --git a/man/MCMCirtKd.Rd b/man/MCMCirtKd.Rd
index a62e585..429bb2b 100644
--- a/man/MCMCirtKd.Rd
+++ b/man/MCMCirtKd.Rd
@@ -206,7 +206,7 @@ MCMCirtKd(datamatrix, dimensions, item.constraints=list(),
Martyn Plummer, Nicky Best, Kate Cowles, and Karen Vines. 2006.
``Output Analysis and Diagnostics for MCMC (CODA)'',
\emph{R News}. 6(1): 7-11.
- \url{http://CRAN.R-project.org/doc/Rnews/Rnews_2006-1.pdf}.
+ \url{https://CRAN.R-project.org/doc/Rnews/Rnews_2006-1.pdf}.
Douglas Rivers. 2004. ``Identification of Multidimensional Item-Response
Models." Stanford University, typescript.
diff --git a/man/MCMCirtKdRob.Rd b/man/MCMCirtKdRob.Rd
index fe68dc8..c2d1667 100644
--- a/man/MCMCirtKdRob.Rd
+++ b/man/MCMCirtKdRob.Rd
@@ -311,7 +311,7 @@ MCMCirtKdRob(datamatrix, dimensions, item.constraints=list(),
Martyn Plummer, Nicky Best, Kate Cowles, and Karen Vines. 2006.
``Output Analysis and Diagnostics for MCMC (CODA)'',
\emph{R News}. 6(1): 7-11.
- \url{http://CRAN.R-project.org/doc/Rnews/Rnews_2006-1.pdf}.
+ \url{https://CRAN.R-project.org/doc/Rnews/Rnews_2006-1.pdf}.
Douglas Rivers. 2004. ``Identification of Multidimensional Item-Response
Models." Stanford University, typescript.
diff --git a/man/MCMClogit.Rd b/man/MCMClogit.Rd
index 514ff79..d44bbd6 100644
--- a/man/MCMClogit.Rd
+++ b/man/MCMClogit.Rd
@@ -146,7 +146,7 @@ Andrew D. Martin, Kevin M. Quinn, and Jong Hee Park. 2011.
Martyn Plummer, Nicky Best, Kate Cowles, and Karen Vines. 2006.
``Output Analysis and Diagnostics for MCMC (CODA)'',
\emph{R News}. 6(1): 7-11.
- \url{http://CRAN.R-project.org/doc/Rnews/Rnews_2006-1.pdf}.
+ \url{https://CRAN.R-project.org/doc/Rnews/Rnews_2006-1.pdf}.
}
diff --git a/man/MCMCmetrop1R.Rd b/man/MCMCmetrop1R.Rd
index 9b95b54..9d2c1d6 100644
--- a/man/MCMCmetrop1R.Rd
+++ b/man/MCMCmetrop1R.Rd
@@ -220,7 +220,7 @@ mode. This last calculation is done via an initial call to
Martyn Plummer, Nicky Best, Kate Cowles, and Karen Vines. 2006.
``Output Analysis and Diagnostics for MCMC (CODA)'',
\emph{R News}. 6(1): 7-11.
- \url{http://CRAN.R-project.org/doc/Rnews/Rnews_2006-1.pdf}.
+ \url{https://CRAN.R-project.org/doc/Rnews/Rnews_2006-1.pdf}.
Christian P. Robert and George Casella. 2004. \emph{Monte Carlo
Statistical Methods}. 2nd Edition. New York: Springer.
diff --git a/man/MCMCmixfactanal.Rd b/man/MCMCmixfactanal.Rd
index 92a2788..bfbdfa0 100644
--- a/man/MCMCmixfactanal.Rd
+++ b/man/MCMCmixfactanal.Rd
@@ -237,7 +237,7 @@ MCMCmixfactanal(x, factors, lambda.constraints=list(),
Martyn Plummer, Nicky Best, Kate Cowles, and Karen Vines. 2006.
``Output Analysis and Diagnostics for MCMC (CODA)'',
\emph{R News}. 6(1): 7-11.
- \url{http://CRAN.R-project.org/doc/Rnews/Rnews_2006-1.pdf}.
+ \url{https://CRAN.R-project.org/doc/Rnews/Rnews_2006-1.pdf}.
}
diff --git a/man/MCMCmnl.Rd b/man/MCMCmnl.Rd
index 5ff37db..6593d62 100644
--- a/man/MCMCmnl.Rd
+++ b/man/MCMCmnl.Rd
@@ -166,7 +166,7 @@ Andrew D. Martin, Kevin M. Quinn, and Jong Hee Park. 2011.
Martyn Plummer, Nicky Best, Kate Cowles, and Karen Vines. 2006.
``Output Analysis and Diagnostics for MCMC (CODA)'',
\emph{R News}. 6(1): 7-11.
- \url{http://CRAN.R-project.org/doc/Rnews/Rnews_2006-1.pdf}.
+ \url{https://CRAN.R-project.org/doc/Rnews/Rnews_2006-1.pdf}.
Siddhartha Chib, Edward Greenberg, and Yuxin Chen. 1998.
``MCMC Methods for Fitting and Comparing Multinomial Response Models."
diff --git a/man/MCMCoprobit.Rd b/man/MCMCoprobit.Rd
index 9ed6844..4639d2a 100644
--- a/man/MCMCoprobit.Rd
+++ b/man/MCMCoprobit.Rd
@@ -146,7 +146,7 @@ that can be used to analyze the posterior sample.
Martyn Plummer, Nicky Best, Kate Cowles, and Karen Vines. 2006.
``Output Analysis and Diagnostics for MCMC (CODA)'',
\emph{R News}. 6(1): 7-11.
- \url{http://CRAN.R-project.org/doc/Rnews/Rnews_2006-1.pdf}.
+ \url{https://CRAN.R-project.org/doc/Rnews/Rnews_2006-1.pdf}.
}
diff --git a/man/MCMCordfactanal.Rd b/man/MCMCordfactanal.Rd
index 7c8ec32..a1d7b02 100644
--- a/man/MCMCordfactanal.Rd
+++ b/man/MCMCordfactanal.Rd
@@ -203,7 +203,7 @@ MCMCordfactanal(x, factors, lambda.constraints=list(),
Martyn Plummer, Nicky Best, Kate Cowles, and Karen Vines. 2006.
``Output Analysis and Diagnostics for MCMC (CODA)'',
\emph{R News}. 6(1): 7-11.
- \url{http://CRAN.R-project.org/doc/Rnews/Rnews_2006-1.pdf}.
+ \url{https://CRAN.R-project.org/doc/Rnews/Rnews_2006-1.pdf}.
}
diff --git a/man/MCMCpoisson.Rd b/man/MCMCpoisson.Rd
index fd23da9..d22c15c 100644
--- a/man/MCMCpoisson.Rd
+++ b/man/MCMCpoisson.Rd
@@ -120,7 +120,7 @@ Andrew D. Martin, Kevin M. Quinn, and Jong Hee Park. 2011.
Martyn Plummer, Nicky Best, Kate Cowles, and Karen Vines. 2006.
``Output Analysis and Diagnostics for MCMC (CODA)'',
\emph{R News}. 6(1): 7-11.
- \url{http://CRAN.R-project.org/doc/Rnews/Rnews_2006-1.pdf}.
+ \url{https://CRAN.R-project.org/doc/Rnews/Rnews_2006-1.pdf}.
}
diff --git a/man/MCMCprobit.Rd b/man/MCMCprobit.Rd
index 40d6037..eb1417a 100644
--- a/man/MCMCprobit.Rd
+++ b/man/MCMCprobit.Rd
@@ -126,7 +126,7 @@ Andrew D. Martin, Kevin M. Quinn, and Jong Hee Park. 2011.
Martyn Plummer, Nicky Best, Kate Cowles, and Karen Vines. 2006.
``Output Analysis and Diagnostics for MCMC (CODA)'',
\emph{R News}. 6(1): 7-11.
- \url{http://CRAN.R-project.org/doc/Rnews/Rnews_2006-1.pdf}.
+ \url{https://CRAN.R-project.org/doc/Rnews/Rnews_2006-1.pdf}.
}
diff --git a/man/MCMCquantreg.Rd b/man/MCMCquantreg.Rd
index e5ee711..4d887a7 100644
--- a/man/MCMCquantreg.Rd
+++ b/man/MCMCquantreg.Rd
@@ -114,7 +114,7 @@ The likelihood is formed based on assuming independent Asymmetric Laplace distri
Martyn Plummer, Nicky Best, Kate Cowles, and Karen Vines. 2006.
``Output Analysis and Diagnostics for MCMC (CODA)'',
\emph{R News}. 6(1): 7-11.
- \url{http://CRAN.R-project.org/doc/Rnews/Rnews_2006-1.pdf}.
+ \url{https://CRAN.R-project.org/doc/Rnews/Rnews_2006-1.pdf}.
}
\examples{
diff --git a/man/MCMCregress.Rd b/man/MCMCregress.Rd
index 5ebd289..9b1c2df 100644
--- a/man/MCMCregress.Rd
+++ b/man/MCMCregress.Rd
@@ -146,7 +146,7 @@ MCMCregress(formula, data = NULL, burnin = 1000, mcmc = 10000,
Martyn Plummer, Nicky Best, Kate Cowles, and Karen Vines. 2006.
``Output Analysis and Diagnostics for MCMC (CODA)'',
\emph{R News}. 6(1): 7-11.
- \url{http://CRAN.R-project.org/doc/Rnews/Rnews_2006-1.pdf}.
+ \url{https://CRAN.R-project.org/doc/Rnews/Rnews_2006-1.pdf}.
}
diff --git a/man/MCMCregressChange.Rd b/man/MCMCregressChange.Rd
index d7da0b2..3803a47 100644
--- a/man/MCMCregressChange.Rd
+++ b/man/MCMCregressChange.Rd
@@ -159,7 +159,7 @@
Martyn Plummer, Nicky Best, Kate Cowles, and Karen Vines. 2006.
``Output Analysis and Diagnostics for MCMC (CODA)'',
\emph{R News}. 6(1): 7-11.
- \url{http://CRAN.R-project.org/doc/Rnews/Rnews_2006-1.pdf}.
+ \url{https://CRAN.R-project.org/doc/Rnews/Rnews_2006-1.pdf}.
}
@@ -189,6 +189,8 @@ sigma.mu=sd(y)
sigma.var=var(y)
## models
+model0 <- MCMCregressChange(formula, m=0, b0=b0, B0=B0, mcmc=100, burnin=100,
+ sigma.mu=sigma.mu, sigma.var=sigma.var, marginal.likelihood="Chib95")
model1 <- MCMCregressChange(formula, m=1, b0=b0, B0=B0, mcmc=100, burnin=100,
sigma.mu=sigma.mu, sigma.var=sigma.var, marginal.likelihood="Chib95")
model2 <- MCMCregressChange(formula, m=2, b0=b0, B0=B0, mcmc=100, burnin=100,
@@ -200,7 +202,7 @@ model4 <- MCMCregressChange(formula, m=4, b0=b0, B0=B0, mcmc=100, burnin=100,
model5 <- MCMCregressChange(formula, m=5, b0=b0, B0=B0, mcmc=100, burnin=100,
sigma.mu=sigma.mu, sigma.var=sigma.var, marginal.likelihood="Chib95")
-print(BayesFactor(model1, model2, model3, model4, model5))
+print(BayesFactor(model0, model1, model2, model3, model4, model5))
plotState(model1)
plotChangepoint(model1)
diff --git a/man/MCMCtobit.Rd b/man/MCMCtobit.Rd
index 8e4dfa8..2cf8a12 100644
--- a/man/MCMCtobit.Rd
+++ b/man/MCMCtobit.Rd
@@ -135,7 +135,7 @@ Andrew D. Martin, Kevin M. Quinn, and Jong Hee Park. 2011.
Martyn Plummer, Nicky Best, Kate Cowles, and Karen Vines. 2006.
``Output Analysis and Diagnostics for MCMC (CODA)'',
\emph{R News}. 6(1): 7-11.
- \url{http://CRAN.R-project.org/doc/Rnews/Rnews_2006-1.pdf}.
+ \url{https://CRAN.R-project.org/doc/Rnews/Rnews_2006-1.pdf}.
Siddhartha Chib. 1992. ``Bayes inference in the Tobit censored regression model."
\emph{Journal of Econometrics}. 51:79-99.
diff --git a/man/SSVSquantreg.Rd b/man/SSVSquantreg.Rd
index 4844438..90375d9 100644
--- a/man/SSVSquantreg.Rd
+++ b/man/SSVSquantreg.Rd
@@ -105,7 +105,7 @@ If it is certain that a predictor should be included, all predictors specified a
Martyn Plummer, Nicky Best, Kate Cowles, and Karen Vines. 2006.
``Output Analysis and Diagnostics for MCMC (CODA)'',
\emph{R News}. 6(1): 7-11.
- \url{http://CRAN.R-project.org/doc/Rnews/Rnews_2006-1.pdf}.
+ \url{https://CRAN.R-project.org/doc/Rnews/Rnews_2006-1.pdf}.
}
\examples{
diff --git a/src/MCMCpoissonChange.cc b/src/MCMCpoissonChange.cc
index aec463e..a089509 100644
--- a/src/MCMCpoissonChange.cc
+++ b/src/MCMCpoissonChange.cc
@@ -858,7 +858,7 @@ void MCMCpoissonRegChangepoint_impl(rng<RNGTYPE>& stream,
// compute marginal likelihood
const double logprior = sum(density_beta_prior) + sum(density_P_prior);
const double logmarglike = (loglike + logprior) - (pdf_beta + pdf_P);
- if (verbose >0 ){
+ if (*verbose > 0){
Rprintf("\nlogmarglike = %10.5f\n", logmarglike);
Rprintf("loglike = %10.5f\n", loglike);
Rprintf("log_prior = %10.5f\n", logprior);
--
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