[r-cran-coda] 20/60: Imported Debian patch 0.11-2-1
Andreas Tille
tille at debian.org
Fri Dec 16 12:11:23 UTC 2016
This is an automated email from the git hooks/post-receive script.
tille pushed a commit to branch master
in repository r-cran-coda.
commit 6ec88ffbf8199539b0e31f6dbd1e0a5a229c7068
Merge: 96a078b 43cd61b
Author: Chris Lawrence <lawrencc at debian.org>
Date: Tue Jul 10 17:25:44 2007 -0500
Imported Debian patch 0.11-2-1
CHANGELOG | 14 +++
DESCRIPTION | 8 +-
NAMESPACE | 4 +-
R/HPDinterval.R | 3 +
R/autocorrdiag.R | 12 ++-
R/batchSE.R | 12 ++-
R/codamenu.R | 231 +++++++++++++++++++++++---------------------------
R/cumuplot.R | 7 +-
R/gelman.R | 6 ++
R/geweke.R | 6 ++
R/heidel.R | 16 +++-
R/jags.R | 33 +++++---
R/mcmc.R | 11 ++-
R/mcmclist.R | 12 ++-
R/output.R | 38 +++++++--
R/raftery.R | 5 +-
R/trellisplots.R | 15 +++-
R/util.R | 31 ++++---
debian/changelog | 6 ++
debian/rules | 1 +
man/HPDinterval.Rd | 6 +-
man/as.ts.mcmc.Rd | 4 +-
man/autocorr.Rd | 2 +-
man/autocorr.diag.Rd | 6 +-
man/autocorr.plot.Rd | 5 +-
man/coda.options.Rd | 7 +-
man/crosscorr.plot.Rd | 4 +-
man/cumuplot.Rd | 4 +-
man/densplot.Rd | 4 +-
man/gelman.diag.Rd | 33 ++++----
man/gelman.plot.Rd | 4 +-
man/geweke.plot.Rd | 4 +-
man/heidel.diag.Rd | 2 +-
man/mcmc.convert.Rd | 8 +-
man/mcmc.list.Rd | 6 +-
man/plot.mcmc.Rd | 4 +-
man/read.openbugs.Rd | 2 +-
man/summary.mcmc.Rd | 4 +-
man/thin.Rd | 4 +-
man/time.mcmc.Rd | 10 +--
man/traceplot.Rd | 4 +-
man/trellisplots.Rd | 4 +-
man/window.mcmc.Rd | 4 +-
43 files changed, 357 insertions(+), 249 deletions(-)
diff --cc debian/changelog
index 1084259,0000000..376e0a9
mode 100644,000000..100644
--- a/debian/changelog
+++ b/debian/changelog
@@@ -1,113 -1,0 +1,119 @@@
++r-cran-coda (0.11-2-1) unstable; urgency=low
++
++ * New upstream release
++
++ -- Chris Lawrence <lawrencc at debian.org> Tue, 10 Jul 2007 17:25:44 -0500
++
+r-cran-coda (0.10-7-1) unstable; urgency=low
+
+ * New upstream release
+
+ -- Chris Lawrence <lawrencc at debian.org> Sun, 15 Oct 2006 01:54:40 -0500
+
+r-cran-coda (0.10-6-1) unstable; urgency=low
+
+ * New upstream release.
+ * Bump R version dependency to 2.2.0.
+
+ -- Chris Lawrence <lawrencc at debian.org> Fri, 4 Aug 2006 17:33:52 -0500
+
+r-cran-coda (0.10-5-1) unstable; urgency=low
+
+ * New upstream release.
+
+ -- Chris Lawrence <lawrencc at debian.org> Fri, 31 Mar 2006 20:23:24 -0500
+
+r-cran-coda (0.10-4-1) unstable; urgency=low
+
+ * New upstream release.
+
+ -- Chris Lawrence <lawrencc at debian.org> Thu, 9 Mar 2006 00:46:20 -0500
+
+r-cran-coda (0.10-3-1) unstable; urgency=low
+
+ * New upstream release.
+
+ -- Chris Lawrence <lawrencc at debian.org> Wed, 11 Jan 2006 04:18:07 -0500
+
+r-cran-coda (0.10-2-1) unstable; urgency=low
+
+ * New upstream release.
+ * Depend on r-cran-lattice.
+
+ -- Chris Lawrence <lawrencc at debian.org> Thu, 8 Dec 2005 10:58:49 -0500
+
+r-cran-coda (0.9-5-1) unstable; urgency=low
+
+ * New upstream release
+
+ -- Chris Lawrence <lawrencc at debian.org> Sun, 8 May 2005 19:20:58 -0500
+
+r-cran-coda (0.9-4-1) unstable; urgency=low
+
+ * New upstream release.
+
+ -- Chris Lawrence <lawrencc at debian.org> Fri, 29 Apr 2005 01:40:38 -0500
+
+r-cran-coda (0.9-1-1) unstable; urgency=low
+
+ * New upstream release.
+
+ -- Chris Lawrence <lawrencc at debian.org> Tue, 28 Dec 2004 12:50:11 -0600
+
+r-cran-coda (0.8-3-2) unstable; urgency=low
+
+ * Rebuild for R 2.0.0.
+
+ -- Chris Lawrence <lawrencc at debian.org> Thu, 7 Oct 2004 23:51:17 -0500
+
+r-cran-coda (0.8-3-1) unstable; urgency=low
+
+ * New upstream release.
+
+ -- Chris Lawrence <lawrencc at debian.org> Sun, 15 Aug 2004 23:52:43 -0500
+
+r-cran-coda (0.8-2-1) unstable; urgency=low
+
+ * New upstream release.
+
+ -- Chris Lawrence <lawrencc at debian.org> Tue, 3 Aug 2004 16:36:27 -0500
+
+r-cran-coda (0.7-2-1) unstable; urgency=low
+
+ * New upstream release
+
+ -- Chris Lawrence <lawrencc at debian.org> Tue, 11 May 2004 01:19:13 -0500
+
+r-cran-coda (0.7-1-1) unstable; urgency=low
+
+ * New upstream release, compatible with R 1.9.0.
+
+ -- Chris Lawrence <lawrencc at debian.org> Mon, 19 Apr 2004 18:51:08 -0500
+
+r-cran-coda (0.6-2-1) unstable; urgency=low
+
+ * New upstream release.
+ + Now requires R 1.8.0 or later.
+ + Ship upstream changelog.
+
+ -- Chris Lawrence <lawrencc at debian.org> Tue, 16 Dec 2003 23:32:27 -0600
+
+r-cran-coda (0.5-15-1) unstable; urgency=low
+
+ * Newish upstream release.
+ * Install to /usr/lib/R/site-library, per new R directory layout.
+
+ -- Chris Lawrence <lawrencc at debian.org> Tue, 17 Jun 2003 19:18:21 -0500
+
+r-cran-coda (0.5-14-2) unstable; urgency=low
+
+ * Depend on r-base-core rather than r-base.
+
+ -- Chris Lawrence <lawrencc at debian.org> Mon, 21 Apr 2003 15:38:02 -0500
+
+r-cran-coda (0.5-14-1) unstable; urgency=low
+
+ * Initial Release.
+ * Renamed source package to not conflict with existing coda.
+
+ -- Chris Lawrence <lawrencc at debian.org> Mon, 7 Apr 2003 20:10:47 -0500
diff --cc debian/rules
index 1f50ad1,0000000..25dcab0
mode 100755,000000..100755
--- a/debian/rules
+++ b/debian/rules
@@@ -1,105 -1,0 +1,106 @@@
+#!/usr/bin/make -f
+# Sample debian/rules that uses debhelper.
+# GNU copyright 1997 to 1999 by Joey Hess.
+
+# Uncomment this to turn on verbose mode.
+#export DH_VERBOSE=1
+
+package = r-cran-coda
+Rpackage = coda
+
+debbase := $(CURDIR)/debian
+debtmp := $(debbase)/r-cran-coda
+debRlib := $(debtmp)/usr/lib/R/site-library
+debRpkg := $(debRlib)/$(Rpackage)
+debdoc := $(debtmp)/usr/share/doc/$(package)
+
+# These are used for cross-compiling and for saving the configure script
+# from having to guess our platform (since we know it already)
+DEB_HOST_GNU_TYPE ?= $(shell dpkg-architecture -qDEB_HOST_GNU_TYPE)
+DEB_BUILD_GNU_TYPE ?= $(shell dpkg-architecture -qDEB_BUILD_GNU_TYPE)
+
+
+CFLAGS = -Wall -g
+
+ifneq (,$(findstring noopt,$(DEB_BUILD_OPTIONS)))
+ CFLAGS += -O0
+else
+ CFLAGS += -O2
+endif
+ifeq (,$(findstring nostrip,$(DEB_BUILD_OPTIONS)))
+ INSTALL_PROGRAM += -s
+endif
+
+get-orig-source: upstream
+upstream:
+ links http://cran.us.r-project.org/src/contrib
+
+build: build-stamp
+
+build-stamp:
+ dh_testdir
+ touch build-stamp
+
+clean:
+ dh_testdir
+ dh_testroot
+ rm -f build-stamp
+ -make distclean
+ -rm -f `find . -name "*~"`
+ -rm -rf debian/$(package) debian/files* core debian/substvars
+ -rm -f doc/html/function.html doc/html/packages.html
+ -rm -f config.cache config.status config.log
+ -rm -rf coda
+ dh_clean
+
+install: DH_OPTIONS=
+install: build
+ dh_testdir
+ dh_testroot
+ dh_clean -k
+ dh_installdirs
++ mkdir -p $(debRlib)
+ /usr/bin/R CMD INSTALL -l $(debRlib) --clean $(CURDIR)
+ #mv $(debRlib)/mcmcpack-* $(debRpkg)
+ rm -vf $(debRlib)/R.css $(debRpkg)/COPYING
+
+
+# Pass -i to all debhelper commands in this target to reduce clutter.
+binary-indep: DH_OPTIONS=-i
+binary-indep: build install
+
+# Build architecture-dependent files here.
+# Pass -a to all debhelper commands in this target to reduce clutter.
+binary-arch: DH_OPTIONS=-a
+binary-arch: build install
+ dh_testdir
+ dh_testroot
+ dh_installchangelogs CHANGELOG
+ dh_installdocs
+ dh_installexamples
+# dh_install
+# dh_installmenu
+# dh_installdebconf
+# dh_installlogrotate
+# dh_installemacsen
+# dh_installpam
+# dh_installmime
+# dh_installinit
+# dh_installcron
+# dh_installinfo
+# dh_installman
+ dh_link
+ dh_strip
+ dh_compress
+ dh_fixperms
+# dh_perl
+# dh_python
+# dh_makeshlibs
+ dh_installdeb
+ dh_shlibdeps
+ dh_gencontrol
+ dh_md5sums
+ dh_builddeb
+
+binary: binary-indep binary-arch
+.PHONY: build clean binary-indep binary-arch binary install
--
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