[skimage] branch master created (now 98bbbdd)
Andreas Tille
tille at debian.org
Fri Dec 23 08:19:50 UTC 2016
This is an automated email from the git hooks/post-receive script.
tille pushed a change to branch master
in repository skimage.
at 98bbbdd Moved to Debian Science team maintenance
This branch includes the following new commits:
new 6fdefb0 Initial framework for scikits.image.
new 09bc858 Add Sphinx documentation.
new bb3cab4 Credit contributors.
new 410ffd9 Pull in LPI filters and add image reading (via PIL for now).
new 11ad0f3 Refactor LPI filtering.
new ae53fbf Fix and test filter API.
new c320c3c corrected path.join in test_lpi_filter.py
new 5455857 Merge branch 'master' of git://github.com/npinto/scikits.image
new 734379e Move data files to common directory.
new 2ff75c2 Move data directory.
new f09d258 Move data directory.
new e246dca Merge branch 'master' of git at github.com:stefanv/scikits.image
new 9053c3e added a color image
new bad8886 added rgb2hsv color conversion
new ac9394f updated __init__.py in color
new 09b4808 Fix paths in colorconv.
new 29c657e Add Hough transform.
new 13195d0 Add Makefile.
new a350786 Correctly label targets as phony.
new f16d08a Update contributors.
new 314f173 Add link to mailing list.
new d728e74 Local licenses override.
new 8b2d916 Add ignores.
new 134b56e Update ignores.
new 67e5f0b Fix houghtf docs.
new 92f7b09 Add numpy-sphinx docs extensions.
new 8c45ca5 Add API generation and fix documentation build.
new 750190e Script to automatically build and upload docs.
new efaeef6 Add license info to numpy sphinx extensions.
new 0452388 Generate cleaner API reference with autosummary tables.
new 6eb6d76 Update license in docs.
new 3e49065 Docs: clean up front page.
new 0acc6f9 Docs: include license directly.
new aa7e72b Docs: add header to table of contents.
new db4fc44 Docs: update install and overview.
new 35a94b7 Docs: add inheritance diagram extension.
new 353dfed Fix docstring formatting.
new e003726 Added forward and inverse 2-D Finite Radon Transform
new 4985925 Minor fixes to patch.
new 557fc9f Remove executable flag.
new 38cb30a Add SURF and SIFT feature file reader.
new 927157e Add projective transformation / homography.
new e32dc80 Fix markup in docs.
new 9c71da3 Add 3rd clause to license (thanks to David Warde-Farley for noticing the omission).
new d0a01f8 Only update gh-pages branch when committing new docs.
new 305a55d Add documentation on how to contribute to the SciKit.
new b4ae379 Merge branch 'homography'
new d9bc7cf Update meta-data for PyPi.
new 70cbc2b Instructions on how to make a release.
new edc0d55 Remember to generate docs when releasing. Also update version in setup.py.
new 64c23ae Grab version number from setup.py for docs.
new b35220f Add Stefan's io.py
new 52f10ea Added a MultiImg class similar to the ImageCollection one, to function as the data structure for multi-image files.
new 8059f43 Add MultiImg to __all__.
new b95c8e3 OpenCV infrastructure largely in place. A test function wrapped: cvSmooth()
new 310d501 wrapped 7 more functions
new 7482165 Remove Image class, and implement Stefan's suggestions.
new 79e0b6c Cleaned up ImageCollection and added tests for it.
new 1a84c71 Now really commit all changes.
new 3205bb1 added unit-tests for existing functions. and prelimenary docstrings
new cb191a2 Make as_grey settable, and provide reload function.
new b19c036 Fixes to MultiImage, added tests for it, plus a test TIF image.
new 33afe60 Move test data to global data dir and fix test.
new f6b0242 Update version to 0.2dev in setup.py.
new 96ab199 Rename collections module.
new f243f91 Update tasks list.
new 8235922 Add collections to io.__init__.
new bbe999d Change mail-archive link to Nabble.
new 2e87575 updated tests to be shorter and OO. Deleted unnecessary data files.
new bcdb7d9 Rename collection test file.
new b25ae26 Rename collection test file and fix it.
new 44679c7 Added dtype keyword to imread plus a test for that.
new 2697ee9 Add dtype parameter to MultiImagei and ImageCollection.
new b7c1dc1 Move docs to correct place inside class.
new 14f588e added cvCornerSubPix and cvResize impementations. Added a bash build script.
new 1076de0 added a bash script for build to holdover until a setup.py solution
new 73f85b0 added cvGoodFeaturesToTrack. Added clone_array_shape function.
new 48fa1b0 Change "Additional Parameters" to "Other Parameters".
new abc2726 Fix link in top corner to always point to main page.
new 03bd107 Add a few docstrings.
new 7175d7c Add support for MPL plots in the docs.
new 735f180 Add only_directives.py and plot_directive.py from numpy.
new 0601ec4 Remove dependency on only_directives.
new d9c206b Set plot directory prefix.
new c8bb8c6 Plot_directive: copy source files to output.
new 80a3667 Shorten and comment show_collection example.
new a47a60f Clean up output of plotting directive: - Do not generate PDFs. - Do not copy image to plots dir (Sphinx copies to _images already).
new 48937fe When pushing docs to github, rename _images to images.
new e1f97c2 Remove completed task: plots in docs.
new 0031412 added a setup.py, moved the data files to the head folder.
new 565b32c Update license phrase for plot_directive.
new d28e3e8 fixed the setup.py, it works now.
new d672f1e Merge remote branch 'colbert/master'
new 95a2e5d Update .gitignore for whole scikit.
new 805d9ff Update setup to build scikits.image.opencv.
new ceeea18 Only build OpenCV extensions when source has been modified.
new 3bc4f31 setup: Remove dependencies -- easy_install doesn't always know when numpy is installed. Also mark package as non-zip-safe.
new 340ec9b Clean up and fix setup.
new 464788a Update build instructions.
new e02a639 Fix references scikits.gpu -> scikits.image.
new d70dfb3 Add setup.py in scikits/image.
new b0f20da Fixed shutil.cp -> shutil.copy; the former doesn't exist on python2.6
new ae310bc Added a more stable detection of opencv library by introducing a new file: _libimport.py
new bcedeb1 Fix typo in opencv setup.
new 4b35af3 Clean up long lines and whitespace in opencv_backend.
new 5be1ecc OpenCV: clean up long lines and whitespace.
new e6454da Allow unit tests to be run when OpenCV is not available.
new f44c246 Added cvFindChessboardCorners
new 0d009dc Added support for cvDrawChessboardCorners
new fd613c6 Merged with trunk
new 4ceebdc Update contributors.
new 350c6b0 Update tasks, link to docstandard.
new c6565e6 Remove "Functions" links/headings.
new 0df0226 Clean up title of API reference.
new 04b1f3b Use same bullet level for functions and classes.
new 20031da Fix up API generation.
new 192c286 Add build dir to .gitignore.
new 9bc93b3 Added cvFind and DrawChessboardCorners - from Holger
new d264049 added chessboard data images, modified install.txt, and .gitignore
new 1e1958b added 4 warping functions. Added CvMat support.
new aa20e90 added "cxcore" to __all__
new 62f6761 Expand OpenCV installation instructions.
new 8ec3abb Fix importing of opencv when libraries are not installed / extensions are not compiled.
new 88886ba Ignore build directory.
new 85874ce Merge branch 'master' of github.com:stefanv/scikits.image
new fd9fadb Update contributors.
new 83e66c5 Merge branch 'docs' of http://github.com/rgommers/scikits.image
new 9025c5d Clean up opencv namespace and imports.
new 96360f5 Remove self-referencing import.
new 8cc9122 Remove task completed by Ralf.
new bf97b0f Clean up scikits.image namespace.
new 96efa2a Docs: In API generator, also recognise extensions.
new 032d0cd Change import to form used everywhere else.
new 6c80fa6 Add documentation for rgb2hsv.
new 1657a4d Implement hsv2rgb.
new 6097565 Add note on loss of precision.
new 844f14b Extract the type and shape checks into a common function.
new 1a4ae96 Add RGB to XYZ bidi conversion.
new 5de5014 Add docstrings for rgb2xyz and xyz2rgb.
new 2e29d25 Update tasks list.
new 94f5eea Add description of the API to the module docstring.
new cf37916 Convert matrix lists to arrays, add RGB CIE color space.
new 060916c Bug fix for imread so images that are already grey-scale do not get flattened.
new 57b73a5 Add NTSC color space.
new 64f65e0 Clean up the colorconv module docstring.
new d7b49ef Remove NTSC color space.
new 3b6a028 Add MANIFEST.in for building source package.
new d277058 Include auto-generated API files in distribution.
new caede77 Add a function to convert from any color space directly to any other space.
new 91b0d63 Remove explicit checks of image type and NaN, and correct dtype descriptor.
new a93e5f9 Add color spaces work to contributors file.
new d753726 Fix _libimport when libcv is not available.
new 8f9e6a9 Unify libcv loader under different platforms.
new 04f01ff Add note on assumed data range.
new e44bb5b added camera calibration from Holger Rapp and fixed a bug in CvMat struct
new c2bfc99 added morphology functions and support for IplConvKernel
new dd5cff6 added cvFilter2D. This supports convolution with an arbitrary filter.
new f2e5b3e verified only float32 is valid for cvFilter2D kernel
new 134c1e0 Update tasks list and release instructions.
new 5a2ebbd Merge with Chris's branch.
new 714a49a Fix bug in libimport.
new c3dd1e4 Add package __version__.
new 06ab076 Merge branch 'color' of http://github.com/rgommers/scikits.image
new d2697df synched with upstream and added integral images
new c2b98b2 added color conversion constants
new d6f5248 fixed camera calibration to 4-vec for opencv 1 support
new e8eccb7 bogus build commit
new 25e9ec8 added color conversion
new e3aa75d Merge branch 'cvtcolor'
new 0b0274f fixed camera calib back to a 5 vec since we support opencv >= 2.0
new 143a22e Add default version file.
new 31f81bf Merge branch 'master' of http://github.com/sccolbert/scikits.image
new 324fe7c added threshold and adpative threshold
new 331125c fixed threshold to add otsu as a kwarg
new 4763cee added threshold and adpative threshold
new 8c6d835 fixed threshold to add otsu as a kwarg
new 67bf66b added pyramid up and pyramid down
new f98d84b added pyramid up and pyramid down
new c0099c3 Add dist to gitignore.
new 36b4d97 Generate new API only when the current version of the library is installed, otherwise revert to pre-generated files. [Patch by Helge Reikeras]
new 3bf33a0 Fix opencv for systems without libraries installed.
new 382fa9c Finally, I've checked in my additions (hopefully) the right way.
new 161ced6 Fixed docstrings. Lines now only span <= 80 chars.
new 018bc62 Fixed dtype docstrings.
new 8b93148 Based on scikits/image/opencv/setup.py
new 8a590bd Added subpackage 'morphology' in setup.py so it traverses there.
new 7badc2c Make "make test" work.
new a04fa0b Add make coverage command.
new 05a4b73 Merge branch 'coverage' of http://github.com/rgommers/scikits.image
new dd6b3ee Add some docs for 'make coverage'.
new 43cc6b9 standardized the handling of out arguments, replaced assertions with exceptions.
new 592c579 1/3 of the doc-strings complete. Doc decorator created and added to a _utilies.py module.
new d3e5fae this is the actualy commit for _utilities.py
new 070e945 changed how the doc decorator works. now it only adds the url.
new dc55ae4 fixed an assertion that was preventing a slice of an array from being used. However, this may open the door for segfaults for severely non-contiguous data. I'm not too sure.
new 22ae88b Add palette images
new 8077c2b Fix imread so palette images are converted to grayscale or RGB images
new 5683338 Add test for palette_is_grayscale
new 727305b Added some more docs and fixed up a few warts in the process.
new a6ad741 Minor changes to Tony Yu's palette_is_grayscale.
new 9bec0ef Plugin framework for image I/O.
new 430b2d3 more docs
new 6526e06 Finished the docs, and caught a couple more warts.
new 211be9f Merge Chris's cv docs updates.
new ff419dc Merge branch 'docs' of http://github.com/sccolbert/scikits.image
new bec2da8 cv: Fix function signatures.
new 5d6624a cv: Add references section for adding URL to docs.
new 2256fa5 cv: Update Cython generated C-files.
new 4dcde1d Add new docs API files.
new a7b17bb Add tests for IO plugins.
new cdb1a15 Restore plugin registry after testing.
new e7d6875 Document _call_plugin.
new 940f318 Remove plugin functionality from io.py. Implement setting default plugins and querying the plugins available.
new 4d21eb2 Merge branch 'master' of http://github.com/tonysyu/scikits.image
new 0c80e47 Add Tony as a contributor.
new d6a4ec8 Check that scikit is built before generating docs for upload.
new f1dc10f docs: Backup generated files before switching to docs branch.
new 3f9678c Merge plugin branch.
new 2eb28f4 Add QT4 image display plugin.
new bdcce91 io: qt4 plugin: allow multiple images to be displayed. Keep track of Windows so that they don't get deallocated before they are closed.
new 91cea8d Add Chris's plugin utility converter and wxpython plugin.
new c52453e Rather use global than list to track app.
new 4df00cb io: qt4: Use prepare_for display. Add demo snippet.
new 308e76f Fix q4thread typo.
new 6b7aebb Reorganise plugin infrastructure.
new 27a516c Second part of I/O infrastructure reorganisation.
new ebe36d9 Import PIL plugin using load_plugin.
new fdea274 Added the beginning of the gtk imshow plugin. And added the generic window manager.
new 5a17a20 cleaned up the gtk plugin and window manager. rock and roll!
new 6f18eed cleaned up the window manager, and modified the qt-plugin to use it. also changed the order of try: except: when trying to load the plugins, to make sure that one gui toolkit doesnt trample the pyos_input hook of the other.
new 819150e removed the wx_plugin until which point wx supports pyos_inputhook
new 03b99a8 removed the block= kwarg in the qt_plugin that i missed previously
new c118add Add shortest path algorithm. Refactor Cython build.
new 11b2296 Merge branch 'io' of git://github.com/sccolbert/scikits.image
new edaa44b Minor text cleanups.
new c0ad658 Add tests for prepare_for_display.
new 00cf3a8 Fix the description of make coverage.
new 25701ae Fix link to issue tracker.
new 8f51081 Remove note about patent issues with marching squares, was resolved on list.
new bcea97c Add tests for window manager.
new 8f7e3bc Correct calling of coverage plugin, no spurious output anymore.
new 0f2474a Fix subtle rstrip bug.
new 3dc89ed Fix subtle rstrip bug.
new 7770e39 Fix subtle rstrip bug.
new 447397d Describe plugins using .ini files, so that we don't need to import them to know their capabilities.
new 502351d Merge branch 'coverage' of git://github.com/rgommers/scikits.image
new 1822e07 io: Clean up 'available' according to Chris's review.
new 496f1f2 Merge branch 'io'
new 02d8bc5 io: Allow plugin names that don't end on _plugin.
new 48dcafd Merge branch 'spath'
new 492ee35 doc: Add analysis API.
new 874eb2f build: Fix c extension.
new 6f7697a spath: Fix indexing errors.
new 899497d io: Add plugin descriptions.
new 1e264b6 spath: Allow importing even when not compiled.
new 573f103 io: Track meta-data on plugins.
new 0a1056b io: Add table of available plugins to module docstring.
new 50a2946 analysis: Add as subpackage.
new e6ceb81 docs: Update API.
new eec6a77 io: Combine use_plugin and load_plugin.
new 6f4c6f0 doc: Update API.
new 6eabb7b Update tasks.
new 5ad25a3 io: Add plugin .ini files to setup as data files.
new da8ff12 beginning of qt fancy imshow
new b00566a fixed event flow order for fancy imshow
new 663738a added the beginnings of the color mixes, and improved fancy imshow for qt
new 51a1832 io: Add setup files for colour mixer.
new d89e577 io: Document colour mixer.
new 9ab169a io: Add tests for colormixer.
new ab90617 Rename analysis -> graph.
new cc9f2ff Remove Cython-generated C-files.
new 5033205 doc: Update github push script.
new 0216fb6 Modified the fancy imshow widget, and added brightness control to the mixer.
new eed8d6f fixed a bug in slider signal connection.
new 186eee3 added slider value labels and fixed their layout a little.
new 5b3ff53 fixed an alignment centering bug.
new f4a0421 added HSV operations to the ColorMixer and fancy imshow.
new 93fb7de Finalized HSV support in the color-mixer and fixed a few subtle bugs therein. Updated the fancy imshow widget some more.
new 13a7b53 Add list of build requirements
new efbaa84 added histograms to fancy imshow and colormixer. Unfortunately im suffering from circular references when the window is initializing. It doesnt crash, but it throws a few exceptions... A refactor is in order.
new 00debb6 added sigmoidal gamma
new e21ab2e progress commit
new ae9f9cc further progress on the refactoring of the fancy imshow.
new cf19f11 added regular gamma to the mixer, refactored more of fancy imshow.
new ca051a3 Finished the refactor of the mixer and the histogram. Performance is now much better, a bunch of bugs are gone, and it shouldnt throw anymore exceptions.
new c4f75b7 fixed the gamma correction in the color mixer.
new 983ebd4 updated string formatting for slider labels.
new 384f801 Made it so that aspect ratio is maintained on imshow and fancy imshow for the qt plugin.
new 775ff60 Align image to top so that pixel tracking is accurate.
new cc2b9ae fixed mouse tracking to not go out of bounds. Added save-to-file.
new ac8dadf added save_to_variable functionality.
new c10f3a8 Add image stack.
new 03129f7 Added save to variable function using io.push() functionality.
new 5bbc0f8 removed a dangler.
new 0cc86e6 Merge branch 'io' of git://github.com/sccolbert/scikits.image into io
new a99339f Add basic tests for _histograms.
new ec5bba7 io: Fix Qt import accidentally removed.
new 3c3fa01 io: Combine qt imports.
new 9bc8fed Update tasks list.
new 0733f0d Add scikits.image.test.
new 992d9df Add image viewer script.
new 57a3152 Remove `imsave` from matplotlib until fixed in their source.
new ce719af Add user guide and documentation on plugins.
new 1148a47 io: Add _app_show for matplotlib plugin.
new 7f28339 Merge branch 'doc' of git://github.com/tonysyu/scikits.image
new 11c7987 doc: Update dependencies.
new a51aa32 Add scripts for launching without setuptools.
new a3737fa Added tests for colormixer and histograms. Moved tests up a directory level because nosetests doesnt see tests in a directory beginning with an _ (_plugins/). Moved fancy imshow to its own module scivi.py
new 196ab75 first go at multithreading the mixer.
new 4beb9eb added better logic to the thread dispatcher.
new 67e0cb0 Merge branch 'io' of git://github.com/sccolbert/scikits.image into io
new db7583b io: Move plugin tests to io/tests.
new a6de140 added try except to deal with missing multiprocessing.
new 2ac29d6 Merge branch 'threadingio' of git://github.com/sccolbert/scikits.image into io
new 625291f added division decorators to cython. Improved how data gets chunked up.
new 6c1bbc0 Merge branch 'threadingio' of git://github.com/sccolbert/scikits.image into io
new c539a02 io: Fix one more instance of cdivision.
new d9f6249 io: Throw exception when qt plugin can't be loaded.
new d8709bd io: Add imsave using PIL.
new ca7e337 Merge branch 'io'
new f988c4a docs: Update API.
new 0e96a75 Update tasks.
new 30048f2 Fixed a small but serious bug in cvCvtColor.
new 152c620 finished the lut tables
new 84f9c60 added cvUndistort2 and its tests
new 2f9c47e Merge remote branches 'colbert/master' and 'colbert/luttables' into chris_merge
new 01266b6 doc: Update API.
new 38e649b Set version to 0.2.
new a78d6c7 Update development status to 'beta'.
new 06cf2ee setup: Add MANIFEST.in.
new 8099c35 Revert accidental change out of version.py
new 166fa74 Document problem with 'python setup.py sdist upload'.
new 1b501c8 setup: Only check for new Cython file if Cython executed successfully.
new 9d64d8d setup: Fix Cython build.
new e872f09 Fix MANIFEST.
new bf9f704 setup: Fix author field not to be tuple.
new 1fc7a2f Release 0.2.1 to fix build issues.
new 2939478 Update release info now that setup is fixed.
new 80ea81f Update tasks.
new 14975cb Rewrite as_grey property without enhanced property decorators to be python 2.5 compliant
new 44c6c19 Fix with statement for 2.5.
new 0f604fa io: Add null-plugin to simplify testing.
new f9cf776 io: Fix doctests.
new 0011fd1 io: Remove unneccesary import.
new 816640e Merge branch 'compatibility2.5' of git://github.com/tonysyu/scikits.image
new bd3198f Update TASKS.
new 0593e90 Fix MANIFEST.in after report by Lev Givon.
new 0bb264c Set version to 0.2.2 to release a bugfix sdist.
new 5430842 Clean up setup script.
new b022229 Setting version to 0.3dev.
new c31d930 Update TASKS.
new f7f294c Regression tests written for morphology
new 56056cb Regression tests for morphology
new 3727750 Merge branch 'damian-morphology' of git://github.com/deads/scikits.image into damian
new 870d2ef morphology: Wrap long lines.
new 81c4019 Add Zachy Pincus's trace_path routine for finding a low-cos path between a given start and end point.
new a0b2430 trace_path: PEP7 fixes.
new dc6715b trace_path: Add tests.
new e3b5e09 trace_path: reformat docs
new 4931094 Add Zachary Pincus to contributors list.
new b22d10e spath: Remove debug prints.
new 19b5973 worked on prettying up scivi.
new 04fcbb0 Restore version file.
new dbbfb6e spath: Add Cython definition file to allow external use.
new 6211279 docs: Multiple columns in API reference.
new 5f4d939 docs: Update API.
new 7dbbf8b Cython division fixes. Ignore version file after build.
new ec70fda docs: Add project title to header.
new b0d2868 docs: Fix typo.
new bd79e37 Add easy way to grab a logger.
new 65d6ab4 docs: Update api.
new 2ebfcdc Add docs for logger.
new 1b53c9d added cvFindExtrinsicCameraParams2 and cvWatershed
new ae4bd34 added cvFloodFill and cvMatchTemplate
new 17edd0c Modify _build.py:cython() to be cleaner:
new 4741c11 Add fast binary heap classes (from Almar Klein)
new 6f39426 Added classes for minimum-cost-pathfinding through n-d arrays.
new 8b2a8b5 Rewrite spath.shortest_path to use new mcp classes
new ad141b6 Finish commits of changes to graph: __init__ and setup and remove old cruft.
new 07fbf60 Fix heap.pyx to work when infinite values are pushed.
new b7706e6 graph: heap: Cast known integer after division.
new 93c9037 graph: spath: Fix documentation indentation.
new 83efa5f morphology: Clean setup.
new bc8ab59 graph: mcp: Clean up long lines. Fix tests.
new 29d6046 graph: Fix typo in heap docs. Wrap long line.
new 56a5cad Performance fix for heap; correctness for _mcp
new 4a0e4e2 Oops: actually fix heap performance problem...
new 1cde37a Merge speed fixes to heap.pyx from Zach.
new 315b133 Update links to CellProfiler code.
new 91ca44b Add Zachary's freeimage wrapper. Fix Ctypes loader to use NumPy.
new bb9ee08 Add description file for freeimage plugin.
new 794402b Add imread and imsave wrappers to freeimage plugin.
new 0063993 Wrap long lines in freeimage plugin.
new 46d3c26 In freeimage plugin, fix order of parameters to 'write'. Provide colour images to 'write' as CxMxN arrays.
new d082774 Add ctypes API for freeimage plugin for use on 64-bit platforms.
new 9c20fd0 In freeimage plugin, use array_interface for array construction.
new 49c03eb Try to load both libfreeimage and libFreeImage.
new 0320815 Fix freeimage loading via array interface.
new 81b3359 Use c_void_p to handle (*BYTE) in freeimage plugin.
new 1319984 In freeimage plugin, set DummyArray to writable, use correct dtype.
new 01dca4e Found shorthand for constructing dtype str (thanks, Zach!).
new ce4d48d Update links to OpenCV docs.
new 2c11c74 Clarify dependencies.
new df431c2 Give explicitly the git clone command in the installation notes.
new 03b53f8 Add gitwash documentation.
new bd7a15e Add imshow to PIL plugin.
new 3c14b96 Allow PIL plugin to read grey-level images with alpha layer.
new 7c1c951 More accurate docstring for imread.
new cd48712 Merge branch 'master' of git://github.com/sccolbert/scikits.image into chris
new 59d86c7 DOC: Add CellProfiler relicensing announcement.
new b8cb9ff ENH: Refactor ImageCollection to allow more general file loading schemes.
new 5179113 DOC: Add place to document API changes.
new dd5f002 ENH: Add imread_collection to plugin framework.
new 28f5b9f JT: added PyFITS plugin, tests and data
new 57ed210 JT: various minor comments from Stefan
new 09268cc JT: more minor comments from Stefan
new ff55f6f JT: fix an import when pyfits is missing
new 30b4ff2 Fix freeimage_plugin.imsave
new 9ea3962 Ignore vim swap files.
new d3a4d3d Fix link to api changes in docs.
new 95d8830 Merge branch 'master' of git://github.com/luispedro/scikits.image
new 7d65b1d Modify numpy cimport order to satisfy Cython 0.13.
new 495d214 BUG: Hough failed on provision of angles argument.
new c288052 Update Git docs with link to Fernando's post.
new 7784307 More updates to dev guidelines based on Fernando's post.
new 325b59c palette support for saving 8-bit greyscale images
new 06f8f39 API: Remove dtype parameter from imread and collections. Remove as_grey from collections.
new 7de4541 ENH: Add rgb2grey.
new f9537e9 ENH: Add a free standing test for freeimage.
new 20f2819 Merge branch 'io_cleanup'
new fa42d5f Merge branch 'imagecollection'
new 0bf6895 Merge branch 'james_turner-fits_plugin'
new 20ab4cd ENH: Update Cython imports.
new 23a4d3d BUG: PIL tests should set plugin at setup.
new 082798d DOC: Add explanation to test plugin.
new ff02f4c BUG: Correctly handle images with an alpha channel
new 5df1191 BUG: Build fixes for Windows 7, Python 2.6 [patch by Amit Aides].
new eb1bb0a DOC: Note that grey-level morphological operations only support flat structuring elements [provided by Ingrid Fabris-Rotelli].
new 957c6cb BUG: Fix Windows 7 build fix.
new 728a8e0 DOC: Update dependency to Cython 0.13.
new f5461aa ENH: Find libcv.so.2.1 in addition to just libcv.so.
new f8a3ea4 DOC: Wrappers are now for OpenCV 2.1.
new c11a226 ENH: Fix cvUndistort2 according to OpenCV 2.1 calling convention.
new 31e1edf ENH: Add test for cvUndistort2 with new intrinsics provided.
new bf6dd96 ENH: Add parameter checking for cvCalibrateCamera2.
new 984851e ENH: Add opencv wrapper for FindFundamentalMat.
new 499fab1 BUG: Include default parameters for cvFindFundamentalMat.
new 4cd7acc BUG: Fix status shape in cvFindFundamentalMat.
new d243713 BUG: OpenCV checks shape of memory provided.
new 8ace322 BUG: Compare ``method``, not ``status``.
new 3219025 BUG: Status should be 2-dimensional.
new b34f16d ENH: Add test framework for cvFindFundamentalMat.
new 077fae2 DOC: Note about Ubuntu + cv + Atlas problem.
new 95ac9e8 BUG: Remove status parameter that causes OpenCV 2.1 to complain.
new 6c6658b BUG: Fill status with zeros. Squeeze dimensions of F.
new 1d339c0 ENH: Complete test for cvFindFundamentalMat.
new e930e46 DOC: Better document test for cvFindFundamentalMat.
new 0f412ab Merge branch 'OpenCV_2.1'
new dc79f81 Merge branch 'cvFindFundamentalMat'
new 171bd18 fix infinite-handling in mcp and precision issues in heap
new 0994d80 allow negative-cost elements
new 6108461 add tests
new 8db2b73 Update tasks.
new 84781fc Fix Cython build on Windows [patch by Christoph Gohlke].
new 9ff324b Merge branch 'mcp_infinite' of ssh://github.com/zachrahan/scikits.image
new b7f1386 Constant time per pixel median filter
new ac5b70e ENH: Allow stand-alone execution of ctmf test suite.
new 9d9cce4 ENH: Remove unnecessary C defines.
new bf89088 ENH: Stylistic changes.
new 056208c DOC: Update median_filter doc to numpy format.
new 2f11eea ENH: Clean up whitespace and remove class in ctmf tests.
new 10dd45d ENH: Execute median filter without mask array by default.
new 386ad23 DOC: Give credit to Lee Kamentsky and Thouis Jones.
new ea3b46d Merge constant time median filter by Lee Kamentsky and Thouis Jones.
new e45b6e0 BUG: Fix building under Python 3.
new 8c73f52 BUG: Fix mcp tests.
new b47ae98 BUG: Cython build: Open file correctly under Python 3 [patch by Nadav Horesh].
new 4760fc3 BUG: Python 3 compatibility fixes by Christoph Gohlke.
new 082ff69 BUG: More Python3 fixes by Christoph Gohlke.
new 694fe20 BUG: Do not break on import if PIL isn't available.
new eab0bd6 BUG: Fix filename handling under Python 3.
new 0fb8156 BUG: Do not rely on PIL by default.
new 71631bf ENH: Also scan /home/stefan/lib for freeimage.so.
new 8f8726f DOC: Update tasks.
new 05f0015 BUG: Fix sed in docs build script.
new 6905ed2 Merge Cell Profiler Canny edge detector
new 22f983c Add init entry so importing works right
new 2961147 Format for pep8 compliance, improve documentation, and make mask optional.
new 58b632a Remove smooth.py for now
new 1ce0936 Update docs and convert convolution to ndimage sobel function
new e60d388 Converted logical ops to bitwise ops and made cosmetic changes wrt pep8 compliance
new 97c2a71 DOC: Update tasks.
new f6f14ad ENH: morphology: Add connected components labelling.
new 5264e9d Fix docstrings and one more pep8 issue
new f66043c Merge remote branch 'dfarmer/dfarmer-filters-canny'
new 97806c7 DOC: Add Dan Farmer as contributor.
new 520c54f ENH: Add faster numpy hough version as well as a Cython version. Add appropriate setup.py files to build the Cython module. Fix hough tests.
new 924451f Update Chris's contribution.
new 8d74f9c BUG: Import PIL.Image correctly. Skip tests if not available.
new 7833ace DOC: morphology: Document connectivity in ccomp.
new 6156182 Merge branch 'ccomp'
new 8a35b3f Added CellProfiler sobel and prewitt functions.
new f3dd496 Fixed PEP8 and added numpy documentation.
new cbb84d5 ENH: Minor clean-ups to edge-detection patch.
new 887ca31 DOC: Add Pieter Holtzhausen as a contributor.
new cef53c1 Merge branches 'holtzhau_edge_filters' and 'ccomp'.
new 430821a BUG: Correctly convolve integer and floating point arrays.
new 340d92c Fix memory leak due to not properly using __cinit__ in heap classes
new c2664f0 Fixed (?) segfaults on 64-bit platforms
new f09c120 ENH: graph: Fix typo.
new c805996 Merge remote branch 'zach/FreeImage64'
new bff3cc9 Modified load_library for windll
new 5942566 Fix indentation error that broke linux support
new c853348 Fix more indentation errors
new 0f43856 Remove debugging text
new 13d1a3d New module for total variation denoising, for 2D and 3D arrays.
new edbb4dc Moved the tests of tv_denoise to filter/tests
new a0f7eb5 documented the input dtype in tv_denoise
new 2d4fc6e Merge remote-tracking branch 'emmanuelle/tv_denoise'
new ceb2e41 DOC: Update contributors.
new 76cfe18 Merge Dan Farmer's Windows platform updates to the NumPy ctypes library loader.
new 06b0dda DOC: Update contributors.
new 65021f4 Remove print statements
new 637a568 Fix order of keyword arguments to _tv_denoise_2d.
new 680a89e Make test_tv_denoise_2d more strict.
new 8c0d798 Reorder eps and weight keyword args to tv_denoise
new 0379e52 Merge Tony Yu's tv denoise fixes.
new b32bd12 Allow test_sift to be ran independently.
new b8149ac _hough_transform: Type fix.
new de74356 Added destination to Makefile and fixed doc system
new 99029c5 Fixes
new 5b689c7 Removed followed files
new de4a853 push script fix
new f3406bc Push script excludes all git* fix
new 22c5d7c Removed generation
new 93249f2 Script to checkout docs repo and commit (ipython based)
new fab15a5 Makefile option for gh-pages generation.
new 964de3d Use matplotlib's plot_directive.py for Sphinx documentation.
new f763b6c Fix import in apigen.py, which fails when other scikits are present.
new 6f8da31 Change Makefile so that autogenerated API docs are removed with "make clean".
new 12b51ba Replace plot_directive.py with copy from matplotlib's trunk.
new aef8d50 Fix lengths of restructuredtext section headers in docs.
new 676b911 Update the numpy sphinx extensions from http://projects.scipy.org/numpy/browser/trunk/doc/sphinxext/
new aa32054 Updated the documentation repo location to the offical destination.
new 2f0d639 BUG: Windows does not have round in math.h
new 8ff5863 Update contributors.
new 01e4fcd Tag now a prettier version number from setup.py
new 732b380 Merge documentation build system fixes by Pieter Holtzhausen and Tony Yu.
new 2f503ea Update contributors.
new fdc2ae8 DOC: Update coverage instructions.
new 886a233 ENH: Add default target for docs Makefile.
new 7b75449 ENH: Ignore .coverage output.
new 6f57b4b DOC: Add new project URL to setup.py.
new f9c4101 DOC: Add gitwash generator code.
new 6bcebd1 DOC: Use the correct suffix when building gitwash docs.
new 5fbecf2 DOC: Add more prominent link to gitwash docs.
new e57f7f0 DOC: Rewrite project overview.
new d025016 DOC: Update gitwash generated docs.
new 7eed211 TST: Test both Cython and Python versions of the hough tf.
new 39e81a7 DOC: Add missing space.
new fb8efcf Add source related to generation of functionality coverage.
new bb03488 Modify TASKS to include pointer to coverage docs
new bddde92 Remove outdated push_github script.
new 070e7c9 Colored missing text in table
new 2646d98 DOC: Save plots with tight bounding boxes.
new c2b948b DOC: Setup plot_directive.
new a55d426 DOC: Update hough docstring.
new 319081d Remove outdated reference to 'load_plugins'
new d061967 Convert from CRLF line endings
new fc17f50 Rework exception handling logic in freeimage_plugin.py
new 12c1829 Fix logic error in _load_library
new f64ddb1 replace TemporaryFile with NamedTemporaryFile, for compatability with later python versions
new 2409bbc Only call MultiImage if PIL is available to ensure nose handles this case properly
new 1a48914 Remove temporary files
new 26402a7 Replace old raise form
new 3bb4965 DOC: Also copy plot files to html doc output.
new 56fe676 ENH: Add hough transform plot.
new 8ceb250 Return correct type for as_grey with freeimage
new 8f16ca1 Pass as_grey to the imread plugins
new e7a69bb Skip pil_plugin tests if PIL isn't available
new b5c85b6 Don't rely on pil for plugin_priority test. Skip test if neither pil or freeimage are available
new f049cfc Warn user when Cython can't be imported
new d734162 Add complete matlab image API
new 92ce731 Change look and feel of table, add better handling of table columns
new e2655ec ENH: Update gitignores.
new 435a2da Revert "Pass as_grey to the imread plugins"
new a595f26 Remove as_grey from plugins
new b24f2a0 Merge Neil's fixes, including those for py3k.
new 3eadba0 Update contributors.
new 16e5456 DOC: Retheme docs, credit IPython authors.
new 050f83b GStreamer and opencv player versions.
new 8f0f253 Fix docstring so Sphinx doesn't complain about indentation.
new cba0ec6 Remove index.html template and use markup in index.txt instead.
new e7ad3d5 Add version number to index page of docs
new 5d8210c Seeking in video
new 1f31141 Format front page so it looks similar to old template.
new 9b55c5d Added video duration routines
new 93744fc Merge Tony's documentation enhancements.
new 7019915 DOC: Shrink table for better layout.
new 43cd4b6 DOC: Update contributors.
new 9c1c1fa DOC: Turn gh-pages into phony target.
new 1cff83b DOC: Fix repo address in installation instructions.
new 07ef205 DOC: Minor cleanups. Strike through completed items on TODO list.
new 64dc218 DOC: Deploy current docs to scikits-image.org/docs/dev.
new 2303118 Change default css to include coverage bar formatting
new 7d79a3f Bug fixes and documentation writing
new ad0c201 Merge coverage states into main .css.
new c425cae DOC: Update contributors.
new b48e580 DOC: Add coverage table to Makefile.
new c3ee8f5 DOC: Complete coverage bar.
new 92f9987 DOC: Ignore generated coverage table.
new be28bb9 First working version of radon and iradon
new e26089b Implemented various filters and interpolation methods.
new 494be9f Test and image dimension checking
new b492295 Tutorial
new 03c6812 Created Video base class and handle backend import errors.
new ed6f452 Tutorial edit
new 39da9f9 Phantom image example for radon transform
new ae2b253 Use absolute path for scikits.image.data_dir.
new 2425209 get_collection method interfacing ImageCollection
new c9ec1af Docstring mods
new c1c5be1 Docstring optional
new 3e8cc62 Tutorial 80 line length
new 72fc24f Fixes
new a79dbc7 Probabilistic hough transform
new 24e3ee7 Testing different accumulator clearing on good lines.
new 4718e6e Merge
new 055358b Hough tutorial
new 54a9dea Formatting
new fb45730 Tutorial work
new 65be497 Tutorial, adjusted threshold
new 06f91af Improved line detection
new 9ed8232 Added a settle count for similar angles to resolve themselves
new e5ddf85 Debugging similar angles
new 9cd072d Merge
new 6df94d2 Tutorial save figs
new f5225d2 Fixes
new 8ac2fc1 Modified README to point to the new github repo. Mentioned in install doc that it is possible to download a zipball without having git installed.
new 391f685 Modified README to point to the new github repo. Mentioned in install doc that it is possible to download a zipball without having git installed.
new fa422d5 Correctly detect missing FreeImage.
new 272fbbe Known errors during build for Windows.
new ed011f9 Removed unused definition
new a146e80 Fixed broken plot_directive.py so to build the doc.
new 45b1f56 Merge branch 'master' of https://github.com/scikits-image/scikits.image
new 805be0a Name of new github repository in setup.py of submodules
new e7808df Update license to credit team.
new 3722666 MISC: Clean ups in TV
new 5f6f10a Merge pull request #18 from GaelVaroquaux/master
new bcd7069 Merge pull request #17 from emmanuelle/change_repo_name
new 3a1ef10 DOC: Describe usage of different types (first draft).
new 7032e17 Initial commit with working logo generator
new 2f897dc Initial implementation of Histograms of Oriented Gradients
new 00fa047 DOC: Fix typo in data types description.
new d30beba Use only snake image.
new 6ab6aef Adjust orange snake brightness. Add --no-plot flag.
new acd5a59 Add SVG logo with text and Makefile to convert to png.
new b9d8c64 Match scikits.image directory structure.
new 2b7d18e Merge Tony's logo generator.
new 29b37d4 Match logo filename used in website.
new 877ca68 Also produce a scaled down version of the logo.
new 0fd5330 Add logo to generated documentation.
new 2d21a51 Merge branch 'logo'
new a97a352 DOC: Note that data type document is still preliminary.
new 6f7f9b4 Merge branch 'dtype_info'
new 207f866 pep8 + addressing some of Stefan's comments
new 55c77b5 replaced gradient operation with np.diff
new 0d50582 replaced arctan with arctan2
new e5a211c DOC: Update Tony's contributions.
new e70cd1a DOC: Update release instructions.
new b56c370 Add summed area table, using Nicolas Pinto's suggestion for a pure Python implementation.
new b2be624 DOC: Update sat docs after feedback from Brian Holt.
new 905f279 Merge branch 'summed_area_table'
new 88fd5c7 Merge radon transform by Pieter Holtzhausen.
new d6f282a merged upstream master
new 19b8deb use sat_sum for performance improvement
new ac0fc3a Fix display of coverage bar
new 5281e75 Merge pull request #22 from mandli/master
new 5ba4ebf ENH: Rename sat and sat_sum to be in-line with CV community convention.
new cce3d7b Example generation from scripts, taken from scikit learn
new 2bd79e7 DOC: Fix order of parameters passed to cp
new cf9c8e7 DOC: adjust default table styling for a cleaner look
new 70b39b8 DOC: make index.html the master doc
new 92eec12 DOC: fix copyright
new 4174d5f A few fixes: give credit to scikit-learn guys, fix examples...
new 3b1fb71 ENH: Expose data module. Currently just provides scipy's lena in a more convenient location.
new 707c4c8 DOC: Update tv example to use data module. Rewrap some text.
new 42ca806 Merge Emmanuelle's work on documentation examples / build.
new f3b8aec Merge pull request #24 from tonysyu/doc_tweaks
new 9fb46e1 Add Cython homography implementation. Not well optimised yet.
new 41ed86d Convenience functions to load example images.
new 8da0ea5 ENH: Minor clean ups of data loader.
new fff4d5c DOC: Update contributors.
new 3b713d6 Merge branch 'data_loader'
new 167b43f ENH: fast_homography: 20x speed improvement.
new 69ae2f0 BUG: fast_homography: Fix mirror mode.
new 2d94a27 Fix mirror mode. Update docstrings. Update tests
new 2b71fd9 BUG: fast_homography: Fix constant mode.
new 3df7df2 Import fast homography as transform.fast_homography.
new ab19017 Merge radon/fast_homography.
new b65af27 ENH: Use fast homography instead of PIL's rotate. Minor cleanup.
new 5fc3d85 Add drawing module with Bresenham line.
new 68c61c0 ENH: Use new draw module to construct HOG image.
new 78f16f4 pep8
new 604296b removed dead link form canny help string
new 24d771d check if input for canny is 2d array, test for error raise.
new fcf4c41 somewhat sensible default values for canny edges
new 8e33b17 pep8, removed unused import and variables
new 089485f new canny edge tutorial location
new b0798eb ENH: Minor setup.py cleanups.
new e6f660d rank filter asserts input is 2d
new dfad24e rank filter has radius 2 by default. radius 1 fails ?!
new 4fab810 remove unused imports, avoid from x import *
new 82212dd pep8
new e9efbbc adjusted default value test to new default values... what does that test do?
new 0cec5fc in median filter, rename input data to "image"
new a2d939a BUG: Remove numpy 2 usage of .astype.
new dca93a2 Merge pull request #33 from amueller/median_filter_minor
new 5534998 Change default angles in iradon (as many angles as projections) + a few doc fixes
new 1e3ad55 More tests on radon and iradon
new f579d8f Merge branch 'stefan-radon'
new dff2ee7 ENH: Add dtype converters.
new edfb826 DOC: Fix dtype converter docstring typos.
new 5ec5c55 BUG: Fix typo in dtype converter integer list.
new 34b2000 DOC: Warn about OpenCV deprecation.
new 2c0f48c TST: Make LPIFilter tests operate on a smaller image, since they take long to execute, and cameraman.png is now bigger than before.
new 15e65fa DOC: Move radon example to gallery.
new 52959ac DOC: Use correct location of blank_image in example generator.
new 0b175a3 DOC: Update Makefile's clean target.
new c4affd4 BUG: Always return contiguous array from colour conversion.
new 41f7530 BUG: fast_homography should ensure input data is contiguous.
new 146bef5 BUG: Fix fast_homography test based on new lena.
new f8a0e9e BUG: Use local lena data file in tv_denoise test.
new e57dd71 DOC: Update contributor howto.
new 0b7df26 ENH: Add img_as_ubyte.
new 8f6d290 hog: uniform filter instead of integral image
new 01723d7 pep8
new c1b72ea use dtype.img_as_float in _convert for colorspaces. All conversions are done as matrix multiplications with floats, so this is the only way not to lose precision.
new 339fbe7 Merge branch 'dtype_converters'
new 7404896 BUG: Add 'util' subpackage.
new b3759c8 bug: color convertion. make tests arrays float.
new 584d203 Merge pull request #35 from amueller/color_converters_dtype
new 375079e don't use np.empty_like with dtype argument to be numpy 1.5 compatible.
new ee3e0e3 Merge pull request #29 from amueller/canny_usability
new d7c28fc Merge pull request #36 from amueller/dtype_minor
new 13e2193 PKG: Allow make clean to run twice in a row.
new 75d1688 PKG: Remove both .so and .pyc files in find . -name "*.so" -o -name "*.pyc" | xargs rm -f.
new 12066f8 BUG: Make test file non-executable.
new 9da0a65 BUG: Add 'color' subpackage.
new fe49560 BUG: Adopt lena example to use new data module.
new 487f165 slightly faster image conversion by creating less temporaries.
new d7761ba pep8 whitespace
new 2076876 Merge pull request #38 from amueller/dtype_minor
new 0a71c90 BUG: Fix default log-level.
new 3f12aef Fix bug with 2D images
new 47fba11 Add qt-based imread function
new 9b696cf Only enable imread for new enough sip versions. Warn user if sip is too old
new f260a47 Try initialise multiple plugins, not just PIL
new c266290 Don't return an alpha channel if it's not present. Fix return type of as_grey
new 5d2573a Remove as_grey from qt imread
new c53c8f3 Fix axes color order
new 79cde8d have preferrence list of plugins instead of just trying "null" and "pil"
new 7448ba2 null_plugin gets imread as promised in __ini__.py of plugins
new fc612a8 pep8
new 9f89891 Merge Andy's plugin cleanups require to build the Debian package.
new d7a33c9 PKG: Remove empty placeholder files.
new 130d856 Merge pull request #1 from amueller/hog
new de38b5f PKG: Do not build Cython files on clean.
new 656962c Initial integration of CellProfiler's watershed module
new f0702fb Removed unnneeded code to compute strides
new 2b4854a Added the is_local_maximum function, that is useful to determine markers for the watershed.
new 738dcfd Import is_local_maximum in __init__.py
new a07fc6d New example for the gallery: watershed
new 393bd94 ENH: watershed docstring
new 1c5e054 Renamed fast_watershed to watershed.
new 7d420da Docstring for rank_order
new 724733f ENH: give a short definition of rank order in docstring
new 9eb7ec9 Merge pull request #40 from emmanuelle/watershed
new d0bbb52 Initial implementation of Histograms of Oriented Gradients
new 945ede7 pep8 + addressing some of Stefan's comments
new 20a7892 replaced gradient operation with np.diff
new da6c93b replaced arctan with arctan2
new 0bf8ecc use sat_sum for performance improvement
new 8b522cf Add drawing module with Bresenham line.
new 5db89d3 ENH: Use new draw module to construct HOG image.
new 5507213 BUG: Add 'draw' and 'feature' sub-modules.
new c5e02df Merge pull request #28 from stefanv/hog
new 8823b70 Merge pull request #27 from stefanv/radon
new 463e1d2 Merge furhter improvements to histogram of gradients.
new 12ab1a0 Merge pull request #12 from holtzhau/hough
new 131a361 Merge pull request #10 from holtzhau/video-io
new 744b8d7 Qt-based image reading.
new 0ab3be2 DOC: Update contributors.
new b41398d Merge video I/O.
new e2accfb BUG: Fix watershed tests.
new 246be6c BUG: Use integer image values as expected in tv denoise test.
new 47a2c28 DOC: Move Hough tutorial to examples gallery.
new 022aac7 GDAL plugin added.
new 9d8aa9a DOC: Remove PIL dependency.
new 37c0b0e DOC: Release notes for 0.3.
new 5090cef DOC: Update release notes.
new a1ab5af PKG: Update version number for release.
new 4712360 DOC: Update doc url in release notes.
new 5587a0e PKG: After release, update version to 0.4dev.
new d68a64a DOC: Update release instructions (run setup.py register to login to pypi).
new 4f47adf Merge pull request #42 from riaanvddool/gdal_plugin
new 81ebf9c DOC: Typo in release notes.
new 0e7d2b8 DOC: Fix broken link in watershed docs.
new 834a4b0 DOC: Do not rebuild the doc versions index automatically.
new f1c64a3 PKG: Also include .pxi files in the source package.
new c89fd43 PKG: Add python 3 and operating system tags to setup.py.
new d22da55 BUG: Untabify video.py.
new 9a24de9 Fix ValueError on win-amd64
new f83076f Fix `TypeError: must use keyword argument for key function` on Python 3
new f92ace7 Merge pull request #48 from cgohlke/patch-5
new 4336361 Merge pull request #47 from cgohlke/patch-4
new 5d6fcf0 Work around `AttributeError: 'module' object has no attribute 'BufferedIOBase'` on Python 2.7+, Windows
new d6a55c8 Fix `AttributeError: 'function' object has no attribute 'func_name'` on Python 3
new 1a0aa1c Merge pull request #49 from cgohlke/patch-6
new 0fe16b5 Merge pull request #50 from cgohlke/patch-7
new 7f07f82 Fix watershed failures on Python 3
new b57bd82 Fix Python 3 import error
new be02b9a Fix Python 3 import error
new 58226e3 Fix Python 3 import error
new 09e0ecd Edited scikits/image/morphology/watershed.py via GitHub
new 17ff626 Edited scikits/image/draw/draw.py via GitHub
new 7c586cf Edited scikits/image/morphology/__init__.py via GitHub
new fb4c617 Merge pull request #52 from cgohlke/patch-15
new f332b17 Merge pull request #51 from cgohlke/patch-8
new fb66138 Fix ImportError on Python 3
new 02b3175 Fix: use npz instead of npy format for matlab-output files
new b15e7df Fix: use npz instead of npy format for matlab-output files
new 1f101ce Merge pull request #53 from cgohlke/patch-1
new ece0363 Replace .npy files by .npz. Smaller, and avoids pickling problems on Python 3.
new c60d490 Use .npz test data in opencv tests.
new 1aa7af6 Merge npz fixes from Christoph Gohlke.
new 8a06fb7 Fix another instance of an .npy file.
new 38e50ba Merge npy -> npz transition.
new 677c768 Remove OpenCV wrappers for 0.4 release.
new 772c469 Initial revision of skeletonization
new 8ba2518 BUG: Fix scikits.image.test.
new 771c905 DOC: Update contributors.
new 05f780b Remove empty gitwash directory in order to fix submodule.
new 603216e DOC: Add gitwash as a submodule.
new 69a10b6 DOC: Use correct repo URL in gitwash.
new b381d59 DOC: Rewash the git docs.
new 9829021 Fix: don't run all scikits tests when running scikits.image.test()
new a609bd6 Fix print statements missed by 2to3
new 0c54aee Merge pull request #56 from cgohlke/patch-1
new b708d93 Update URL in package description
new cc84603 Remove print statements
new 8024cc9 Remove print statements
new 57745f5 Merge pull request #59 from cgohlke/patch-2
new 8c16be1 Merge pull request #58 from cgohlke/patch-3
new 74bde13 Added skeleonize example
new c120708 Merge remote-tracking branch 'upstream/master' into neil_yager-skeletonize
new 8ad8946 Added more objects to skeletonize demo
new 3d2613c Added unit tests to skeletonization
new fb81057 Added a new unit test
new 9adbca1 Add parameter to flip structuring element about its origin
new b6e470d Remove unnecessary if-block.
new 4f4f219 Reuse open/close operations for white/black tophat
new fb92bfc Add tests for correct behavior of square structuring elements
new ac2714d Fix morphological open/close for square structuring elements with even sides.
new 9ce5ee7 Move test functions to test class
new 6366da8 Add tests for rectangular structuring elements
new b037672 Replace flip parameter in erode/dilate with shift_x and shift_y
new 65b6b6b Minor fix to docstring
new 8735204 Improve docstrings in grey morphology module
new c7c0798 Add examples to grey morphology docstrings
new 9e81cec Specify that input arrays to grey morphology filters must be uint8
new 1cc0f36 Reformat doctests so that tests pass
new 0cfc440 Merge pull request #62 from tonysyu/fix_morph_symmetry
new d9a3a46 gracefully ignore absent plugins
new 22a424b this depends on the plugin used
new 9545f85 removed debugging code
new d0041a8 [ENH] include matplotlib's imread
new 6ac1927 try to load only plugins that have both imread and imshow
new 3ddfdbd Updates based on review comments
new fb987ac add qt plugin again.
new 03e8a61 COSMIT removed unused import
new b250115 Merge pull request #63 from amueller/matplolib_plugin
new 114cf44 Renamed scikits.image to skimage
new 6d67bba Renaming: scikits.image -> skimage
new 1704ab3 skimage/version.py should be ignored. Doc has been updated with new module name ``sklearn``
new c48aa63 Address 2nd round of review comments
new c45db9f ENH: more efficient binary operation in skeletonize
new 6c891fd Merge branch 'neil_yager-skeletonize'
new 3ac50d0 Merge remote-tracking branch 'nelle/skimage' into nelle_varoquaux_skimage_rename
new 91d9949 PKG: Move remaining files that changed since skimage rename.
new 1877519 DOC: Add Nelle to contributors.
new 7542f06 Rename package to ``skimage``.
new a76f12f DOC: Update repo address.
new 5ec4fde PKG: Import skimage instead of scikits.image in changes made since rename.
new d5120a1 DOC: Update gitwash.
new 0f31034 First integration of cell profiler medial axis transform
new 736802b Medial axis transform (skeletonization) from cell profiler
new ed1f054 ENH address comments on PR #65 made by Stefan and Neil
new 25e986d Moved cython file that had not been automaticall moved by rename scikits/image -> skimage
new 39a0e35 scikits/image -> skimage in examples
new f8a51a4 DOC: Minor spacing fixes in docstrings.
new 0b8452f Merge Emmanuelle's port of CellProfiler's medial axis skeletonization.
new d56ae96 Bug fix: Ignore alpha channel when opening RGBA image as grayscale
new 573e208 Merge pull request #67 from NeilYager/neil_yager-alpha
new a63e3f4 Require median filter radius >= 2
new c6e854b Switch radius and mask arguments for median_filter
new b5ad567 ENH: Add binary convex hull computation.
new fdac248 ENH: Add coins image.
new 0b32676 DOC: Better docstring for coins.
new 6bbeda0 ENH: Pre-allocate coordinate corner array.
new 74f7e01 ENH: Improve convex_hull execution speed.
new b34b9d8 ENH: Only perform convex hull on select candidate pixels. Gets us a factor 30 speedup.
new 585c134 Homography docstring update
new 9510e72 Merge pull request #77 from NeilYager/neil_yager-homography-docstring
new 2c61928 DOC: Add note about changed arguments for median_filter
new 09021db PKG: Move io to _io (closes #39).
new 10a315e Merge pull request #73 from tonysyu/fix-ctmf
new c0fa627 DOC: Update tasks list.
new 3892d5b DOC: Add url for convex hull algorithm overview.
new 45ee2e1 BUG: Fix failing test_homography unit test.
new 2191d29 ENH: In test, do not compute hull twice.
new 33469fa BUG: Allow test suite to pass with scipy < 0.9.
new 7ea6a37 Update test data set descriptions. Convert 'coins' to grey-level image.
new f19fb68 DOC: Update tasks with a link to a free qhull implementation.
new 061595f Fix docstring to match new default value and constraint for radius.
new 9aeb79f Merge pull request #76 from stefanv/coins
new 3495767 ENH: Rename convex_hull to convex_hull_image to allow later clean API addition of convex_hull with labels.
new e7f0fe9 Merge pull request #75 from stefanv/convex_hull
new 57294c2 ENH: Use hashes of .pyx files to see whether re-compilation is needed or not.
new 4c88f94 Merge pull request #74 from stefanv/cython_hash
new 78d37d3 DOC: Canny filter. Improved docstring + example for the gallery
new 28028dc Merge pull request #78 from emmanuelle/doc_canny
new 0b124c3 DOC: See also to skimage.sobel instead of ndimage.sobel.
new ea63e7d use 64-bit safe types
new 4cf55a2 Fix another 64-bit corner case
new 989fd66 ENH: Add verbose test function.
new cc7a544 BUG: data: Fix chessboard file name.
new 9307bcb fix _spath error
new 66befec BUG: Problem importing imread
new 31db8f1 Merge pull request #81 from NeilYager/neil_yager-io_fix
new 4fbdeb4 Merge pull request #79 from zachrahan/mcp-64bit
new 4fe7965 NF: Initial commit of greylevel co-occurance (pure python)
new cd8524b ENH: Compute some standard propertices for GLCMs
new 1661015 ENH: Added a gallery example of GLCM textures
new 59ff921 DOC: Added latex formulas to docstring
new 80a83c1 ENH: Use Cython to compute GLCM
new 1d540c2 BUG: Make sure image array is contiguous
new ab780b1 ENH: Updates based on review comments
new 0597cec BUG: Fix typo and docstrng
new 830c6b6 ENH: Address division by zero errors
new 67b408a BUG: Fixed warning suppression error
new 7a191d8 Long lines, remove doctest, division by zero, data type ranges
new 51d643c Add contour-finding
new 3e9945c Make it work
new 077a080 Move to measure submodule
new 7df8486 Update to docstring
new 917d1a8 DOCS: Tighten borders around image in GLCM example.
new 2db1b83 Merge branch 'neil_yager-greycomatrix'
new 4aace26 DOC: Use convex_hull_image instead of convex_hull.
new 1cb10a5 add _find_contours.c
new 5fa41b3 DOC: Improve example gallery layout.
new bea1b75 BUG: Import find_contours from correct location.
new 053b27e ENH: Whitespace cleanup.
new c0b3601 REF: Convert find_contours to Cython.
new 2d4abba BUG: Import imread from renamed _io module.
new ff119bb DOC: Update contributors.
new 7691fdc DOC: Add contour finding example.
new 8579ef0 STY: Clean up docstrings.
new eb0ccb8 DOC: Bold headers for Notes, Reference, etc. sections in reference docs.
new 62754ef STY: Remove unused imports.
new 8bd4637 DOC: Fix team name in license and docs.
new 60abf40 Merge pull request #1 from stefanv/find-contours
new fbb0773 Tighten up _find_contours.pyx
new 207079f Merge pull request #82 from zachrahan/find-contours
new bf609df DOC: Fix some scikits.image mentions.
new 292334b DOC: Script to generate contributors.
new 48b2a2d DOC: 0.4 release notes.
new 4bb7be7 BUG: Python 3 fixes.
new 85531c6 Release 0.4.
new e43a1d2 Move to 0.5 development.
new fb9393e DOC: Update release process.
new cd6d970 Fix ImportError on Python 3
new 9133ab9 Fix ImportError on Python 3
new 14c89fe Fix ImportError on Python 3
new 88f5354 Merge pull request #84 from cgohlke/patch-1
new 5f5b46d Merge branch 'master' of github.com:scikits-image/scikits-image
new 1d02bf0 BUG: Wrong distribution name.
new 804af6f DOC: Update installation instructions.
new 9f32928 Fix docstring use_plugin example
new b7d88b9 Merge pull request #85 from cgohlke/patch-2
new 9b19bd9 Workaround 16 bit image to numpy array conversion bug in PIL
new 0b962c4 Merge pull request #89 from cgohlke/patch-4
new 468b638 BUG: Fix selective plugin loading. Provide function to inspect current plugin configuration.
new f6458f1 ENH: Use dtype scaling routines in qt and pil plugins.
new 50b33db ENH: Tie imshow and _app_show together.
new 0fa504f Merge pull request #90 from stefanv/plugin_load_fix
new 1aec5f0 DOC: Update Cython dependency.
new d5994c6 Short tutorial on segmentation for the user guide + example on the same subject used to generate the figures
new 4e3895b ENH contours of segmentation in segmentation tutorial
new c825548 Fix reading 16 bit big-endian images with PIL
new 2f3da9c BUG: greycomatrix, one of the tests was failing for symmetric case
new a635c23 Merge pull request #96 from emmanuelle/glcm
new 7cd37ae Merge pull request #97 from cgohlke/patch-1
new fbbe387 Add thresholding module with Otsu's method to calculate threshold.
new f3e5a30 Rename otsu_threshold to threshold_otsu
new 9a89fab Add handling for images with negative integers
new 10c1f47 Change docstring threshold_otsu output
new 5a171a2 Remove binarize function
new 6872e9c Add thresholding example
new 6a6e273 Remove thresholding example from user guide in favor of docstring example.
new e7d3799 Fix minor typo in docstring example
new 038db9d Rewrite dtype._convert function
new d9186c9 Remove thresholding subpackage and integrate into filter subpackage.
new 0e551fd Merge pull request #91 from stefanv/imshow_plugin_scales
new 1fb89af Minor changes in wording.
new 756dfd5 Rename `bins` parameter to `nbins`.
new c0fd4a1 DOC: Update 0.4 release notes (wrong gallery url).
new f020edc Ignore auto examples.
new 77f6886 BUG: Correctly load bi-level images via PIL.
new 497b327 Merge pull request #101 from stefanv/pil_bilevel_png
new af01a41 Merged some code paths
new 341c2e4 Fix imread regression for int16 images with PIL plugin.
new abcbe67 Add test for reading uint16 image
new 6cd0188 Merge pull request #102 from tonysyu/pil-big-endian
new 94c89d9 Add test using big-endian uint16 image.
new 1bb446e Merge pull request #1 from tonysyu/scipy_india
new b83ece8 ENH: Allow choice between 4 and 8 neighbor mode. Improve documentation.
new ce27120 Merge pull request #104 from tonysyu/pil-big-endian
new 9ee513c DOC: Add index of tutorials to user guide.
new 0ae507d DOC: Add Emmanuelle's SciPy India segmentation tutorial.
new 8ed834a Add example for threshoding
new 1e12ca0 Improve thresholding example
new 8941798 DOC: emphasize annotation in histogram.
new c7b3f1e Merge pull request #98 from tonysyu/thresholding
new c87b1ad Add exposure module with histogram equalization function
new 4df3663 BUG: Dispatch threads to process entire image.
new c6f16db Harris corner detector
new 5d8110b Added tests
new c78ea10 ENH: Add background labelling.
new 87c2353 Change API for equalize_hist and cumulative_distribution.
new d4ca519 Rename equalize_hist to equalize and minor cleanup
new 62d3b55 Remove `density` parameter in `histogram`
new 7ff9859 Small fixes on the Harris corner detector - documentation, method renaming etc
new bc0f776 Added tests for harris, and small fixes
new 374c446 Added parameter to Harris corner detector to set the deviation for the gaussian kernel of the harris response computation
new 3c2988b small fixes on the Harris' documentation: added capital letters where needed
new 60f146c DOC: Update contributors.
new d74295c DOC: Explain why bincount is used to histogram integer arrays.
new 19fa34f DOC: Rename equalize example to match function name.
new 4e054fc DOC: Move around plot statements so that all axes are labeled.
new 7fd7d29 Merge branch 'tony-exposure'
new 92fe9d0 DOC: Display thresholding example with gray colormap.
new e6224d9 DOC: Add script to plot GitHub pull-request activity.
new 111a3c1 DOC: Better x-axis labelling of PR plot.
new f503720 Add rescale_intensity function with test and example.
new 7285cbe Added Gaël Varoquaux to the corner detector contributors
new 6944430 DOC: fix probabilistic_hough docstring--use correct keyword arg in the docstring, plus a few spacing tweaks.
new edf0cf5 Merge pull request #108 from WarrenWeckesser/ph-doc-fix
new 0aaa6ae Fixed opencv reversion to using cv.fromarray, fixed numpy datatype.
new aa82ba4 BUG: Fix OpenCV array conversion in video loader.
new 23d0bc5 Merge pull request #106 from NelleV/harris_corner_detection
new d1e608b Random walker algo for segmentation + example
new 1cf2da0 __init__.py in segmentation submodule
new 09e3a43 More explanations about the algorithm
new b9d6090 Cross-See also in watershed and random walker
new 528187c ENH: addressed Tony's comments (renaming of functions, doc)
new 6559b8f ENH Removed unused argument in random_walker_segmentation
new 981775d Clean up void-pointer handling to clarify intent and fix multipage 64-bit bugs
new 46d3305 ENH Tony's comments on random walker
new a438cdd Merge branch 'random_walker'
new 945f85c DOC: Add script to randomly link to a gallery image.
new b3cc37c DOC: Generate correct link to gallery and build javascript before gh-pages upload.
new 570e5cf DOC: Ignore random.js generated file.
new e2c155d BUG: Edge detection routines returned images with invalid ranges [0-255] but dtype float.
new 3725f44 Merge pull request #115 from stefanv/edges_float_conversion
new f9907ff ENH: Use nearest neighbor interpolation by default in matplotlib plugin.
new 273e8ff Make library-loading more robust and provide better errors
new ec6ed76 Merge pull request #112 from zachrahan/freeimage-64-bit-cleanup
new 960ca18 Fix indentation error
new 3a1641f Merge pull request #117 from zachrahan/freeimage-library_loader
new b5dce45 ENH: Add metadata reading functions Required small refactoring of file IO to provide a saner interface.
new a4c986b DOC: Fix read_multipage docstring
new 12e67e7 ENH: Clarify FreeImage IO flags, improve tests, and fix documentation
new 5c5de01 STY: Whitespace cleanup freeimage patch.
new 5999c7e Merge pull request #118 from 'zachrahan-freeimage-new-metadata'
new a322c0d ENH: When displaying images using matplotlib, use the grey colormap by default.
new fd0e88b Minor modifications to Harris corner detector
new 63f1734 Fix peak detection algorithm.
new 83dc4a1 Refactor peak detection algorithm from Harris detector.
new 4831185 Make test more robust.
new 8bb8d93 Use ndimage.maximum_filter to simplify peak detection.
new 1c9b340 Rename peak_min_dist to peak_local_max.
new 96ba7eb Move harris corner detection from filter to feature subpackage.
new 5c71545 Merge pull request #110 from tonysyu/peak-detection
new cfc1dfa Merge pull request #99 from cgohlke/patch-2
new 782fbab ENH: Add contrast stretching to histogram equalization example.
new 078ed48 Fix casting error when converting from int8 to uint16.
new 74b0f41 ENH: Add tests for full coverage.
new 0dcd5dc ENH: Check that float images are between 0 and 1.
new ec65e1f DOC: Fix some typos in plot_equalize example.
new b4eb6ee Merge pull request #1 from stefanv/tony_rescale_intensity
new e18fb67 ENH: Cleanups as suggested by Tony.
new 118cd49 Merge pull request #105 from stefanv/label_cleanup
new e4a14ee PKG: Rename scivi to skivi.
new e7429b6 DOC: Change body layout so that it doesn't wrap around sidebar.
new 2ff1e1a DOC: Adjust font sizes.
new ded349a DOC: Remove duplicate css definition.
new 2debda4 DOC: Increase spacing between paragraphs.
new fadd72d DOC: Adjust heading size and color.
new 6fe3996 DOC: Adjust header and link colors.
new 05b291f DOC: Remove duplicate "pre" formatting.
new 7da2c0d DOC: Adjust link font in contentstable.
new db3d328 DOC: Tweak layout of contents table.
new bd34cc6 DOC: Adjust spacing between sections of sidebar.
new 9be0ad2 PKG: Remove version file that should be auto-generated.
new 5ed5c07 Fix test: clip image that exceeded float range.
new 56331c7 Merge pull request #121 from tonysyu/dtype-convert-updates
new c85ab69 PKG: Add back version file, but with version unbuilt-dev.
new a17f339 BUG: Fix import of harris.
new d1c3056 DOC: Adjust size of tt text (i.e. ``text``).
new 86963c4 DOC: Adjust spacing after `pre` block.
new 4431a21 DOC: Fix grid layout of gallery.
new 303cf3a DOC: Improve description of image data types in user's guide.
new 6cc5503 Merge pull request #123 from tonysyu/doc-user-guide-dtypes
new bb39a30 Merge pull request #122 from tonysyu/doc-css-changes
new 5387477 Merge pull request #107 from tonysyu/rescale-intensity
new 5655f7e Merge pull request #116 from stefanv/matplotlib_interpolation
new 46e5f0a Merge pull request #120 from stefanv/scivi_rename
new 1c0aec6 DOC: Show version of skimage that was used to build example.
new 06acc5a DOC: Add description of subpackages to package docstring.
new 7efb098 Fixed 2 typos and 2 wrong argument types in the docs.
new e8f0523 Merge pull request #126 from michaelaye/master
new fa46574 DOC: Ignore all auto generated results.
new 7cc84b5 DOC: Add sidebar section listing package versions.
new 295c454 Merge pull request #127 from tonysyu/module-docstrings
new 2fcbfd8 DOC: Expand on Tony's module summary.
new 38d432f Merge remote-tracking branch 'tonysyu/versions-in-sidebar' into tonysyu-versions-in-sidebar
new 87a0fd1 DOC: Refactor Javascript for listing doc versions to only have the version in one place.
new eb3d218 PKG: Update release instructions to update doc versions javascript.
new 4d3443f DOC: Use absolute path to versions javascript.
new d4a23da Merge PR #128 from 'tonysyu/versions-in-sidebar'.
new e548a9f DOC: Add arrow to indicate current doc version.
new cbbc24b Safely check doc version in javascript.
new 18b76a6 DOC: Link logo to main webpage. Add navigation side bar.
new 5c9c8c1 DOC: Fix Other Parameters section.
new 0deba46 Minor fixes to build process.
new ec8f62e ENH: Fix dtype conversion before hsv2rgb and rgb2hsv.
new f4330db ENH: Add grey2rgb.
new 36b37e9 Merge pull request #129 from tonysyu/minor-build-fixes
new abbd7c8 DOC: Use CSS to style versions sidebar.
new 5b120e6 Merge pull request #131 from tonysyu/versions-sidebar-tweaks
new b8a19a0 DOC: Add (u)int32 data type ranges to table.
new fa821bf DOC: Tweak superscript formatting.
new 06c2ed9 DOC: Add example of bad dtype conversion.
new 23cd231 Merge pull request #124 from stefanv/doc-gallery-show-version
new 9c7752e DOC: Fix outdated docstring.
new 57a61bd Merge pull request #132 from tonysyu/doc-dtype-tweaks
new 12ac179 Merge pull request #130 from stefanv/grey2rgb
new 4490194 DOC: Update dependencies.
new f912100 DOC: Update installation instructions to match those on web page.
new 7a0c1f6 DOC: Add FreeImage as optional dependency.
new 58fb382 Use matplotlib as the default display/read plugin.
new a2746c2 ENH: Add show() to PIL plugin to support more consistent code over different plugins.
new 8a4bd85 added HOG example
new 0a8d967 pep8
new d1c5d92 DOC: Import hog from skimage instead of scikits-image. Rescale the output histogram to be more visible.
new b6147eb Merge PR #135 from 'bdholt/enh-hog' after rebasing.
new b88a9ac DOC: Fix formatting typos in HoG example.
new 5d27614 BUG: Fix FreeImage tests.
new 0f75037 DOC: Add FreeImage as optional dependency.
new 96af068 added HOG example
new 8f7a2c0 pep8
new 072202a DOC: Import hog from skimage instead of scikits-image. Rescale the output histogram to be more visible.
new 7ac612e DOC: Fix formatting typos in HoG example.
new 99ac9e4 ENH: load libfreeimage based on case-insensitive libname prefixes
new 6a31ea8 BUG: Make it work actually...
new f2321d0 STY: Clarify logic of code for FreeImage loading.
new b127f60 STY: Whitespace cleanup.
new 9357f94 BUG: Fix FreeImage tests.
new 917f345 Merge PR #134 from 'zachrahan/freeimage-linuxload'
new da707a7 initial push of array view codes. tests for block views
new b4a1bf1 remove empty line in __init__
new 39a4878 more tests on rolling views
new 41a259e simplifying code for clarity and modifying tests
new 93cd715 make doctests pass with nose
new 1108bd8 ENH: move 'util.array_views' to 'util.shape'
new c1c954e STY: pep8 in util.shape + its tests
new 96f5d14 FIX: revert version.py
new 8045e1f Restore numpy 1.5 compatibility
new dae1268 Merge pull request #139 from cgohlke/patch-3
new cae47ed STY: fix typos
new 7486496 STY: move 'util.shape' contributors to CONTRIBUTORS.txt
new acaa05c User guide: first draft of "getting help"
new facb37b getting_help file
new 63550c5 Merge pull request #141 from emmanuelle/user_guide
new 99efa1b ENH: add montage2d with tests
new 3ac467b DOC: Convert README to markdown for proper github rendering.
new 64177b2 ENH: add a 'normalize' kwarg to util.montage2d()
new 96c2b3f DOC: add example for util.shape.view_as_{blocks,windows}
new c715adf DOC: add example of use of view_as_blocks with kmeans for simple dictionary learning
new 7de0a3c Merge pull request #142 from tonysyu/fix-readme-file
new 68f8c68 FIX: util.montage2d 'normalize' becomes 'rescale_intensity' and defaults to False
new 5e9ad08 DOC: update view_as_blocks and gabors_from_lena example using comments from @stevanv (PR #138)
new e77d7a7 DOC: don't divide by 255 when it's not required ;-)
new ac54f69 DOC: remove dependency on PIL, see PR #138
new c61fe51 DOC: remove <BLANKLINE> nastiness, replace with appropriate doctest directive
new 0a9522d FIX: montage2d should not use rescale_intensity's out_range kwarg
new e1e3d6c Merge pull request #136 from stefanv/plugin_consistency
new 0c304d5 Merge pull request #138 from poilvert/array_views
new 92f3c58 Clarify difference between view_as_blocks and view_as_windows.
new 233c6f7 Merge pull request #143 from tonysyu/array-view-docstring
new 33360cd BUG: Fix data range in exposure tests.
new bf5f9f0 BUG: Use PIL as default imread plugin, since MPL imread is still somewhat broken.
new cb93ebb DOC: Limit figures to 8 inch widths.
new 520c961 DOC: minor example clean up.
new 27af467 DOC: tweak image sizes in gallery.
new 472b84d DOC: Add note about figure width to developer guide.
new 2c94fc7 Merge pull request #146 from stefanv/imread_default_plugin
new 2b6208c DOC some sphinx and rst fixes
new 0d69731 DOC finally....
new b022dbd DOC minor
new 3e2db24 Merge pull request #148 from amueller/doc_error_message
new a073051 Merge PR #147 from 'tonysyu/fix-gallery-sizes
new 9512678 ENH: Add tifffile IO plugin
new a6b154f Fix description of tifffile plugin
new e697d0b DOC: Update tasks.
new 0962fa4 PKG: Move README.md to README.rst.
new e2d4261 ENH: Add tifffile tests and improve freeimage tests
new b80ef2a Fix copy/paste error
new 026fae0 BUG: Fix tests
new c9a14db Merge pull request #149 from zachrahan/tifffile-plugin
new eae045b DOC: Add hidden toctree for main index.
new dc78c59 DOC: Add toctree to example gallery.
new c4b8964 DOC: Add hidden toctree to tasks
new a040c61 DOC: Remove completed tasks.
new fc71d31 DOC: Delete completed task.
new de14e8f DOC: Remove "completed" labeled-image plotting task.
new e7d5626 Merge pull request #151 from tonysyu/cleanup-tasks
new 99a8db9 Restore previous io plugins
new 48b0e6d Merge pull request #152 from cgohlke/patch-1
new 1f7f234 Fix invalid Python 3 syntax
new c2cf8db Fix invalid Python 3 syntax
new 7c8c661 Merge pull request #153 from cgohlke/patch-2
new 161e42e Fix conversion of bytes to str on Python 3
new faf92e1 Fix TypeError on 64 bit platforms
new 2f9a7bd Merge pull request #154 from cgohlke/patch-3
new 5e7f08e Fix test when tifffile plugin is not available.
new 4f4de23 Merge pull request #156 from tonysyu/fix-tifffile-test
new b553829 Merge pull request #155 from cgohlke/patch-4
new 0d79578 DOC: Add image colorization to tasks.
new 5b8798e DOC: Add v0.5 release notes.
new d86dc4e PKG: Update version to 0.5.
new 41998c5 PKG: Update doc versions.
new c248241 PKG: Move development to 0.6dev.
new ea442bc DOC: Update release instructions.
new 1ff488f DOC: Fix typo in 0.5 release notes.
new fbd3558 DOC: Update release instructions.
new 3c91aab FIX: Check plugin is loaded before checking its functions.
new 4b27611 PKG: Change gitwash submodule git remote so that ShiningPanda can pull that repo.
new 24e97b7 TST: Try to get Jenkins build working via Tox.
new ecaf75f ENH: Remove annoying version.py.
new 02edb16 Merge pull request #157 from tonysyu/fix-plugin-call
new 694fb1a PKG: Fix version import to allow build on 3.2.
new e99f18b BUG: Fix imports for Python 3.2.
new f24c9d5 Merge pull request #160 from stefanv/python3.2-fixes
new 7419c68 BUG: Fix typo in montage--xrange is no longer supported.
new ac625e9 BUG: Correctly fix zip import for Python 3.2. 2to3 simply removes the itertools import line.
new 57bf9d1 ENH: Add freeimage as fallback io plugin, to allow buildbot to read test images.
new 3419d5d Merge pull request #159 from 'stefanv/version_remove'
new 5bd28c3 Remove version.py reference in Makefile
new 5bf77b5 No interpolation when displaying small patches in example
new 42b5e91 Merge pull request #162 from vincent-albufera/improve_doc
new ea15eb7 ENH: Allow forced copy of data upon type conversion.
new b928912 Explicitly use float64 instead of float.
new 76270f0 Merge pull request #163 from stefanv/convert_with_copy
new 3f9ad55 FEAT: new shot at bento build.
new 8c9777b Addition of examples in the harris and peak local max function
new 2aca8cd Addition of examples in the harris and peak local max function
new 7c055a3 ENH: Do not use global root logger state in skimage.
new 8743a13 FEAT: update to bento master - simplify waf declaration.
new 3c9ab47 BUG: division by zero for small arrays in iradon
new cdb61f8 Merge pull request #171 from emmanuelle/modif_radon
new b9b9cd5 Fix import
new 187bc6d Deprecate threshold and replace absolute and relative thresholds.
new 2585a32 Change threshold test from >= to >.
new ae6ef22 Fix: return empty list for flat image.
new 0b33dd5 Add docstring comment about flat peaks.
new 8bdc9f2 Rename for clarity
new c3af26d ENH: Add `num_peaks` to limit the number of peaks.
new 5438d31 Merge pull request #176 from tonysyu/peak-fixes
new 4565a49 added draw.polygon function with test cases
new 5491d85 Addition of examples in the harris and peak local max function
new 0aa0087 replaced fixed output array size with dynamic lists
new 649d912 improved doc string
new 0db6127 removed area function and removed old comment
new 4834d7e added example script for draw.polygon function
new 7191eaf removed geometry package from setup script
new de8369b added draw circle and ellipse functions
new d83592c improved doc string
new 53ac34a renamed function bresenham to line
new 48328cd combined all draw functions in one example script
new 5b854d9 changed interface of draw.polygon function for a more consistent usage
new af345f1 improved color assignment of circle in shapes example script
new 9fdfdc9 added explicit cython list type and changed creation of contiguous arrays
new c7d0695 DOC: update contributors
new 6aa7d54 DOC: Add Yaroslav Halchenko to contributors.
new 6cdd36c Merge pull request #177 from ahojnnes/draw-polygon-alt
new abca94e BUG: Provide bresenham as backward compatible name for line.
new 16b1d95 Merge pull request #179 from neurodebian/master
new a0c3e49 Merge pull request #166 from 'vincent-albufera/exemple_modif'
new f4e7e3e Merge pull request #169 from stefanv/local_logging
new cf0a473 REF: tweak bento build.
new 238d4eb added adaptive threshold
new d81650f fixed some typos
new d0d7142 added mean method to adaptive thresholding
new aca8522 renamed adaptive_threshold to threshold_adaptive
new 90f8409 updated thresholding example script with more examples for adaptive thresholding
new 243a5ec clarified comment
new 8c6b791 removed unused import
new f8e3ba4 adapted new function name for adaptive threshold in test cases
new bacde61 updated test cases for adaptive thresholding
new 8b8b6d0 added generic method to adaptive thresholding
new 4ad79cb replaced unicode characters in doc string
new 829f6ad separated filter masks of mean filtering in adaptive thresholding
new 59376a7 improved doc string of adaptive threshold with more detailed description and example
new 13c716f changed name of array variable
new 6b8c408 restored old otsu threshold example script
new 3ab6300 BUG: fix logging for Python < 2.7.
new 2685746 Merge pull request #181 from tonysyu/fix-logging-py26
new a3d336f cython implementation of adaptive thresholding replaced with pure python version
new ffcade8 removed unnecessary cast step
new def7698 fixed typo in doc string
new 7b4fea2 fixed bug when sigma is set manually
new 43193a8 Merge pull request #178 from ahojnnes/adaptive-thresholding
new 12669d6 BUG: Remove import of non-existent module.
new e84abb1 DOC: Add example of adaptive thresholding.
new cb9f030 Change "text" image to grayscale.
new 7df3707 ENH: Implement fast coordinate transformations.
new e13cc25 BUG: Fix incorrect import.
new 874c7c1 DOC: Add CSS for LaTeX math.
new 278d132 PKG: Add first Debian packaging files.
new 09b700c PKG: Depend on Cython >= 0.13.
new a2d8d43 PKG: Use dh_python instead of py_support to build. Add 'noclean' build option.
new 7ab0597 PKG: Progress towards doc building.
new 4f853c7 PKG: Working Debian package.
new e1c9dec PKG: Let's stay at slightly lower level of debhelper compatibility
new 9a4faee PKG: let's use 3.0 (quilt) format for the pkg
new 330ae06 PKG: must be a non-Debian-native version, so added -1 for Debian revision
new 9fc9a7b PKG: pkg should match the module name (hence python-scikits.image) + Uploaders (me)
new d4e02e6 PKG: mangle the name of the downloaded tarball from github
new a6d964f PKG: Add scipy build dependency (when the API is built, scipy is imported by some packages).
new 4957834 PKG: Use dh_installdocs to install additional docs instead of incorrect cp
new 21f4391 PKG: lintian-override for -doc to ship the license.txt
new 4db1b8f PKG: use dh_links (with links specified in .links) to use system-wide installed jquery and underscore
new f49c331 PKG: do not use system-wide underscore.js for now
new 081808d PKG: ignore changes in version.py while preparing source package
new 1681001 PKG: Boosted standards policy compliance to 3.9.2 (no changes needed iirc)
new 0fe0238 PKG: Bring Debian package files up to date with 0.5.
new 7f5a18e PKG: Fix timestamp timezone.
new 8f140f9 PKG: Add template for skivi man page.
new 9308000 adjusting version to match git snapshot
new b424a56 source name should match in changelog and control
new 146c5c9 adjusted extend-diff-ignore to exclude skimage/version.py
new f695517 libfreeimage3 into *Depends
new adcc59e removing residual of scikits.image in favor of skimage in debian/rules
new 2b91b1c python-imaging into Build-Depends and Recommends
new 93a983c fixing some typos and minor in debian/rules
new 92c1101 PKG: Add first Debian packaging files.
new 872cead PKG: Depend on Cython >= 0.13.
new d147fbf PKG: Use dh_python instead of py_support to build. Add 'noclean' build option.
new 3a48102 PKG: Progress towards doc building.
new ff1db52 PKG: Working Debian package.
new 7dfddd2 PKG: Let's stay at slightly lower level of debhelper compatibility
new ba8156b PKG: let's use 3.0 (quilt) format for the pkg
new f4e7bca PKG: must be a non-Debian-native version, so added -1 for Debian revision
new 1aaaf9b PKG: pkg should match the module name (hence python-scikits.image) + Uploaders (me)
new ad8a059 PKG: mangle the name of the downloaded tarball from github
new 102adc2 PKG: Add scipy build dependency (when the API is built, scipy is imported by some packages).
new 50e8e25 PKG: Use dh_installdocs to install additional docs instead of incorrect cp
new bf28134 PKG: lintian-override for -doc to ship the license.txt
new 40d2939 PKG: use dh_links (with links specified in .links) to use system-wide installed jquery and underscore
new 34b2510 PKG: do not use system-wide underscore.js for now
new abf2963 PKG: ignore changes in version.py while preparing source package
new cf25c73 PKG: Boosted standards policy compliance to 3.9.2 (no changes needed iirc)
new 86f442c PKG: Bring Debian package files up to date with 0.5.
new fa5a986 PKG: Fix timestamp timezone.
new 5ffa53b PKG: Add template for skivi man page.
new 429dedd Merge branch 'yarik_debian' into debian
new 31e3ab5 Fixed padding in radon, iradon. Tests for small images.
new 942dd52 Add "page.png" and use for threshold example.
new 71c8eda Merge pull request #185 from stefanv/doc_math_css
new 29a2fc3 Remove unused imports
new cfa9bbf Rename greyscale morphology functions.
new 284753a Make test module runnable.
new 8fb597b Fix dtype compatibility for functions in morphology.grey
new 9b63224 DOC: Update man page.
new 0edefed Replace `import *` with `import grey`.
new 136a020 Remove unused variable.
new 9358d78 Add `__all__` to grey module.
new dc6c3d0 Rename test module to match module.
new 6391275 PKG: Update copyright.
new 03aa64d Merge pull request #187 from tonysyu/morph-cleanup
new 01c7d03 Merge pull request #186 from holtzhau/radon_fixes
new 0cede58 Merge pull request #182 from tonysyu/threshold-example
new f102795 PKG: Require Python 2.6.
new 4f2f265 PKG: Update SciPy and matplotlib dependencies.
new 836d5a6 PKG: Update version.
new a8e96f9 BUG: Fix Python 3 syntax error.
new ec8ff82 PKG: Adjusted upstream version to match the reality
new 30d8b3b PKG: We should aim for compliance with up-to-date policy 3.9.3 ;-)
new 5ce98df PKG: actually install the pre-crafted manpage
new 6fb8197 PKG: Adjusted lintian-overrides for now having no scikits. namespace and no license.txt
new 0649956 PKG: Move any handing of docs under if_nodoc, no need for custom mv if there is .docs
new 278fa00 PKG: rudimentary gbp.conf to ease building with git-buildpackage
new c101b48 PKG: fixed forgotten scikits.statsmodels reference ;-)
new 3498a2e PKG: simplified and unified debian/copyright to match released 1.0 version of DEP5
new becf1b7 PKG: actually we should only care about "requested" not all "supported" python version
new e9ce595 PKG: fixed debian/watch, made it now use githubredir.debian.net
new 2216db0 PKG: added .doc-base file
new a5d8593 STY: Cleanups after Tony's review.
new f1ac4f9 STY: Move swirl to _warp_zoo so we can add more transforms later.
new 9c13bab BUG: Ensure that the appropriate I/O plugin is used in the test suite.
new 52f3531 BUG: Fix plugin import on systems without PIL or FreeImage.
new feb3e92 TST: Increase radon transform threshold to make test more robust.
new 92b1e88 Merge commit 'v0.5-100-gfeb3e92' into debian
new ae0e6fd adjusting debian/changelog -- preparing for the first ever upload to Debian proper
new 54dc1bb STY: Minor cleanups.
new 59b65fd Merge pull request #164 from cournape/bento_build
new 4296597 BUG: Temporary workaround for shape offset parameter in radon transform.
new 4524f99 ENH: Better formulation of _stackcopy.
new 085af1d Merge pull request #184 from stefanv/fast_coordinate_map
new 23311a0 Convert template matching Pull Request to skimage
new 424a2b8 Remove unused imports
new f6b279b Fix whitespace
new b79a8dd Update setup file to new repo and fix typos
new f8e0478 Remove dependency on math module
new ae85fa8 Wrap long lines
new 19f1021 Clean up docstrings
new 49349a0 Fix copy-paste bug
new d43049d Wrap long lines
new 4ab4213 Change OpenCV import to make it an optional dependency
new 5661119 PEP8: add spacing around operators
new 2b368ae Remove unused `integral_image` function in _template.pyx
new 6272c31 Simplify _template.pyx using integral_image from transform subpackage.
new acc35c8 Add comment about code duplication.
new 12b39da Fix assert failure in example
new e6098e1 Replace assert statement with plot to show matches
new 01d66fc Reorganize example so that all plotting code is at the end
new e8461e2 Move template matching to feature subpackage
new 2a00e24 Change _template.match_template variables to float.
new 9d3072d Fix type errors in `match_template` by casting inputs to float32.
new 425a4ea Use `feature.peak_local_max` instead of custom peak detection.
new 8c81610 Remove OpenCV version of match_template
new 545bdab Refactor template matching.
new 3c7ae84 Remove unnecessary truncation at boundary.
new cbdea0d Add `pad_output` argmument to `match_template`.
new a87bcb2 DOC: demonstrate where the template is matched in an image.
new 2e8fcef Simply equation in docstring of `match_docstring`.
new 883dd24 Fix bug when indexing into summed-area table.
new 753e999 Minor cleanup
new 5682d27 Rewrite normalization algorithm.
new 94262bc Tweak example to reduce confusion.
new f21f032 Add normalization test and remove unnecessary clipping.
new 7caf85a Renaming for clarity.
new 5d79537 Fix convolution input to get correlation results.
new 43ed4b9 Pad input image instead of output.
new b2006da Change `flipud`/`fliplr` to array indexing.
new 5e49eb4 Add alternate example for `match_template`.
new 0c1e354 Check that image is larger than template.
new ad99285 Prevent `match_template` from returning NaNs.
new 383ca62 Set `match_template` to default to no padding and fix test.
new 193d5ab Rename `pad_output` parameter to `pad_input`.
new a2f9158 Add test for `pad_input = True`.
new 06bd3eb Add doctest example to `match_template`.
new 4c3f8a3 Fix template example.
new 8dbf6f4 Fix shape unpacking ((height, width), not (w, h)).
new f3e9102 Add new example plot for `match_template`.
new 3c3c95b DOC: Replace template example with alternate example.
new 8a31b76 Add contribution note.
new d5eac3b Merge pull request #100 from tonysyu/skimage-template
new d19d458 BUG: Fix internal import in template matching.
new 7326b19 BUG: fix test images (float images between 0 and 1).
new fc676d6 BUG: Correctly import _feature in Python 3.
new 01d86e3 DOC: Remove Sphinx extension for inheritence trees.
new 5a89ef6 DOC: Replace use of gen_rst with plot2rst extension.
new 048c6c0 BUG: Fix stackcopy for grayscale image.
new 8407487 DOC: convert segmentation example to tutorial-style example.
new db2f7dd DOC: Set rcparams for better default plots.
new ca25314 Remove gen_rst
new 3917fbb Merge pull request #189 from tonysyu/fix-stack-copy
new 4e87a1d Add new 64-bit metadata types to METADATA_DATATYPE (new in FreeImage 3.15.3)
new 6271947 debian/rules: globally export MPLCONFIGDIR and HOME so they would be in effect also for unittests resolving FTBFS on build boxes.
new 4f0a2c7 Merge pull request #191 from cgohlke/patch-1
new 34505fe BUG: Fix FreeImage Py3k compatibility [patch by Almar Klein].
new 8f43ee7 BUG: Catch all exceptions, including NotImplementedError, when checking for number of CPUs in multi-processing.
new 3ff1ebf Rewrite convert function
new e4b4923 Adjust tests for new type conversion rules
new fc42d86 Adjust rescale_intensity function to new dtype conversion rules
new 4d999c3 feature.hog(): use y,x coords consistently, now works on non-square images
new 582aa19 Merge pull request #192 from tangofoxtrotmike/master
new 64da74c Fix grammar
new 754f0e5 Docstring additions
new 8e67dd9 Fix spelling
new 85670d6 Update docstring
new 7e51e51 Fix whitespace
new 8c1acfb added regionprops function
new 6905603 adapted to PEP8 whitespace conventions
new cb673ba extended and improved description of properties in doc string
new e845dc7 moments and central moments no longer use separate functions
new 658dbec removed old description of moments in doc string
new 6b0c0e1 changed reference notes in doc string
new 0027b91 added test: labelled image must be of integer type
new e993124 most functionality of regionprops now pure python except for moments
new 1b2bed7 renamed regionprops source files for better separation between function name and source file
new 4eb3028 fixed typo and improved example in doc string
new 19614cc euler number now behaves like MATLAB implementation
new 04e444d added test cases for regionprops
new 87ddbbe more constistent way of determining ellipse parameters
new 8ec5286 fix wrong indentation
new b04138c parameters of ellipse match Matlab results
new 06759d2 make all test cases of regionprops work
new c414d8d update contribution for regionprops
new 8d1f2dc remove unused variables
new e30fcfc make matrix shape more readable in doc string
new 627ac3c change reference note in doc string
new 0c22521 reduce parameter choice of properties
new 58d07c0 replace inline latex equations in doc string with plain text
new 7b0703f regionprops takes optional intensity images
new 12a878d add example script for regionprops function to documentation
new 8e09617 add moments Cython extension to bento.info
new a3b9ca7 Merge pull request #183 from ahojnnes/measure
new 2eb0a25 BUG: Remove debugging print statement that broke Py3k.
new 31d341c Fix uniform conversion to signed int
new b7045e6 Fix rescale_intensity
new 5153c97 Fix numpy 1.7dev casting
new 8575a46 Verify dtype
new c4552d2 Return correct dtype
new 4377c64 Code cleanup
new dad16f8 Restore test_float_out_of_range
new 11c4ca7 Add floating point range check
new 15c0df3 Fix TypeError
new 225cfca Use general format
new 6d997b9 Remove controversial range check
new bbc5b8e Remove range check test
new cb44e50 Allow for type of hdu.size changing in PyFITS 3.1
new 3c83eb8 Readability improvement suggested by tonysyu
new b038677 Fix: check all io functions when loading of default plugins.
new 96bad2e Add range check against better judgment
new bde2831 Add test_float_out_of_range
new ffff4a3 BUG: MCP could segfault in places where both positive and negative moves would go out of bounds. Previous assumption was that no location in the array would be one move from both upper and lower boundaries. This assumption is now removed.
new 79972c3 Indent 4
new 8f237db ENH: Add tests for boundary-overlapping offsets
new 7f823a4 Merge pull request #194 from jehturner/pyfits_hdusize_fix
new ec29249 Merge pull request #198 from zachrahan/mcp-index-fix
new a7b41f3 Merge pull request #193 from cgohlke/patch-1
new d32268e PKG: Update release instructions--add version to bento.info.
new 8141f39 BUG: Fix PIL test on big endian.
new 9824544 Fix test failures on Python 3
new d68d43c Merge pull request #200 from cgohlke/patch-2
new 6741bb6 DOC: Fix link formatting
new 944f79c BUG: Fix background labelling for case when (0, 0) belongs to the background.
new 76134ff Fix build error on EPD for Windows
new 8ece051 Merge pull request #202 from cgohlke/patch-3
new 4ab7d0a Modifications to random walker segmentation algorithm:
new 2ec05f3 Refactor how PIL is set as default for imread.
new 37d1fd4 DOC: Provide correct link for tifffile plugin.
new 417776f Merge pull request #196 from tonysyu/fix-plugin-init
new 7c19250 BUG: Use PIL as the default image loader.
new 0a30a20 ENH: Allow resetting the plugin state.
new a903aa6 Replace mpltools reference with skimage.
new 3529e4d ENH: Add Structural SIMilarity (SSIM) image comparison.
new 2262209 ENH: Add SSIM gradient.
new 58366f8 ENH: Rename ssid to structural_similarity to avoid confusion with self-similarity features.
new 03f6da1 DOC: Example of structural similarity. The example is currently broken because structural_similarity does not auto-detect dynamic range.
new ac86299 DOC: In ssim example, use correct dynamic range in algorithm and when displaying results.
new 3756772 ENH: Automatically determine dynamic range in ssim if not specified.
new 4816d6f PKG: Rename _ssim to _structural_similarity.
new 49b7eac STY: Wrap long line.
new fce9de6 ENH: Promote as_windows to a utility function.
new 635b836 PKG: Rename as_windows to view_as_windows.
new 0092209 BUG: Remove double import of find contours.
new 87739ed BUG Remove merge artefact.
new dd61f48 BUG Fix invalid import of structural_similarity.
new 4c66c18 BUG: Fix structural similarity to use new signature for view_as_windows. Remove bad gradient check.
new b8d43b2 Merge pull request #190 from tonysyu/plot2rst
new c4854e7 Merge pull request #119 from stefanv/ssim
new f487221 Merge pull request #208 from stefanv/io_reset
new 9bcda27 Skip test that fails for PIL < 1.1.7
new 9731b87 DOC: Add 0.6 release notes.
new 36a3924 PKG: Update version to 0.6.
new 53426a0 PKG: Update doc versions.
new 249fa14 PKG: Start 0.7 development cycle.
new abb5cc1 PKG: Use different delimiter in contributors list.
new b891a7c DOC: Update release instructions.
new cab2ea4 Merge tag 'v0.6' into debian
new 403ebe6 changelog entry for 0.6-1
new f7b3d80 COSMIT pep8
new 9f34c84 COSMIT don't let pep8 make your matrices ugly.
new ee0fd86 COSMIT fix ugly line breaks.
new 1251f77 COSMIT minor pep8
new f7c5620 COSMIT no spaces around power ``**``. Fun: https://gist.github.com/1671995
new d7f1a3a COSMIT minor stype improvements, whitespace in error messages
new 46e959a COSMIT some manual pep8, removed unused imports, removed unused variables and fixed a bug in a ValueError statement.
new de74ee7 Merge pull request #205 from amueller/pep8
new 4d1809a BUG: Allow rgb2grey to be called on grey-level images.
new 1dcc172 TST: Check number of input angles in radon tf.
new 8d313f1 Fix io.imsave() problems with passing arguments to plugin "freeimage"
new 94e290c Merge pull request #214 from cgohlke/patch-1
new 25efae8 Add morphological reconstruction with test and example.
new c0c2396 add perimeter measurement
new 84e18de improve and restructure geomtric transformations
new da3239d remove old import
new bbd9280 add example to make_tform doc string
new 33a7dde update contributors
new fdf1b6d fixe index errors and improve setup of some matrices
new acb1d71 apply PEP8 guideline
new 8bde92b remove inconsistent numeric correction and fix test case
new cb3c93a change API design and rename some functions
new 2a75b78 change arguments of function estimate_transformation
new ec5c339 fix wrong exception type
new 640edc2 fix doc string formatting of function estimate_transformation
new e2ce1d6 redesign class interface
new 234810b fix inconsistent doc strings
new b2ca833 fix transformation union and add test case
new 4dcf852 change interface of transformation merging
new 9dbad00 add support for using transformation objects in warp function
new 5feafee extend doc string example for geometric transformations
new d7b2c5b add missing doc string for polynomial forward transformation
new afb479d geometric_transform can transform single coordinate tuple
new 8e8e2b9 add short tutorial for geometric transformations
new 6e5c23e Merge pull request #216 from ahojnnes/perimeter
new e9f111d PKG: Add python-support to build dependencies (closes Debian-681896).
new a454930 Merge pull request #214 from cgohlke/patch-1
new d30192b PKG: Release 0.6.1 bugfix.
new c82f1ed Changelog for 0.6.1-1.
new 9fe593d Merge tag 'v0.6.1' into debian
new a80388c PKG: Update Debian packaging instructions.
new 433e329 PKG: More detailed changelog.
new f606653 DOC: Add list of tasks for SciPy 2012 sprints
new 576c6b5 DOC: Add SciPy as a runtime dependency.
new ce489a0 DOC: Update tasks.
new 02a26db remove message about not being able to load nose; fixes #218
new 81764f6 ENH: Add orientation kwarg to IntelligentSlider
new c27119b ENH: Add image viewer based on Qt and Matplotlib
new 89f0151 BUG: Fix testing failures when FreeImage not installed.
new 0036dc9 ImageCollection now supports slicing
new 5101aa2 added test for ImageCollection slicing
new 12fb05f Merge pull request #220 from thewtex/freeimage_error
new dceb7b6 variable name changes and small fixes
new 1903ed8 API change: switch order of image viewer and callback arguments.
new db4cc04 BUG: Fix tests when FreeImage is not installed.
new 86f67f8 raise an import error if trying to run test suite without nose
new 7455479 STY: Align multi-line string statements.
new c9bef5e Merge pull request #222 from thewtex/freeimage_error_2
new 11c7fd2 Add function 'concatenate' to ImageCollection
new f676152 add stefan's image class
new d2e0484 add html repr method for Image class
new 605a4e2 add support for serializing to file-like objects (e.g. StringIO) to PIL plugin
new 62ce6f3 Add test for ImageCollection.concatenate
new 70cf6cf fix test so it looks for new Image class
new 736b92a Updated Image Segmentation tutorial
new 32d3e1b use repr_png and repr_jpeg hooks rather than repr_html these will work in the ipython qtconsole as well!
new a61ac37 Add concatenate() support for MultiImage
new a130b8d Refactor geometric transforms.
new 46f6733 added xyz2lab, lab2xyz not quite working
new 3b7ab0d corrected plot title
new bb1add8 BUG: Ignore colorconv RuntimeWarning:invalid value encountered in true_divide.
new 9006c1d Sort files from a global pattern alphanumerically
new 6b591e2 Add PlotPlugin and cleanup code.
new 4b53c92 BUG: Fix OTSU thresholding tests with matplotlib IO plugin.
new 699b5d9 Add test coverage for alphabetic sort
new afd33af Add LineProfile plugin.
new 0518528 Merge pull request #225 from lct123/ImageSegTut
new 37e0ce0 Merge pull request #223 from jni/jni-concatenate-image-collection
new 1b89ae8 Merge pull request #228 from thewtex/color_numpy_warnings
new 67eb914 TST: Add buffer for threshold tests.
new 47d5f02 Fix: Move on_draw method to base Plugin
new d615235 Merge pull request #227 from thewtex/thresholding_failures_2
new fedad0d fixed array being modified in place. lab2xyz working
new 74cde28 allow qt_plugin imsave() function to write to file-like objects
new fbb2ec3 close temp StringIO buffers when we're done with them
new 9cbf2ef Simplify alphanumeric_key logic
new 149ad7e Merge pull request #219 from wilsaj/remove-nose-message
new 8cd912a tests added for xyz2lab and lab2xyz
new dcb7dac open buffer on on byte_array
new fb3f201 Clean up old code and add docstrings.
new bd3ee78 Delete overlay when deleting plugin.
new c07a76b Merge pull request #1 from stefanv/projection
new 9f0449e Add docstring for `overlay` and reorder methods.
new c21fe1c Show coordinate and intensity info in status bar.
new 221cf73 Add plugin names
new 4739165 Add `update_on` parameter to slider and allow update on release.
new 48ac757 Refactor image overlays to special plugin base class.
new 5171121 Move OverlayPlugin and PlotPlugin to their own modules.
new 4d74772 Change ImageViewer to automatically call plugins.
new 31c2810 ENH: Align image and plugin windows
new bc6c816 Fix `add_argument`.
new 887a911 ENH: Simplify creation of Slider widget.
new 9b4c622 ENH: Rename callback functions for clarity.
new 385382f ENH: Simplify widget addition.
new 3271e21 ENH: Move closeEvent definition to base class.
new f971c25 remove some blank lines
new 0644958 ENH: Generalize add_widget function.
new 0f5d615 fix bug in estimation of similarity transformation
new 87c5777 reimplement implicit parameter functionality of transformations
new be6bb0c combination of two transformations of the same type result in this type again
new 2ae4dd4 fix scale initialization in implicit composition of similarity
new d9a88c9 add doc for and restructure polynomial coefficients
new 86b4289 ENH: Allow `Plugin.add_widget` to hook into Plugin attributes.
new 9d1df0c Make alpha value to ClearColormap adjustable.
new f47312a API Change: Attach ImageViewer to Plugin after init.
new df18d40 Minor cleanup.
new 71a518c Merge pull request #226 from jni/jni-alphanumeric-sort
new 977d171 Change image_viewer to Plugin property.
new 92ca837 ENH: Let Qt handle most of the window sizing.
new 36b0fbd Rename (dis)connect_event to (dis)connect_image_events.
new daae405 DOC: Add todo note
new 0e8f444 ENH: Display overlay by default
new 1ae662f ENH: filter image when Plugin is attached to ImageViewer
new 4b3f6d6 BUG: in-place add should return object
new 6182cc9 ENH: Add example of adding widgets to plugin
new c1a859a ENH: Change inplace-add to normal add to support alternate syntax
new c2d2919 BUG: Don't override `image_filter` method if defined by subclass
new f3024fc simplified hog code + extra unit test
new aa92d5f Better handling of labeled pixels in random walker segmentation when we return the whole probability.
new ab44219 Merge pull request #234 from bdholt1/fix-hog
new ff98b05 STY: Remove unused `add_artist` method.
new 8652606 DOC: Improve docstrings for ImageViewer.
new a31e0d9 remove superfluous conditional logic
new 7368332 remove unused import
new b9d468b use standard conventions for Image.__new__() cls attribute and docstring
new 2b66f0c role duplicate logic for Image._repr_png_() and Image._repr_jpeg_() into a common method
new 51e61b3 DOC: Improve docstrings for Plugin class.
new 260a336 ENH: allow color to be set by name
new d72baa4 STY: reorder methods for clarity.
new 49bdc3a DOC: clean up docstring for PlotPlugin
new f261e76 DOC: cleanup docstring and reuse parameter defined by parent class
new 9285898 DOC: Add class docstring
new 03d037d ImageCollection now slices like other iterables
new 3448e41 ENH slight cleanup, fixed *1000 bug, added test and rgb2lab convenience.
new 539b12d STY: Refactor MatplotlibCanvas from ImageCanvas and PlotCanvas.
new 4620ee7 ENH: Create new Slider with editbox.
new 117d13a Revert modifications of IntelligentSlider.
new 7615a85 Remove lineprofile temporarily (saved in a branch)
new 1290705 Remove unused import
new 449f3e4 STY: Refactor BaseWidget from Slider and ComboBox
new b6045a8 BUG: Fix behavior when initial overlay limits are bad.
new 1000c73 DOC: Explain use of callback parameter.
new 7d533e1 DOC: Add explanation of add operator.
new 3340d06 BUG: Fix scaling when setting default slider value.
new b54817c minor cleanup of comments & move ref_white to global lab_ref_white
new f74ca86 MISC minor cleanup in doctests / examples
new ce017cc ENH: Add Slider `value_type` to allow int values.
new acde86f Merge pull request #2 from amueller/dharhas-lab-color-space
new 8b544f2 Merge pull request #230 from dharhas/dharhas-lab-color-space
new f614afa fix orientation of regionprops with correct quadrant determination
new 13caa41 BUG: Rename modules with duplicate function names.
new 8a340cc BUG: more module renaming to prevent duplicates.
new b8c0663 Add segmentation setup.py for felsenzwalb algorithm
new 967eb5b ENH first draft of felzenszwalbs graph based image segmentation in Python
new e2d60f0 ENH using union find from morphology module
new b1b1c34 MISC remove debugging tracer, unnecessary variable.
new 40ecdd2 ENH naive pure python implementation of quickshift
new eb5c2fe ENH fixed stupid bug in quickshift, example
new 8c735b6 ENH start cythonizing quickshift, get rid of hstack.
new de52692 misc Uncomment Felzenszwalb as it is not messing with quickshift.
new 48fa325 ENH reasonable speed.
new b977d59 Color example :)
new be4b44b ENH CRAZY speedup
new cb3dba7 Bigger example
new 58237a5 ENH dirty fix, works though. Starting profiling.
new 888d176 ENH much faster.
new 461d4be forgot a line :-/
new 0c19899 enh cythonizing some arrays
new 7a5e7e4 ENH reasonable speed for felzenszwalbs's segmentation
new 07fb8d0 ENH felzenszwalb for color images
new 80b439b ENH Polish examples.
new 83616f0 DOC more docs....
new 9a8cb48 misc remove profiling outputs from quickshift
new 4d10749 DOC document and export felzenszwalb_segmentation_grey, prettify plots for the web.
new ce26467 ENH: make quickshift more tolerant to input type, just convert to float. Also keep track of random seed for reproducable tests. Finally, do a unique on the output and add testing.
new 8fa5427 FIX build problem and cython problem resolved.
new 08df2a5 enh: minor simplifications
new f0a7212 ENH Rename parameters in quickshift, add "ratio"
new a7c98cb Remove felzenszwalb_segmentation_gray again since it just complicates the interface.
new d2e226f ENH tests for Felzenszwalbs segmentation, fixed off-by-one error
new 05cc863 First draft for numpy based km_segmentation
new ccfb89b FIX Tried to address @stefanv's comments on the PR.
new 49bc44c FIXed test to work with the fixed "hashing" of colors
new a779952 DOC updates CONTRIBUTORS.txt
new 7b646ad fix trying to make this implementation more like slic
new 8f24366 starting cython implementation of km_segmentation
new 501a6db ENH speedup, means and image use pointers
new 1c69adb MISC some simplifications, minor speedup
new d9a22d8 Documentation, example for km_segmentation
new 026b6b1 Fix initialization in km_segmentation, prettier examples
new cd1007a Rename km_segmentation to slic. They have a PAMI paper now so I guess we should use their name.
new b6059b5 Put RGB2Lab into slic as it seems to be essential.
new 54af417 ENH: Add RequiredAttr to raise warnings when attr not set.
new 9ac4272 DOC: Clean up docstring for Slider
new 4ab583b ENH: Add SaveButtons widget.
new 398b320 BUG: reset image when plugin is closed.
new e96aca5 ENH: Add OK/Cancel buttons
new cfd0b84 STY: Tweak button sizes.
new 8e28e39 add test case for correct quadrant determination
new 9f0d000 Merge pull request #238 from ahojnnes/regionprops-orientation
new 1746d2c Some scaling issues to be closer to reference implementation
new d770fc7 quickshift: convert to lab in function, some comments in code.
new 10934cf Fixed bug in SLIC smoothing
new e65d6f6 Added smoothing option to quickshift
new ec6a176 merge segmentation examples
new b1eb426 Post-processing for felzenszwalbs algorithm.
new f22ae28 Pep8
new 8098718 Fixup tests, add test for slic.
new 1db4ebc MISC some typos in Example, titles set.
new 530f2c3 pep8
new e0034e3 Minor fixes addressing @tonysyu's comments.
new 73dd460 FIX width/height trouble, add non-regression test
new f421587 ENH renamed "felzenszwalb_segmentation" to "felzenszwalb", remove debug output from slic
new f560346 Trying to avoid name collisions.
new 75e3067 DOC a bit nicer figure
new 816d6e3 Merge pull request #221 from jjhelmus/imagecollection_slicing
new a05c3c6 DOC: Add note about ImageCollection slicing.
new ea02bc6 make figure smaller again.
new 34af272 Initial commit of adapthist modifications.
new 819332b Tests pass and example works on build.
new 045f627 Added Notes to the docstring.
new 7dc1733 Pep8 fixes.
new 0e957da Replaced generic ACM license with the Graphics Gems IV license.
new eb1e711 fix and improve estimation of geometric transformation parameters
new 5445255 fix incorrect comment
new 70153ab BUG: fix import of Cython extension.
new e4dd658 STY: PEP8 and other clean up.
new e1caa9d Update function names that were changed since original PR.
new e5ed188 fix and improve comments, doc strings, variable names for consistency reasons
new 5085ded fix geometric transformation example after refactoring the module
new 1bb896e remove confusing comment
new 76931fa handle composition of transformations with implicit parameters with __init__
new 8e242d0 add mathematical description of estimation in doc strings
new ff1c8c4 fix typo
new 9cea60d STY: minor PEP8 change
new a3ec8e0 change inverse_map parameter handling of warp function
new 724a931 adapt geometric example script to new API and improve some expressions
new 8ab0c9a add test for shape of transformation matrix
new c7cac1c fix, improve and extend test cases related to geometric transformations
new 08f4379 add information about unit of angles to doc strings
new 6ead309 cast input of image label function
new f88a29b ENH minor speedups.
new 8f5337a ENH added some cdefs
new 312b03d ENH more speeeeed
new 8d769a4 ENH Felzenszwalbs segmentation somewhat faster
new a75b7ca Merge pull request #247 from ahojnnes/label-dtype-fix
new a87779b fix num_peaks parameter bug in peak_local_max
new 55a3f22 Improved support for color images using lab transform.
new d9926d8 Passed all tests with full coverage, PEP8 and Pylint performed.
new 4541146 raise exception if matrix and implicit parameter arguments provided
new 9bd4457 add note about to display protocol to Image docstring
new fabedb5 add unit test for Image._repr_png_() with PIL plugin
new 4e50fd2 Merge pull request #197 from ahojnnes/projection
new b1139c7 DOC: Fix typos in see-also references.
new f768570 PKG: Add python-qt4 as a recommended dependency.
new bb27e37 extend test cases for num_peaks parameter of peak_local_max
new c131a20 Merge pull request #249 from ahojnnes/peak-local-max
new 31ba6a5 BUG: Fix Orientation for diagonal regions in regionprops.
new 5efb3d4 Wrap long lines.
new 3a98651 Merge pull request #252 from gatagat/patch-regionprops
new 1ea4117 BUG: Rename files with similar function, python module, and cython extension names.
new e6d03ea STY: Use standard skimage data type conversion.
new 90e61e2 Merge pull request #240 from tonysyu/rename-duplicates
new d0870c6 ENH: initialize AffineTransform to identity when no args are provided
new 33a19a8 DOC: add comments to clarify algorithm
new 29c84a8 STY: Rename returned image to distinguish input from output.
new 2724f50 FIX: added default identity matrix to SimilarityTransform to match AffineTransform
new 969772c ENH: Add reconstruction by erosion.
new 7a56a7f DOC: Clarify code comments and docstring
new ab7626d STY: Rename variables for clarity.
new 79fca0e DOC: Reorder docstring sections.
new 2e87dd7 ENH: Add examples of morphological reconstruction.
new 3ad1ed3 DOC: Remove peak detection tutorial.
new b614b34 ENH: Add test of reconstruction by erosion.
new 195bdc8 complete default matrix initialization of geometric transforms
new 6ea4827 add test case for polynomial transform initialization
new d511bd8 fix comment
new 80e72c1 Merge pull request #1 from ahojnnes/default-params-geometric
new b5d9106 ENH: Use Cython data types instead of Numpy dtypes.
new 682f064 DOC: Fix docstring to match rank order.
new 3fe0325 DOC: Combine examples for finding spots and filling holes.
new b1007f0 ENH: Add regional maxima example
new 4d1d6a4 Merge pull request #254 from jaberg/default_AffineTransform
new 6410905 BUG: Fix broken import in ctmf.
new f426355 DOC: Update development guidelines.
new e5bbcea DOC: More coding conventions.
new 37c0ffe cosmit: changed the names of x and y to r and c. that was no fun, i tell you.
new fe2a433 ENH addressed (hopefully all) of Tony's and Stefan's comments.
new d9444e7 add local binary pattern texture analysis
new 82868dd apply PEP8 guidelines
new 6afd8cc merge contributors changes
new fa352ba fix typos in doc string and comment
new c9709ca add example script for local binary pattern
new 2efa339 move local binary pattern example script
new 234fb68 make local binary pattern example script use skimage sample images
new 7cbe3db add plots to local binary pattern example
new a6bdda8 rewrite local binary pattern in Cython for performance reasons
new bfa5578 fix bilinear interpolation when position outside of image
new 55c3ec8 fix test cases for local binary pattern
new 0fbbed5 improve doc string of local_binary_pattern function
new 75c7926 use new subplots function in example script of LBP
new 0ca7933 Share bilinear interpolation function for other code
new 70b7745 Use shared bilinear interpolation function and improve performance.
new 6cefa4a Wrap column
new b5e2b01 Add doc string to bilinear_interpolation
new 53472b8 Rename matrix transform function and remove from pxd
new f11b76e Add full-stop at end of short doc string description
new 777bb59 Remove unused imports and wrap text
new 37f5ab4 Fix typo in doc string
new 36b22d7 Use numpy dtype objects instead of strings
new 2b7cb5f Make different methods of LBP more readable in Cython code
new 321e3ae Add doc string to Cython version of LBP
new 70a69eb Improve printed output of example
new 26a84fb Add plot labels
new 014b490 Fix import bug due to rebase
new d7d1fae Fix bug in skeletonize LUT
new 25d94b3 fix hog.py - orientation and visualization
new 298c1f1 fixing multiple bugs in hog.py, adding two tests to test_hog.py
new 6761f13 fixed imports
new 673d4ec several fixes and 3 new tests for Histograms of Oriented Gradients
new 56cbdf6 Merge pull request #244 from pcampr/master
new 6b1dab9 MISC move felzenszwalb_cy.pyx to _felzenszwalb_cy.pyx, don't use xrange when not necessary
new 73332f9 Merge pull request #239 from ahojnnes/texture
new b4fa79d Merge pull request #206 from amueller/felsenzwalb
new 39569e8 Merge pull request #256 from NeilYager/skeleton_fix
new 1c3aeec BUG: Remove uses of xrange for py3 compatibility.
new d87ed28 Add new package for shared code
new 824997a Move bilinear interpolation code to shared package
new 7247384 Add integrate function to shared package
new ba17193 Remove unused imports
new 3b227e2 Add nearest neighbour interpolation
new a08779e Use predefined header files from Cython
new c471d47 Refactor pnpoly function in Cython and add to shared package
new 878554a Fix indentation
new 20afa7e Add doc string to point in polygon functions
new dc91a0e Add empty line between functions
new 38a96b9 Remove tag metadata-related fucntions from Image class
new de20e48 ENH: Allow imshow to show images when given file name.
new ffe2eba BUG: Update filter when edit-box is changed.
new 9731d4c Simplify code by removing duplicate loops
new 1ac289c FIX: corrected docstring for transform.warp
new 0749f8d FIX: transform.warp supports cval outside 0-1 range
new e710fac Added test case for warp() when cval out of clipping range
new c22a176 ENH: moved code generating coords out of warp() to _warp_coords
new ce200f5 ENH: test_warp test case to make sure _warp_coords works for grey and rgb images
new e3585ad ENH: renamed and docd _build_coords -> warp_coords
new 96c0225 ENH: test warp with data.lena instead of scipy.misc.lena
new 5cce39a ENH: remove call in tests to deprecated homography fn
new c5dc55c ENH: better docstring and test for warp_coords
new e859520 FIX: doctest of warp_coords
new 47c0a50 ENH: warp_coords docstring
new 3e6a6e3 ENH: stricter check on test_const_cval_out_of_range
new 8faf148 FIX: wordwrap to 78
new acc86a5 FIX: docstring mentions inverse instead of inverse_map
new 58bddb1 Remove empty line
new f750e63 Fix test cases of warps
new f53e19e Merge pull request #253 from jaberg/warp_cval_outside_unit_interval
new 449b870 Merge pull request #255 from stefanv/coding_conventions
new 53807d7 Merge pull request #233 from wilsaj:image-html-repr
new 5166e3c DOC: Update development guidelines from PR 255 feedback.
new 3167a07 add polygon approximation algorithm
new ec3ed52 add example script for polygon approximation
new 77e4c37 remove unused import and code from polygon approximation example
new 74b358a remove colons in comments
new add94d2 make loop condition more readable
new dcbea75 improved polygon approximation example script
new 40c58f3 add subdivision of polygonal curves using B-Splines
new 339c33e add note about size if resulting polygonal curves
new 76c3574 update polygon example with subdivision
new f267f65 add test case for subdivision of polygons
new 02bf713 add some more comments to subdivision of polygons code
new 22a8907 make subdivision mask code more readable und debuggable
new 50df20f fix wrong parameter name in doc string
new 26f6bd4 add test case for non-circular subdivision of polygons
new 8ff2639 Add possibility to preserve ends and update tests
new f9c81e9 Update subdivision example with preserve_ends parameter
new e631d55 Merge pull request #250 from ahojnnes/approx-polygon
new 8cdd0e9 Merge pull request #258 from tonysyu/imshow-filename
new eccc419 BUG: Remove print statement that caused py3 tests to fail.
new 7ad4b91 Add support for boolean dtype conversion
new 4b303f3 Update test cases for boolean dtype conversion
new 0460479 [BUG] fixing import problem
new ecd4fb7 DOC: Add intersphinx so we can refer to numpy, scipy, sklearn docs.
new 7490322 Merge pull request #229 from tonysyu/qtmpl-viewer
new 28161ea ENH: better handling of labels that need to be reordered
new e6118a5 BUG: Workaround to unit tests failing if PyQt4 not available.
new 118aee9 Merge pull request #261 from emmanuelle/fix_import_glcm
new 786821c PKG: Update release notes, plot_pr.
new 3e6a51c Add bool dtype range
new c47e69b Merge pull request #260 from ahojnnes/convert-bool
new 2c84a21 Remove custom dtype range
new 2c0ff05 BUG: Closing ImageViewer shouldn't quit parent program
new ebf4b44 BUG: Adjust pixel limits based on image data type
new af708d2 Fix typo in Cython compiler directives
new 50d1843 Optimize fast homography
new 3f8d000 Merge pull request #266 from tonysyu/viewer-fix-hard-exit
new 945349f DOC: Improve description of reconstruction
new 666d6f4 DOC: Bump up Cython version up to 0.16
new 3c14898 Merge pull request #267 from tonysyu/viewer-adapt-dtype
new 544fec7 Merge pull request #215 from tonysyu/morph-reconstruction
new b14514e BUG: Fix nosetest and autodoc errors when PyQt4 not available
new be33941 Change error to warning so that autodoc doesn't fail.
new ce423e1 Merge pull request #257 from ahojnnes/shared
new ac41a4b Merge pull request #269 from tonysyu/viewer-fix-doc-and-test
new e350db2 Change reconstruction to support Cython 0.15.
new 69207c0 BUG: fix import of rank_order
new 90420f0 Merge pull request #270 from tonysyu/cython-0.15-compat
new c11e65b Merge pull request #262 from stefanv/doc_intersphinx
new 76f75c8 Fix C-contiguous array bug in match template
new 32afefe Fix doc string of texture detection
new 24d1b20 Delete unnecessary file
new 4fe9f39 Fix shape format of arrays in doc strings
new 7acb9f9 Fix short description in doc string
new e9b8645 Fix parameter format in doc string of peak_local_max
new 83a52f4 Capitalize parameter descriptions in draw package
new fc78594 Fix examples of exposure package
new db9af0d Capitalize parameter descriptions in geometric transforms
new 00b3e90 Fix description of polygon example script
new e7f2b0f Merge pull request #274 from ahojnnes/doc-update
new 24ef77e Merge pull request #273 from ahojnnes/draw-file-deletion
new 8084faf BUG: Fix division error for Python 3
new 7d8bc48 ENH: Change assert statement for better error output
new 6de72cc Merge pull request #276 from tonysyu/reconstruction-fix
new 9d29d5d PEP8: indentation in random_walker_segmentation
new b0d3c05 Merge pull request #272 from ahojnnes/template-contiguous
new 8d54380 Merge pull request #259 from emmanuelle/fix_random_walker
new 0644026 Fixed two tests that were failing because of draw imports
new 5711519 Merge pull request #277 from emmanuelle/fix_tests_draw
new bc1582c acronym --> full name of algorithm in example
new 14d0923 fixed data of tv_denoise result images with float datatype to be in default range [0.0:1.0]
new 0293403 DOC: example in slic segmentation docstring
new 77f1e0b Add deprecation warning in doc string to homography
new a6532a8 Refactor image warps
new cfea01b Fix import error in geometric test cases
new 772a1cb Update radon transform with new warp function
new a064979 Fix doc string example of warp_coords
new 6f4c2ad Add function for image rotation
new 6ec4c21 Fix import of rotate function
new 00e1d14 Fix rotate translation bug
new c0538c0 Fix translation bug in image rotate
new f4a3b44 Rename parameter of image rotation
new 9a46111 Apply numpy doc style for deprecation warning
new bcf4594 use existing functionality for fix
new 06065f6 PEP 8: _quickshift module
new d5710c8 Example in route_through_array
new 6b86d4b DOC: docstring of route_through_array
new 501c401 Move image transform functions to _geometric file
new 7bbb0aa Fixed deprecated threshold.
new 99e4264 Add missing return type to matrix transform function
new f8e0dcf Fixed layout (bracket alignment).
new 8955dad Multispectral modifications applied to random walker.
new feca48c Added return_full_prob kwarg to solve call if pyamg not present.
new bb51f62 Add function to clear border in binary images
new 156b484 Refactor clear_border for better performance
new 1177cf1 Move clear_border to segmentation package
new 42ae537 convert image to float before performing tv_denoise operation now removed keep_type argument from tv_denoise which becomes obsolete with the previos change adapted tests
new 682d053 Added multispectral random walker test.
new 6132095 Changes based on PR review recommendations: input format, scaling, and bugfix.
new 99238c4 sqrt(gradients) line removed
new 9b44e24 Use function pointer for different interpolation methods
new 7a0e0b8 Simplify mode determination
new abe5dc3 Add (bi-)cubic interpolation
new bbeaec6 Add examples to doc string of clear_border
new dd45f15 Use explicit keyword for dtype
new 1592e47 Apply clipping also to fast cython implementation
new cb870fd Fix example of estimate_transform
new 4dfdc7f Update doc string of _warp_fast for bicubic interpolation
new 4cd1f87 Add nearest mode for positions outside image
new 146d5a3 Remove duplicate subtraction
new 15cc7f1 Add biquadratic interpolation
new b2036ae Add image resize function
new 38c3eb5 Merge pull request #248 from ahojnnes/clear-border
new cdff128 Add new Coordinates property to regionprops
new da3f2b5 Add example script for image labelling
new 873aa6a Merge pull request #281 from mkcor/harris_threshold
new e8ddcef PEP8 compliance, removed `scaling`, different data parsing.
new 6e9d6e2 Improve visualization of labelling
new c929171 Update description with more detailed explanation of applied steps
new e3c68e3 Merge pull request #284 from ahojnnes/regionprops-coords
new f360316 Explicitly define colormap
new 0609202 Merge pull request #285 from ahojnnes/label-example
new b2e4fd6 Add parallel execution support
new c8c1d5c Merge pull request #275 from ahojnnes/warps
new 06d9f71 Revert to non parallelized execution
new 74797d6 Fix decision whether to use warping or fast warping
new b05c062 Refactor erosion and dilation for better performance
new a5fe574 Remove unused imports and add missing types
new 6facfd2 BUG: Bento version must end with number
new 2314cfd ENH: Add script to check that bento.info is up-to-date.
new ed05b88 BUG: Update bento.info to match setup.py files
new f500ed0 Merge pull request #288 from tonysyu/bento-update
new 7d858a8 ENH: Add CollectionViewer
new 41ea3ba Add line profile plugin back in.
new 224fcb5 Convert selem to uint8
new 2842515 Improve doc string layout
new de47332 Add fast morphological operations for binary images
new 373b329 Use numpy testing functions
new 2c37c70 Fix support for predefined output array
new 53b1860 Merge pull request #287 from ahojnnes/morph
new 1dc50c1 Merge pull request #290 from tonysyu/qtmpl-lineprofile
new c47e230 Merge pull request #289 from tonysyu/qtmpl-collection-viewer
new aa08e8a Fix for predefined output array
new 0db4893 DOC: Fix broken doc build due to broken import
new 58a5723 Merge pull request #282 from JDWarner/multispectral_random_walker
new bd0d47a DOC: Turn off numpydoc flag to silence warnings
new 8b15656 Change import to silence import errors in docs.
new 12c3590 DOC: Separate config sections in conf.py
new ded9c93 Merge pull request #291 from tonysyu/sphinx-import-warnings
new a9116f8 Hide coefficient variable of geometric transforms
new 12b8d8d cleanup of tests hence all results of tv denoise operations are returned as float
new c851053 specified float array result in docstring
new 9f65d08 Merge pull request #292 from ahojnnes/geometric-coeffs
new 4d1533a Merge pull request #278 from wuan/tv_denoise_fix
new b1098f6 DOC: removed unused import in docstring
new 0a92bf8 DOC: Remove inheritance-diagram Sphinx role.
new e6ca084 DOC: Remove inherited-members Sphinx role.
new 0643b81 DOC: Remove commented out code.
new ec22dba DOC: Fix Sphinx warnings for regionprops
new bfa6f05 DOC: Change title to match numpy docstring standard
new 1d91ed9 DOC: Fix Sphinx warning.
new dc10efe DOC: Fix formatting to prevent Sphinx warnings
new 3983447 DOC: Reformat shape argument
new 84ac919 DOC: Fix citation syntax
new d67e817 DOC: Shorten plugin description so it fits in table
new 27cac73 DOC: Fix section titles to match numpy doc standard
new 52b5383 DOC: Fix rendering bug.
new 3321e94 DOC: Wrap long lines
new 2ce8d89 DOC: Integrate uncompleted Scipy2012 Sprint tasks
new 427a79f STY: Clean up whitespace
new dfbbb4d Merge pull request #279 from emmanuelle/fix_doc
new 2949d18 Merge pull request #295 from tonysyu/doc-cleanups
new f224602 STY: Clean up imports
new 92f8643 Initial work to introduce piecewise affine transform
new be11430 Achieved functional piecewise affine transform
new 07d4e33 Update doc strings with piecewise affine
new 5617bc5 Improve comments
new 839442a Improve comments
new ea5fe5f Setting _matrix to None, because the transform is not of this form
new 3e3e092 Wrap long line
new 6e3d460 STY: Rename tests.
new b7cc8d5 Merge pull request #286 from TimSC/master
new 87a3025 BUG: Add missing imports in transform module.
new 7983f35 Apply PEP8 and improve docs
new c1f3515 Speed up transformation of piecewise-affine
new 33151f4 Add missing doc string for inverse transform
new d541eba Implement inverse transformation for piecewise-affine
new 3f7d962 Remove unnecessary params section in doc string
new 65879a2 Fix fast warping of images
new f79012f Add note about coordinates outside of mesh
new 6774788 Fix inverse piecewise affine
new 05ae17e Add test cases for piecewise affine
new e16a6d3 Fix typo in polygon example script doc
new 53edb67 Add example script for piecewise affine transform
new aff6069 Add mesh points to plot
new ef5e31d Merge pull request #297 from ahojnnes/piecewise-affine
new 852481e TST: Add tests for masked region
new bd2f8ac DOC: Add note about expanded masking
new 6c9810c Refactor masking
new 367e390 STY: Rework masking based on suggestions by @ahojnnes
new 2ab3e2d Merge pull request #298 from tonysyu/edge-masking-tweak
new d7bf0c5 Add Coordinates property to property list
new 3b6d7ad Merge pull request #299 from ahojnnes/regionprops-coords
new fe41023 STY: Refactor initialization of QApplication.
new d1e012e BUG: Initialize QApplication when creating Plugin.
new 4449df2 Merge pull request #300 from tonysyu/viewer-qapp-fix
new 0344e51 Add function to build gaussian and laplacian pyramids
new b7ac633 Add missing references
new c570855 Rename file of pyramid functions
new eaed3df Add tests for pyramid functions
new db56472 DOC: Add quickstart for viewer to User Guide
new d98a92a ENH: Set viewer min-intensity to zero when possible.
new 5a632dd STY: Clean up formatting and remove repeated imports
new 72623c6 TST: Add Travis configuration based on nipy's.
new 560dac2 FIX: configure just skimage logger on import
new ed8f214 ENH: default logger blocks messages from global handler
new df75606 Merge pull request #303 from jaberg/local_logger
new c42b3d6 Fix wrong factor in pyramid_expand
new b7e965e Fix singleton dimension for 1 pixel image
new 2780ae6 Make pyramid functions generators
new bccbc36 Use consistent dtype for all levels of pyramid
new f078854 Rename factor parameters for better comprehensibility
new e6675dc Add example script for image pyramids
new 8e14f5f Add missing 0th layer of laplacian pyramid
new 6142df6 Update doc string return type of image pyramids
new c477c7b Remove unnecessary C-contiguous flag
new 757c497 Add test case for memory order
new cc5533b Add dependencies to setup process
new ab58ed0 Improve code layout
new af0a866 Merge pull request #304 from ahojnnes/contours-array-fix
new 38f0ca3 FIX convert to (unsigned) integer from bool type
new f2a256e Implement own dependency checking before installation
new 2206681 Update pyramid example with longer description
new bab2f71 Use more readable variable name for image
new c9fd1f3 Add doc string to helper function _smooth
new b812faf Remove default parameter values from doc string
new f011a81 Update short description of pyramid functions
new c86d919 Add information about return dtype
new 43afda1 Use gaussian pyramid function for collection viewer example
new 8a75cc4 Update description of collection viewer example
new 0f175a8 Fix bug in laplacian pyramid caused by renamed variables
new 35ef270 Update legacy comment
new d922c96 Add another reference to laplacian pyramid
new a080624 Move comment to correct code
new 7766838 Remove unused import
new a218b6c Merge pull request #302 from ahojnnes/pyramids
new c3b5cd1 DOC: Add note about negative dtypes
new 2c55732 DOC: float dtype changed from (0, 1) to (-1, 1).
new 61be60c FIX: early fix for dtype conversion from bool to other type PR #306, Issue #263
new 07b258e FIX: multiply by the maximum value may change dtype
new 554487f FIX: issue sign loss warning only for signed type
new 1fc7729 Merge pull request #307 from kuantkid/inlinedisplay
new dc90c7a Make font-size of documentation smaller
new 67a238d Merge pull request #306 from tonysyu/doc-negative-dtypes
new 1e11dfa Merge pull request #308 from ahojnnes/doc-font-size
new d8ddcb1 Merge pull request #305 from ahojnnes/setup-import-warning
new cd4d50d Remove scipy build dependency
new 32578b3 Merge pull request #312 from ahojnnes/dependency-fix
new b1d99be Fix bug in grey erosion and dilation
new a7f36f5 Let travis build bot run tests
new 9572e1d Merge pull request #313 from ahojnnes/travis-tests
new 378357d Merge pull request #301 from tonysyu/viewer-user-guide
new f478b6a Fix bug in binary dilation and test case
new 56b1476 Add test case for non-square images
new db87b93 Merge pull request #310 from ahojnnes/morph
new ef06d4e TST: Invoke Travis nosetests differently.
new 2614853 DOC: suppress plot display in doctests
new 24f3b7d DOC: Fix block-formatting in doctest
new 0504392 DOC: Fix doctests in io collection module
new 7134a26 DOC: Fix array formatting in doctest
new fcf2a9b DOC: Fix doctests in viewer subpackage
new a58ce5b DOC: Add missing import in doctest
new 7a9cb80 DOC: Fix doctests in lpi_filter
new ae42901 DOC: rewrap docstring lines and remove unused import
new 538ce32 DOC: fix numpy dtype print out.
new a454b63 Merge pull request #314 from tonysyu/doctest-fixes
new 1108727 DOC: Replace doctest with literal code block
new b433e8e DOC: Remove plots from docstring examples
new 256319e Merge pull request #315 from tonysyu/doctest-plot-fix
new 56b4ba6 ENH: Bool dtype conversion speed improvements.
new 8494a18 Conversion to bool: threshold on half dtype max.
new 051f73f Merge pull request #311 from stefanv/dtype_bool_fast
new 81e49b6 DOC: Fix docstring note about conversion range
new f2d5b10 Add `assert_greater` compatibility function.
new 9b5be5e Merge pull request #316 from tonysyu/doc-img_as_bool
new 6d88490 Rename pyramid functions
new bfcc144 Fix typo
new be7476b Add more detailed description for pyramid functions
new bada678 Update name of pyramid function in pyramid example description
new 6c125ea Merge pull request #320 from ahojnnes/pyramids-fix
new 2cbe2e1 DOC: Fix attribution for testing function
new ee2092c Documentation fix for `labels` input in random_walker.
new b536252 Merge pull request #322 from JDWarner/random_walker_docfix
new 9cc77d1 Merge pull request #317 from tonysyu/testing-compatibility
new 6635cf1 [BUG] Corrected a bug in the random walker that appeared
new 03a701c Merge pull request #323 from emmanuelle/bug_rw
new 0dbb77a BUG: Fix homography.
new c54d8d3 Docfix for img_as_float; appended myself to CONTRIBUTORS
new 1dfb5f5 Merge pull request #325 from JDWarner/img_as_float_docfix
new 359e770 PKG: Remember to check that random.js file is correctly generated.
new 6c59e04 MISC remove unused imports, some pep8 corrections.
new c7c226a Merge pull request #326 from amueller/cleanup_imports
new a9d777a DOC: Add 0.7 release notes
new 37d9f56 PKG: Update version to 0.7.0
new 42c1bff PKG: Update docversions.js to 0.7
new bca8544 PKG: Use correct version in docversions.js
new 0477c9d Open image files in default binary write mode
new e979080 Fix ValueError: Buffer dtype mismatch on 64 bit platforms
new e346d6b Fix: round function is not provided by libc.math on all platforms
new 0cf5828 Fix: round function is not provided by libc.math on all platforms
new 97d595e Fix: 'inline' not permitted on data declarations
new 2695015 Fix: 'inline' not permitted on data declarations
new 5184be8 Document correct parameter types
new cba654c Use io.BytesIO instead of StringIO
new 5e899cf Merge pull request #332 from cgohlke/patch-8
new 3469f1f Merge pull request #327 from cgohlke/patch-1
new 55d7925 Merge pull request #328 from cgohlke/patch-3
new 08d8ff3 Merge pull request #329 from cgohlke/patch-4
new 397484a Merge pull request #330 from cgohlke/patch-5
new c841314 Merge pull request #331 from cgohlke/patch-7
new 6546460 COSMIT some pep8
new f4d59a6 PKG: Start 0.8 development cycle.
new 0250bb1 PKG: Clarify instructions for gh-pages.
new e1072ae PKG: Update release notes.
new 08ad58f Merge branch 'master' of github.com:scikits-image/scikits-image
new 186cab9 PKG: Add attributions to contributors.txt
new 7a90420 DOC: Change algorithm for depth of API generation
new b33d1c0 Merge pull request #334 from tonysyu/fix-apigen
new 0d748f1 DOC: Fix typo in release instructions.
new 127907f Add new doc theme
new e81ebcf Remove uncompressed bootstrap files
new b0f7481 Fix download link in navigation bar
new d690212 Rename scikits-image to scikit-image
new 236666f Rename scikits-learn to scikit-learn
new 0fed207 Merge pull request #335 from ahojnnes/doc-theme
new 4024969 DOC: Format gallery into a grid
new fe78be7 Merge pull request #337 from tonysyu/example-gallery-fix
new dd9e7f3 DOC: Save thumbnails with a fixed image shape
new 527e4b5 DOC: Remove task list from docs
new 0e1cc75 initial commit
new 0cda319 Merge pull request #338 from tonysyu/gallery-tweak
new 26f9186 paste code
new 5e97f1f Fix navigation docs link
new c6cf768 Extend CSS rule for all headings
new 060d92f Fix navigation home page link
new 39d0098 Merge pull request #339 from tonysyu/doc-remove-feature-list
new 9048031 DOC: Credit Johannes for website layout.
new 413db93 adjust code for new project
new 089f7ff Change domain name
new 1494bc5 Remove unused fopenmp compile args
new 44c069b Merge pull request #343 from ahojnnes/warps-openmp-fix
new 70a509b Revert changes to release notes
new 98b18da Add favicon for docs
new f3c89c5 fix. gitignore
new cbd1ec0 add test/
new f8f11ab mv test to tests
new 5a5cdfc rename using scikits naming conventions
new 483507f try to fix rank setup
new b2c413d rename some test to demo
new 6c19054 add demo all
new 8f0a207 add demo all (cont.)
new be4d866 add demo all (cont.)
new 806bbbc add readme
new 7b49a0e Merge pull request #345 from ahojnnes/docs-favicon
new 3126399 Merge pull request #342 from ahojnnes/domain-name
new c2d308c Add function to scale images
new 8ca068e Add test case for separate scale factors
new 17c7d10 Rename scale function to rescale and scale variables
new 1fa4bd3 Enhance short description of resize and rescale functions
new 37e8345 Fix doc version 0.7 link
new db3803f add py wrappers
new 4661dfb fix bitdepth in rank.py
new d9efa0b update setup to be compatible with scikits-image
new 5e14bf2 add percentile mean
new 007e136 add other rank filters
new fb6017e add percentile filters - in progress
new f5e4ae9 add percentile filters
new c4b091d add bilateral filters pop and meanµ
new 9b36d56 add full test
new 88d1b85 Merge pull request #347 from ahojnnes/doc-version-link
new 15251cd adapt tests
new 28cef2e add examples - to be cont.
new 31ab620 add readme
new 76f5156 Fix bug in warp which caused 1 pixel images not to be clipped
new 661d50e Full test coverage for image pyramids
new 59d3d84 Full test coveragem for data package
new 01df23a Full test coverage for canny filter
new bca962c Improve test coverage for ctmf
new fad2813 Fix callable test in LPI filter
new 00dbb5e Improve test coverage of LPI filter
new d1629ae Fix polygon approximation for 0 or less tolerance
new bee7223 Full test coverage for polygon approximation and subdivision
new db76b21 Full test coverage for regionprops
new aa85b22 Full test coverage for structural similarity
new 5117803 Improve test coverage of find_contours
new 48572fd Remove obsolete license note as code has been refactored
new 0ab93bb Remove redundant dtype conversion
new bc745e8 BUG: Pass package directory as positional argument to nose.run
new 500b1c5 ENH: Add grayscale support and color adjustment to visualize_boundaries
new 694ac11 STY: Rename visualize_boundaries to highlight_boundaries
new 41d5ebd Merge pull request #346 from ahojnnes/warp-zoom
new b16ba3d BUG: fix side-effect in util.montage()
new 7f26d99 Merge pull request #355 from npinto/patch-1
new ad53159 STY: Rename highlight_boundaries to mark_boundaries
new fb9de51 Merge pull request #354 from tonysyu/highlight-boundaries
new d43767b Merge pull request #353 from tonysyu/fix-test-setup
new 2c36d34 Change Exception type for wrong input dims
new fd07bd6 DOC: Rename skimage.org to scikit-image.org.
new 4946222 DOC: Remove confusing paragraph about dtype range.
new 2284b92 Merge pull request #357 from stefanv/doc_skimage_to_scikit-image
new b4b0902 complete singularization of scikit-image
new 8d2e3d4 Merge pull request #359 from ivanov/singular-scikit
new d79d1ff DOC: Clean up one last skimage -> scikit-image.
new 1ef13c1 PKG: Print something when bento check passes.
new ab2411c DOC: Add imports to doctests to fix errors
new 9b5cb1c Merge pull request #360 from tonysyu/fix-doctest-imports
new 48210ec Add note about random test failure for some systems
new e47411e Split tests for different channel numbers into separate functions
new dc0d4ef Add missing empty lines between test functions
new be9dcdf DOC: Fix pip command.
new b6b2eb7 DOC: Add imports to doctests to fix errors
new 3b67c82 Add support for 3-dimensional image resizing
new 0856dad Split 3d resize test function
new af2abfa Merge pull request #293 from ahojnnes/resample
new c17ffe6 Merge pull request #351 from ahojnnes/test-coverage
new 7741d90 Fix failing perimeter test caused by bug in scipy
new 635e75b Merge pull request #362 from ahojnnes/perimeter-test
new 0b531c8 add ref
new 203cdbd add comment to bilateral denoising example
new 36c12c5 compare local and global equalise in example
new c18f07e rename egalise to equalize
new edd39df clean-up code
new 0682939 Add hough transform peak detection
new f4bdd94 Add note about range of angle values
new 5fbdd91 Fix typo
new d9a7bac Refactor non maximum suppression for faster computation
new ede5df6 Add missing support for num_peaks parameter
new ee09822 Set constant value for maximum filter explicitly
new 2214123 compare ctmf.median_filter with rank.median
new 4f2dde5 add comment
new 935f424 fix percentile autolevel
new 5fdc11c fix percentile autolevel
new b55044e adapt autolevel example
new ec2278a fix 16bit percentile
new 7e7b1d4 clean-up code
new c1eca25 fix equalize
new c35f675 fix other equalize
new 2ada9ef add marked watershed example
new 3d268dd add marked watershed example (cont.)
new fee2df8 add marked watershed example (cont.)
new 29d133b add local test
new 76a02de remove unused _core
new 45cf1d7 add exhaustive comparison between 8bit and 16bit filters
new 58bc49d fix 8bit-16bit discepencies
new dec07b6 fix doctest in rank
new f10cc42 remove ascontiguousarray(eimage)
new 35e2e60 remoce sr,sc from cores
new b9f016a remoce selem_num
new 32d40f8 add comment
new 894cb13 rename n_se_n to num_se_n etc, removed commented code
new f22a014 Add scharr edge filter
new 04f21c5 Fix dtype and dim note for parameters in doc strings
new fbaa883 Fix reference links in doc strings
new 11d0d69 Merge pull request #365 from ahojnnes/ref-fix
new 1fbd664 Add reference for scharr operator
new be6f02b Fix stylistic indentation
new 37ccc80 Fix test case doc strings
new 239026a Add scharr filter to mask test cases
new e83a456 fix pxd-pyx confusion
new b9df840 restore setupfile
new 150fb83 PKG: Add attributions to contributors.txt
new c613bd2 DOC: Change algorithm for depth of API generation
new cc03023 BUG: Remove unused fopenmp compile args.
new 70d8a60 PKG: Set version to 0.7.1.
new d94da9a Open image files in default binary write mode
new 3817088 Fix ValueError: Buffer dtype mismatch on 64 bit platforms
new ebf04ba Fix: round function is not provided by libc.math on all platforms
new 415306b Fix: round function is not provided by libc.math on all platforms
new 1f23732 Fix: 'inline' not permitted on data declarations
new 15ebe7d Fix: 'inline' not permitted on data declarations
new 14b6a55 Document correct parameter types
new 4fa8bf8 PKG: Start 0.8 development cycle.
new 4fb7493 PKG: Clarify instructions for gh-pages.
new eadee6c PKG: Update release notes.
new 488df4e COSMIT some pep8
new 202ff4a PKG: Add attributions to contributors.txt
new 5619ee2 DOC: Change algorithm for depth of API generation
new 554ef0e DOC: Fix typo in release instructions.
new 16780e4 Add new doc theme
new a8f05bd Remove uncompressed bootstrap files
new 6b0e8eb Fix download link in navigation bar
new 2b7c20e Rename scikits-image to scikit-image
new 13480cd Rename scikits-learn to scikit-learn
new 4f807e6 DOC: Format gallery into a grid
new fcdefd4 DOC: Save thumbnails with a fixed image shape
new 73b8f1e Fix navigation docs link
new 70701a0 Extend CSS rule for all headings
new bd169ac Fix navigation home page link
new 403dc33 DOC: Remove task list from docs
new d153bfc DOC: Credit Johannes for website layout.
new 8de13dc Remove unused fopenmp compile args
new 8ebea19 Add favicon for docs
new 53ae03e Change domain name
new c1b39c0 Revert changes to release notes
new 5996854 Fix doc version 0.7 link
new 96d9043 BUG: fix side-effect in util.montage()
new 2a672cf BUG: Pass package directory as positional argument to nose.run
new 71cd4b2 DOC: Rename skimage.org to scikit-image.org.
new e05c029 complete singularization of scikit-image
new 5a560f9 DOC: Clean up one last skimage -> scikit-image.
new 28e0baf PKG: Print something when bento check passes.
new 0614287 DOC: Add imports to doctests to fix errors
new 11b742c DOC: Fix pip command.
new e2dec83 Fix bug in warp which caused 1 pixel images not to be clipped
new 7f100ac Full test coverage for image pyramids
new 87aa1d1 Full test coveragem for data package
new 38fe487 Full test coverage for canny filter
new 91b5c28 Improve test coverage for ctmf
new 0387e4a Fix callable test in LPI filter
new e428285 Improve test coverage of LPI filter
new 96799d4 Fix polygon approximation for 0 or less tolerance
new 4fa4e19 Full test coverage for polygon approximation and subdivision
new 5dded43 Full test coverage for regionprops
new 65fdc2a Full test coverage for structural similarity
new 95d66ac Improve test coverage of find_contours
new 08889ba Remove obsolete license note as code has been refactored
new b70f279 Remove redundant dtype conversion
new 615f681 Change Exception type for wrong input dims
new 4bfd4f9 Add note about random test failure for some systems
new 9741ac7 Split tests for different channel numbers into separate functions
new 633cb06 Add missing empty lines between test functions
new 794920c Fix failing perimeter test caused by bug in scipy
new 06d347f Fix reference links in doc strings
new b5d4409 PKG: Set version to 0.7.2.
new c144349 PKG: Temporarily disable failing gradient check.
new e6d43d4 Merge branch 'v0.7.2-prep' into v0.7.x
new ed82b35 remplace int by Py_ssize_t and fix some doctests
new b2e4827 remplace int by Py_ssize_t and for rank8
new e5e01e3 remplace int by Py_ssize_t and for rank16
new ae73da9 remplace emask with is_in_mask function
new aa131ce add comment
new 3dd08d7 remplace emask with is_in_mask function in crank16
new f62b8d0 group core8,8p and 8b
new e47ef3b delete core8p
new 3ba95a7 group crank16 and crank16p
new 4fd0857 delete core16p
new 9079d00 grou rank16 and rank16b, remove core16b
new de164ce find error in autolevel and percentile autolevel (16bit)
new 2ce1a02 fix error in autolevel and percentile autolevel (16bit)
new 516cb8f add histogram_increment and decrement to core8
new b35c4a6 add histogram_increment and decrement to core16
new 64c37c4 keep true test in /test, move temporary tests in local
new 6e396f8 clean up
new 35ebb64 compare ndimage.percentile in demo
new a9dac36 add _apply(func8,func16,...) helper function
new a829135 Improve description of scharr and sobel edge filters
new 2342cdd Merge pull request #364 from ahojnnes/scharr
new 120571b BUG: Allow RGB images to be passed to grey2rgb.
new 4a0564a Add is_rgb and is_gray.
new b080773 Use common file for denoising filters
new 25867b9 Improve doc string format of TV denoise functions
new 75d706c Add get_pixel function for 3D arrays
new f9ecd14 Add bilateral denoising filter
new cec7b60 Restructure cdef declarations
new 3757e5c Use common file for denoising filters
new 7967d5f Refactor denoise tests and add tests for bilateral filter
new e39012a Add more detailed description of bilateral filter
new 8de3ec9 Add example script for bilateral denoising
new 415a3c6 Wrap column
new 52962f3 Reorder subplots
new 62c1bec Fix description of denoising filters
new 1a1560f Fix PEP8 issues
new 108cbf9 Fix typo in doc string of biliteral filter
new b2da237 autopep8 sources
new 5b8f554 Rename tv_denoise to denoise_tv and deprecate
new c04f14c Combine 2D and 3D bilateral filter in one function and rename sigma parameters
new 2cdb389 Remove unused import
new dd421dc Add note about range of values of sigma_range parameter
new a41163b Add Cython denoise source file to bento file
new c3a37a8 Merge pull request #367 from stefanv/gray2rgb_for_rgb
new 82d20ca moved example to doc
new 491f53a removed useless tools.py
new 381fdf9 modify CONTRIBUTORS.txt
new 8d219d1 __docformat__ removed
new e618c1d move rank/ into filter/
new 53deddf cut long lines
new ce0a609 autopep8
new 662ac30 add example modal
new 8f7419a cut long line, autopep8
new 8347bd4 Replace deprecated function call
new fc99831 Merge pull request #349 from ahojnnes/bilateral-filter
new ea8e98f PKG: Fix bento build.
new cd8c3da ENH: Allow imread to read URLs
new e513018 Fix handling of temporary file.
new c135920 Merge pull request #358 from stefanv/userguide_dtype_range
new 9f7a376 ENH: Add test and support for reading file URLs
new c451aa0 STY: Fix confusing use of context-manager.
new c778de0 Translated clahe C code to python, added to list of contributors.
new 79fb543 Removed sys.path hack in test, fixed spelling of import in __init__.py
new 6c5b403 ENH: Add motion blurred clock image.
new 1485f26 Merge pull request #370 from stefanv/clock
new 5f70bbd Add gabor filter function
new d240e91 Fix meshgrid bug in gabor kernel and argument passing
new aeaf2e1 Add test cases for gabor filter
new f5795f1 Add example script for gabor filter
new a9e05e5 remove inlines in pxd
new 42d46ad move setup from /filter/rank to /filter
new 5ae4b42 remove comments
new e488e4b remove obsolete comments
new 07f87d4 adjust setup
new 8b0613f removed mains
new e30fa82 Remove unnecessary kernel description for filtering
new 8f70af7 Merge branch 'master' of https://github.com/scikit-image/scikit-image
new 9a7d9cd fix. gitignore
new 9788400 add test/
new a309a35 mv test to tests
new 9eadcdf rename using scikits naming conventions
new 2d6014e try to fix rank setup
new 969a8f6 rename some test to demo
new 5e09602 add demo all
new 1f5c2b9 add demo all (cont.)
new 27d028e add demo all (cont.)
new 243c8bf add readme
new d4e01c2 add py wrappers
new 0c8b415 fix bitdepth in rank.py
new 87db4ee update setup to be compatible with scikits-image
new 3f47670 add percentile mean
new 54e22e0 add other rank filters
new 10155e2 add percentile filters - in progress
new 304cac7 add percentile filters
new 8222a58 add bilateral filters pop and meanµ
new c633fb8 add full test
new 866ea40 adapt tests
new b83ae70 add examples - to be cont.
new 60e5dc7 add readme
new a7ff151 add ref
new d135170 add comment to bilateral denoising example
new dc838a6 compare local and global equalise in example
new 9f33242 rename egalise to equalize
new ad0c59f clean-up code
new 8644961 compare ctmf.median_filter with rank.median
new a07d0f6 add comment
new 11566ce fix percentile autolevel
new 936b7d5 fix percentile autolevel
new 633f30e adapt autolevel example
new 175658e fix 16bit percentile
new 7ef083e clean-up code
new c4dc33a fix equalize
new 7aae3ac fix other equalize
new c26d57d add marked watershed example
new 0a73260 add marked watershed example (cont.)
new ebfe4b8 add marked watershed example (cont.)
new cc5e23e add local test
new 9035117 remove unused _core
new 42feb70 add exhaustive comparison between 8bit and 16bit filters
new b208060 fix 8bit-16bit discepencies
new 0992ff6 fix doctest in rank
new 9d9a749 remove ascontiguousarray(eimage)
new 3ccec22 remoce sr,sc from cores
new 23c8768 remoce selem_num
new 1c4e17a add comment
new 3d973a1 rename n_se_n to num_se_n etc, removed commented code
new 85b5522 fix pxd-pyx confusion
new 388bb7f restore setupfile
new 43cd63b remplace int by Py_ssize_t and fix some doctests
new c3a3f39 remplace int by Py_ssize_t and for rank8
new b78a046 remplace int by Py_ssize_t and for rank16
new 8b3b42b remplace emask with is_in_mask function
new b9c52e0 add comment
new 7df19d2 remplace emask with is_in_mask function in crank16
new ef768b2 group core8,8p and 8b
new 7862b97 delete core8p
new e29ce3d group crank16 and crank16p
new 096fa01 delete core16p
new a13d1bb grou rank16 and rank16b, remove core16b
new 0e7271b find error in autolevel and percentile autolevel (16bit)
new f35cd7a fix error in autolevel and percentile autolevel (16bit)
new 8f70a1d add histogram_increment and decrement to core8
new b6b202a add histogram_increment and decrement to core16
new e7e60a6 keep true test in /test, move temporary tests in local
new f730a64 clean up
new c42fabc compare ndimage.percentile in demo
new 1e72afd add _apply(func8,func16,...) helper function
new 5b169f2 autopep8 sources
new 32b9cba moved example to doc
new 6814f59 removed useless tools.py
new 9546c34 modify CONTRIBUTORS.txt
new f2f8b68 __docformat__ removed
new 117b6d1 move rank/ into filter/
new 2c1bed0 cut long lines
new c5fb9b4 autopep8
new 2844db6 add example modal
new b8d9227 cut long line, autopep8
new 27793dd remove inlines in pxd
new cdfa2a6 move setup from /filter/rank to /filter
new 4ec4174 remove comments
new b652708 remove obsolete comments
new 1d1696f adjust setup
new 528718b removed mains
new 262e7f7 small comparison with denoise_bilateral
new 07f7c2d resolve conflict
new 1460d7f compare bilateral
new 1221a98 Fix ordering of return values
new 5be7f62 Fix hough transform return value ordering in doc string
new 531060e Reduce to one threshold paramater
new bc08be7 rename rank.py to rank.pyx + adjust setup
new 10a6c23 doc bilateral_rank
new 29f1878 doc
new d0415e6 Update README to Markdown.
new 890c473 start filter bigger example
new acc1e1f example continued
new e6199c7 doc cont.
new 8839c1d doc add perf.comp.
new 14d86cc document rank filters
new 271ea14 remove trivial examples from perentile_rank
new df02bf8 remove duplicate examples
new 298d2f9 remove other duplicate examples
new f61ffca test noise filter
new a8a5e33 fix noise_filter
new e804f96 fix noise_filter
new 665e05f doc entropy
new 8cf762f doc noise filter
new 12209a5 modify example entropy
new 692cfe7 Use center of mass for peaks with equal accumulator values
new 44ada6c add local Otsu threshold
new 6df06b4 Fix threshold default value description
new 0737cc4 Merge branch 'rank_filters' of https://github.com/odebeir/scikits-image into rank-filters
new 4a14a21 Improve overall code style
new 28e7b19 Improve code layout of kernel functions
new 045eb88 Change type of pop variable from float to Py_ssize_t
new 804b426 Clean Readme
new 2bb139f Wrap lines
new 7ea3a75 Remove duplicate contiguous conversion
new c00fedd Fix, improve and extend histogram test cases
new 8c55640 Do not ignore exceptions in core functions
new c9f95db Fix, improve and extend test cases
new f5ad204 Use single file for test cases and rename file
new 8fea5d1 Change data type of pop variable to float
new c3fc8c6 Merge pull request #1 from ahojnnes/rank-filters
new 08b748c local Otsu returns now the threshold values
new 47b0a72 fix: plt.show() removed in doc
new a09ec78 remove local demo from git
new fd82ac9 add new tests
new c9f1b67 fix: check pop==0 for some kernels
new add437a add: test entropy 8- & 16-bit
new db2e066 add: test otsu
new da39108 add: local Otsu synthetic example
new 542ec6f fix: local otsu doc
new f724b97 Fix typos and spelling of readme
new fce2ae3 Fix spelling of X-bit
new a376a07 PEP8 fixes in doc string examples
new eaf48a7 Use numpy reference style
new d0d5df0 Improve description of long rank filter example
new 4a0b22a Use common spelling for greylevel
new af55d71 PEP8 fixes for long rank filter example
new 114f3a8 Merge pull request #2 from ahojnnes/rank-filters
new f133158 autopep8 for plot_* and rank sources
new 411d468 fix:wrap lines in tests
new 698d6ae fix:< Py_ssize_t > 0 and & pop
new 70f2b67 fix: ref and test_otsu doc
new 2403bee Merge pull request #348 from odebeir/rank_filters
new 80a9a5a Apply numpy reference style to rank filter descriptions
new 22a73fc BUG: Adapt to whitespace in text search
new 2a8466a ENH: Compare full paths of cython extensions.
new d6a0b08 ENH: Add filter.rank extensions to bento.info
new 4f6f25e ENH: Add canvastools subpckages with base class and line tools
new 2ff3e78 BUG: Move callback connection to parent class
new 5be5813 STY: Reuse ThickLineTool in LineProfile
new 2df0cdb Merge pull request #374 from tonysyu/add-rank-to-bentoinfo
new d219a76 BUG: Fix blitting behavior in canvastools
new 0d411e2 STY: Refactor parts of LineTool to CanvasToolBase
new 9d653fe BUG: Clean up imports
new 13c61b9 Merge pull request #361 from ahojnnes/hough-peaks
new a7527ad Add example for hough_peaks function
new 63b5c5a FEAT - combined API from is_local_maximum() into peak_local_max()
new 226eaaf FEAT - Unified peak finder backend
new 33c9514 BUG - Fixed a bug where, when `indices` = False, output was not Boolean.
new 233b368 BUG - Fixed a bug where the image was not properly masked for each unique label.
new da5a2a8 BUG - Now parsing all unique labels != 0 properly, and set threshold_rel=0 in is_local_maximum() wrapper.
new e7288f9 BUG - Dtype conversion to Boolean in a new code path not included in current tests.
new 6ebc43b ENH Add imread io plugin
new 10ce9b8 RFCT Use `skimage.utils.convert` for type conversion
new 1f84c5e DOC Add myself to CONTRIBUTORS.txt
new 38f6994 TST Remove unneeded test
new a77923f Merge pull request #373 from luispedro/imread_io_plugin
new d226222 BUG - `rank_order` now imported.
new 45a91aa doc: deprecated string and docstring formatting fixes in `is_local_maximum`
new 98ce475 style: initialize `out` at beginning of function
new dc37797 Add functions to join and relabel segmentations
new b906082 Add testing functions for join and relabel
new 5108d8c Fixed RGB<->XYZ conversion.
new c5e047f Add join_segmentations example to the gallery
new 43eb33d flake8 on colorconv.py and removed unneeded .copy()
new b5d1e9f FIX quickshift nosetest with different xyz color conversion
new 22f94d8 Fix resize argument handling in rotate.
new afd1eed Merge pull request #1 from amueller/xyz_fix
new 9c38abb Merge tag 'v0.7.2' into debian
new 49e22d2 New changelog + refreshed control (version dependency on scipy + multilined depends)
new 2df4a65 fixed up watch for rename of the project
new 2e1729a Cleaned up adapthist func to use LAB for all RGB->required rest result change
new bf28a38 ENH: Make black the default boundary color for mark_boundaries.
new 6953785 added rgb2lab test
new 989d1de Merge pull request #380 from tonysyu/mark-boundaries-regression
new 49e06c9 Add title to hough peak detection example plot
new 298abe1 Add test for resize option in rotate
new 099b94e Merge pull request #375 from ahojnnes/hough-peak-example
new 68c2ab2 BUG: WindowsError not defined under Linux.
new 55b4a1e Merge pull request #383 from stefanv/windowserror
new 50c0399 Merge pull request #379 from cpsaltis/fix_rotate
new 4f68f1c doc: fix and clarify `peak_local_max` docstring
new c6d0acf Initial commit of adapthist modifications.
new 9eeb990 Tests pass and example works on build.
new ea85075 Added Notes to the docstring.
new 715271b Pep8 fixes.
new 20f4cee Replaced generic ACM license with the Graphics Gems IV license.
new c7c4db6 Improved support for color images using lab transform.
new 2699293 Passed all tests with full coverage, PEP8 and Pylint performed.
new 94af01c Translated clahe C code to python, added to list of contributors.
new 7f86b0c Removed sys.path hack in test, fixed spelling of import in __init__.py
new b8844be Cleaned up adapthist func to use LAB for all RGB->required rest result change
new 2eb03c0 Add dense DAISY feature description.
new 08ef1e9 Rebased to master, incorporated view_as_blocks, cleaned up interpolate method and example
new 9ff0eef Merge branch 'adapthist' of github.com:blink1073/scikits-image into adapthist
new e91129d Renamed functions to equalize_hist/adapthist, with a deprecation warning for equalize
new 71f505f Used the new function names in example and test.
new 979a15c PEP8 style corrections.
new 5cba69a test: add additional tests for 100% coverage of new `peak_local_max`
new 95f7177 Merge pull request #376 from JDWarner/unify_peak_finder_backend
new e5fb8a2 Better Sphinx documentation.
new fbf51a9 Fix dependency check in setup
new 8c4ba00 Move harris file to a combined interest point file
new 32a8442 Refactor harris corner detection, so it returns harris response image
new 4991acf Add Moravec interest point detection
new 1d96b29 Rename harris test case file
new 2edb33f Make moravec standalone cython function and fix doc string
new ecd2687 Fix return types in doc string of interest point detectors
new f692055 Add reference to moravec operator
new 3529afe Rename window size parameter of moravec operator
new 2ae23b4 Fix missing sigma for gaussian filter in harris operator
new c4ca726 Fix harris corner bug and add alternative corner measure param
new 4339386 Add comment to explain meaning of structure matrix of harris
new 4a75c64 Add Shi-Tomasi corner detector and fix bug in auto-correlation matrix
new 82089f7 Update test cases for shi-tomasi and moravec operator
new 6593e27 Fix contiguous bug in moravec operator
new 3508aa9 Add example to doc string of shi-tomasi
new 410280f Add some more references to interest point functions
new d55ef7e Add missing doc string return section
new 3b9ffe1 Improve code layout
new 16f09d3 Rename corner operators and file
new e26dc02 Add Kitchen and Rosenfeld corner detector
new 4366462 Use sobel for image derivatives
new 2d3cc8e Add more detailed description of corner detectors in doc strings
new 0f639e4 Add foerstner corner detector
new 6e19317 Fix short description of moravec corner detector
new bf3d34c Let foerstner return both corner measures
new cea889c Add subpixel corner detection
new 2273b73 Add references for subpixel corner detection
new 8af43f2 Add test case for subpixel corner detection
new c1f9336 Update examples of corner detection in doc string
new f95e936 Refactor corner detection example
new 5b72c5d Fix doc string for multiple return values
new 32cbf8e Fix typo in doc string
new b22d570 Add comments and rename variables for better readability
new 04fbee1 Remove unused array
new 81c01ea Fix confused parameters in doc string of peak_local_max
new 60c8e95 Add function to detect corner peaks as a wrapper to peak_local_max
new a7411bc Extend example of corner_peaks to highlight difference to peak_local_max
new 377ae3b Add test case for corner_peaks function
new bd9dab0 Merge pull request #386 from ahojnnes/dependecy-check
new a6042bb Merge pull request #387 from ahojnnes/peak-det
new a410f1c UmfPack warning is now only raised if random walker is explicitly called
new 33c58ad Fix some doc string formatting issues of random walker
new ef2bb54 Fix figure canvas creation.
new 588fe29 BUG: Allow slider to accept key press events
new 211bba0 ENH: Default to blitting
new 0428f82 BUG: Fix background update when canvas resized
new ac09463 Fixed comment header in test file.
new 15b1ad4 STY: Remove commented out code
new bb4f2b9 Modified test to pass with matplotlib plugin.
new 5444867 Removed explicit io_plugin from test
new 56ddd12 Merge pull request #388 from ahojnnes/umfpack-warning
new 0e34c91 Changed all test to use 3 significant digits.
new 9adae8b Fixed last remaining sig figure problem.
new 530fbbb DOC: Minor clean-ups of equalization demo.
new 7ebbdfd Minor code cleanup.
new e3951a2 Rename ar_relabeled to relabeled for simplicity
new 82c3526 Tweak join_segmentations example for clarity
new b5f9cf2 Merge pull request #1 from stefanv/adapthist_doc
new 73f5e9d Fixed error in peak_snr, now uses float arithmetic throughout.
new a6d4b6e BUG: Fix file separators for windows
new 866e7d7 BUG: Fix blitting behavior
new 16a7207 STY: Clean up unused blitting-related code
new 9f70148 STY: Minor code clean up
new bacc12e ENH: Draw new line when click is far from handle
new ece0457 STY: Remove reset functionality in line tool
new 67aada9 ENH: Increase default selection threshold for ease of use
new d06c7bc STY: Rename line_tool module to linetool
new cb30c24 ENH: Add measure tool plugin
new 36bc6da STY: Refactors general parts of line tool to base tool
new 631e97d ENH: Add rectangle tool and crop plugin example
new 1aafdeb ENH: Overhaul callback system.
new 04434b0 BUG: Fix image viewer for RGB images
new abc1d20 BUG: Fix file URI in test (2nd attempt)
new 19e86ed BUG: Fix matplotlib import for compatibility
new 7dcb2df STY: Switch order of callback parameters
new 6fee0fb BUG: Fix line visibility
new 70461b4 STY: Rename parameters for clarity
new 43fecd0 BUG: Fix renamed parameter
new cfe9e7d Fix typo
new 8e4f24a ENH: Add color histogram plugin
new e98476e ENH: Handle redraw edge case.
new 3d631ea Remove x, y parameters from line tool to simplify API
new 3fab96f STY: Rename end_pts to end_points
new e5dfb8c STY: Remove linewidth parameter to simplify API
new 260984c DOC: Add parameters to docstring
new 25b9f5d BUG: Fix LineTool example after change to call signature
new 34de6d3 BUG: Fix line thickness change call back
new 2e7e92f STY: Simplify imports
new 78e1efe ENH: Add setter for extents property
new 1a199b4 ENH: Improve end_points setter
new 8294795 BUG: Update measure for change in line_tool API
new 2532c65 BUG: Fix error when matplotlib is not available
new 6704285 BUG: Fix MRO bug when matplotlib not installed
new 380e27e Lazily import nose for testing, makes skimge load in 1/3 time.
new cb1527b STY: Fixed indent on docstring.
new b620c0a STY: Added newline at the end of file
new 73d9ee9 Lazily import nose for testing, makes skimge load in 1/3 time.
new 3175e73 Merge branch 'fast-import' of github.com:blink1073/scikits-image into fast-import
new 244e68c BUG: fix end_points setter when given a tuple
new ea0821f BUG: Validate mouse interaction
new 9bf512d ENH: Allow Save buttons to save overlay
new 4911952 Fixed indent on nose.run, so it will run when verbose is False
new a8dcb32 STY: Replaced indent with original formatting, no need to change.
new c73c2bb Merge pull request #392 from blink1073/fast-import
new 2849cbf Add circle perimeter to draw module.
new 6c19cf0 Add DAISY visualization + example plot.
new 450eaee Hide functools and imp packages in global skimage namespace
new e0f4cd0 Fix double space in warning message
new 746d815 Fix recursion problem with nose test suite
new 517d123 Merge pull request #393 from ahojnnes/namespace-fix
new a641ce6 BUG: Move import inside deprecated function
new 7aa9435 Handle all non-float images.
new 7fb97a4 Merge pull request #394 from tonysyu/circular-import-fix
new 097f25d Move set_color() to draw module.
new 3b43cf0 No need to normalize angular smoothing.
new 70f1e6d BUG: Remove focus from buttons which caused unintential clicking.
new 1fd4042 BUG: Added required QtCore import
new 9c88dd8 ENH: Let CannyPlugin adapt to input image
new 23d2486 Merge pull request #2 from blink1073/canvastools
new 0e08acd ENH: Warn if using OverlayPlugin w/ matplotlib < 1.2
new 2ebac38 Rename `ar` to `label_field` for clarity
new 35e8ad2 Allow grayscale input images to SLIC segmentation
new c276ec0 Fixed submodule import.
new 08da07b Merge pull request #377 from jni/jni-segmentation-join
new 98a5b2e Merge pull request #368 from tonysyu/imread-url
new 7c0424f Merge pull request #378 from sergeyk/master
new 06a8e7a BUG: Fix save to stack so it saves filtered image
new 112eb41 more intuitive description for beginner contributor to get her hands on documentation
new 4c4ba8c Add default value for polynomial order
new 5fb518b Add test case for default value of polynomial order
new ee16b9f Merge pull request #399 from mkcor/doc_first-steps-contrib
new 257cf95 Fix typo bug in perimeter function
new 61ab5ed Fix convolution bug in perimeter function
new fb9099e Update perimeter test case which was correct for buggy previous version
new d67fab2 Merge pull request #402 from ahojnnes/perimeter-fix
new 18aef47 Merge pull request #395 from jni/jni-slic-bw
new b4c8efa Merge pull request #321 from ahojnnes/interest-points
new 8e74313 Merge pull request #242 from blink1073/adapthist
new 06b8527 Add note about default polynomial order to estimate_transform
new 4782de0 Merge pull request #398 from ahojnnes/polynomial-order-default
new 1c58990 BUG: Not all plugins would pass the adapthist test
new 6a0ab4e BUG: Fixed exposure test to cast data on load.
new d3edd35 ENH: Add open and save menu actions
new 35a5fb5 Merge pull request #403 from blink1073/test-failure
new 875270c very slight change to warp_coords docstring, but I think slightly more illustrative of the shape of the array
new 0824af0 looks like I didn't save on the previous commit; these should be squashed with the previous commit message
new 4f37418 ENH: Added support for python3 in travis build
new aef305a BUG: Python 3 Travis build caught this error
new a0a0595 BUG: Failed exposure tests on Python3, fixed
new 5e44e78 STY: Used float comparison in test_exposure
new 6a54c56 STY: Change minor formatting to test travis build
new ec3f375 Merge pull request #404 from keflavich/clearer_warp_example
new 4ff97da Fix PEP8 issues and doc string formatting
new 24b49fc Improve total-varation denoising algorithm
new cda03cf Fix test cases for TV denoising
new dd34097 Remove old implementation if TV filter
new ccd2f42 Update denoising example for new TV implementation
new fff3370 Replace manual array with builting Cython buffer indexing
new 780d886 Rename denoise_tv to denoise_tv_bregman
new f2840ba Rename denoising cython source file
new dfd8cb4 Fix typo in denoise_tv_bregman doc string
new ae5488a Rename test functions for bregman algorithm
new 236ef48 Add original (Chambolle) implementation of TV denoising
new b7254f2 Update denoising example
new aadc45c Fix bugs caused by renaming functions
new 5078da0 Add test cases for chambolle tv denoising implementation
new db54605 Add test case for multi-channel chambolle denoising
new d82ae4d Add note about multichannel parameter
new 8da3541 STY: Minor change to docstring to test travis build
new eff906b Merge pull request #405 from blink1073/feature-travis-py3k
new 6c1b969 BUG: Fix clean up of canvastools
new 16f159f ENH: Remove unnecessary clean up functions.
new df91671 ENH: Add PaintTool and LabelPlugin
new d77aa60 ENH: Add demo of LabelPlugin
new 9c4eb3a Use print function for python 3 compatibility
new 81d88b8 Include more information about reference papers
new 8b6b51e Add myself as contributor.
new 4173d16 Add dense DAISY feature description.
new 24d3921 PEP8 style corrections.
new 633443e Better Sphinx documentation.
new 2313361 Add circle perimeter to draw module.
new 6770161 Add DAISY visualization + example plot.
new 74e6c38 Handle all non-float images.
new b770578 Move set_color() to draw module.
new 8d8b8ef No need to normalize angular smoothing.
new 4206804 Fixed submodule import.
new 101bcc6 Add myself as contributor.
new 1c674f6 Merge branch 'master' of github.com:andersbll/scikit-image
new 713e5dc BUG: Adapthist error caused by divisor operator change in py3k
new 1af3d69 BUG: Fixed another division error
new c3b1984 Merge pull request #372 from ahojnnes/tv-filter
new 103bd96 ENH: Adjusted save_to_file to create a proper composite image
new f48f94f BUG: Adapthist interpolation grids could be improperly spaces
new eeaf04e STY: Minor change to trigger Travis build
new 883885e Merge pull request #3 from blink1073/canvastools
new f517eaa ENH: Cast arrays for numpy compatibility.
new 7d328ae Merge pull request #384 from andersbll/master
new fa02f46 Merge pull request #406 from blink1073/bug-adapthist-py3k
new 60b560f add andres method for circle_perimeter
new 1fb5ae1 fix variable
new 3b84744 fix docstring + PEP8
new 7eab419 add references
new b304a18 Merge pull request #410 from sciunto/circle
new accdf3b Fix typo in doc string
new 2a46cc5 Use char type for circle_perimeter method for speedup
new cc014a1 Use same cython directives for whole source file
new 55ac092 Fix PEP8 issues
new 075c431 new method: ellipse_perimeter
new c9fd084 Merge pull request #412 from ahojnnes/draw-cython-directives
new 70825a4 Use char type for circle_perimeter method for speedup
new b1e5106 Use same cython directives for whole source file
new 805e554 Fix PEP8 issues
new dd41c9a add myself to contributors
new cc06102 remove print statement
new 843d2d1 remove brackets
new 1400eb4 fix for master
new 5711cea fix docstring
new 62b359a add test point position circle-ellipse
new 4b27c87 Fix PEP8 issues
new 0f36316 Add empty lines between functions
new ebc020f Wrap line and group imports
new 315161c Merge branch 'master' of git://github.com/scikit-image/scikit-image
new 8578158 Make some stylistic code layout changes
new 697c173 BUG: Update bento build to match setup files.
new bf47091 PKG: MSVC build fixes by Christoph Gohlke.
new 6d2aad4 fix: set random seed in `test_noisy_square_image`
new 94c7cc0 Merge pull request #415 from tonysyu/update-bento-build
new d202cea Merge pull request #419 from JDWarner/fix_noisy_square_seed
new 5f012cb Set random seed value to ensure tests always pass
new fcc7edd Set random seed value for denoising tests
new ad23f20 ENH: Add SimpleITK IO plugin.
new f78d10c Swapped the direection that the histograms point in the hog visualisation
new c500f47 Merge pull request #420 from ahojnnes/random-seed
new 6420238 Merge pull request #422 from colincsl/hog_visualisation
new fe6d3d5 Do not install the doc package
new 59a8deb Merge pull request #423 from cgohlke/patch-1
new 11f3257 Fix wrong include paths for shared subpackage
new 8f1c3c1 Merge pull request #425 from ahojnnes/shared
new 230fefa ENH: Improve usability of watershed_demo.
new 59fc5d9 Merge branch 'master' of git://github.com/scikit-image/scikit-image
new bdb2df8 use SSE to add/subtract histograms
new 32c0b1c Rewrite histogram operations to remove GPL license on Perreault's code
new db76467 fix: Otsu(8bit) and bilateral functions docstrings
new c25ec7f Merge pull request #433 from odebeir/fix_rank_doc
new b5b99d8 fix UTF-8
new b41bfba remove typedef, use numpy type in its place
new 4af0524 add casts to suppress compiler warnings
new ba1d27b move _histogram.h to _shared/vectorized_ops.h, and copyright info to CONTRIBUTORS.txt
new 1580c46 pep8
new d2b98a9 remove _histogram.h from setup.py, it's been moved to _shared
new 9f14eda Merge pull request #432 from thouis/sse_ctmf
new 92f609a Change type to ssize_t for all index and size variables
new df68526 Change type to ssize_t for all index and size variables
new 6026ddd Change type to ssize_t for all index and size variables
new 96c5f89 Change type to ssize_t for all index and size variables
new 8eb2086 Rename Py_ssize_t to ssize_t for consistency within skimage
new 0b99eb6 Change type to ssize_t for all index and size variables
new c9f72e9 Change type to ssize_t for all index and size variables
new 9f55fa2 Change type to ssize_t for all index and size variables
new 2957cb8 Change type to ssize_t for all index and size variables
new 2c90aa7 Use np.intp rather than ssize_t for ndarrays
new 614023b Replace ssize_t with Py_ssize_t globally
new a68be84 Fix index type errors in draw module
new 983cb76 Remove print statement
new 7e578b5 Fix index type error in SLIC function
new cf09c58 Fix index type error in GLCM
new 3125e63 Improve performance and type usage for GLCM loop
new 52e3436 Fix integer type bugs in feature detection algorithms
new 572000f Improve code layout of probabilistic hough
new 2d9c211 Remove unused CAPI numpy import and extend cython directives
new aedd12f Remove unused imports
new 6cb47a6 Make list of zip in Python 3 explicitely
new b716d8b Wrap lines
new caf5061 Merge pull request #424 from ahojnnes/ssize_t
new 729b311 Merge pull request #421 from thewtex/SimpleITK_io
new a9ec085 Add note about proper use of Py_ssize_t
new 62d83ad Globally change np to cnp if cimported
new 21d480c Fix accidentially changed doc strings
new 84cf943 Fix alpha handling for image saving.
new 19e69e9 Docstring circle + ellipse
new 27b837b Use log(2) instead of log10(2)
new 2e230c7 Use log(2) instead of log10(2)
new 8532a0e Merge pull request #436 from sciunto/docstring
new 746d9f6 Merge pull request #435 from ahojnnes/cnp
new b0a0169 Merge pull request #434 from ahojnnes/ssize_t-note
new a17d818 PKG: MSVC build fixes by Christoph Gohlke.
new 00c023d Merge remote-tracking branch 'cgohlke/patch-2' into msvc_build_fix
new 590784d Merge pull request #417 from stefanv/msvc_build_fix
new a997195 hough transform for circles
new 12c1bf8 add unittest for hough circle
new ffeb645 update contrib
new 88eaaad add blank line
new 5161687 various minor fixes
new 99e2997 declare cython variables
new de6e63d use a single array
new 928468b variable in cdef
new ecb762c bugfix dim + unittest
new 5572d16 add example for cicular hough transform
new de2fa28 Docstring + J.S. modifications
new 86f777a hough transform for circles
new 0451a2e use draw instead of mpl patches
new 609ce32 remove import mpl patches
new bb22499 Add save buttons to viewer example.
new c2023e9 Remove duplicate return statement
new 72e1d20 Remove deprecated homography function
new ae68507 ENH: Adding color deconvolution method to convert to an Haematoxylin-Eosin-DAB colorspace
new f2d91d2 Remove deprecated import of hompgraphy
new 306c886 ENH: Added an Immunohistochemical image example
new dd08c8c Fix return value of deprecated `equalize` function.
new bf7db0f Merge pull request #439 from tonysyu/fix-equalize
new 374a967 Remove deprecated tests for homography
new ef53255 Merge pull request #438 from ahojnnes/warp-fix
new 997870c FIX: the rgb2hed function. Legal issues regarding the ihc image. ENH: added the hed2rgb function.
new 74b37db ENH: Added rgb2hed and hed2rgb to __all__ list
new b065580 FIX: Simplified deconvolution equations
new 3e6e690 ENH: Added a short test to validate rgb2hed and hed2rgb conversion
new 85b1795 FIX: Removed unused dependency
new b249c00 Merge pull request #431 from sciunto/houghcircle
new 2ff289f DOC: Use brighter color in circular Hough demo.
new 1c60342 Merge pull request #443 from stefanv/hough_brighter_color
new d6d177f Fixing MSVC build by adding appropriate typedefs for uint16_t
new db7a063 ENH: If example fails, print traceback and carry on.
new 17e7ba3 DOC: Fix Sphinx errors.
new 1724fb2 Change `dtype_limits` clipping behavior.
new 9e10ea7 Merge pull request #445 from tonysyu/doc-tweaks
new 6e0112f BUG: Recast label output to satisfy ndimage on 32-bit platforms.
new 3d78493 Merge pull request #447 from stefanv/ndimage_dtype_32
new 5686e11 Add funct to remove small connected compononents
new 24b1450 Add examples to docstring
new 5222fb5 Add tests for remove_small_connected_components
new afed313 Modify example to use remove_small_connected_components
new d6c5ba3 Improve docstring for remove_small_connected_components
new b07f7fd Rename function to remove_small_objects
new 6b9ecd8 Add raise and labeled image tests
new 332469c Fix missed rename in example
new dc83c64 Change data type of index variables
new 3869d1e Removing unnecessary typedefs for uint16_t in MSVC build
new 0b97d48 Merge pull request #444 from jmargeta/MSVC_uint16_fix
new 3249faf Add specific error messages and exceptions
new dae9b7a STY: Minor cleanup.
new 40e7aee FIX: Ran autopep8 on colorconv.py FIX: modified color.data.ihc function FIX: smaller ihc.jpg image
new e4629ed FIX: modified color.data.ihc docstring.
new 7f5b331 FIX: import rgb2hed and hed2rgb in the test_colorconv script.
new 0a6b72b FIX: Fixed test_hed_rgb_roundtrip.
new dec104e Improve performance and usage of data types of hough circle transformation
new 2e3f82e Remove unnecessary statement breaks
new 2237cc1 Change color of circles for better visibility
new eee2342 Merge pull request #446 from jni/morphology-functions
new 4925205 Improve performance of normalization
new 25f16f4 Merge pull request #452 from stefanv/jni-morphology-functions
new 9cb354e Merge pull request #450 from ahojnnes/hough-circle
new f3924da DOC: Fix typo in remove_small_objects docstring.
new 4a8016f Add release notes for version 0.8
new 96e5c1b Update version number for 0.8
new ade23a2 Update docversion for 0.8
new 5755ccb Fix release instruction for making docs
new 4854dc8 Increase version number to 0.9
new eec9beb Fix setup merge conflict
new 19e938a Fix `ValueError: Buffer dtype mismatch` on win-amd64
new dda83fd Fix `ValueError: Buffer dtype mismatch` on win-amd64
new 7ca08cf Fix `ValueError: Buffer dtype mismatch` on win-amd64
new 97fd434 Fix `ValueError: Buffer dtype mismatch` on win-amd64
new 211d646 Use np.intp type for indices
new eb9c1e1 Merge pull request #453 from cgohlke/patch-1
new a4654b4 Add mailing list adresses to release instructions
new 631a3bc Add release instruction to update dev docs
new 2335f60 Merge pull request #454 from ahojnnes/release-announcements
new e6ee2c0 BUG: not all histogram memory was aligned correctly
new d548003 Merge pull request #455 from thouis/ctmf_unaligned_segv
new 44350f5 Fix vectorized_ops for bento
new 387c72b Remove colon as multi-line comment symbol
new cbcb313 Update version to 0.8.1
new 45f53c9 Fix MSVC error C2036: 'void *' : unknown size
new 5955937 Merge pull request #456 from cgohlke/patch-2
new 0b254ae Merge recent bug fixes of development version into v0.8.x
new 7439fe9 FIX: Testing for ubyte and float images. Input dtypes are converted beforehand.
new 70e37f3 Refactor code that generates scikit-image logo.
new ad0927f STY: PEP8 for logo.
new dad1cdb Merge pull request #4 from stefanv/tonysyu_logo_refactor
new b83e4e9 Merge pull request #457 from tonysyu/logo_refactor
new d7d87c9 Merge pull request #390 from tonysyu/canvastools
new 7c371e1 FIX: img_as_ubyte function threw ValueError due to floating point errors in hed2rgb function.
new f66c8b5 ENH: Added example to the gallery for ihc staining separation
new 5b25e7e FIX: Replaced non-ascii double quotes in Ruifrok reference.
new b306f9b Revert remove_small_objects to raise TypeError
new dd597fc Merge pull request #460 from jni/raise-type
new 0fd2f35 FIX: Link to Ruifrok reference
new 483ebae Change deprecated decorator to display warning in doc string
new 0cb0fee Remove duplicate code for alternative function
new a0d9d3f Use double instead of single quotes for doc string
new 332c21f Make deprecation warning in doc string bold
new d01b14f Add API documentation to latex docs
new b827645 Increase list-depth for nested quotes etc.
new a1ad4ca Change latex doc settings
new 0324737 Fix some doc strings for latex docs
new 20f2734 FIX: rgb2hed and hed2rgb can work with both signed and unsigned image.
new f48097c FIX: fixed docstrings. ENH: Added new stain separation matrices.
new c43986d ENH: Adding tests for new stain separation functions.
new b3e557b FIX: using the new stain separation functions for the special case of hed.
new 6f71580 FIX: combine_stains docstring.
new 0866815 Merge pull request #462 from ahojnnes/deprecated-doc-string
new 74acdc9 FIX: changed unicode dash in docstrings.
new b1628e0 fix comment
new 1686353 Re-enable plots in doc strings and generate PDF images for them
new 97d7f88 Explicitly set latex font size and paper size
new 3f31b48 Use plot_directive from matplotlib.sphinxext if available
new d68515f Copy some useful latex settings from NumPy
new 169d945 Fix make.bat
new 1d9fb14 Avoid duplicate python module index
new 5e67572 Do not set paper size to allow manual setting through make
new b75776c ENH: Updated stain separation function docstrings and added matrices to __all__
new bad3915 Merge pull request #463 from ahojnnes/pdf-docs
new d0a15a7 FIX: Example in combine_stains docstring.
new f956f32 FIX: Added myself in CONTRIBUTORS.txt
new a41d74c Merge pull request #441 from spotter/color_deconv
new 44095ee FIX: number of peaks returned from feature.corner_peaks
new a3d73bd DOC: minor fix ellipse_perim.
new c5bdf00 Fix parameter list format error of rotate
new dabb2b6 Merge pull request #468 from ahojnnes/rotate-doc
new 874c564 Replace scipy.ndimage routine with skimage.ndimage.rotate
new 96f08e6 Use nearest neighbour interpolation to avoid different labels
new 7f755e8 Remove unused import
new c475581 Replace rotate function of local binary pattern example with builtin skimage function
new 045f64a Explicitly import local_binary_pattern function
new f80cd81 Replace ndimage.zoom function in radon transform example with builtin skimage function
new 7b0fd4a Merge pull request #470 from ahojnnes/regionprops-example
new 0fde67b TEST: added test for num_peaks kwarg in peak_local_max.
new 920e413 FIX: move corner detection outside loop in test_num_peaks.
new 042b75d FIX: changed xrange to range so Python 3 works.
new 9968dfd Merge pull request #467 from malcolmreynolds/fix-num-peaks-typo
new 18b3d1f Fix reference syntax for corner detectors
new a751c7c Merge pull request #473 from ahojnnes/feature-refs
new 30e8437 Merge branch 'master' of git://github.com/scikit-image/scikit-image
new 6b1c809 DOC: add docstring for deprecation
new cebc983 Fix mistake in example
new ee915cd Merge branch 'docstring' of github.com:sciunto/scikit-image
new 1ddf37b add note for distance/angle convention. Thanks to Emre Safak.
new 30af0a6 replace hough() by hough_line() in doc
new 4e0db80 remove docstring
new c64350a Merge pull request #475 from sciunto/docstring
new 4b43e9f workaround: convert `dtype(image)` to `image.astype(dtype)`
new baa67ea Merge pull request #477 from JDWarner/convert_dtype_to_astype
new 12d2cd6 be consistant with python implementation
new 22158fc improve unittests
new f18be31 Fix and improve example
new 33060e3 Fix docstring
new 29b91ca minor doc improv.
new caee53c doc, minor improv.
new a68434b big clean-up!
new 42e872f fix names
new 0e4d107 fix signature
new 96d0e67 cosmectics (flake8)
new 35d6973 fix deprecated variable
new 027e21a Merge pull request #480 from sciunto/hl_review
new a784e28 fix rank filters for float structuring element
new e9ce0f6 Create dummy WindowsError that is an actual Exception instead of None. The previous solution prevented installation on py3.3 and OSX 10.6.1.
new cbf1657 Add cube selem.
new 42c72ab Add ball selem. I verified in 2D that this usage of np.mgrid yields the exact same results as np.meshgrid (np.meshgrid is not available for 3D).
new fa6a301 Fix typo in docstring of disk().
new 23cf8b7 Make sure non-zero values are treated as True
new 8299f47 Add test case for different dtypes of structuring element
new c56050c Merge pull request #483 from almarklein/windowserror
new 77192b6 Adding octahedron selem (3D equivalent of diamond).
new 644ab32 Added test for ball and octahedton selems.
new 5e44a2b Merge pull request #1 from ahojnnes/thouis-master
new 11a2f1e Merge pull request #482 from thouis/master
new f77def3 Fix peak_local_max's output for ndarray when indices is set to False
new afde2b8 change doc for indices and remove the unnecessarily tolist() operation
new 9f20e42 Tony's comment on output format
new d9e6b50 Make `exclude_borders` option in peak_local_max nD
new 6e4ec78 Use range instead of xrange
new 4a4517c Merge pull request #1 from jni/peak-local-max-indices-nd
new da055e7 Add test for nD `exclude_border` option
new 21a5bd6 Merge pull request #486 from yangzetian/peak-local-max-indices-nd
new bab4e06 Update release instructions for new robots.txt file
new 95d1e62 Rename sigma parameters by adding an underscore as separator
new 7d407fc Fix kernel-size calculation for non-zero theta.
new 2bf178c Add `bandwidth` parameter to `gabor_kernel`
new 67536c9 DOC: Tweak docstrings for Gabor filter
new ba12acd Update gabor example.
new 5c45812 Merge pull request #2 from tonysyu/gabor
new 0f2628c Add better test of gabor filter
new 959e024 Merge pull request #3 from tonysyu/gabor
new 2838b97 Merge pull request #371 from ahojnnes/gabor
new 469b41b vectorized transform.integral.integrate
new 40e6ada Merge pull request #493 from ChrisBeaumont/vector_integral
new 4e87f3f Inline helper functions of label
new 9fc3f3d Add option to return number of labels
new ecdfd51 Add test case for number of labels
new 9ddb9e4 Rename development guidelines, so they are shown when opening a new PR
new cf26435 FIX use specific structuring element in Canny
new 934db53 Merge pull request #498 from JDWarner/fix_canny_strel
new f0cfc5d Merge pull request #497 from ahojnnes/guidelines
new edfce92 Merge pull request #484 from almarklein/3d-selem
new 1edbf3e fix to preserve input image shape upon executing `random_walker`
new f1ef7d5 PEP8 fixes; remove unneeded pyamg import; add `data` shape check
new 28c7d8a Use `force_copy` argument of `img_as_float`
new 0238e38 Make return type of skeletonize function boolean
new 3c038f8 Reformat code to comply with PEP8
new 9eabaf3 Remove unnecessary conversion step to numpy array
new 16da3bc Remove duplicate import statement
new baae1d9 Merge pull request #501 from ahojnnes/skeletonize
new 8e0eb4a fix: remove unnecessary forced copy
new e3c3a69 add assertion checks to ensure `data` shape is unchanged
new 73e73c4 Merge pull request #500 from JDWarner/fix_preserve_rw_input_shape
new 474621c Merge pull request #503 from ahojnnes/exposure
new 6dbb4d2 Merge pull request #494 from ahojnnes/release-instr
new 1780a8d add option full_output to hough_circ
new ab8b325 Fix 64-bit multipage tiff writing segfault
new 67a2d6d Merge pull request #507 from zachrahan/freeimage-multipage-64
new 65457a9 Merge pull request #496 from ahojnnes/label-performance
new 8b6f489 Add multipage TIFF unittest
new ccc4386 Merge pull request #508 from zachrahan/freeimage-multipage-64
new e6277b1 Merge pull request #488 from sciunto/minor_docfix
new 7d35943 Fix Emmanuelle Gouillart's name in the contributors list.
new 1fb8f3f Refresh contribution guidelines.
new 1c5bd33 Add upstream / username remotes. Illustrate rebase.
new 80114c0 Used instead of deprecated function.
new ecba2df median filter outlier
new 3f47aef histogram example
new 8efaaee Find contours example
new 8e0bf8a Fix imread from urls on some backends.
new 1a9195b Merge pull request #512 from mkcor/doc_fix-deprecationwarning
new 44f1217 Merge pull request #509 from stefanv/contributor_guidelines
new 43c8858 Updated Implementation of Roberts Algorithm
new e6dedc6 Upadated Version with test added(/filter/tests/test_edge.py
new 83f51ef ENH: Add `chelsea` to dataset.
new af2a043 Merge pull request #524 from stefanv/chelsea
new 27026ce updated tests for Roberts Edge Detector
new 81479ca BUG: Fix integer type in Felzenwalb cython.
new e1b4424 Merge pull request #515 from tonysyu/fix/imread-url-bug
new 2a4a12b Merge pull request #525 from stefanv/felzenwalb_32
new 0586046 fix travis complaint
new 67bbf2a readability
new f417a45 Updated function names[Robert's Edge Detection]
new 3381107 Merge pull request #526 from sciunto/fixtravis
new 0b3a7ef temporarily use Cython 0.18 to restore normal Travis builds
new 9c6cd7d Final Roberts Edge Detector
new 54d7fca Merge pull request #527 from JDWarner/tempfix_use_old_cython
new e5dab80 Clean, and implemented using horse.jpeg
new 18839cd Updated Test Case
new 45aeeac Added horse.png to skimage/data and added a horse() in the _init_.py in data subpackage
new 616f24a End newline added and removed the .jpeg version
new 14992c8 DOC: "gabors from lena" isn't under construction
new 7dfbac3 URL formatting
new 1576b37 Merge pull request #530 from npinto/patch-2
new 5123692 Blank lines in reconstruction docstring for nicer display
new 2992ca7 Deprecating is_rgb()
new 494c1a1 Minor changes
new 0eea2a4 Fix Cython 0.19 build error due to global wraparound=False
new 35d2dba Merge pull request #535 from JDWarner/fix_mcp
new 17b38c6 Trailing _
new b6afbf1 URL
new 903d27d URL
new 5c3c75c Minor cleanups
new 42e4758 Merge branch 'pr/517'
new f2ace75 Fixes to make doctests pass.
new 004c8ce Merge branch 'pr/531'
new 8987ef9 .in to .com
new 425d33b Merge pull request #528 from chintak/doc_morphology
new f1529ae Reverting the changes
new 7602d8e Pre-build edge filter weights and use views
new c8fc92b Remove outdated author in doc string
new cd78e81 Fix output array dimensions in doc string
new 727ed92 Fix hough line examples
new d7eb2dc Add short description to edge filter example
new 82ea5cf Rename mean filter example and improve description
new 41007b4 Use numpy dtype rather than string
new d0ee6ad Fix inconsistencies in examples and many more improvements
new 503a509 Merge pull request #537 from ahojnnes/examples-fix
new efea865 Let Travis run all examples
new f51adcd Escape dollar-sign in makefile
new 05b15a6 Add matplotlib to Travis dependencies
new 1fd26cc Set matplotlib backend to Agg
new baf3132 Use current matplotlib version Python 3
new 2ca4407 Escape greather-than symbol
new c8942b1 Escape double-colon symbol
new 99d56b9 Change python version test
new 249fdca Fix wrong escaping
new cc95173 Add missing python version to pip
new e4e47e2 Remove escaping
new 401803b Change invalid install order
new 7b77861 Move example runner loop to Travis config
new c390070 Unescape dollar sign
new eec4aff Add better description for example runner
new 5f4dd4e Fix print statement for Python 3
new 9487ba7 Add missing future import
new fd47163 Add missing trailing space to print statement
new 7232f91 Install matplotlib after freeimage
new 3a2b0cb Use png rather than jpg for chelsea image
new c69eadd Use png rather than jpg for ihc image
new 9b06933 Fix image filename extension from .jpg to .png
new 529d46a Convert to ubyte dtype explicitly for python 3
new 5f06652 Fix dtype bug in color tests for python 3
new b909aa6 Convert to ubyte dtype explicitly
new 980aff5 Deprecate bresenham function
new 2b505a3 Replace all occurences of bresenham with line
new d3b70a8 Pass error return code of example scripts and exit
new 2585c5a Mentioned the Neurodebian repo in the install doc
new 182a194 DOC: Comment on the behavior of ``histogram`` for color images.
new f607a65 Merge pull request #539 from ahojnnes/bresenham-deprecate
new 17f202b Add __all__ to color package
new 36a915d Add __all__ to exposure package
new 4fce7b3 Explicitly import color functions
new 89f0c0c Add __all__ to data package
new 94e7fb9 Add __all__ to draw package
new 2ba3dd9 Add __all__ to feature package
new 702c177 Add __all__ to filter package
new 927d912 Add __all__ to rank filter package
new 3e278fa Add __all__ to graph package
new 9d4647d Add __all__ to measure package
new 6cae50c Add __all__ to morphology package
new 69eafa9 Add __all__ to segmentation package
new 4da0084 Add __all__ to transform package
new c10f8d3 Add __all__ to util package
new 8080e04 Fix selem test cases
new 7fa0416 Fix hough transform test cases
new c8bd937 Merge pull request #540 from ahojnnes/namespace
new 4cb251b Deprecating is_gray and replacing it with is_gray_2d
new e35d239 Add line estimation model
new 3f650f0 Add RANSAC algorithm
new 21d1e09 Add circle estimator model and fix some other bugs
new 4a93f38 Fix doc string of ransac function
new 47c3eba Add ellipse estimator model
new a384ca2 Rename variables for better readability
new 4dfe927 Add todo comment
new e337c7e Add example to ransac function
new d45fb02 Add imports of fit to subpackage
new 65f26e7 Fix example of ransac
new df801a8 Reduce default number of max trials
new 2c329d6 Add analytical jacobian for ellipse model for 100x speedup
new c9353ce Reduce number of function calls for speedup
new 444d51c Calculate initial guess for closest point on ellipse for speedup
new dd714b9 Replace numpy with math for scalar functions and remove Dfun from ellipse residuals for speedup
new b2fa37d Fix typos
new 62b2545 Add input data shape test to avoid out of memory Jacobians
new b58f52e Fix bug in predict_x of line model
new c1bb30f Return combined xy-coordinate array with arbitrary dimensions in predict_xy
new 44ff37c Fix bug in ellipse model estimation due to changed predict_xy output
new 53b7e6e Add test cases for line model
new e880f15 Add test cases for circle model
new 80827d3 Add test case for ransac algorithm
new aa309fd Replace triple-single-quotes with triple-double-quotes for doc strings
new 5b78b2a Add is_degenerate to geometric transforms
new bf2a5a4 Add residuals method to geometric transforms
new 5da3418 Change ransac function to accept multiple input data arrays
new 087fe88 Fix is_degenerate function to accept src and dst arrays separately
new fb74a9d Add new stop criteria to ransac and improve doc string
new 2222472 Add example for ransac and geometric transforms
new 8256615 Add test case for ransac applied to geometric transform
new db496d0 Remove trailing brackets
new 28bda25 Add is_degenerate to description of ransac iteration
new a730761 Replace is_degenerate with is_model_valid and is_data_valid in ransac
new 8d92f5c Remove is_degenerate methods from estimation models
new c8fa3b4 Replace is_degenerate tests with is_data_valid and is_model_valid tests
new 660a689 Add reference for RANSAC
new d857c45 Add example matching script
new 15e079a Remove unused shear argument
new 43b4e9e Remove extra space
new ef7b82e Clarify SSD description
new d6c49ea Add comment to explain commented out code
new 5656feb Use double quotes for code in doc string
new 19fdad1 Add `image_label2rgb`
new 90c0ac5 Fix: Add setup.py which adds data file to the build
new 4bd3fe9 ENH: Add some checks on the inputs.
new 6360240 TST: Add tests for image_label2rgb
new 29a2972 DOC: Change more examples to use `image_label2rgb`
new fa01b93 API Change: `image_label2rgb` changed to `label2rgb`.
new 9e7fb07 Add missing double colons for equations
new 252c889 Add missing double quotes for equations and code
new 63577f2 Update doc string of ransac with new validation functions
new f18eef6 Add title of wikipedia reference
new 434eb48 Add test case for underdetermined LineModel estimation
new 231596b Add test cases for residuals
new cec8516 Readd Cellprofiler license notes to edges.py
new 785e602 Fix last remaining PEP8 errors
new 4d79059 Merge pull request #536 from ahojnnes/edge-weights
new 01124f5 Use boolean mask for inlier return value of RANSAC
new 54e3757 Wrap lines
new 13bfd60 Add simple RANSAC example script
new 219d621 Set random seed to avoid random test failures
new 2eae931 Merge pull request #440 from ahojnnes/fitting
new e23c4f3 fix:doctring rank/percentile
new 59b37af typo
new cdca3f9 remove long lines
new 809e285 fix:remove unused parameters in rank.percentile
new 210a250 Merge pull request #545 from odebeir/master
new 7dfea72 Removing is_gray() and is_rgb()
new dc3ecf5 Removing redundant imports used in previous commits
new 455fecd Fix spelling
new 340e2b0 Add python code checkers to travis build process
new f1e8f4c Replace pep8 and pyflakes with flake8
new fde2f2a Use mirrors for flake8 installation
new a5d42a3 Add skimage.viewer.qt wrapper.
new c7fa620 Add PySide compatibility for save dialogs
new 15c726e Add exit-zero directive to flake8 command
new 3baa7fe Fix file open dialog for PySide
new db4ef53 Merge pull request #550 from ahojnnes/matching-spelling
new d1a7a90 Deprecating is_rgb and is_gray
new 494a235 DOCFIX: "\" in `label` docstring now escaped
new 46637bf Merge pull request #563 from JDWarner/docfix_label
new 09aad04 Add short example for transforms to warp function
new a569e76 Fix parameter description of warp function
new b3c7d67 Fix parameter descriptions of warp functions
new 071d4bf Add examples to doc strings of resize, rotate and rescale functions
new 44ca1b9 Fix spelling error
new e6a7238 Fix incomplete options for mode of _warp_fast function
new 6c4ed67 Wrap lines
new f7959e3 Fix doc string injection of deprecated wrapper
new 769d7d1 Fix invalid index of reference
new 17b2c4f Escape latex math symbols
new b9cf214 Add filter.rank to __all__ of filter package
new 0d3e752 Fix indentation of ransac doc string example
new 71e7eb9 Fix styling of math and blockquote
new 3dc4824 Fix doc string of threshold_adaptive
new b0b7d11 Remove bold font from dt tags
new 35a73c2 Fix quick search description
new de39f58 Update installation instructions
new cdc19a3 Remove unnecessary bscript
new b872648 Add reconstruction circle option to transform.radon.
new aa8f1b7 Tests for reconstruction circle option for transform.radon.
new 5876d80 Add reconstruction circle option to transform.iradon.
new 2118f1d Tests for reconstruction circle mode in transform.iradon.
new e61bae8 Merge pull request #566 from ahojnnes/bscript
new db34c1a Merge pull request #565 from ahojnnes/doc-fix
new 191745f Merge pull request #564 from ahojnnes/warp-example
new a49502a Remove `alignment` kwarg for compatibility with older PyQt4
new 8208293 Correct documentation and string formatting.
new 8b0ddc2 Merge pull request #541 from emmanuelle/doc
new d183cce Remove `alignment` kwarg (left out from previous commit).
new 03119e3 Merge pull request #551 from tonysyu/pyside
new c9ae913 PEP8 style changes for transform.radon_transform and its tests
new bec5a20 Style improvements in docstrings in transform.radon_transform
new 559b0a0 Implement faster version of circle and ellipse drawing
new 4cf6edc Capitalize parameter description
new 748be5d Add example to line drawing function
new 3c8337a Add example to polygon drawing function
new 5bae204 Add example to circle_perimeter drawing function
new be7a920 Add example to ellipse_perimeter drawing function
new bc3a804 Add example to ellipse drawing function
new f31193c Add example to circle drawing function
new a12e557 Add example to set_color drawing function
new d5629b1 Update contributors
new ba354dd Merge pull request #568 from ahojnnes/circle
new 7ced662 Merge pull request #567 from josteinbf/radon-reconstruction-circle
new d644118 Merge pull request #532 from ankit-maverick/deprecate_is_rgb
new 443d0e9 absorb NMU patch from #681896
new e51f5c3 implement rotated ellipses
new 8b252bf add contribution
new ed9d1aa remove old line
new 328e54f minor fixes
new 1710b12 change bezier_curve definition for consistency
new 00524a3 split tests
new e2dbc48 docstring
new 2131a9d rename function bezier_curve to bezier_segment
new f630327 add unittest
new 192fb30 pep8
new 984311b fix int + pep
new 1e862e0 use bint
new b36a34c oops
new 124e387 Fix `RequiredAttrs` definition.
new e7ca4b6 Fix parameter name in docstring
new bd860b7 Add infrastructure for conneting plugin output to a viewer.
new 177a1fd Add example of connected viewers/plugins
new e66d73a Added convex_hull_object function
new d63ee46 Trailing whitespace
new 6fcaaee Added the note in docstring as suggested by Josh
new 48932b6 Update convex_hull.py
new db84262 Note and relative import
new 20ca89d Added unit test for convex_hull_object function in test_convex_hull.py
new 2419285 Unit tests added
new 4ff2890 Resolve fast forward
new 1814cc4 Remove trailing whitespace
new b6d15c9 Remove trailing whitespace
new 7836e2b Using labeled_im == i
new 9797ae0 Blank at the end of docstring
new 1430231 Add convex_hull_object in __init__.py
new e499949 Minor changes
new 1ef98da Ability to choose the type of connectivity and ValueError
new a2a40de Test for the two neighborhood values
new bec3b4e Note rewritten
new ab2a827 Endline
new 8bc70cd Added test for checking ValueError
new 054360f Note re-worded
new 390a6c6 Whitespaces and note
new afd2208 Space
new 7eeda7c Add convex_hull_object to __all__
new a6caac0 new line
new df6da9f Merge pull request #558 from chintak/convex_hull
new 2cfd075 Merge pull request #538 from ahojnnes/examples-travis
new 6326184 Merge pull request #510 from sciunto/ellipsev2
new cfb7d6c Set matplotlib backend globally
new 3a4f729 Create matplotlib config directory
new 6bccdbf Set matplotlib qt backend
new 255ac68 Avoid import of matplotlib QT lib if QT is not installed
new a48de8d add optional + default in pyx docstring
new 153bc6e Use None instead of 'none' for qt backend
new 817c963 Fix setting of QT_API environment variable
new 2832b7a Fix python 3 print statement in example script
new ecc8c46 Fix window size of sub-pixel corner detection
new 545a83d Fix matching example script
new 11ad6b8 Merge pull request #571 from ahojnnes/travis-fix
new c7a48b4 Merge pull request #572 from sciunto/docandco
new 143b3af Remove reference to Bento hookfile.
new 07630a9 Dock plugins to image viewer.
new e373e13 Fix sizing of PlotPlugin
new 16b6411 Display title in docked plugins
new 55386ec Add smart window-layout for multi-viewer display
new 3e3ead7 Add mock pyqtSignal to try to get Travis to build
new 86c2c1a Second attempt to get Travis to pass
new 9393eac Third attempt at getting Travis to build
new 87afe3e Accidental deletion
new 484e569 Add attributes to Mock object to fix Travis build
new 9b3c579 Modified 'denoise_bilateral':\n1) check that image max value is not zero to avoid segmentation fault.\n2) initialize color_lut after sigma_range has been checked.
new a80fd76 Deported variable initialization after the cdef block to allow verifications.
new 1860fc4 Reduce code duplication in test_radon_transform
new f533f53 PEP8 fixes for test_radon_transform
new 43bb55c Merge pull request #578 from josteinbf/radon-test-refactor
new 28189c9 Moved image conversion after the verification of the max_value
new 6eed771 Merge tag 'debian/0.6.1-1' into debian (reintroducing dropped by me debian release)
new 587c6dc Merge commit 'debian/0.6.1-1-1-gf768570' into debian
new 9ae99cc Merge tag 'v0.8.0' into releases
new b433b3b Merge tag 'v0.8.1' into releases
new 97ae828 Merge tag 'v0.8.2' into releases
new 76962bf Merge commit 'v0.8.2-69-g97ae828' into debian
new 0d93e3a Merge remote-tracking branch 'origin/debian' into debian
new 808788b Updated changelog entry for 0.8.2-1
new 6ecc287 debian/control - boosted required cython version to 0.15, policy to 3.9.4
new 2eec6c3 minor: boosted copyright year for upstream to this year
new ebb7875 added patch changeset_0eea2a48fe2dca7bbb3681fcd5b511579cad6347.diff to "cherry-pick" 0eea2a48fe2dca7bbb3681fcd5b511579cad6347 (Fix Cython 0.19 build error due to global wraparound=False)
new 0d3550f up_correct_version -- fix upstream version to be 0.8.2 (thanks Julian again)
new b6c15cb README became .md from .rst
new 5a041d2 Merge pull request #576 from alexis-mignon/master
new 2ca77c4 Fix PySide compatibility for signal defs
new 391b2ed Added a function for Gamma Correction
new c1e8440 Prevented info loss, implemented Log and Sigmoid Correction
new 4d1c334 Separating the functions
new 8f8c583 Separating correction methods into different functions
new c9330ea Correcting code quality issues
new e1c23ac Added better tests and removed weak ones
new a88ae64 Added stronger tests
new a475d3c Corrections and Improvements
new 23f6179 Minor improvements in docs, tests
new 00ae241 Error handling for images with negative values in Image Correction methods
new 9a1c39f Adding a utility function to test non-negativity of an image
new f94f3db Renaming rescale_intensity_* as adjust_*
new 8ecadf1 Replacing every occurence of substract* with subtract*
new f20286b Merge pull request #581 from ankit-maverick/subtract
new cc2f185 Fix plugin interaction with CollectionViewer
new a6293fd Add example of connecting plugins to CollectionViewer
new afd1b1b Fix display of overlay plugin when original image is updated
new 0a8ff1b Fix docstring for CollectionViewer slider.
new 04625eb Final stylistic changes in exposure.py
new fcec46e Radon transform example: Correct axis labels
new 61d7a0b Merge pull request #570 from stefanv/bento_hookfile
new 89e6215 Radon transform example: Remove semicolons.
new ce3a583 add autopkgtests
new 7e13028 update packaging to use dh_sphinxdoc and dh_python2
new 8b4dd45 fix navbar links in documentation
new 2633e25 wrap-and-sort debian/
new 8c2c69a Merge pull request #583 from josteinbf/radon-example-axes-fix
new cbc5fec add python3 packages
new 68f66c1 adjusted changelog + releasing into unstable
new f07467b Merge pull request #505 from ankit-maverick/gammaCorrect
new 884ac31 Correcting typo in the reference section of adjust_sigmoid
new 2c0e20f Correcting typo in the reference section of adjust_sigmoid.
new 3e544d7 Adding author and name of the paper in reference section of adjust_sigmoid
new eb9de1d MIN: use print() instead of print
new e258e05 MIN: fix unused import
new 37a76c8 Merge pull request #585 from ankit-maverick/typos
new 93f92e6 fix blank print for python2
new 2ed9fc9 Merge pull request #586 from sciunto/print
new cf4b83b cast range to list for python3
new 00f387e minor contrib.
new 755ba9e MIN: remove unnecessary brackets
new 026ca77 Merge pull request #588 from sciunto/range
new 2ac42c4 Merge pull request #587 from sciunto/import
new 9042fcd import configparser for python3
new 79a5ab0 Merge pull request #589 from sciunto/configparser
new 71601a2 fix path import viewers
new 5908542 fix import urllib2 for python3
new 7cf2073 workaround for itervalues
new cc249ba fix iteritems for python3 compat
new d67f700 First quick implementation of BRIEF Feature descriptor
new fa72a20 Refactor contribution workflow
new b5fbca3 Change branch name for consistency across guidelines
new 1eb841d Fix typo
new 8e4c11c Add additional advice about rebasing
new 752e860 Use long parameter version --force rather than -f
new a1df85d Allowing arbitrary descriptor sizes in BRIEF
new 566006b Removing hard-coding in BRIEF code
new 20ae0a1 FEAT: Generalized n-dimensional array padding This PR exposes NumPy 1.8+ padding functionality to all users of scikit-image, regardless of their personal NumPy version.
new 20401d3 Change color definitions from ini file to python module
new 5efe571 Tweak Sphinx rendering of contribution page
new d784352 Merge pull request #4 from tonysyu/rebase-workflow-edits
new 3926f18 use items/values for python2/3 compat
new 28c8a9b Merge pull request #593 from ahojnnes/rebase-workflow
new 43074f6 Merge pull request #590 from sciunto/python3fix
new 73f6585 Hough transform for ellipses
new d23469d use memoryview
new 33bbda1 s/int/long memory view
new 5ce5f28 delete duplicated import
new 0a4fcda fix imports
new b9572e8 remove commented lines
new 6f6d207 fix import
new 5c3eef0 delete comment
new 84bff08 fix import testing
new a9f9626 add spaces for travis (pep8)
new 77d7b25 fix import testing
new a165cf3 pep8
new 8aad4d6 fix missing space
new d8d5e30 Merge pull request #598 from sciunto/fix_import
new 360f5b5 Merge pull request #597 from sciunto/hough_ellipse
new 0a727e3 Merge pull request #485 from tonysyu/image_label2rgb
new 113267b Merge pull request #577 from JDWarner/add_pad
new 4e0cbf9 transform.radon: Add test to verify the projection center.
new b8a20bc transform.radon: Add testcases for rectangular input arrays.
new 1d64eb5 transform.iradon: Add tests for center of projection.
new 28de2f9 transform.radon: Remove unneccesary matrix inverse.
new 380c916 transform.radon: Use correct padding for rectangular images.
new a44f1d4 transform.radon: Consistent definition of center of array.
new 364e821 radon tests: Refactor test for circle reconstructions.
new 131cfc7 transform.iradon: Redefine slice and projection center.
new da42393 test_radon_transform: Add helper functions.
new b61ff75 transform.iradon: Refactoring for shorter functions.
new 1caafd4 test_radon_transform: Test sinogram conversions.
new cf51de6 test_radon_transform: Refactor and improve test_radon_iradon.
new e63a1fb test_radon_transform: debug option for test_iradon_minimal.
new b8a6b4f radon_transform: Stylistic changes.
new afaab4f test_radon_transform: Refactor tests and make them stricter.
new 934f104 test_radon_transform: Change test criterion for iradon_minimal.
new df0b060 test_radon_transform: Change test criterion for sinogram_circle.
new cca66a0 transform.radon: Robust determination of center of projection.
new 4b25c48 transform.iradon: Correct determination of center of projection.
new 186a238 test_radon_transform: Clean up imports.
new 6d2f082 test_radon_transform: Style fixes, PEP8.
new c9b2bd0 Fix division by zero bug in corner detectors
new 4c39d26 Merge pull request #601 from ahojnnes/corner-eps
new c4299c4 Fix execution in IPython with qt backend.
new e305677 Fix PyQt4 segfault caused by PySide fix.
new dae0156 Make histogram threshold adjustable
new cae693c Change QApp default to previous behavior.
new ed7c75d Raise ImageViewer to front on start.
new c826935 Change default Slider update_on value to 'release'
new 45d960d User-specified output ratio
new 82c987c FIX: prepend `np.testing.` to assert_* statements
new 6d5c8cb Merge pull request #604 from JDWarner/fix_sitk_tests
new 8367542 Corrected indentation and spacing.
new 03623a3 Corrected indents (4space instead tab).
new 9e415a0 Corrected indents Again.
new 173fec0 Merge pull request #575 from tonysyu/feature/viewer-linking
new bba2b1b Documented another easy way to build scikit-image for virtualenv users.
new 0586817 Modified test_rank.test_compare_autolevels and test_rank.test_compare_8bit_vs_16bit to correct for assumption that data.camera() would always be loaded as ubyte (or ints at least) when using matplotlib as backend (which caused data.camera() to load as float32).
new 9583072 Added usage example.
new 2e80b81 Merge pull request #612 from applio/master
new 362d915 support for saving to file-like object in imsave
new edee150 Edited after Stefan's comments.
new c76daa9 Add explanation to LBP example
new 397e7c1 Clean up test.
new a95824c Merge pull request #1 from tonysyu/pr/613
new c61e043 Merge pull request #613 from adamw523/master
new c18373f Use memoryviews in skimage.transform
new 0baffad Okay, I think I got the rst syntax this time...
new e931739 Adding custom sampling seed, Normal sampling mode
new 2ef6f0a Remove 2to3.
new 70d21f2 Add six compatibility module.
new 9a38a59 Remove is_str and replace by isinstance(..., six.string_types).
new a1adfa8 Correctly check for string type.
new b04c328 Fix zip.
new 8461547 Fix function code.
new 504ad94 Fix iterator.
new eb66e34 Fix label casting for numpy 1.7.
new 227b209 fix arraypad
new 81519b7 adding main to run tests
new 9d1907a Fix im_class access in Python 3.
new 558298f Fix im_self access in Python 3.
new f0506f1 Fix imports under Python 3.
new 0286d2d Use int32 for labelling.
new 39e66c0 Add to public API.
new 2566171 Space code more readably in transform.
new 6cef872 Minor fixes
new f429b5a Ensure PIL tests run with PIL.
new 9ed2613 Do not run flakes on test files -- we have too many custom formatted array.
new f8f3cee Merge pull request #620 from scikit-image/2013
new 58a4a43 Change rank.pyx to _rank.py
new f92f057 Add support for all data types.
new d96411a Fix build script
new 9ece0b5 FEAT: Automatically switch between RGB / grayscale lineprofile
new 2b5930a DOC: Add viewer example for RGB line profile
new e20aa7c FIX: refactor code, fix linewidth calculation
new e790fcc FIX: lineprofile no longer flips on left half and cardinals work
new b5c159d Improving docstring + style/convention edits
new b4e71ec FIX: remove blit, fix 0-length error on grayscale images
new 19a3d33 FIX: only reset axes when gray <-> rgb, not every update
new 6f77540 FIX: No longer reset for each update
new fe4470e Merge pull request #615 from JDWarner/fix_lineprofile
new 9a45f82 Added some warnings for transparency.
new 4cf8e27 PEP8 compliance!
new 2b7b472 One line.
new 94dc84f Clarified that you can pass images of any type into Canny filter. If low and high thresholds are not specified by user, default to 10 and 20 % (respectively) of range of image's dtype.
new 8f40e05 Fixed relative threshold: you consider 10% and 20% of the max for range of corresponding dtype.
new ee7f710 Improved style.
new 5b3081c Always follow the style guide :)
new 75b3fcd Included Tony's edits.
new 63d13a0 Merge pull request #618 from mkcor/filter_canny_passingtype
new 5f7fc52 FEAT: generator to add various types of random noise to images
new bb6ea70 Merge pull request #621 from tonysyu/fix/rank-dtype-compatibility
new 95352a5 Added docs and used numpy trickery to filter keypoints
new a746834 Changed dtype of hamming dist matrix and added docs
new f3b827d Fixing indentation
new e836f07 Changed variable names so they actually make sense (followed Tony's suggestion).
new 6023b3a Merge pull request #617 from JDWarner/memview_transform
new 647aacb Merge pull request #625 from JDWarner/random_noise
new 42e07a8 Fix naming bug
new 19f264b Make color functions used by SLIC 3D-aware
new 0132998 Make more colorconv functions 3D aware
new a2e32cc Add initial 3D modifications (not working)
new bb8cfea Add function to calculate regularly-spaced grid in nD
new 6202100 Modify SLIC to allow uneven step sizes
new 3063642 Add more descriptive error message to _prepare_colorarray
new 6dc8e63 Separate inner loop of SLIC computation
new 8e4ab32 Bug fixes: concatenation order and shape assignments
new e9aa78b Bug fix: don't add singleton dimension to 3D gray images
new 57cc86d Bug fix: remove unnecessary __get__ in test_slic
new 215439b Add 3D slic tests (gray not working yet)
new 5c4d021 bug fix: 3d test working
new 332ab04 Improve PEP8 and Python 3 compliance
new 441f402 PEP8
new 99f905b Always convert image to float in [0, 1]
new e757b9a Rename slic.py to avoid name conflicts
new e9c5f66 Use educated guesses for presence of color channels in SLIC
new 1c116a9 Add function to guesstimate number of spatial dimensions
new f0d586a Revert change to is_rgb
new 5a43e03 Bug fix: add z dimension regardless of multichannel
new 55fe6ce Bug fix: spatial vs image dimension comparison reversed
new 69fb3fb Make means array contiguous for numpy <= 1.6.1
new 8c2011d Add UTF8 coding declaration to slic_superpixels.py
new cba821d Suppress warning of ambiguous array dim in test
new b1b7063 Initial attempt at updating SLIC for memoryviews
new 6e64515 Fix build errors with memoryviews
new 524255c Improve _slic.pyx doc, bug fixes, debug print
new a338618 Remove diagnostic print
new 578876e Bug fix: correctly initialize distance in slic
new cd19752 Speed up initialising 'distance' in SLIC
new 7f1b9ea Fix automerge bug
new dab831b Bug fix: map returns iterator in Py3k
new ac7880b Outsource inner brief loop into cython file
new df2233c Remove old commented-out code
new bcacd06 Outsource inner brief loop into cython file
new c032408 Merge branch 'ankit-brief' of https://github.com/ahojnnes/scikit-image into ahojnnes-ankit-brief
new 3dcd24e Clearing docs and making feature.util
new 56e7ea2 Removing unused import and fixing indentation issue
new 32f39ee ENH: Improve random_noise with better param names & docfixes
new b551a49 First implementation of Integer Up/Downsampling
new 19f0be9 PEP8 corrections
new 8372b0b Removing code repetition
new b580421 Minor refactoring
new bfc2aac Downsampling of nD arrays
new 329cf37 Padding ndarray with zeros to support downsampling by any integer factor
new 7282f56 Added docs, tests for downsample() in skimage.transform._warps
new 2f81754 Making code compatible with Python 3
new c57c865 Add _sum_blocks
new 6f9d7c5 Cleaning up downsampling for integer factors
new bcc2492 Merge pull request #596 from josteinbf/radon-projection-center
new 8ac4427 Expanding the documentation in transform._warps
new f79582e Attempt to solve circular import issue
new 70d1804 Another attempt at solving circular import issue
new 971e7be Correcting typos
new 24c0c40 Merge pull request #511 from ankit-maverick/resample
new 9484afe Add SART tomography reconstruction to radon_transform.
new d4b3305 Make iradon_sart visible in the transform package.
new 8e6468e Add tests for transform.iradon_sart.
new 1e1dd18 Implement projection shifts.
new d5f323e Tests for the projection_shifts functionality of iradon_sart.
new b474804 Fix docstrings for transform.iradon_sart with subroutines.
new 372f012 transform.iradon_sart: Clean up code for ordering projections.
new 4969021 iradon_sart: Add wikipedia reference to Kaczmarz method.
new 94eba1c iradon_sart: Clarify how constants are chosen.
new 1b620a0 Tests for iradon_sart: Robust path handling.
new 59bdb24 iradon_sart: Clean up cython code to minimize python calls.
new c977c59 iradon_sart: Improve argument checking.
new 91aeb65 iradon_sart's cython exts: Use typed memoryviews, not ndarrays.
new 5baaf78 iradon_sart: Reduce code duplication in interpolation.
new 89f227c iradon_sart: Remove needless memoryview/ndarray conversion.
new 8d4b1e6 iradon_sart: Add Kaczmarz reference and reformat citations.
new dcd31c1 radon_transform: Declare encoding.
new 2082b57 iradon_sart: Order angles using a golden ratio approach.
new ace07a0 iradon_sart: Add test for order_angles_golden_ratio.
new 116e1dd iradon_sart: Also test accuracy with a missing wedge.
new 266b202 iradon_sart: Style fixes.
new dde4288 test_radon_transform: Style fixes.
new a5df8d4 Rewrite Radon example; include SART.
new a487024 iradon_sart: Test clip functionality and add a test for it.
new 9e11e45 radon example: Display plots when run from command line.
new e5dfcb0 Improve the text in and add references to the Radon example.
new 1d61187 Radon example: Style fixes.
new 789c199 Radon example: print RMS errors of the reconstructions.
new e2a0f7f Radon example: Declare UTF-8 encoding.
new 06857d3 Radon tests: Check the correct error metric.
new f2790d6 iradon_sart: redefine projection center.
new af47941 iradon_sart: fix comment spelling.
new 3cdfecc iradon_sart: flip signs to reflect changes to radon.
new 5537671 Add SART to contributors.
new 794a4d7 arraypad: allow padding with zero entries (i.e. no padding).
new e5e0c73 Merge pull request #634 from josteinbf/arraypad-zeros
new 04b14b4 Refactor local block functions and add additional functionality.
new f9546d0 Fix import namespace
new 5579aa2 Fix doc string examples
new c0a019e Update test cases for block functions
new 9d806eb Update doc string for new functionality
new 4f6b39d Rename block_* functions to local_*
new b7f72ff Fix deprecated function name referneces in doc strings
new 06aaf93 Use pad function and add option to define cval
new 516d6ef Fix Python 3 incompatibility (also, some wording tweaks)
new 2dfeab8 PEP8 + import
new 73a39c8 activate travis for a fork
new 71c0c2c Added an example in skimage.feature._brief
new e74b971 erode & dilate -> private functions
new 50ac1e8 Fixing bug in _remove_border_keypoints
new f316abb DOC: add doctrings
new de9d266 MIN: fix pep8
new f932db6 Added more detailed example in docstrings
new cf3efba use previous import
new bf26ce7 Merge pull request #640 from sciunto/missingdoc
new 15ed7bd Merge pull request #584 from josteinbf/iradon-algebraic
new 6edd707 Merge pull request #637 from sciunto/minorfix
new 237fb98 radon: Use util.pad for array padding.
new ac460a9 iradon: Use util.pad for array padding.
new 5955e4e iradon: Reduce code duplication.
new 2be3278 radon: Use numpy.interp/scipy.interpolate.
new b90ba78 iradon: Only allow interpolation methods working well.
new 643a1bc iradon: Add test for cubic interpolation.
new b3746b9 iradon: Cleanup by locating related code in one place.
new bea50aa iradon: use util.pad for sinogram padding.
new f3b1b39 Merge pull request #635 from josteinbf/radon-cleanup
new 4f0c4f0 add coffee picture from flickr
new d7b8f37 add example HT for ellipse
new df60707 Adding match_keypoints_brief
new 7506357 add extra comments
new e0c1e03 fix title
new 4eed837 rename files
new c2193cb fix doctest
new 7fefbf9 PEP8
new 7048a9c add original picture
new acdfd8b simplify modification image + comment
new bcd2974 fix Johannes' comments
new 0e7e838 use shorter URL
new c47aa27 typo
new 02acd3c revert, accum is a tuple of lists
new 47a0cd1 Merge pull request #642 from sciunto/convex_hull_ex
new 0988650 Adding docs for match_keypoints_brief
new 1b4cf9f Fix Bento build.
new 48d78c0 Improve doc for regular_grid.py
new 18a06a0 iradon_sart: Format docs correctly.
new 5f62ad5 Merge pull request #614 from tonysyu/doc/local-binary-pattern
new 4e0440d detailed procedure
new dd9f6a1 Merge pull request #643 from stefanv/bento_fixes
new 0156593 Let travis-ci check bento.info
new 633dca7 Refined syntax.
new 1cc42bd iradon_sart: Reformat references.
new 4d307f5 iradon_sart: Fix docstring typo.
new b737dc9 Making hamming_distance more generalized; improving docs
new 8c4b31e Merge pull request #646 from ahojnnes/travis-bento
new 89c9b61 Fix casting in ransac example.
new a508924 Merge pull request #648 from stefanv/ransac_faulty_cast
new 8927147 Merge pull request #645 from josteinbf/iradon-sart-docstring
new 11a2883 Broadcasting in pairwise_hamming_distance; numpy optimization in match_keypoints_brief
new e7f9e67 minor modifications
new c8d5f70 Added _brief_cy.pyx in bento.info
new 8eec477 Moving _brief_cy.pyx changes in bento.info to the features section
new 70aedc4 Removed blank lines in between parameters.
new 083c13d Adding tests for BRIEF and pairwise_hamming_distance
new 09cfe0b examples: Avoid python3-specific syntax.
new f11d5a1 Merge pull request #652 from josteinbf/local-binary-pattern-example
new e80dd18 Add tests for 'regular_grid()'
new f0ecc4d Rename regular_grid.py
new 9a17db1 Refactor rank filter package for consistent naming
new 2641df3 Use typed memoryviews in rank filter package
new d251fd8 Improve code layout and styling
new ea8111d Use typed memoryviews for diff array
new cd7959d Fix styling of some comments
new aa973ae Fix wrong module name
new c9e8105 Capitalize parameter description in doc string
new ccd902f Extend bitdepth from 12bit to full 16bit
new e9fcdc4 Fix attack-release border initialization
new d1fb013 Fix test cases for full 16bit support
new 7fa8e70 Fix README for full 16bit support
new 984e542 Use missing memoryviews for bilateral kernels
new ce792d5 Improve description of bilateral filter
new f74c073 Add test case for bilateral filters
new 663092a Improve indentation
new 6c5eb12 Cast to int for python 3
new 68461db Update bento.info for refactored rank package
new 9a36e3b Log warning when bitdepth > 10
new 4de4053 Refactor rank filter package as combined implementation for 8- and 16-bit
new 68914b8 Update bento config
new 34ad95d Improve entropy example
new 7349204 Improve mean example
new d1e0949 Update entropy example with improved matplotlib usage
new d6fb12a Improve long rank filter example
new 43feb4b Update bitdepth warning
new 54c73fa Replace log warning with UserWarning
new 658201f Rename mean_subtraction, morph_contr_enh to subtract_mean and enhance_contrast
new ed21622 Use consistent description of output image
new 6ee9605 Append percentile, bilateral function name part
new c2939d5 Add TODO.txt
new af752b9 Add note about TODO.txt to release instructions
new e041c27 Deprecate old rank filter functions
new b9b5efb Replace deprecated function calls in examples
new 33a09c3 Add option to return double output image for rank filters
new 8ea6d1d Replace all float dtypes with double
new bb4a8af Add test for output dtype of entropy
new 6221ce6 Add test coverage for guess_spatial_dimensions()
new 858f741 Complete test_regular_grid coverage
new 8736a66 Fix typo using assert_raises in test_colorconv.py
new e3cd062 Fixing bugs and making code compatible with Python 3
new 71c70cc Added isotropic TV denoising + comment
new 7809e02 minor changes in isortopic tv denoising
new 49e8f28 Final changes
new 2bfaafd Radon transform: Redefine projection center for sinograms.
new 47b6d0c Radon transform: Document rotation axis location.
new 41c6f6d radon: Reduce duplication; simplifications.
new 288ee69 radon: Correct docstring of order_angles_golden_ratio.
new 462173a Radon transform: Include boundary in reconstruction circle.
new 60444ee Radon transform: PEP8 fixes.
new cb49e1c Replacing np.all by equivalent np.any
new 4549204 iradon: Clean up filter code.
new d5b72f9 iradon: Do not suppress 0 frequency for filter=None.
new 1c7947f Renamed parameter
new 983c658 eleminate empty line
new dc27bab Merge pull request #546 from jni/3d-slic
new 7e9ae43 docs: Makefile respects variables from environment.
new 8796262 doc: Allow specifying python binary.
new 875e47a Docstring for _dilate and _erode were interchanged
new 0295d54 Merge pull request #656 from josteinbf/doc-makefile
new 486909c Rename and combine local_* functions to block_reduce
new 7efb010 Add short doc string example
new dcea653 Merge pull request #611 from mkcor/install_pip-requirements
new 3d60b27 Merge pull request #657 from chintak/doc_fix_cmorph
new 2466df3 Stylistic changes
new 431261e Added if __name__ == __main__ in new test files
new 4c0fbb6 Merge pull request #591 from ankit-maverick/brief
new 90f3a5d Syntax and default variable.
new 228bf8f Adapted if statement to grid_shape=None
new 4b901cd add bento to build docs
new a973f3a Add javascript for locating latest stable version.
new 90d28a3 Highlight current doc version.
new 8e562af added revisions by @stefanv and @ahojnnes
new f70c6a6 updated gaussian doc
new fd02030 added testing dependencies and standardized use of bullets
new c25398a Merge pull request #660 from RONNCC/add_to_depends
new 641d1b4 remove extra :'s
new 3296000 added ahojnnes revisions
new 252778b Merge pull request #561 from RONNCC/fix_filter_doc_gaussian
new 09292dd Merge pull request #659 from RONNCC/add_bento_to_docs
new 2d33bf7 Added test case for grid_shape parameter.
new 35a65ae Resolved faulty montage2d import.
new b5d09bc Merge pull request #603 from TheChymera/master
new e866696 add color distance functions, ciede2000 tests
new c55ef2e Shorten Bento installation instructions and fix broken links.
new aadd346 Fix ratio scaling in SLIC
new 2a19db6 Environment variable is called WAFDIR.
new 61ad581 Properly fix WAF environment directory. Tell users to download source (not binary).
new c50c926 docs
new a821ad5 better cmc implementation
new f9ca27a don't need lab2lch
new 28f58a2 add tests. cmc stops naning
new 65d655e cleaner lch implementations
new 4fd18d4 fix path
new 5a1df64 Merge pull request #662 from stefanv/bento_installation
new b2b101c set testing tolerance
new 01d8cb2 make naming consistent
new 1dc46c8 add references
new 4b3c11d references
new f67a088 references
new 86f7c4a expose lab/lch conversion
new 499141c docs
new af3ea5f Remove unused 'ratio' argument from _slic_cython
new 3e99079 Precision issues appear to have vanished
new 1cd918e pep8 math operators
new b566ba4 use np.rollaxis
new 3326239 reference formatting
new 109f500 Replace deprecated import of _local_func with block_reduce
new 1cf83b5 Merge pull request #653 from iNand/master
new ab4e95e Fix typo in doc string
new 79a88f8 Wrap line
new 012f8b4 Add missing space in parameter defintion in doc string
new e848ba1 copy editing docs
new 547fa2f test for rgb2lch roundtrip
new 9db3ab1 deg2rad > DEG
new 42a2671 skimage attribution convention
new c36d1cf run_module_suite
new a0f8905 docs for deltaE_ciede2000 length scales
new 33a3a12 Merge pull request #667 from ahojnnes/denoise-fixes
new 0b0cb6a Adding Octagon structural element
new f4332ce Removing circular import
new 878c562 Replace 'ratio' kwarg with 'compactness' in SLIC
new 72833f1 Do not use 'ratio' in test_slic.py either
new 8a06261 Correcting grammatical typo
new 93819c7 Making the doc more explicit
new 364ebd7 copy editing
new 6585efb lab2lch/lch2lab for N-D images (w/tests)
new a8403d2 last round of copy-edits
new 5c5c670 Add missing p1 parameter to percentile and threshold functions
new 391e976 Add specific branch for the percentile p0 = 0 case
new 9f68e71 Fix accidential variable naming confusion
new 7be96b4 Integrate new test cases from @odebeir and fix old function names of dilate and erode
new f9f405a Fix invalid previous fix for percentile edge case
new a3bb109 Merge pull request #632 from ahojnnes/local-blocks
new d9196be Fix loop ranges of rank filter kernel functions
new d883b45 Fix Otsu rank filter kernel loop range
new cf46871 Merge pull request #626 from ahojnnes/rank-fixes
new 97e1174 Let travis also run long example scripts
new 3338c42 Add short comment for travis flake8
new 37dfd29 Fix image data type issues in rank filter example
new 3815221 Merge pull request #627 from ahojnnes/travis-examples
new 89dbb4d Add unique_rows function
new 11f9a5b Add test for unique_rows
new 640c496 Add unique_rows to util/__init__.py
new a6ec174 Remove repeated coordinates before computing convex hull
new b03fa92 Unique rows after getting the pixel corners
new e9c9c2c Move code comment to appropriate line
new c3582f2 Add (previously) pathological qhull test case
new ac6f282 Added star structural element
new 9d7a903 DOC: changes for Marianne's coffee cup
new dc692dd code cleanup
new 6dd35c8 Merge pull request #641 from sciunto/example_ht
new efe51c9 tuples are valid inputs
new e59a75b cleanup
new 060a4dd Minor doc changes
new 6716536 Test for Octagon
new 55d7eaa Improving the implementation of star
new 8569d73 Adding namespace
new 6455d9b Adding test for star
new d50af3f unneeded asarray
new 7fda900 Add cached_property decorator
new 697d7dd Merge pull request #666 from jni/slic-scaling
new be14f0b Merge pull request #654 from josteinbf/radon-square-center
new 918332c Refactor regionprops
new d94c25e Remove cached_property class from shared utils
new 9f8e904 Add note about backwards compatibility to TODO.txt
new 01871c1 Remove legacy doc strings
new 92e7054 Use asbolute import for Cython lib
new 909d4cb Add test to unique_rows for discontiguous arrays
new b40ef3a Ensure array input to unique_rows is contiguous
new a84388c doc cleanup
new 6e8dcd3 Adding tests for smallest selem
new d5caf07 Merge pull request #674 from ahojnnes/region-props
new 3b6e799 Remove unused cached_property from _shared.utils namespace
new fea0c3f Improve fromatting of regionprops doc string
new 4f8d4ce Hide cached_property and caching flag
new 01102f4 Merge pull request #669 from ankit-maverick/octagon
new 2086e44 Fix radon example script
new d5db109 Merge pull request #677 from ahojnnes/radon-example
new 946d892 Merge pull request #676 from ahojnnes/regionprops-fixes
new fe02c18 Use Py_ssize_t instead of int in _slic_cython
new 4edf227 Change 'long' to 'int' in Cython docs
new 35a33a9 Merge pull request #682 from jni/slic-type-hotfix
new 8b2f52d DOC: protect last character in URL
new 44b9cd1 Merge pull request #684 from sciunto/doc_fix_url
new 111a992 fix table formatting
new f019ed1 Fix missing label property description and backwards compatibility
new 43cdaa5 Merge pull request #688 from ahojnnes/regionprops-bugfix
new 2b43dab Added elements to the coffee picture docstring.
new 77165de Changed the 180 constant in bin calculation to avoid rounding errors
new 781bbaf Added partial implementation of censure for mode=DoB
new c40ab96 Line Suppression of the response
new c599b34 Correcting import for a private function
new 97990fb Adding TODO's
new 3d9534b Added mode Octagon using np.convolve
new 1484b9a Correcting typo
new 1bbeeb4 For loop for mode=DoB in Cython
new a0266c3 Commenting out _filter_using_convolve
new ab729a0 Removing time() statements and correcting types in censure_cy
new 92864fd Removing hard-coding in censure_keypoints()
new 1e4ae46 Returning keypoints with the scale info
new 25f89ee Correcting the expression of response in censure_keypoints()
new fdbdbfe Correcting the definition of Ratio of Principal Curvatures
new abb7bb6 Adding _slanted_integral_image. Removed _oct and _filter_using_convolve
new 474c738 Removing unused stuff
new d15741c Cleaning up the non-Cython version for mode=Octagon
new 7c32dc0 Cythonizing the for loops
new 5ecbb57 Adding the docs for censure_keypoints
new 6243d4b Trying to resolve Cython TypeErrors
new 4a19b60 Trying to Debug the SegFault
new f75fbb9 Trying to Debug SegFault : 2
new 345c169 Trying to debug the Segfault-3 : Making the arrays C-contiguous
new efba964 Fixing many bugs; Working Censure for mode=Octagon
new 50a1838 Adding doc for the different modes of _slanted_integral_inage_modes
new 8c38b5c Correcting the docs and making them explicit
new 3b9ee00 Commenting the sigma passed to _suppress_line
new 7df7f3a Removing unnecessary data-type conversion
new 6c14247 Removing unnecessary array pre-allocation
new ec7ea00 Changing no_of_scales to n_scales
new 555da87 Renaming *_wt to *_weight; correcting the object type of n in _censure_dob_loop
new 4d9bace Documenting the code; Removing ascontiguousarray statements
new 7478f2c Correcting indentation
new 3318886 Using convolve in _get_filtered_image for mode=Octagon
new 344374e Removing slanted_integral_image Cython functions for mode=Octagon
new 5ee71cb Reverting back to non-debugging mode in Cython
new 599ce8f Remove all the slanted integral image functions and the vivid graphics from censure.py
new 6472dd1 Wrapping the long lines
new 361652c Added a NOTE explaining the preference of convolve over slanted integral image
new 212874f Adding the STAR mode
new 8ef8ba5 Making the weight calculation statements more readable
new 973ab0a PEP8 corrections
new 87ef133 Replacing threshold by nms_threshold
new 54f9b06 Returning the keypoints and scales separately
new ccbca13 Fix bugs in censure keypoint detector and improve code
new bea9aa4 Changing the variable names of constant objects
new 5f46fd0 Correcting a bug in Line Suppression
new 54247e3 Putting constant variables outside the definition
new 91bb4ba Making the docs more explicit
new 1441159 Correcting the imports
new c3e18b0 Assigning boolean to the feature mask in line suppression
new 4b0b342 Actively filtering border keypoints on all scales
new 3752f19 Adding tests for all the modes in censure
new c9a93a1 Debugging Travis error
new fb4050e Reverting back to last but one commit
new 963f681 Making the code compatible with Python 3
new 1227507 Actively filtering border keypoints for all the scales part 2
new 6fc84dc Removing print statements
new 4f109d1 Returning mask in _remove_border_keypoints
new 62eb4ef Filtering out border keypoints using masking
new 1bd261c Replacing int32 by intp
new 157c22b Changing _remove_border_keypoints to _mask_border_keypoints
new 0b37611 Fix several bugs in DoB method and improve overall code quality
new 7665281 Lowercasing variables; removing unused import; replacing _remove by _mask
new 229910e Replacing censure_keypoints by keypoints_censure, n_scales by max_scale
new 6d1be9a Documenting the code
new c3b6ce2 Including min_scale as another input parameter
new 6c27d27 Adding remaining tests
new f2632f2 Adding gallery example for plotting censure keypoints
new b61b330 Adding a short description of the algorithm
new 3ee183f PEP8 corrections and stylistic changes
new 7c4152b Fix censure example and fix some minor issues
new 8d6d5f7 Adding Octagon shapes for higher scales
new cd5316c Importing star and octagon from morphplogy.selem
new ffbeeae Correcting selem.star for Python 3
new 56686fe Reverting back to changes made by Johannes
new 550dfce Final changes in censure example
new 9ad7c78 Documenting the choice of filter sizes
new 3c5a8ec Merge pull request #668 from ankit-maverick/censure
new e5fcece spell ciede correctly
new 0182f7c better roundoff handing of dH
new 673439f Merge pull request #692 from angelatlarge/fix_hog_orient_bins_rounding
new 5afb53a Edited docstring according to comments.
new 969927d Merge pull request #689 from mkcor/coffeepic-credits
new 752e395 Improve moments code and use typed memoryviews
new 1395712 Make moments functions public, rename, add tests
new c4caf8b Sort functions in alphabetical order
new ce924c7 Add test cases for moments functions
new 9fe1e26 more consistency in naming, better docstring
new d86b624 r is confusing, use ab instead
new cc91324 Fix PEP8 issues and typos
new b7274a7 Merge pull request #694 from ahojnnes/moments
new cd9f3bd Use typed memoryviews in draw package
new 3172f50 Use typed memoryviews in feature package
new f76ba9d Use typed memoryviews in filter package
new e78f9ad Fix reference of corner_foerstner
new 5d62f46 Merge pull request #696 from ahojnnes/foerstner-ref-fix
new 5b38bda Fix missing conversion of typed memoryview to numpy array
new a8f0d46 Fix missing conversion of typed memoryview to numpy array
new 561d20a Merge pull request #695 from ahojnnes/memoryviews
new b6f72c6 Merge pull request #665 from mrterry/deltae
new 93e83b3 Improve tests of graph package
new 8524203 Use typed memoryviews in measure package
new b8b2a63 Use typed memoryviews in morphology package
new c8f619e Use typed memoryviews in transform package
new 5f82c20 Fix bugs in usage of typed memoryviews
new 600305e doc quickfix
new 7e7fb2f comma usage
new bbf7a56 Merge pull request #698 from mrterry/deltae_docs
new d9836a6 Remove logger in favor of warnings.
new ca768b0 Remove unnecessary import of Warning.
new 05aeb7c Convert to int for Py_ssize_t
new 4b39779 Merge pull request #697 from ahojnnes/memoryviews
new 4215ad1 Remove leftover debug statement.
new 9a5a767 Merge pull request #700 from stefanv/remove_logger
new 2b0f037 Remove Image wrapper from io. Improve tags handling.
new 7df2ef1 Add tests for image tags.
new 8d0f917 Merge pull request #702 from stefanv/remove_image_wrap
new 22873b8 Added non rotation invariant local binary patterns
new eae691c Corrected duplicate variable declarations, variable name change from 'var_index' to 'rot_index' and corrected minor bugs
new 29212a3 Some additions to the user guide: getting started section + section on common numpy operations.
new ebe1a18 Minor modifications following review by Johannes
new 0c2f0dc Review the procedure
new cb28bba Add note describing array copy if discontiguous
new 072eb76 Add docstring note explaining coord use case
new 944b45a DOC: this step seems to be useless
new bd2a61b Add PyAMG to the optional dependencies list
new 13e83be Update PyAMG URL (no longer in Google Code)
new 4d80670 Merge pull request #672 from jni/chull-fix
new 1a4ea5c Merge pull request #710 from jni/pyamg-depends
new 8757356 Merge pull request #638 from sciunto/contribute
new 082586c Added a wrapper around ndimage's Gaussian filter
new c68dab7 DOC: add titles to plots
new 7b022c8 Finalized changes. Added reference for non rotation-invariant uniform patterns. Added test case. Modified comments to clarify the process, and changed the code to make it more consistent with explanations and actuall encoding
new d4eba56 Merge pull request #711 from sciunto/minordoc
new 15b4a4d DOC: corrected description of multichannel parameter
new 515335e Corrected name in reference [2]
new b4242ca [BUG] iterable sigma and multichannel
new f4a0977 Changed link to the reference [2]
new 9795d3f Gaussian filter function: changed the default value of multichannel
new 55e4230 Merge pull request #712 from emmanuelle/gaussian_filter
new 5eba5a4 FEAT: Full 3d anisotropic implementation of marching cubes
new 84618af import `marching_cubes` and `mesh_surface_area`
new 855031a add _marching_cubes.pyx to list of Cython modules to build
new 5b990a0 fix import of _marching_cubes
new 9779cd5 fix: bug in second `_append_tris` call in case 125
new 9a86aba rename files to conform with naming conventions
new d2e51aa fix import error from `_marching_cubes_cy`
new 44c0499 move `unpack_unique_verts` to Cython for speed
new 296d102 fix: symmetric ambiguous dual-plane cases require special treatment
new 165de87 fix error in triangulation of case 120
new f8cc479 FIX: dimension ordering now correct (x, y, z)
new 164b416 FIX: volume now directly cast, docfixes, C-contiguous ordering
new fcd20e5 FIX: use memoryviews, docfix, and change tri_list to face_list
new 19b8831 FIX: incorrect name for `unpack_unique_verts`, revert axis ordering
new b6f2590 DOCFIX: clarify docstrings and output vertex dimension ordering
new 997339b FEAT: add tests for marching cubes and mesh surface area
new 1bcc2b4 removing some unused selem declarations
new 586a7c9 Merge pull request #720 from michaelaye/patch-1
new 74b932e Remove unnecessary mirror option
new a401cb8 Merge pull request #721 from ahojnnes/travis
new fd729a4 Improve SLIC
new 6b5556b Reduce memory footprint
new 471b293 Remove unnecessary parameters and update doc string
new 84579a6 Remove legacy comment
new bc7efb0 Fix dtype bug
new bd38838 Fix bug in window extent determination
new f5cfbcf Reorder variable declarations
new e5eea8e Improve documentation of sigma
new eeddd9e Revert multichannel magic and improve parameter docs
new a6d1b10 Use absolute imports
new 80ed875 Add missing rgb2lab import
new b0d3b92 Add skip parameter to view_as_windows.
new d0d9fee DOC: Minor documentation formatting fixes in marching cubes
new 14a0685 MAINT: Refactor ellipsoid generator into skimage.draw
new c678fa5 DOC: Add concise marching cubes example to gallery using Matplotlib
new 50d73fd TEST: Add test suite for draw3d (ellipsoid/ellipsoid_stats)
new cd306ba FIX: Add _marching_cubes_cy.pyx to bento.info
new 1174d6f FIX: Errors in unit tests
new b5806d1 Merge pull request #722 from stefanv/shape_step
new abc7a16 STYLE: Use `np.array` instead of `np.r_` and import Poly3DCollection
new d2bc02c Credit myself for Marching Cubes
new d9e64b4 Make image C-contiguous
new 770e28d Rename clusters to segments
new 8137c41 Add optional description to parameters
new 8ed56ab Merge pull request #469 from JDWarner/add_marching_cubes
new 22ca0ae Fix indentation
new 34b1b7b Fix errors in relabel_from_one docs; PEP8
new 6f5f6a0 DOC: Further improvements to naming conventions.
new a315ae7 Add Yen threshold method
new e41887c Codestyle improvement
new 8beb2ae Yen PEP8 and docstrings
new 9e74f4e Added Yen tests, typo fixed
new 04804cc Logarithm optimisation
new c8c95c0 Fix import list sequence
new 2af5c41 Fix type hierarchy check in remove_small_objects
new 05aaeef Change default value of sigma
new 42eb3e6 Merge pull request #686 from radioxoma/yen-threshold
new 968206c Merge pull request #704 from alexis-mignon/master
new 445dd7e Merge pull request #630 from JDWarner/improve_noise
new 1b4a06f Merge pull request #727 from jni/fix-small
new bc2f23d Revert default value of maximum iterations
new ea1566f Fix image dimension sanitizing at function start
new 06e99a5 Merge pull request #5 from jni/slic-speed-fix-dims
new 88d84c7 Raise warning for sigma parameter and add to TODO for next release
new bf5f08e Update SLIC docstring to remove deprecated example
new 9d86c9a Ignore `convert2lab` keyword if not multichannel
new 610a0d1 Add support for list sigma input in SLIC
new 846765e Add spacing support for new, speeded-up SLIC
new 00e5ff2 Add `spacing` descriptions; use np.double
new 05fbc3f Bug fix: typo: wrote spacing instead of sigma
new 607ac23 Merge pull request #6 from jni/slic-speed-spacing
new 0ed1e22 Correcting bug in SimialarityTransform
new 52f01d1 Merge pull request #731 from ankit-maverick/SimilarityTransform
new a086f03 Document default value API change
new e17e769 Add note about (z, y, x) order in slic cython doc
new b3d4409 Merge pull request #7 from jni/slic-cython-docstring
new c540ef1 Forgotten contribution by riaanvddool: skimage.io plugin - GDAL
new d194118 Merge pull request #733 from riaanvddool/contribution-riaanvddool
new 54530d1 Update snippets in notes to use double backticks
new 845d083 Define 1d arrays as contiguous
new 8fb6fd0 Scale sigma only in scalar case
new 610b22b Merge pull request #719 from ahojnnes/slic
new a17a139 Fix doc string of warp functions
new c01e7c9 Fix various doc strings using the warp function
new 477c80d Merge pull request #740 from ahojnnes/warp-fix
new 4ab166b Merge pull request #726 from jni/fix-relabel-doc
new f81fbf5 ENH Faster perimeter computation
new ff0b315 RFCT Simpler code for initializing array
new c414e96 Merge pull request #746 from luispedro/master
new 99fb8b9 Some improvements for perimeter
new c1ea012 Add support for unsigned integer label images
new d782400 Raise error for non 2-D images
new 78a849c Fix dtype bug in perimeter
new 5ea79d4 Merge pull request #748 from ahojnnes/regionprops-dtype
new c414d0e Hide experimental GSoC functions for 0.9 release
new c3d4044 Remove call to deprecated is_gray function
new 3e3a523 Misc doc string fixes
new beeb597 Only clip for ndimage.map_coordinates case
new 9741bfd Add note about internal usage of transformation matrix
new ed85211 import Fedor's contribution
new 36e23b1 TEST: add unittest and check with travis
new 4c14e86 DOC: update return according to wu's method
new 62dbd7b TEST: fix returned tuple
new 62240c1 TEST: fix unittest
new dcf0223 DOC: fix refs
new 2606494 MAINT: put AA method in draw.*_aa
new bf31517 DOC: remove wu in methods
new 90335ef Implement line_aa
new 1a0f137 Anti-aliasing
new a4f1704 MAINT: bezier_segment is private
new d998166 MAINT: val in [0,1]
new 088b299 DOC: split non-AA/AA
new 718989e FIX: division for value
new 0467b92 PEP8
new 5c42347 PEP8
new 1548364 ADD: bezier_curve
new 9ceb489 DOC: add bezier_curve
new 296f8da MINOR: doctrings + various improvements
new 7299753 FIX: broken test (thanks unittest!)
new 055e820 MINOR: some comments
new 40f5e78 Add support for matrix as inverse_map
new ee24f1c Improve example of warp function to show all available options
new 2459ca1 Fix deprecated function name in example
new 27d1a5e Merge pull request #750 from ahojnnes/misc
new e807e25 Temporarily remove censure keypoints example
new bac7ede PEP8
new 741d6fd PEP8: comparison
new f82db28 MAINT: unused import
new 2e2a82a MAINT: matplotlib is in requierements.txt
new 628d484 DOC: no import numpy in doc
new 90db96f DOC: add missing import
new 8f20fff PEP8: fix indentation
new 4a7d2e8 PEP8
new a137326 DOC: fix indent
new 547c0bb Merge pull request #752 from sciunto/pep
new 9e00e24 Update PR plotter.
new 5ff79a7 Correctly plot cumulative sum.
new 1843829 Add relabel_sequential, deprecate relabel_from_one
new 37f66f7 Add relabel_sequential to __init__ import
new bfab493 Add new tests for relabel_sequential
new a8488bf Remove deprecated use of relabel_from_one
new a9afb24 Rename deprecated relabel_from_one in docstring example
new a15312e Only raise umfpack warning if cg mode is used
new fc15f75 Monkey-patch UmfpackContext __del__
new 512a390 Merge branch 'master' into debian
new 592525a New upstream release.
new 0cc89c9 Replace mentions of old package name.
new 8a06a22 Development guidelines moved.
new 1b1cbe2 Tiny formatting edits
new 535c141 Merge pull request #755 from jni/rename-relabel
new edfa25f Merge pull request #709 from sciunto/wu
new 248ac46 Remove unused imports in random_walker source
new fb86bac Add comment and links explaining Umfpack import
new bdafd1e ENH: optimized label2rgb()
new bfaf89e Deprecate default mode 'bf' in random_walker
new 0680f59 Add change in random_walker default mode to TODO
new bfe70fe Update SLIC in example to most recent interface
new 794176b fixed error in label2rgb() when label is a binary array
new 57e93d8 Merge pull request #762 from jni/update-slic-example
new 4db1e1b handle case when there are no labels
new cede721 Merge pull request #761 from kemaleren/optimized_colorlabel
new 6cf12ac Fix join_segmentations example using img_as_float
new e3c7ad0 Merge pull request #764 from jni/example-py3
new ea357a4 BUG: basestring not defined on PY3
new be3be53 TST: use BytesIO to save images into file-like object
new c519f60 Add support for consistent color labels for sparse labels.
new 4585567 BUG: Fix ValueError: Buffer dtype mismatch, expected 'long' but got 'long long'
new 4d46bc0 TST: Fix ValueError: Buffer dtype mismatch, expected 'intp_t' but got 'long'
new de42ba8 FIX: Fix and improve Poisson random noise generator
new 26c1fbd Merge pull request #767 from cgohlke/patch-1
new 3546b55 Merge pull request #771 from cgohlke/patch-4
new 5c73432 Merge pull request #770 from cgohlke/patch-3
new f10c362 Fix euler number bug for scipy-0.13
new 4e9cb03 Add missing perimeter function to __all__
new 394d904 Merge pull request #768 from cgohlke/patch-2
new c2e4442 ENH: More concise next-power-of-2 calculation
new a9995b6 Test whether labels are left alone in label2rgb.
new 3328a6e Merge pull request #773 from ahojnnes/scipy-0.13rc
new dca2556 Merge pull request #759 from jni/supress-umf
new 6a8889d Fix numpy 1.8 bug
new 895b025 Split grey and binary erosion tests in two files
new 95a5a98 Fix overflow error
new ecf10a7 Reduce number of specializations
new 2a84e45 Remove unused import
new b187144 Add support older numpy versions
new f8d34e8 Deprecate out parameter
new 2ac1111 Add labels to releases.
new 90d4fb2 Improve shape plot
new dec0c4a Merge pull request #6 from stefanv/tonysyu-consistent-color-labels
new f435afe ENH: Add optional `clip` kwarg, docs, & handling of signed inputs.
new 9f7a2f4 ENH: Tighten tests, all noise types now support signed I/O
new 7400e34 Merge pull request #774 from ahojnnes/shape-plot
new 78410e0 Merge pull request #769 from tonysyu/consistent-color-labels
new e9f3bd6 TEST: fix mistake
new 7a1b1c2 FIX: fix angle convention
new 7e970b1 MAINT change HT return API
new debd4d5 ENH: use heapq to select the best match
new 742699c TEST: fix precision
new 594a228 TEST: fix bad subs
new 1a9d5bb TEST: revert precision
new 6a114e8 MINOR: fix non ascii char
new 7c652c7 add missing import heapq
new e27b798 FIX: handle correctly main axis def
new 313bf0e fix example according to new API
new df2ee4d remove heapq
new 1236e97 MAINT: np.pi -> M_PI
new 003dbe4 MINOR: add missing type
new 4f58c07 FIX: import M_PI
new def4ab8 PEP8
new e68ba0d Use libc.math.atan2
new 6c67738 Miscellaneous fixes and improvements
new f20aa5e FIX: Better handling of skimage.data.camera for Python3 compatibility
new 98dcc73 Plot cleanup and tweak to total PRs line.
new e7b36b5 Add hough_circles change to API doc
new e93e865 Label dates every 3 months instead of every month
new 5dcb2d9 Merge pull request #776 from tonysyu/update-api-doc
new d075784 Merge pull request #7 from tonysyu/pr_plots
new c6a08d6 Merge pull request #675 from sciunto/ellipseht_heapq_fix
new 2c7bf85 Merge pull request #756 from ahojnnes/morph
new b022dd6 Simplify output handling for binary morphology.
new 4401392 Merge pull request #749 from ahojnnes/gsoc-experimental
new 9ff4316 Fix overflow in NumPy 1.7 as suggested by Julian Taylor.
new 9329d0a Restore @ahojnnes's overflow test. Correctly assign out argument.
new ceb2e4c Test that output argument is utilized.
new 4f74a00 Test that output argument is correct.
new 6111831 Revert to >0 for determining binary values. Document that input should be binary.
new f3845e7 Merge pull request #753 from stefanv/pr_plots
new e49a216 Added deprecation decorator according to discussion.
new 1c5dc10 FEAT: Add 'localvar' mode to random_noise
new e5e1918 REBASE: Resolve first conflict
new f25ca3a ENH: `spacing` kwarg for random_walker and improved tests
new 927ba2c FIX: roll back incorrect testing change of gradient order
new 0334925 DOC: Add removal of `depth` from random_walker in 0.10
new 961c47e DOC: Fix minor typo in docstring
new 4b0cf8d Merge pull request #772 from JDWarner/fix_poisson_noise
new 1de6d93 DOC: Change sampling kwarg name to spacing in marching_cubes
new 0a84938 Merge pull request #775 from JDWarner/spacing_random_walker
new 8185289 Add logger deprecation to todo list
new a229d19 DOC: Change sampling to spacing in skimage.draw.ellipsoid and tests
new b9f5dd3 DOC: Fix capitalization in ellipsoid docstring.
new d1ba9fa Merge pull request #780 from JDWarner/spacing_marching_cubes
new 5a0878d Merge pull request #779 from ahojnnes/log-depr
new 89d703c Pre-allocate memory for convolution and re-use for output, if no user-override specified.
new d5e2ab0 Allocate less memory, if possible.
new 2a944ef Update docs to match output.
new f83c7a9 Tweak markup of docstring.
new bba66db Provide stable doc version by naming docs directory 0.9.x, e.g.
new eb4c5c9 PEP8
new 69bdfe0 PEP8 another one
new 65f73ee DOC: fix syntax error
new ca6ecf0 DOCTEST: fix
new d182286 Always use uint8 for binary view.
new 853e673 Merge pull request #781 from stefanv/gh_stable_doc_versions
new 2f73028 Merge pull request #782 from sciunto/pep8
new 29d8e0d Merge pull request #778 from stefanv/binary_morph_out
new 93fb2d3 Merge branch 'master' of git://github.com/scikit-image/scikit-image into filter_median_dtypes
new d2d4b12 Added item to to-do list for version 0.10
new 3122c35 Oops! Typed one instead of the other again! Fixed.
new 998d64e Remove duplicate set_color function
new ffbe37a Add test case for set_color function
new a9e9012 Re-add missing parts
new 846baa5 Merge pull request #624 from mkcor/filter_median_dtypes
new a6f59a5 Merge pull request #783 from ahojnnes/draw
new 5e2b04c Remove deprecated is_local_maximum function
new 62e7220 Add deprecated is_rgb and is_gray functions to todo list
new 8c5aa37 Remove deprecated tv_denoise function
new 5c9d7af Remove deprecated hough_* functions
new 3f39885 Re-add tests
new a17cfd9 Remove print statement
new 99ae582 Merge pull request #784 from ahojnnes/deprecations
new 4b02e31 TST: Fix test_weighted_moments is defined twice
new f5337e3 TST: Fix AttributeError: '_RegionProperties' object has no attribute 'weighted_moments_central'
new e75126a TST: Fix RuntimeError: data type not supported on Python 2.6
new 6711bfb Rename weighted central moments property
new 5054670 Fix dtype error on 32bit systems as convolve is only implemented for 32bit integers
new 2bf47ad Change data type of convolution to more general uint
new 9bdfc81 Merge pull request #789 from ahojnnes/binary
new 714afb4 Merge pull request #787 from cgohlke/patch-2
new 783e120 Merge pull request #788 from ahojnnes/patch-1
new fb18f62 Update TODO.txt after deprecations.
new f728973 Note deprecations under API changes.
new 3e71755 Rewrite contributor lister in Python.
new 3d1a268 Add contributors to 0.9.
new 815e60b Update author order for 0.9 release notes.
new 14687d0 Dictionary interface to preserve backward compatibility for RegionProps.
new 94cad28 Fix Python 3 list handling.
new 8e763f4 Fix Py3 exception in GTK plugin.
new 18e8e58 Merge pull request #792 from stefanv/gtk_py3
new 354c850 Merge pull request #791 from stefanv/regionprops_as_dict
new bfb0cfc Speed up memory views in local_binary_pattern
new 342205f Speed up memory views in line drawing function
new 3e28168 Speed up memory views in skeletonize function
new 1b66ab4 Speed up memory views in watershed function
new be0cff3 Merge pull request #794 from ahojnnes/lbp-memview
new 65d35de Update contributors script to count by date.
new ce6b1d0 Contrib script now shows PRs and merges.
new 2ef03fe Update 0.9 release notes with new features.
new 332bcac Update versions for 0.9.0 release.
new 3901f74 Update version in docs.
new 1354195 Correctly determine version number from module.
new f5f8a2c Fix markup error in marching cubes docs.
new 4edfdbf Update gh-pages instructions in RELEASE.txt.
new 1a3e98e Mark BRIEF and Censure as experimental in release notes.
new 1bdfd07 Update docversions correctly for 0.9.x.
new 4d1a493 Update manifest not to include gh-pages in docs.
new 4b002d7 Set version numbers for 0.10 development cycle.
new 29c4212 Update website update instructions for release.
new baf70ef Correctly determine dev version for doc building.
new 0bf06fb Get rid of that inherited 's' once and for all.
new f7fb79b Get rid of that inherited 's' once and for all.
new 26bbab9 Update manifest not to include gh-pages in docs.
new 9b618a1 Add missing files to MANIFEST for sdist upload.
new edbacd1 Set version to 0.9.1.
new ecfd9a3 Set version to 0.9.2 for second try at PyPi upload.
new 57e3735 FIX add missing min_size parameter, add regression test.
new 96f04ad slight performance improvement.
new 70ccf0d Merge pull request #795 from amueller/fix_felsenszwalb_minsize
new 67cbb02 Fix bug in homography detection
new 5873159 Explicitly cast image shape to integer value
new 0b98803 Add some more comments
new 638d43c Re-enable clipping which was accidentally removed
new 114bb36 Do not derive piecewise affine from projective transform
new 2e98d8c Added novice submodule after rebase
new bd51d9c Fix whitespace
new 34a844d Cleanups to imports and line wrapping
new 1a418f8 Clean up novice __init__
new 22a7558 Change test class to test functions
new a2f03d3 Speed up test
new 9503c41 Cleanup docstrings.
new 62c16bd Remove color scraping script and intermediate data file
new e86b0a1 Change inflate/inflation to rescale/scale.
new 2cf9466 Clean up docstrings.
new c881cf3 Remove unnecessary functions.
new 896e471 Fix `modified` flag behavior
new 0663626 Clean up color_dict definition
new 266c28b Reuse colors from skimage.color.
new 087d422 Rename novice package as per convention
new f47c5a7 Switch argument order for clarity
new 9385e73 Clean up testing
new c5bfed2 Fix validation bug and add test
new 3619e6f Rename image to array
new 8869724 Remove color and size from Picture.__init__
new a951232 Remove `from_path` and `from_array` methods
new 7c1de57 Simplify data access and add tests
new b8443bd Remove unnecessary try-except.
new 450d04d Simplify private docstrings
new 7999e3f Refactor and add error tests
new 72c1f68 Rename for clarity
new e83003c Simplify indexing
new b50d46b Change PixelGroup to inherit from Picture
new 12e2a25 Move methods from PixelGroup to Picture parent class
new a5ad214 Move key validation for clarity
new cedfa8c Make xy_array public
new 19a9e72 Remove PixelGroup dependence on pic and key attrs
new 35a9cd4 Fix setter for xy_array and reuse.
new 59375f2 Rename for clarity
new f1e0197 Remove PixelGroup and just return a Picture
new 51c3d23 Fix doctests and cleanup `repr`s
new d177aa6 Replace use of elephant pic with Chelsea the cat
new be1d81f Simplify interface
new 6ca30b0 Speed up doctest
new 68c1880 Remove old image reference
new 3c33965 Add docstring for arrays
new 1093139 Rename image for clarity.
new 7ba0540 Simplify docstrings
new 4682f44 Ensure that image shows when not run interactively
new 555d245 Fix display in IPython notebook
new 0b2103b Remove extra newline
new 5a7e191 Fix Python 3 incompatibility
new 20ad4bb Fix the same Py3 incompatibility in a different place
new 8f506be Fix Py3 range incompatibilities
new 6ce788a Add support for negative indexes/slices.
new e794aed Add support for non-unit step
new 36cfd6d Merge pull request #600 from tonysyu/novice-package
new f5c6853 Novice module can open images from a url
new 8093999 Luv colorspace conversions
new 57eb694 Adding references regarding Lab and Luv spaces to docstring
new 36e56e2 Removing unneeded division checking code
new 9d9d16d renaming machineEps to eps to match convention
new df6a112 flake8-compliant formatting
new 4458081 Cleaning up docstrings
new 9d91751 Switching to RGBA
new 1d6531a Fixed Python 3 import errors, added alpha and rgba properties
new c05d18a docstring changes to correctly format input/output, clarifying XYZ and reference white
new 888ef05 Adding note for Luv colorspace to top docstring
new d577665 Merge pull request #796 from ahojnnes/warp-fix
new 9200890 Merge pull request #796 from ahojnnes/warp-fix
new af16654 Set version to 0.9.3
new eb6867c Make six an external dependency.
new 6df2100 Add python-six as Travis dependency.
new 9c20b1e Install six from PyPi. Travis version is too old.
new 3dd1bc1 Format color conversion docstrings.
new 133a698 Merge pull request #1 from stefanv/luv-colorspace
new e45aee3 Modify mpl_image_to_rgba to allow RGB input image
new 522778b Trying to get imports working with both Python 2 and 3
new 5aec007 Fix ColorHistogram to work with Open File
new 3ac124b Merge pull request #802 from jni/allow-rgb-save
new eff276c Bug: Fix label sequence in regionprops.
new cfeb040 Merge pull request #807 from josteinbf/regionprops-label-sequence
new 7d4544f Merge branch 'master' of https://github.com/scikit-image/scikit-image
new f11ef60 Fixed import of urlparse and rebase on upstream
new 8e695f8 Add rank filter tests as data dir
new 22273a5 Fix 16bit rank filter test in python 3.x
new 7774a76 Add plugin return values for ImageViewer
new fae2456 Allow OverlayPlugin to return the current overlay
new b03bac0 Merge pull request #809 from ahojnnes/rank-setup
new bc3b229 Update pip requirements.
new 4e05ebf Incorporate @tonysyu's suggestions re:docstrings
new a472021 Merge pull request #801 from stefanv/six_external
new f4b211f Add make instruction for doctest
new 313c444 Let travis run doctests
new 610f589 Fix corner doc tests
new 40fc5d2 Fix corner_subpix function for corners near border
new dc35d3d Add example for corner_subpix function
new c7fbd32 Fix doctest of remove_small_objects
new facc8f5 Fix watershed doctest
new 87dcaa4 Fix hough_line_peaks doctest
new c737861 Fix block_reduce doctest
new 41d1246 Fix RANSAC doctest
new 45eae57 Use NORMALIZE_WHITESPACE directive for block_reduce doctest
new 256a0ba Fix montage2d doctest
new 411de75 Remove plotter from doctest and use comparison to np.histogram instead
new d726a54 Fix precision of output in hough_line_peaks doctest
new 80ec4fc Install nose from PyPI
new 326557e Remove unnecessary coverage directive
new 31b52e9 Install PyQt4 for doctests
new 757c081 Install Cython from apt
new bf82a0a Fix PyQt4 for python 3
new 7bf858c Install xserver
new 0f303a2 Install Cython via pip
new cc33e53 Use xvfb rather than xorg
new 0e32735 Do not change into a separate directory for testing
new 66219e8 Build extensions in-place
new 1dc346f Fix duplicate percentile names rank namespace
new e92f415 Fix duplicate find_contours names in namespace
new 5038a0e Remove numpy prefix from pad function examples
new f038a95 Skip ransac doctests
new 20e8e72 Only build in-place
new 8047d5f Update bento.info
new 8daeb65 Fix novice doctests
new 2e7f14d Fix multi image doctest
new 23444a5 Explicitly cast window extent to integer for python 3
new 753cc6f Fix novice doctest
new 6e6ca86 Fix corner_foerstner doctest
new 8b74ab4 Fix python 3 syntax error
new a1fcc65 Also run doc tests for files with a leading underscore
new b7b391c Temporarily disable brief test cases and ignore test files with a leading underscore
new c6f9b53 Fix rank order doc test
new 099b428 Fix marching_cubes doctest
new ad0347d Fix regionprops doctest
new dd572a6 Fix medial_axis and skeletonize doctests
new 591aa08 Fix geometric doctests
new 0dd36ab Fix downscale_local_means doctest
new aaf0749 Fix hough_line_peaks doctest
new 863e89b Fix data type issue in python 3
new bb1f7df Improve usage of doctest directives
new dd06dc8 Use a better way to comment out the brief examples temporarily
new e282b3e Revert ellipsis to skip directive
new 64e21e9 Use travis-ci python config
new f76f06c Discard pip installation and install matplotlib from PyPI
new 49fc67c Simplify travis config
new 4fa7b5b Touch non-existent matplotlibrc
new 729c38c Fix matplotlibrc configuration
new a242f00 Add python 2.6 and 3.3 environments
new c9a0e53 Remove python 2.6 and 3.3
new 615866a Cast label_field to integer dtype for float intput
new 7f27d5b Fix label2rgb bug
new fb1c1d3 Fix misspelled sections
new ad34647 Fix doc string syntax errors
new f651cba Reduce runtime of daisy visualization test case
new f8a0fcb Reduce runtime of radon test cases
new b4c190e Explicitly set sigma value to 0 to avoid warning
new 3b1182c Skip show commands for doc tests
new 7ddcbfe we never released -2
new 825ebdf Add note about disabled doctests
new ffc28d1 Enable doc tests of ransac function
new 6ff1068 Add output for color histogram plugin
new 4566c36 Add doctest function to skimage
new b1d146d Use skimage test functions instead of nose commandline
new 307725e Add --exe directive to doc test
new e472528 Return correct exit code for tests
new b9b50dc Make sure stdlib io is not shadowed by skimage.io
new 2bc4cf6 Skip failing ransac doctest
new df4ca92 Reduce runtime of long doctests
new 12d2e9a Fix indentation
new 83f7f37 Use explicit interger division
new b00e181 Merge pull request #811 from ahojnnes/doctests
new 6239ab2 Merge pull request #810 from jni/viewer-returns-overlays
new 6583b46 Add coverall support
new 588a86e Execute coveralls without flags.
new 531f0c2 Change to test directory before running coveralls
new 5d9d5e9 Ignore setup. No need for tmp dir any longer.
new 1280f38 Fix invocation of nosetests.
new dcc18ca Merge pull request #819 from stefanv/coverall_support
new d398b43 ENH: Add `doctest_skip_parser` allowing conditional skipping of doctests
new f8b5550 Merge pull request #804 from tonysyu/viewer-color-hist-fix
new 54d7031 FIX: New versions of FreeImage report software as "I", not "ImageMagick ..."
new beb395a FIX: Skip `viewer.show()` commands which hang Travis
new 9d6eee4 Merge pull request #822 from JDWarner/fix_freeimage_metadata_test
new 695da41 Removed extraneous trys for six imports
new 1312670 Merged with upstream
new 98ff6e5 FIX: Specify field index for Python 2.6 compatible use of str.format()
new df8a14f Merge pull request #798 from matttrent/luv-colorspace
new 7e44418 Merge pull request #823 from JDWarner/novice_py26_compatible
new 41e289c Fix hough_circle regression on windows
new 3c84888 Remove duplicate greycomatrix function definitions
new e74db66 Add test case for *_boundaries functions
new a2cde5e Test invalid inplace operation
new 4d9ecf3 Add missing deprecation removal to todo
new de9e0fd Add missing deprecation removal to todo
new a2161af unwrap: initial commit
new 9c58dd5 unwrap: compiles, test passes
new c5681dd unwrap: cleanups
new a660ccc unwrap: compiles ok
new 6f40c95 unwrap: moved global variables (wrap_around) to params struct
new c6c2d78 unwrap: implemented wrap_around arguments
new adb9344 unwrap: changed mask values to numpy.ma convention
new 91a621b unwrap: variable renaming
new 0682b0e unwrap: accept (and return if given) an masked array as input argument
new c61ae90 unwrap: added original 3D unwrapped code
new 3d4fb95 unwrap: moved pure python code from unwrap2D.pyx to unwrap.py, allocate output array in pure python
new cf04965 unwrap: removed use of global variables
new 1b3b698 unwrap: added 3D unwrapping (untested)
new 96c293c unwrap: unified 2d-3d interface, 2d tested ok,
new 2cbdef4 unwrap: 3d tested ok
new abb283f unwrap: made it compile with MSVC (but crashes), still ok with gcc
new c88bbf9 unwrap: Fix crash on Windows
new 0231f72 unwrap: Fix crash on Windows
new 22f23c2 unwrap: Fix crash on Windows
new 73b0395 unwrap: Fix crash on Windows
new b614206 unwrap: Fix unicode
new 6ba69a3 unwrap: added numpy test cases
new aef6d7d unwrap: add unwrap.py to python modules in setup.py
new 5692989 unwrap: Move files to skimage directory tree.
new 4aa1bfb unwrap: Delete old setup script.
new 4c84106 unwrap: Remove executable bit.
new 3bd6044 unwrap: Rename cython files to skimage conventions.
new 011ea02 unwrap: Add setup script to build extensions.
new 0df05f6 unwrap: Use new imports in python module.
new 05419e4 Make unwrap visible in the exposure package.
new e780bd7 unwrap: refactor tests.
new d2fb06f unwrap: Whitespace fixes.
new e72e5de unwrap: Move imports to module level.
new f67b036 unwrap: Fix whitespace in c code.
new 933e2c7 unwrap: Add unfinished docstrings.
new b29dd83 unwrap: Refactor wrap_around argument.
new 26138fb unwrap: Refactor to skimage-style variable names.
new 37f36cd unwrap: Add docstring.
new 5bfbd7c Add example for phase unwrapping.
new a2a6f8d unwrap: Use relative imports
new 2f78436 unwrap: Correct use of relative imports.
new 8a81624 unwrap: Format references correctly.
new 0e56ee9 unwrap: Remove plotting code.
new ebef821 unwrap: Add citation for 3D.
new 54865ec unwrap: reformat references
new ac33066 unwrap: Remove unused imports
new 0e8be31 unwrap: Simplify handling of masked arrays.
new 6dbe696 unwrap: Test wrap_around functionality.
new 12268ff unwrap: Refactor and fix wrap around functionality.
new e8fa499 unwrap: Whitespace fixes and comment removal.
new 676ba5a unwrap: rename cython functions.
new 5022cfb unwrap: PEP8 fixes for cython extensions.
new 9644ed5 unwrap: rename variables in cython extensions
new a396951 unwrap: Update bento.info.
new b9f119a unwrap: Python 3 compatibility.
new 43d1106 unwrap: PEP8 fixes.
new b0c21ea unwrap: Reduce duplication in tests.
new 619da81 unwrap: Reduce code duplication.
new c0d0984 unwrap: Make sure test data wraps along all dimensions.
new 8a93677 unwrap: Delete "example" from the test file.
new 9e50686 unwrap: Add test for unwrapping masked images.
new 3ddd94a unwrap: Simplify example.
new e0b7fe3 unwrap: PEP8 fixes.
new 4cfec88 unwrap: Small style-like fixes.
new 781ead2 unwrap: Rename function unwrap() -> unwrap_phase().
new 27c13a1 unwrap: Warn about singleton dimensions in 3D arrays.
new b2ac1a5 unwrap: Add docstring example.
new f87fadf unwrap: Rename C files.
new f53a4e0 unwrap: Add naive 1D unwrapper.
new a6e7bd4 unwrap: Use constants from math.h in C code.
new ebf457c unwrap: Convert 2D C code from float to double.
new 9bacb0d unwrap: Use UNIX line endings.
new 9091d27 unwrap: Change 2D wrapper code from float to double.
new d0ccbe7 unwrap: Change 3D C code from float to double.
new cd5cc84 unwrap: Change 3D wrapper code from float to double.
new 593a7d6 unwrap: Change 1D unwrapper from float to double.
new 8ad3d1d unwrap: Simplify code after completing float->double.
new a10f1c1 unwrap example: cleanup.
new 3737e6e unwrap example: Mention dimensionalities available.
new 38d5022 unwrap example: Include masking and wrap around.
new 37b5a94 unwrap tests: PEP8 fixes.
new ccbd3bf unwrap: Do not include debug symbols in extension builds.
new 06a9c5d Add test case for union of heterogenous tform types
new 0fb48a6 Add test cases for abstract geometric base class
new 4ba9eaa Test invalid input
new bd240d9 Test scale determination for 0 rotation
new 62f51e3 Add missing test coverage of polynomial tform
new e159fa0 Add test case for estimate_transform
new da42c46 Add matrix_transform function to namespace
new d659cdc Deprecate reverse_map parameter and add to future removal list
new 396b686 Add test case for invalid image dimensions
new c53e98a Fix bug in inverse warping and add test case
new 2e8a36a Rename test to enable hidden line model test
new 6e6505e Increase test coverage of regionprops
new 4033566 Add test for invalid parameter combination
new 335a74e Add test case for eps corner_harris method
new e904454 Add test for mask output of corner_peaks
new 8c734ea Add missing removal of deprecated function to todo
new 51f94d8 Less verbose entry in CONTRIBUTORS.
new 0a2ed35 Add test for negative input image
new 5b3c21a Add test for neggative gamma parameter
new 43f6ae9 Add test case for explicit use of radii and sigmas parameters
new 7afae27 Add contributors for phase unwrapping.
new 4d6308c Fix error in line model test
new 8d04052 Ignore main sections of library code
new a9534f4 Merge pull request #644 from josteinbf/phase-unwrap
new caf183a Merge pull request #827 from stefanv/coveralls_nomain
new 6c9cfc5 Merge commit '8a06a2277366d01c5e7e25d3ded0f04ba9aa0b85' into debian
new 589681e Adding a copyright/license info for skimage/_shared/six.py
new 5ef665a Merge tag 'v0.9.3' into debian
new 9e1e3db debian/changelog: adjusting version for 0.9.3
new 840ddf1 debian/patches - changeset_0eea2a48fe2dca7bbb3681fcd5b511579cad6347.diff and up_correct_version removed (upstreamed)
new 24949dd debian/rules - added export http(s)_proxy to point to non-existing localhost proxy, so we could guarantee no network is used at pkg build time
new 089df03 appantly python-imaging is now python-pil, thus adding alternative depends and recommends
new 52c1af8 python3-scipy was missing from build-depends
new b33e85f BF: forgotten build-depends on python3-matplotlib (making it optional if no python3 build for them yet)
new f63544d we should not build docs in -a and dh_sphinxdoc should not give us problem either
new 82ff8dd Use ``cythonize`` instead of hard-coding Cython commands. Fixes #829.
new 9ae0313 Ignore failed attempts to remove .so from original arch all pkgs (in -a (arch-only) mode those directories are absent)
new 86c90a3 Merge pull request #821 from JDWarner/add_conditional_doctest_decorator
new f23d36f debian/tests/control - [thanks Julian Taylor] adding pil|imaging, tk, matplotlib to Depends
new ba9c985 Quick initial implementation of ORB descriptor in Python
new 03980b1 Quick Python implementation of FAST corner detector
new 5f1976a Implemented FAST corner detector
new 5c6420d Adding docstrings and commenting the code
new cfcefe1 Adding high speed test for n>=12
new 5a886e6 Making various minor optimizations
new b8958cc Transferring all the FAST code to corner.py and corner_cy.pyx
new 1fe1241 Using inline function in corner_cy._corner_fast
new 68fa6b0 Deleting FAST files
new df43c5c Converting image to float
new 53c9e3e Adding additional parameter for setting shape for Non-max suppression
new fbc15c9 Wrapping lines; returning corner_response at a pixel
new e064159 Returning the corner response
new 3a37505 More optimizations
new 97f0a38 Fix some performance regressions in Cython implementation of FAST
new 2e08829 Fix some performance regressions in Cython implementation of FAST
new aeef8ef Fix invalid circle coordinates
new 63b47a7 Quick initial implementation of ORB descriptor in Python
new 8fd9a77 Quick Python implementation of FAST corner detector
new 6b3751a Implemented FAST corner detector
new 94e4a88 Adding docstrings and commenting the code
new 462a8f8 Adding high speed test for n>=12
new 5160c3c Making various minor optimizations
new b03053a Transferring all the FAST code to corner.py and corner_cy.pyx
new 0b3414f Using inline function in corner_cy._corner_fast
new 967524b Deleting FAST files
new fc1d02e Converting image to float
new 2c47860 Adding additional parameter for setting shape for Non-max suppression
new 4f99aaf Wrapping lines; returning corner_response at a pixel
new 4840dac Returning the corner response
new da30925 More optimizations
new c81fd76 Fix some performance regressions in Cython implementation of FAST
new 6576baa Fix some performance regressions in Cython implementation of FAST
new 985067d Fix invalid circle coordinates
new 91a51f9 More clear docs; Wiki reference; removing rebase leftover
new 8304824 Implemented corner_fast_orientation function
new 04e9cef Using Py_ssize_t and np.intp for cfast_corners
new 3b76623 Adding tests for corner_fast and corner_fast_orientation
new b2bf0ba Speeding up corner_fast_orientation
new 84317b6 Speeding up corner_fast_implementation : 2
new 1aef50c Adding an example; removing redundant stuff and more
new 07623e1 Transform corner_fast_orientations for application to arbitrary corner types
new a1c1a80 Move FAST corner function to other corner functions
new 0e92031 Making changes in test_corner
new b0814a5 Make structure tensor function public and add function to compute hessian matrix
new 02e81ac Add missing imports
new 3e2ca14 Add test cases for structure tensor and hessian matrix functions
new aee31e9 Add functions to compute eigen values of structure tensor and hessian matrix
new 53a339e Add examples for structure tensor and hessian matrix functions
new 186e447 Add test cases for eigen value functions of structure tensor and hessian matrix
new 3e1b6c2 Making the example more explicit
new f9b6e1b Inserting corners in the corner_orientaions example
new 7d8c591 Implementing keypoints_orb without using Harris response
new f94bf86 Returning best_keypoints
new 3110916 Docstrings; Stacking lists; removing redundancy in corner_orientations
new e8eb2de Adding explicit test for corner_orientations
new 07fdfdb Implementing descriptor_orb; for loop in Cython
new deb1f70 Returning keypoints; Adding docstrings
new 4ef1221 Minor doc change
new 914ab05 Better naming of arguments
new 0bbc1d7 Writing better Cython code
new c060df2 Stacking lists in descriptos_orb
new fe2e214 Adding example in descriptor_orb
new 9e8979f Converting descriptors dtype to bool
new 607d90c Minor optimizations; Renaming variables; Docstring corrections
new 43d90d0 Adding square examples in keypoints_orb, descriptor_orb
new fe9f1e7 Introducing the _prepare_grayscale_input_2D function in feature.util
new b996776 Making pos0 and pos1 as global variables
new 2607539 Fixing the import issue
new 1fac309 Better wrapping of lines; making ofast_mask a global constant
new 3ec1d35 Miscellaneous fixes and improvements
new a53d93e Improved match_binary_descriptors function
new ba92c47 ORB matching example
new f0fea63 Minor code changes; Explicit docs
new a10fc66 Changing values of default parameters and OFAST_MASK
new a93fe9d Correcting the orientation bug
new 11403f9 Making matching graphics more clear
new 73afae9 Documenting the example code
new 6e566e8 Minor doc change
new ed738b3 Minor doc changes
new e9762f2 Incorporating mat_binary_descriptors changes in test_brief
new ffd144e tests for match_binary_descriptors; many corrections and changes
new 58515ad Cleaning util.py
new 142ad4e Adding tests for orb; fixing some bugs
new 3a0cebe Fix missing import
new 94d9066 Absolute path fix
new 5611da4 Introducing recarray for storing keypoint variables
new 38bdd3e Made recarray changes in docstrings and tests
new 1a2efa7 Extending recarray changes to BRIEF
new 0d79b39 Incorporating recarray changes to match.py
new 172c5ae Made recarray changes in the brief docstring
new a9106ab Recarray changes made in example
new 87c566c Finish create_keypoint_recarray helper function
new ea1ae45 Improve BRIEF and various tweaks
new d4bc4cf Improve FAST example output
new cf68bfd Add comments to FAST implementation
new 2f11f22 Improve corner_orientations example output
new 845448a Implement object oriented interface for BRIEF
new e839ce2 Reactive BRIEF test cases
new 69dccda Add test case for border keypoints
new 29026e7 Improve example output of corner_moravec
new 7961681 Implement CenSurE detector in object oriented interface
new 2705907 Refactor ORB
new 2713d32 debian/control - swap order of Build-Depends (and Recommends just in case) to favor python*-pil over python*-imaging so builders do not get confused
new f22e00e Refactor match_descriptors and fix small bugs in ORB
new 5662d70 Use dynamic pad-width for arbitrary mask shapes
new dea338b Fix test cases
new 7223473 Update bento.info
new d7b598c Fix legacy import
new 89dc0ac Update BRIEF example
new f9cfdb7 Add example to ORB doc string
new 88f7038 Add note about usage of ORB
new 85efc6a Add example to doc string of CenSurE
new 23a1e22 Fix corner doctests
new 9d585ae Add test cases for feature utilities
new 89233d8 Fix imports for Python 3
new 87131db Add test for unsupported mode
new abd1295 Add short description to ORB example
new 8fbc81e Add convenience function for plotting matches
new ae1c2a2 Use new plot_matches function for plot_matching example script
new 0559105 Remove prints in test function
new d00b851 Fix wrong parameter name in doc string
new 23f9499 Convert shape to list to allow for in place modification
new 0b34d01 Add example script for BRIEF
new 9871ed7 Add example script for CenSurE
new c0af3aa Improve layout of gabor example plot
new 76e0f7a Fix and improve circular hough hough transform example script
new 7e45baa Fix overlapping text
new 444d574 Fix overlapping text
new dcbbd55 Improve local otsu example script
new 1869ea9 Fix overlapping xtick labels
new 64b9c18 Show hidden text
new 1720629 Improve ssim example
new d609eb1 Attempt to fix Python 3 error
new cba85c2 Add tests for plot_matches
new e0e4f69 Fix parameter list in doc string of plot_matches
new ed33dba Combine match indices in one array
new 57016f4 Recover hidden test cases caused by duplicate function names
new 4406c0f Speedup corner orientations
new 23f5ae5 Fix plot_matching example
new 0c81e14 changing docstring to make clear that only 2-D images are currently supported
new 689b59a Merge pull request #839 from rtack/match_template_DOC
new 5abd6e3 Add missing plot directive
new 46cdc17 Merge pull request #838 from ahojnnes/gallery
new 121fa8f Fix description
new a5e2b99 Fix typo
new f6ba14b Add missing optional description for kwargs
new cff0078 Merge pull request #825 from ahojnnes/coverage
new b8c30ba Move image stack to its own module
new 312151b Move __init__ functions to submodules.
new 03388d4 Use explicit imports
new 79587ea Remove debugging statement
new c820699 Remove unnecessary class
new 552f24b Remove unnecessary initialization
new f8ea426 Refactor io doc building code
new a23e31b Factor out table formatting code.
new 1d39961 Minor rename
new 77ff061 Fix wrapping of plugin descriptions
new 8a2e882 Factor out config-file parsing for clarity
new 41e62fa Add comment for clarification
new 86abc7c Factor out url handling for unified file/url behavior
new 318781b Add test that error gets raised when no plugin available
new 90f1e79 PEP8
new db45127 Fix test so it doesn't have side-effects
new e04066d Change InheritedConfig so a key is contained if a parent key is contained
new fabe4fa Move tests to separate file.
new f1dce4b Change plugin_store to use InheritedConfig
new 860c6b5 Use InheritedConfig for plugin_store
new 6994bc5 Add test for loading preferred plugins.
new ac4eb5a Make preferred_plugins a dict
new 0922ccf Refactor load_preferred_plugins
new 99aa5a8 Move io._plugins.plugin to io.manage_plugins
new e59daf4 Modest attempt at normalizing file extensions
new ed0ae50 add rank filter sum
new fe0e252 shorten line
new 39b256a fix:rank.sum docstring
new 0fc0c9f fix:rank.sum docstring
new ef5de41 fix:rank.sum docstring
new 1f8adcc fix:indent
new d98ed72 add:rank.sum_percentile
new 3f08779 add:rank.sum_bilateral
new 0b8d83c fix:rank.sum docstrings
new 9d734ad fix:docstring in sum_bilateral
new cb310fe fix:rtank.__init__
new 2e84dc6 fix:indentation
new 0f88bed Remove inherited config and file-type-specific code.
new c329ff1 Fix failing doctest on systems w/o PIL
new 99c5ba4 Slight clean up of tests
new c09f1bf Revert previous 3 commits to test Travis CI failures.
new 27bab63 Un-revert "Fix failing doctest on systems w/o PIL" commit
new 6a75104 Un-revert commits added to test Travis CI failures
new f04e142 Fix doctest which causes side-effects.
new b715b79 Test Image._repr_png_
new f7fa404 Test null plugin
new d7cf60e Attempt to fix failing test on Python 3 buildbot
new 783c04b Fix bug in array padding, template matching
new 2e9e6a4 Fix doctests
new 33d00e7 Update arraypad tests
new 84e03ec Add support for 3-D template matching
new 8443c84 Reuse 2D sum in 3D sum
new baa0b2c Add tests for 3-D template matching
new 7924c46 Add tests for wrong input shapes
new 688778b Move inlined function definitions to header for actual inlining
new d8b343e Fix doc tests
new 0d5b822 Merge pull request #848 from ahojnnes/warps
new 8ae8548 Avoid temporary array allocations
new e1033e3 Add missing bracket in doc tests
new 914b8cb Re-order input checks
new 50e155e Fix test case
new 4833470 Fix ndim test
new 598ee3f Improve description of match_template
new b815b5d Refactor final slicing
new c1b2d51 Add test for reflected padding
new 33aedfd Add deconvolution module to skimage.
new 17cc228 Rename test to tests
new e25ccf6 Some improvements to new deconvolution code
new 4d1df18 Remove anfft and fftw dependency
new ec123d7 Use assert_allclose for testing.
new beae90b Remove __author__ line and add in CONTRIBUTORS.txt
new b62bd9d Change copyright to scikit-image team
new 2112ec0 Add a small note explaining the wiener filter.
new d2e04fd Add pdf paper
new c942ad5 Inline crandn function.
new 4b23309 Whitespace...
new 7042d77 Fix the bad results of unsupervised deconvolution.
new 11599f7 Typo fix.
new c84a3ba Add test for Richardson Lucy.
new 37ea62d Add the reference image for Richardson Lucy test.
new be7cf29 Fix example.
new e3cdd57 Fix relative uft import for travis-ci pass
new c4e1cf5 You shall not pass !
new debce37 Use skimage.img_as_float for travis-ci test
new 78df3d0 Diminish rtol to 1e-5 for travis-ci
new 997ee1a rtol to 1e-3 for travis-ci.
new def48f1 Rename deconvolution to restoration
new a3b360f Fix test_restoration.py rename.
new 7f910e3 Fix skimage/setup.py
new 66372a2 Typo and doc fixs.
new 2c170ca Fix doctest
new fe684b8 Fix circshift. Rename wiener.py to deconvolution (no API change).
new cb687d1 Small cleanup, keywords changes.
new 43cfff9 PR review.
new 5b29859 Blank line remove
new 6c0c435 Docstring convention about "Input image".
new 8206695 Remove import numpy from docstring doctest
new e67bdd3 PR fixs.
new 29f953d Fix iscomplex to iscomplexobj. Replace circshift with numpy roll.
new 9849d9d Add doctest to uft.
new 0fdb5b2 Change example scaling. Fix ref in doc.
new 587ec48 Better handle of non real case. Some docstring fix.
new 4e2a5a9 Better docstring. Better test coverage.
new b0b0b11 Add tests, coverage improvement.
new bda9b4f Fix travis test
new 15a96d5 Fix python3 test and real values image.
new 44f27e5 Docstring fix. Clip parameter addition.
new cf41cf4 Remove own licence for skimage licence
new e0bb826 Update test file because of the new clip param default to True
new 7b098ce Fix and improve doc string
new a67c5e1 Explicity cast start, step to int in regular_grid
new 4b2136b Make mcp evolution algorithm a bit more readable.
new 8d09300 Improve speed of MPC by about 30%
new f5c675b MCP: turn while loop into for loop to prevent infinite looping.
new d132948 MCP: add sampling attribute: deal with anisotropic data.
new 280fadf MCP: refactored to use typed memoryviews
new 798bea7 update-mcp: Refactor MCP algorithm in prep for MCP subclasses
new 8fe7416 update-mcp: Add MCP_Connect class
new 32c4a80 update-mcp: Add MCP_Flexible subclass.
new f741650 update-mcp: Small fix.
new 9eb878e Remove credit field (and others). Pep8 small fix.
new 7ecd694 Merge pull request #800 from orieux/wiener-deconvolution
new 2ebeee2 update-mcp: Change when examine_neighbors is called.
new fdd880a update-mcp: add new MCP classes to skimage.graph namespace
new 789ade3 update-mcp: added tests for newly added features.
new fc90a16 update-mcp: improvements to docstrings.
new 9113d5a update-mcp: add tests for MCP_Flexible
new 9a280fd Merge pull request #852 from jni/rgrid-int-steps
new 900b35f Merge pull request #844 from odebeir/add_rank_sum
new 0a46f5f Improve doc strings of generic rank filters
new db048d3 Improve doc strings of bilateral rank filters
new f8099fa Improve doc strings of percentile rank filters
new f1839e6 Fix pop_bilateral doc test
new 90ca50d Clarify that it is the local histogram
new 0bf905a Readd note about overflow
new be3752e Use 2 empty lines between functions
new 8db9096 Enforce SLIC superpixels connectivity
new 0d6540a Changed SLIC superpixels so that connectivity is enforced optionally. A separate, private function is created that implements the postprocessing step
new e68ab76 Added max_size as a parameter
new 53a4388 Changed tests to begin segment label at 1 instead of 0
new 08dc3a3 Changed coding style to be compliant with PEP8
new a50b05e Fixing some code, minor revision
new 9178e77 Changed variable names for readbility, fixed PEP8 compliance
new 64d945d fixing tests
new e2724d3 Merge branch 'slic-connectivity' of https://github.com/guillempalou/scikit-image into slic-connectivity
new 4982b00 Labels start at 0, for backward compatibility Code is PEP8 compliant
new 3cb5a19 Update MCP: Put back the traceback() method. I initially changed it to allow faster (flat) tracebacks *during* front evolution, but it turned out not to be necessary. Putting back to minimize the changes of this PR.
new fe94914 Fix typo in docstring
new 6b0c56a Merge pull request #860 from jaidevd/jd_skimeasure_typo
new 14288e1 PEP8 stuff.
new 09f9a92 Merge pull request #854 from almarklein/update-mcp
new 5abc13d Only require Cython if using a developer version
new 7fec88f fix threshold_yen import
new dfa2ba7 fix yen blank image bug
new 2c19784 Add ISODATA threshold with tests
new 08dae8e contrib
new 4d58899 Unit-tests and small fixes
new cd01bad fix tests
new 0079e8d Adding comments
new f461d76 Fixed minor documentation issues
new 0f6cb6f Add note about dtype overflow
new c305a8b Merge pull request #856 from ahojnnes/rank-sum
new bc8c119 Fix input test of template matching
new 71862f1 Merge pull request #843 from tonysyu/refactor/io
new 38525fb Explanation by ahojnnes
new faa4f57 Merge pull request #847 from ahojnnes/template
new 9b2727c Merge pull request #831 from astrofrog/use-cythonize
new f518c2b Merge pull request #859 from radioxoma/threshold
new 0f78de4 Add dynamic creation of imread_collection function
new 8a4c5ce Add comments about how plugins are managed.
new 1910251 Move wrapper function
new 07f2656 Factor out function injection
new 25e349d Remove outdated function
new e0dafcf Clean up test
new 66909ea Merge pull request #862 from tonysyu/refactor/imread_collection
new 15c2989 Added deprecation warning
new 25a3250 Merge pull request #857 from guillempalou/slic-connectivity
new 336f0ca Save feature information in attributes for consistency
new c262ad2 Use public attribute for parameter values
new b3d62af Use public attribute for parameter values
new 0f2076f Add tests for deprecated attributes
new 9963a25 Remove wrong comment location
new c089ddf Fix typo
new fc7b770 Use None as default for estimated params
new c960881 Use consistent params_ attribute across all estimators
new 6307e24 Fix match tests
new a1f7d4e Fix geometric example
new b5792dc Fix BRIEF doc test
new 0bd1d44 Added SLIC-zero to SLIC and changed SLIC implementation slightly
new b4ac252 Bug fix: removed temporary debug code
new 131dea0 Merged the separate loops for SLIC-zero and SLIC into one, and some minor improvements based on feedback on Github.
new 32e3462 Merge pull request #824 from tonysyu/fix/hough-circle-regression
new 0c4addd Some changes based on feedback from discussion on Github.
new 9905ff2 Get rid of trailing underscore for params attribute
new 21a99a3 Document params attribute for each class
new a1052c0 Fix and improve BRIEF example
new 72f2963 Improve ORB example
new 279d892 Improve BRIEF doc string
new c3cf88e Get rid of trailing underscores
new 13c63a9 Fix parameter notation in doc string
new 867b427 Merge pull request #840 from ahojnnes/estimator-params
new 172cbd5 Rename CenSurE to CENSURE
new 5696698 Fix match tests
new b80b9f1 Fix ORB example script
new 31d7eaf Merge pull request #834 from ahojnnes/orb
new 2f01a3b don't optimize pngs in post build processors some derivatives use
new c2c2f08 Merge pull request #2 from juliantaylor/no-png-mangle
new 011409f Add profile_line to measure package
new e24ae38 Use the new profile_line function from `measure`
new 7932db7 Change profile line API to use src and dst points
new 0fd19e5 Update lineprofile plugin to use new API
new ee3ca82 Added a test for slic_zero and some other changes based on feedback from Github.
new a6ba745 rename x-y to col-row to be less ambiguous
new e1d2dcd Merge pull request #864 from romaniukm/slico-rebase
new 1170d87 Update _calc_vert for simplicity
new ecb5057 Return 1D array for single channel images
new 5a12ef6 Allow multichannel images with >3 channels
new 2a6ec20 Fix doctest string and output shape
new ae85e26 Reparameterize profile_line to avoid the _calc_vert hack
new 47f6ddb Update interactive lineprofile tool to new API
new 3d93582 Simplify parameters even more
new 80dcc0c Add 'order' kwarg for interpolation in profile_line()
new 00f4d38 Polish coordinate system
new 4bc5d66 Add numerous (14) tests for profile_line()
new d71cd4d Remove unnecessary if clause
new 040a21a Change default interpolation order to 1
new ec0079d Output line drawing and scan data from plugin
new 5d9115a Replace Cython's round with a VC2010 compatible version
new 305ef0d Merge pull request #870 from stefanv/bugs/windows-round
new 01967e5 Update docstring according to @stefanv's comments
new 73bf701 Merge pull request #865 from jni/profile-line
new add4b51 QH6228 Bug fix - remove offset from coords
new 920c3ef Added new convex_hull_image qhull test
new 0136fd5 Removed trailing whitespaces
new ef779d1 Fixed PEP8 spaces
new b45e8c9 Merge pull request #873 from jmetz/convex_hull_image_qhull_precision_fix
new a1127d4 Add shaded polygon to lineprofile output
new 2893fba Refactor perp_lines behavior
new 07f64b4 Add test for LineProfiler tool
new c2fd471 Fix aliasing and update docstring
new 8a26124 Update test now that aliasing has been removed
new 864a189 Use division consistently between PY2 and PY3
new df4746d Update test to use floating point images and with updated values
new 85537e3 Update the paint tool shape with the viewer image changes
new c70040c Add a shape property that gracefully accomodates a new image size
new fe2edd5 FEAT: Add function to correct mesh face orientations
new 3d3aba1 Add correct_mesh_orientation to skimage.measure imports
new f2b1304 DOC: correct misspelling in comment
new 15a3306 Merge pull request #875 from blink1073/lineprofile-overlay
new c930133 Use frombytes instead of fromstring on PIL images, since the latter is now deprecated
new cb04bd6 Add '--all' flag to placify newer versions of git
new b71008a Fix Image.frombytes for older version of Python/PIL
new 68ab593 Merge pull request #886 from stefanv/bug/pil-fromstring_to_bytes
new 7a77c12 Only run coverage for Python 3.
new 4c80d31 Exit with status zero under Python 2
new ddf06f1 Travis-ci doesn't like 'if-else'?
new 50a2708 Correcting the strides of response in _filter_image
new 292f9dc Fix regionprops doc typo
new 750911f Merge pull request #881 from blink1073/fix-labelpainter-609
new d8589f0 Adding test to check Censure works on any 2D shape
new 6d7c823 Merge pull request #846 from stefanv/coverage-oneversiononly
new f6b1c01 Merge pull request #888 from ankit-maverick/issue885
new d1b0434 DOC: remove deprecated paramter
new 4739635 Merge pull request #887 from stefanv/docs/gh-pages
new 3b9f330 Implement missing max_distance parameter
new e176b9d DOC: viewer: some corrections
new 4f51059 MAINT: populate __init__.py
new 308c5c7 Add viewer to main docstring.
new 3931f18 Add py3k compatibility for core widget and overlayplugin.
new cc2820b Merge pull request #891 from sciunto/tuto2
new 44dc93d Use the more idiomatic list().
new ba58dc8 Merge pull request #894 from blink1073/viewer_docstring
new 572720d Merge pull request #895 from blink1073/fix-canny-py3k
new 2961680 Merge pull request #889 from sciunto/tuto
new 7b104fd Add string inputs for range parameters of `rescale_intensity`
new 181d030 Remove six copy in _shared as it is a required dependency
new 8f3b3b3 Merge pull request #896 from ahojnnes/shared-six
new 28d6787 Add tests for uint12 and uint14 limits
new d652a9c Merge pull request #897 from tonysyu/named-rescale_intensity-params
new 5f07039 added blob_dog
new 6b0b9db doctest
new d9adb82 added test_blob
new c5a6f67 doc string
new 66bd0c4 typo
new 59fa47c threshold
new 5a988fd Changed formula, this improves detected size accuracy
new e449ce9 Made get_local_maxima_3d public It also takes connectivity as a paramater now
new 7681598 changed params and functionality of get_local_maxima
new 579c3d5 added get_local_maxima to feature
new d6910ba removed get_local_maxima, now using peak_local_max
new 7986714 rectified __all__
new 0f44e6f added names in CONTRIBUTIRS.txt
new ddfb17d Merge pull request #903 from vighneshbirodkar/dog
new c815bd6 Fix peak_local_max doc string
new 438784c Add test case for 3D images
new cd13361 Add test case for 4D images
new 941a252 Merge pull request #906 from ahojnnes/peak-fix
new a067485 added blob_log
new 47c5f1b added test_blob_log
new a2438b6 comments
new 2a93070 Fix ValueError: Buffer dtype mismatch, expected 'Py_ssize_t' but got 'long' on win-amd64
new a3067c5 Define M_PI (not part of C89)
new 44f26ce Define M_PI (not part of C89)
new f4b260c Merge pull request #907 from cgohlke/patch-1
new 5347211 Fix test_novice.test_update_on_save failure on Windows
new 5403e7a Use os.pathsep to sepatate multiple ImageCollection load_pattern
new 81805a5 Skip viewer tests if no Qt API is available
new b06d160 Fix TypeError: __class__ assignment: 'TestFlexibleMCP' object layout differs from 'UnboundSelf'
new e6fc720 BUG: wrong search for pivot in `quicker_sort`
new 1db0c14 Merge pull request #913 from jaimefrio/quicker-sort
new 6efb05f Merge pull request #911 from cgohlke/patch-5
new 649a87f Merge pull request #910 from cgohlke/patch-4
new bfd693c Merge pull request #908 from cgohlke/patch-2
new a12bc45 Merge pull request #909 from cgohlke/patch-3
new 41eff63 Merge pull request #912 from cgohlke/patch-6
new 4addbd7 Merge pull request #890 from ahojnnes/matching
new 9557c8d added a functionality to fetch images from URL in _novice.py
new 1fd34b4 added description and exmaple for new functionality of fetching images of url
new 806a52e migrated from area to sigma
new 815b022 removed print
new 6e6b27b doc changes
new 5255b29 doc rectify
new 654642c changed test url in example for the Picture(object)
new 15893a3 changed the method of checking if a string is URL 1. removed regex code which was used earlier to check if a string is url. (regex code taken from django) 2. Now checking if a string starts with http(s) or ftp(s).
new 2f3bd46 added a dummy useragent in Picture class while fetching image using URL.
new 70ca149 changed urlparse library from six.moves.urllib_parse to six.moves.urllib.parse
new dc85186 corrected syntax for error handling while fetching image from a URL in class Picture
new 7880453 changed the method of fetching images in Picture class using file_or_url_context to get context and calling imread and imghdr on returned context
new 0bfdda5 removed unnecessary imports from _novice.py
new c923587 typo
new 4992f8b Make doc/gh-pages executable
new 1d133e5 made minor changes in syntax 1. merged is_url and file_or_url_context in one import statement 2. changed syntax to check if path is a URL. now more compact
new d4cb154 improve performance of equalize example
new c60d15f Merge pull request #922 from juliantaylor/doc-improve
new b6e7fc8 Fix warp doctest and example
new f280e0b Fix regular grid doctest
new ece0f30 Always Skip doctests which depend on Qt and are in the class doc string
new 1f5ec3e Improve function name in warp example
new 107f1d6 Move phase unwrapping algorithms to restoration submodule
new ef63523 Move denoise functions to restoration submodule
new eedc72d Fix restoration example imports
new e9ac84b TST: Add unit test for mesh orientation correction.
new 48ca44b FIX: Slight speed decrease for backwards compatibility
new 6b8a198 Merge pull request #915 from vighneshbirodkar/blob_det
new fb72fb0 used plt.subplots everywhere
new 13b48ff Update bento
new 8aea87a Merge pull request #923 from ahojnnes/doctests
new da603f6 changed colorbars
new 2df1af8 Merge pull request #916 from neerajgangwar/master
new ec61561 changed to fig.colorbar
new f4bef8d changed to plt.subplots()
new c2e380c fixed plot in plot_glcm.py
new 2cb4f65 made plot loop more readable
new 9e0e9c0 changed to plt.subplots
new 349d091 changed to fig.subplots_adjust()
new 37f39f7 changed to fig.subplots_adjust()
new 8a6764a changed to fig.subplots_adjust()
new 686400b changed to fig.subplots_adjust()
new febb4f0 changed to fig.subplots_adjust()
new 5ac910b FIX: correct other instance of np.linalg.norm, clarify comments
new 697910c Add denoise deprecation removal to TODO.txt
new 9501c2d Merge pull request #924 from ahojnnes/restoration
new 944c9c6 Merge pull request #882 from JDWarner/correct_mesh_orientation
new 92b9ebc MAINT: remove 2 weird lines
new f3a1a9e corrected the formula to calculate the location of offset pixel in _texture.pyx
new 8b8995f Merge pull request #932 from sciunto/weird
new 217b0aa MAINT: remove blank lines
new cf7a184 TEST: add test on step
new ced3f56 DOC: specify range for step
new ee12ccf TEST: add unittest about ValueError
new a423bd1 MAINT: use asset_allclose instead of round
new c6e916d remove extra )
new 67b1335 remove '' around ValueError
new 6093c55 MIN: typo
new 3102dca Merge pull request #934 from sciunto/coverage2
new 5b3aa56 Adds functionality to generate ipython notebooks for the gallery examples
new 452fcda DOC: typo
new 11725c9 PEP8
new b3f0c1e FIX bug #832 + testcase
new aaa2257 Merge pull request #937 from sciunto/doc
new 4c1b650 MAINT: python3 compat.
new 85bbd0c Merge pull request #938 from sciunto/draw
new dfea80c Merge pull request #939 from sciunto/py3
new 7a164d2 minor changes in syntax in _glcm_loop method. Using round in place of floor in _texture.pyx to calculate the pixel offset.
new 8321c84 Merged with master
new c244951 Merge branch 'master' of https://github.com/scikit-image/scikit-image
new 5db5b18 Merge pull request #935 from neerajgangwar/fix-greycomatrix
new a047fdc Fixes for making code more pythonic, follow conventions
new a89dd4d changed f to fig
new 6a8f5fe changed f to fig in applications
new f871c40 Extract changes by @synesthesiam in PR #797
new 5589759 Upgrade numpydoc to version 0.4
new 42417de Merge branch 'master' of https://github.com/scikit-image/scikit-image
new aa8cc0a Merged with ahojnnes novice
new 397177e Remove debug print in contribs
new c31f919 Merge pull request #947 from stefanv/build/contribs
new b54b41b Use nearest neighbor interpolation and a gray-level color map for plotting feature matches
new b7ae413 Merge pull request #948 from stefanv/bug/plot_matches-cmap-interp
new f792b11 Merge branch 'master' of https://github.com/scikit-image/scikit-image
new 5d82abd changed io to ax
new afb1510 added testcases for greycomatrix for angles pi/4 and 3*pi/4
new 12ba590 overrided __eq__ method of region props
new a748df0 removed blankline
new 77b91e6 added tests, accounted for nan case
new ace11b8 added nan case
new ab06d01 pep8
new dd8a14b reverted irrelevant changes:
new b0dbfff reverted irrelevant changes
new 1fc2429 reverted irrelevant changes
new 3f5b389 reverted irrelevant changes
new 4b714c5 MAINT: use region.bbox
new ea70724 MAINT: use region.area
new 9e028ae Merge pull request #957 from sciunto/fixdoc
new dc798e2 Merge branch 'master' of https://github.com/scikit-image/scikit-image
new f84cce3 Convert incoming novice images to ubyte
new e812a8f Merge pull request #946 from synesthesiam/master
new 5593bad Merge pull request #958 from ahojnnes/numpydoc
new 06498c3 Warn about matplotlib backend in skimage.viewer
new 55b0b0b Merge pull request #959 from ahojnnes/viewer-backend
new efcd815 Merge pull request #926 from sivapvarma/plt-subplots-examples
new 0545845 DOC: simplify the code (Thx Stefan)
new 9772cf3 Merge pull request #960 from sciunto/doc_enhan
new 726ba6d Temporarily remove video plugin
new 764c596 removed array cast, added not equals test
new 40cc93a Add example of tinting a grayscale image
new 65dbff7 Update subpackage descriptions
new 9e3070a Homogenize subpackage description
new a881d2f Incorporate PR feedback
new 040890f Fix a couple of grammar typos
new 5b5ef4d Merge pull request #963 from tonysyu/feature/tinting-example
new 82189f5 Merge pull request #964 from ahojnnes/submods
new e92c2bf Document removed skimage.io.video in API changes
new e6ea9ef formatting, used assert_equals in test
new 1decf8a Merge pull request #956 from vighneshbirodkar/issue945
new a21dca6 Merge pull request #961 from ahojnnes/video
new 1a909cb Fix LBP variance calculation.
new 1fbed8a Fix random seed for test stability.
new 109efc5 No need to take the center of the results twice.
new ba11683 update info about PIL
new e64547b forgot a aword
new a440087 Merge pull request #968 from sciunto/req
new 5e07dba Merge pull request #967 from pberkes/fix/lbp-variance
new 2c5d19f Merge pull request #955 from neerajgangwar/add-test-greycomatrix
new e25e11d Fix parameter documentation in corner_peaks (closes #901)
new 5733a02 Do not allow view_as_* to return copies (closes #866)
new 27bd239 Merge pull request #970 from stefanv/doc/peak_local_max
new 12af2ef Take a softer approach and raise a warning when a non-contiguous input is provided
new c18d4bb Update view_as_windows docstring
new 14773e3 Print warnings while testing
new 717f5fe Fix typo in docstring
new f456245 added cython file
new 448c411 made methods private
new 2781d30 doc strings
new d58cab1 pep8 cython file
new cca0c74 added python call and doc strings
new a4029c0 removed print
new 2e441b2 tests and minor corrections
new 507a215 notes change
new 3cf6bff bento change
new d5f9ebf minor doc changes
new 630136a added full paper desc.
new fbf40b0 corrections to cython file, switched dtype to double
new 1b2ca11 doc test
new a15c5fa indexing
new 61a8a78 made hessian_det_appx public
new e818a42 moved public interface of hessian determinant to corner.py
new 7a4401e doc string change
new 9510c03 Remove deprecated `ratio` keyword in SLIC
new dcd822b Remove deprecated sigma default warning in SLIC
new 39d6360 Remove SLIC deprecations for 0.10 from TODO.txt
new 68a5333 Remove 'ratio' kwarg from SLIC example
new fdc2b8d Remove is_gray and is_rgb
new 82e6135 Remove finished entry from TODO.txt
new 9cf5eeb Merge pull request #975 from jni/isrgb-depr
new d4ba604 Merge pull request #974 from jni/slic-depr
new 45beadc Remove all deprecated rank filter functions
new f2cbb0d Remove removing deprecated rank functions in to-do
new 2091dbf Remove deprecated parameter in LineProfile
new 193717c Remove another finished line from todo
new 0af070b Change default mode cascade in random_walker seg
new 264ca6e Remove deprecated depth parameter in random_walker
new 18ce9d2 Remove `depth` from random_walker tests
new 5963f5d Remove deprecated bullet point about deprecations
new a66f2a0 extra line and spelling mistake
new c0625f8 Distinguish between executable Python and Python version for apt-get
new a4a939e improved test coverage
new da36df0 added Notebook class for creating IPython notebooks, better name for main object variable
new 3ceac72 Merge pull request #972 from stefanv/test/travis_warnings
new 213390d Remove deprecated function from applications
new 3f51876 Fix `plot_segmentations` example text for SLIC
new 69f5e9d Update viewer example to use plugin outputs
new 9ef9045 Update lineprofile examples to use returned output
new 17541e2 Update plugin class doc example to use output
new db795bc fixes use of camel case
new a6f396b added newline at end of file
new 88358f6 Merge pull request #978 from jni/more-deprecations
new 235a9b3 moves everything related to generating the IPython notebook, to a different file
new 694739e updated import statement for creating ipython notebooks, better name in place for jsonify
new 5658704 changed parameter of hessian_matrix_det
new 848a0f5 removed whitespaces
new 65adb79 adds documentation
new 5180da5 removes redundant passing of an extra parameter
new 4d11868 removed blanklines in doc strings
new 0c13cce Merge pull request #930 from vighneshbirodkar/doh
new 3d50a03 Remove deprecated skimage.exposure.exposure
new cedcff8 Remove deprecated skimage.morphology.greyscale_*
new 44f3e1b Remove deprecated skimage.segmentation.visualize_boundaries
new d90b30c Remove legacy todo item for BRIEF, which has been addressed
new ed558d6 Remove deprecated skimage.filter.median_filter
new b08a126 Remove deprecated logger function in skimage/__init__.py
new 6a0d81a Remove backwards-compatability of skimage.measure.regionprops
new e9f690d Use new regionprops interface in hough_line_peaks
new 691dc07 Use new equalize_hist function in rank filter example
new 1a14768 Fix deprecation warnings in matching example
new 8e95ea0 Fix deprecation warnings
new 9e1cc80 Update rank filter example
new 739dca0 Fix novice doc test
new 46b2bd5 Remove print statement
new 4c68b48 Merge pull request #977 from ahojnnes/todo-0.10
new 1e34359 Fix PEP8
new 0c9ee09 Fix camel case, more descriptive function name
new a53f880 Fix typo, better function name and docstring summary
new 07970bd Fix PEP8, line lengths for comments
new 62a9137 Add __all__ to specify modules which should be imported
new fcc607f Add default value for adding cell, better naming for type of value
new 6c0a570 Remove sample.ipynb, template now inline
new c9a9814 Add and improve docstrings, JSON dumping and duplicate removal generalised
new a57cf0d Improve docstring for add_cell
new 9cbea5f Fix to incorporate a more generalised duplicate removal and JSON dump to string
new 697e8e6 Fix coverage config specification in nosetests invocation
new 7800ecf add step 4: review
new e3303db Use coveralls instead of python-coveralls
new 29b1ce6 Improve docstring for consecutive duplicate removal, more readable
new 2022446 Remove extra spaces
new 3ddd5ce Remove fetch_key, an overkill
new ddf8969 Add string options to the docstring
new e104c68 More pythonic
new 468860a Add class to __all__, remove duplicates now private
new 34ec43e Merge pull request #973 from stefanv/coveralls_other
new f675539 Remove segment_number, directly change the last cell
new 8edc605 Fix PEP8, more readable
new c089c62 More generic Notebook class
new bc7f3d6 More pythonic if statements
new e79c1ba Add warning, consistent use of quotes, correction in docs
new dbf9f0b Remove use of redundant variables, cleanup
new 7b1ec0a Rename _remove_consecutive_duplicates to _squash_repeats
new a9107bb Update Notebook docstring
new bbd7817 Add unit tests
new c597fa4 Add tests for notebook. Remove python_to_notebook utility function.
new 5dc647c Update plot2rst to generate notebooks
new 6fabd4d Merge pull request #1 from stefanv/ipython-notebookcreation
new eacd19a Merge pull request #936 from sharky93/ipython-notebookcreation
new 0b7b225 Modify 'integral_image' to support nD
new bd442bd Make the nD integral_image backward compatible
new 083212b Changed integral_image parameters to new format
new fa72921 Updated test_integral to support new format of parameters
new ed57d4e Corrected documentation/indentation, changed vstacking
new 2909f6d Corrected Python3 slice indexing error
new 7161175 DOC: Clarify UMFPACK warning; use if statements instead of assert
new 7847287 FIX: Shortcut output or catch trivial cases in random_walker
new 88f08eb TST: Add unit test for length-2 spacing with rank-2 input
new de38fa2 Stefan's comments
new 40f3813 Add Juan's comments
new 16d6e56 Make another pass through contributing guidelines
new 95ccc23 Merge pull request #3 from stefanv/contributing
new 715c074 fix typo
new db3d04d Merge pull request #982 from sciunto/contributing
new f2699bd Update Canny examples
new 9ecbc6e Use Astropy by default if possible
new 32d6fc3 Added entry for Astropy in DEPENDS.txt
new 7a1213a Merge pull request #830 from astrofrog/use-astropy
new 132aa8b Add all_warnings context manager
new 337f3d1 Update shape tests to use all_warnings
new 8fdd5a2 In all_warnings context manager, return warnings for examination
new 86beb21 Move all_warnings to skimage._shared.utils
new 58ef146 Copy list of modules since it may change during iteration
new d76aad9 Added Hubble Deep Field image.
new 57bd84e Added example and pep8 changes.
new d03fdb8 Corrected spellings.
new e925d13 Grammar corrections.
new 0c1c62b Grammar corrections.
new b6224d0 Changed travis.yml to install pillow.
new 0b4ad42 pip command correction.
new f1a8e6b Tab to spaces.
new 7738e65 hubble_deep_filed doc string changes.
new 336f117 Changed example to make code compact.
new a82d814 Changed example and hubble_deep_field doc string
new 5b459a8 autopep8 changes.
new 580f5d2 Corrected comment in example.
new cc76e8a Added method reference to example.
new 321d9f3 Add some PEP8
new 7688e57 Merge pull request #971 from stefanv/bug/views_are_copies
new 0219849 Fix broken link to origin apigen source
new 79e22ae Merge pull request #991 from stefanv/apigen_origin_license
new 5e4bce3 Merge pull request #986 from vighneshbirodkar/blob_example
new 9142c51 Replace broken _import_tools from numpy with Git version
new b03d59f Print versions of software used in Travis output
new c666b0f Remove deprecated --use-mirrors from pip calls
new 1a02287 Rename heading -> header
new 10459fe Don't fail if .matplotlib dir already exists
new dbb06dc Merge pull request #997 from stefanv/build/travis_numpy_py3
new f4f509f Fix cython compilation warnings
new 5c2d8eb Fix custom six issue in scipy 0.14 on python 3.4
new 05f1f00 Merge pull request #998 from ahojnnes/python34
new 00b4fa4 Always interpret provided shapes as int. Add a note on using output_shape for color images.
new 4c7cd9b Add unit test to catch non-integer output shape bug
new 0ac86b3 STY: More elegant and maintainable style per code review
new e9c793e FEAT: Shared function for safe int casting
new 0d775c3 Remove check for non-numeric values in spacing.
new fbda639 Merge pull request #984 from JDWarner/randwalk_trivialcheck
new 07d3e6e Convert name to _safe_as_int, output np.int64, expand Examples
new 4aa162f FIX: Remove unnecessary .transpose introduced in PR #984
new d142748 Merge pull request #1001 from JDWarner/rw_transpose
new b8334e8 failUnless -> assertTrue
new 069cba5 FIX: Address non-int DeprecationWarning from NumPy
new 1ca0eef FIX: Non-integer indexing deprecation warnings
new 548423b Update variable name for RGB line profile
new 040a3bf Merge pull request #1002 from JDWarner/asserttrue
new 3d2af71 Update description of viewer output in docs
new 2679306 Fix documentation, handle internal variable more efficiently.
new 53de0db Very minor text change
new 0b6e48f Clarify regionprops output
new 35cfe6a Merge pull request #1006 from stefanv/doc/regionprop_out
new 82b404a Merge pull request #1004 from jni/viewer-examples
new 7152d5c Move label to measure module (with deprecation). Warn that background parameter will default to 0 in v0.12.
new b68b14f Merge pull request #8 from JDWarner/safe_int_casting
new 46829c6 Move implementation of label to measure submodule
new 5ba3ea4 Fix imports and suppress deprecation warnings
new a9dcdc3 Use safe_as_int to check provided output shape
new 898f0d7 Update bento build
new e9c0cde Move safe_as_int into utils
new a4d97f2 Merge pull request #992 from stefanv/warp_safe_output_shape
new 3fab7c0 Remove incorrect np.round statement (directly cast `m`)
new 1de102a Fix broken and circular imports
new 375e406 Use safe_as_int for input checking.
new 77b036e Merge branch 'master' of git://github.com/scikit-image/scikit-image into int_idx_patch
new 837406c Merge pull request #1003 from JDWarner/join_dep_warning
new 4da4ec5 Mention which parameters to label are optional. Simplify label deprecation.
new 8bcdfb8 Remove unnecessary double import.
new 8663e23 FIX: Use //= instead of /= to fix deprecation warnings in adapthist
new 69a0255 Test invalid input for seed
new e4a60e4 Test invalid input for selem
new 7b86728 Add full test coverage for corner_subpix and fix bug
new c3e13a9 Test union of differing geometric transforms
new 02e6ad6 Test 90deg rotation for similarity transform
new ac1b10d Fix docstring of skimage.filter.rank.threshold_percentile
new e8ab555 Test invalid input for unwrap_phase
new 7ec58dc Comment special case when local patch around is constant
new da2ddb6 Improve description of subpixel corner localization
new aff717f Merge pull request #1008 from ahojnnes/coverage
new 5b07567 Merge pull request #1005 from JDWarner/int_idx_patch
new a2d2a73 Change EPD link to Enthought Canopy
new 98c426d Merge pull request #1014 from tonysyu/update-EPD-link
new b7c42ac Check input for Iterables instead of numeric types, PEP8,indentation,added comments
new 37572bd Corrected doctest output
new adbc2ef Fix copy/paste error in docstring.
new e50d1b8 Merge pull request #1015 from maxalbert/master
new c57d7f2 Corrected grammatical mistakes in documentation
new eb4923c Removed extra Tab character
new 135965f Avoid circular imports
new c0be2ec Correctly apply catch_warnings()
new 6546b9d Merge pull request #1007 from stefanv/label_refactor
new e182931 Move label to measure module (with deprecation). Warn that background parameter will default to 0 in v0.12.
new d256b6f Move implementation of label to measure submodule
new b421d71 Fix imports and suppress deprecation warnings
new 3f7b8aa Update bento build
new 0d1cc0f Fix broken and circular imports
new a9ba1fe Mention which parameters to label are optional. Simplify label deprecation.
new dc0e36e Avoid circular imports
new ec15ec4 Correctly apply catch_warnings()
new da139f1 Move removal of deprated functionality by one version
new ccc8379 Set version 0.10
new 84503bb Add 0.10 to docs
new e120f9c Change to http git protocol
new c5919ae Update release instructions for building docs
new a069564 Move removal of deprated functionality by one version
new 24be78e Set version 0.10
new a421953 Add 0.10 to docs
new 2171f94 Change to http git protocol
new ea6c9b2 Update release instructions for building docs
new fb4729d Fix gh-pages build script
new c026b21 Increase version to 0.11dev
new 7d50cb7 Remove deprecated release instruction
new 9b0b9c1 Count number of commits
new 8fcbc76 Fix markup in DEPENDS
new 108b916 Merge pull request #1016 from stefanv/doc/depends
new ba55d32 Update MANIFEST to include all test data
new 3814df2 Merge pull request #1019 from stefanv/build/extra_files
new 55ce193 Update MANIFEST to include all test data
new 280d44f Fix markup in DEPENDS
new 6032938 Add release notes for 0.10
new 8cba840 Clarify `mask` argument in `medial_axis` docstring
new 34cf1f9 Update parameter list in docstring for consistency
new 9fd8bb0 Merge pull request #1022 from jni/medial_axis
new d12833f Merge tag 'v0.9.0' into releases
new f855ee1 Merge tag 'v0.9.1' into releases
new 7c96927 Merge tag 'v0.9.2' into releases
new 0ffbf00 Merge tag 'v0.9.3' into releases
new 5ec9937 Merge tag 'v0.10.0' into releases
new 660751f Merge commit '0ffbf00db5f7815988061d8e1c1d7d71b7b8e356' into debian
new e2b410a Merge branch 'releases' into debian
new d3b48a6 changelog entry for the new release
new cccbe89 adding closes for the fresh revision bug report
new 9446f6b Use more recent NoNorm API
new dead861 Correctly compare mask to None
new 56f66fb Ignore auto-generated notebooks in Git
new 39bf45a Fix median filter example
new c70a1c7 Merge pull request #1026 from stefanv/bugs/watershed_none_comparison
new 5ccbb1f Merge pull request #1025 from stefanv/compat/painttool_mpl_NoNorm
new f054f31 Merge pull request #1027 from stefanv/maint/ignore_generated_notebooks
new fea4c17 Merge pull request #1028 from stefanv/viewer/median_filter
new 00009fe Use same order as matplotlib for PySize/PyQT
new df7a7ee Merge pull request #1024 from stefanv/bugs/qt_pyside_matplotlib_compat
new 1eae917 Update label2rgb doc
new a1fd895 Split label2rgb into two related functions
new 9b110d6 Tweak range definition in `rescale_intensity`
new 423207e Make `intensity_range` a public function
new ec9198c Edit wording of docstrings
new 8e539cc Clarify docstrings
new b066a14 Clarify docstrings
new 4c0befe Add TODO for deprecation removal
new 7cc40dd Add background label handling for label2rgb_avg
new d72163a Add docstring for _label2rgb_avg
new b70d423 Add default values for background in _label2rgb_avg
new b494e36 Add docstring for _label2rgb_overlay
new fdc848b Add tests for label2rgb avg mode
new 57b9e67 Merge pull request #1033 from jni/label_image
new 21c80d2 Test negative intensities
new b85fb74 Merge pull request #1034 from ahojnnes/label-coverage
new 2b10d98 Added mean color RAG construction code
new 53077c9 Added edge threshold cut
new a6c9a5a Renamed graph.py to rag.py
new abcb9cf Added testcase
new 10f91fe Added docs
new 850f835 Docs formatting
new 1ad8ad7 Added examples in docstring
new 3ea7809 Formatting changes
new c08d96d Minor Foramtting
new 18a6535 Corrected test mistake
new bf89726 removed comments
new 47e3b6e Added example
new 602c8d8 Added explanation to example
new 076b044 Added bento.info
new dfee068 Added networkx to requirements
new 5165ebe Added networkx installation
new 53318c4 CHanges to get Python3 working
new 2a7ec3a Renamed _construct.pyx to _build_rag.pyx and some code corrections
new f5f93f8 Removed cython file and added nd python function for RAG construction
new 9b8e133 Corrected rag import
new 78397bf reverted benfo.info and setup.py
new 5333049 Added references
new 410aecb type casting to double instead of long
new 8a36040 rebased and used color.label2rgb
new 20cefcf Added comments and switched try with if
new d0e7a26 Added RAG merge_nodes test case
new 76d3dba added merge_nodes test
new 711de46 Formatting changes
new 0e35c42 Graph can now merge non adjacent nodes
new 319530f Used mapping in graph_cut.py
new 3db0a2f Naming changes and formatting
new 0efca40 Added connectivity parameter and a function input to merge_nodes
new a1bc2e9 Made test Python3 compatible
new c14021a Formatting and typos
new 66d3ec3 removed commented stataments
new 27831d8 Formatting and docstring changes
new bd9ab8f Switch label_image to labels
new b1f59fc Changed prototype of weight_func
new cbfa8aa docstring corrections
new b1284ee update test for py3
new bb87407 None comparison
new f481724 Added RAG merge example
new c08a687 Added comment about footprint
new b9a7445 [skimg.io._plugins.freeimage_plugin] fix segfault
new c8480d3 Change merge_nodes code and test case
new 1982a32 Docstring changes.
new e63ae94 merge_nodes docstring change
new 87465d9 test_rag.py formatting
new 992a12f Only import numpy after dependency check
new 79d698e add user guide parallelization
new f71ad51 Got Py3 test to pass
new dd67b3f Changed max_edge in example/plot_rag.py
new 6abf194 Use sets instead of dictionaries in merge_nodes
new d69cdb9 [freeimage tests] Add a test w/ truncated image
new 7d9f9c4 [test_freeimage.py] remove extraneous statements
new 83d0717 [test_freeimage] Allow ValueError to be raised
new 4160a67 [skimage.io.tests] add truncated jpg imread tests
new df706be Merge pull request #1039 from kdmurray91/fix_freeimage_segfault
new d72a6cf Release v0.10.1
new 600e3fd Merge pull request #1042 from stefanv/setup_numpy_dependence
new 486f935 Rename methods and edit docstrings
new 99a45ba Changes to plot_rag.py
new 6003ab2 Typos
new 8e5c5d6 Add OSX wheel generation instructions and upload script
new 6926b6f Update wheel URL
new 9002eeb Get tags from current repo
new b6c8ee9 Indicate waiting time before wheels become available
new 0fca535 Remember to update stable docs link. Check timestamp on wheels before posting.
new c1cf8e6 Got doctest to pass and docstring changes
new e558854 docstring change
new a4bf278 Doctest Passing
new fb706d1 made RAG public and hyperlinked networkx.Graph documentation
new 351e769 Docstring change
new df1d61e Spelling correction.
new 6887f2c Merge pull request #1031 from vighneshbirodkar/rag
new 7a074d5 BUG: Fix slicing error revealed by numpy 1.9.0.
new 1c27a97 Merge pull request #1052 from charris/numpy-1.9.0-fix
new 5ef3f95 Add random seeds to tests per #1044
new 35dcdd5 Move random seed prior to first random() call
new bb732c9 Add default structuring element to morphology
new 54aff88 Add docstring for default structuring element
new 879c2c7 Add tests for intensity_range and rename parameter
new 1ef556b Remove unnecessary whitespace
new 4c000c4 Use normal deprecation warning
new 9cd9a13 Address reviewer comments
new 7c53880 Add gitignore for *.pyd Windows libraries
new f587b53 Merge pull request #1059 from nlsn/exclude-win-libs
new 2c9d22c Merge pull request #1032 from tonysyu/better-rescale-intensity
new c2bbca6 Add a newline at EOF
new 3518e65 Add newline at EOF of selem.py
new 9cd276f Merge pull request #1058 from nlsn/default-selem
new 2b91c25 Add fallback decorator for 3D images
new ea3e65f Add 3d-fallback tests for binary functions
new 1962059 Set the unused portion of the image to 0
new 61fb831 Implement a mode enum
new 9fa39e5 Update docstring
new 9f7119b Change 'trim' to 'crop'
new 95a208e Add test for adapthist modes
new 909f23b Switch to HSV, refactor equalize_adapthist, fix #757, cleanup docstring
new ba010a3 Update adapthist tests, add test for alpha channel and rgb mode handling.
new 2bdfcc7 Fix failing tests and turn module level testing back ony
new cc68b0c Start removing optional edge pixel handling
new 5cafbd9 Add tests for intensity_range and rename parameter
new a924e55 Fix handling of border pixels and update tests
new 0392299 Refactor to use np.pad, naming changes, update test.
new 70a3760 Remove unused deprecation import.
new f1a8132 Add doctrings and comments in response to reviewers
new d9909c4 Add tests for ndimage fallback for 3D white_tophat & black_tophat
new 042d85a Adjust hanging indentation whitespace in dict comprehension
new b677c40 Add whitespace following comma
new a1519a0 Change binary morphology functions to output numpy.bool dtype
new 21364e8 Fixed threshold in example
new f262a71 Document NetworkX dependency in DEPENDS.txt
new 001a63b Remove repeated comments
new 8c2b9b1 Updated docstrings
new 7976520 Add test that the 2D results correspond to scipy's Remove trailing whitespace
new 4449c77 Fix calls to ndimage to use footprint argument
new 9e88757 Merge pull request #1069 from jni/nx-depends
new 74988b8 Merge pull request #1068 from vighneshbirodkar/rag_fix
new 7cf80e6 Merge pull request #893 from blink1073/fix-adapthist-757
new 94bbb58 Minor cleanup of adapthist module
new 736de2c Rename module to be more explicit
new 9576df4 Add tests for all of viewer subpackage, with necessary file mods
new 1a01f1a Fix failing tests
new 0b73d69 Address travis failures
new 97d920c Another travis fix
new 938955c Merge pull request #1071 from blink1073/cleanup-adapthist
new eb47258 Change test of ndimage equivalence to use uint8 test image
new 6e8ae37 Change ndimage test image to fit uint8 range
new c24adec Add `adapt_rgb` decorator and helpers.
new d9a39d4 Remove cast and rescale and adjust test values to match
new 34d7fdb Fix docstring for wrapped functions
new a2e2895 Merge pull request #1063 from nlsn/3d-fallback
new acbac35 Skip tests if matplotlib is not present
new 243d550 Make skip condition cleaner
new ee3b9f2 Remove orphaned import
new 0c31487 Merge pull request #1072 from blink1073/add-viewer-tests
new 6aa0b9e Merge pull request #1073 from tonysyu/feature/adapt_rgb
new 2a1f368 Remove endpoints from theta
new 5677daf Move away from random.random in favor of random.rand
new caaf75e Fix failing doctests
new 85a5cea Merge pull request #1054 from blink1073/add_test_seeds
new 7d14f5c setup
new 278a0d6 Bug fix: nbins can be >256 in threshold_isodata
new 838617c Fix incorrect test function signature
new 0801f92 Merge pull request #1086 from jni/thresh-iso
new b6dcf3c Update Travis build to use Anaconda. Update Travis build to use Anaconda
new e3b84ed Fix python 2.6 restoration/unwrap error
new 208afc3 Move version_requirements to _shared and remove skipif from require.
new f2b7e10 Add documentation and rename import variable
new 26a550a Formatting fix.
new 382be1a Formatting and docstring cleanup.
new 04e53f1 Remove confusing dummy variable
new 56152fe Update comment
new 2a339fe Improve import behavior for rag fallback
new 480a9f7 Add note in travis
new 5996cf8 Add travis_retry around the conda installs
new c0f3697 Merge pull request #1084 from blink1073/miniconda-travis
new e74ba1b Add release note instructions
new c3b4e58 Describe new release note dev process
new 4235e8a Add release notes for upcoming versions
new 5d4ec15 Remove contributors for current release notes
new be3ac9a Rename Changes section to API changes
new 8ef53d0 Add intro to release notes
new c3b79ca Add release notes template
new ee3797f Merge pull request #1023 from ahojnnes/release
new 017d051 Clarify release procedure doc
new 00456f9 Merge pull request #1093 from tonysyu/clarify-release-procedure
new b03683d pil_plugin can import and export from memory
new 1dcb60f added tests for roundtrip export and import
new 32061fb added a space character to trigger travis build
new 4a0b99a fixed bad indent
new 1cb73c7 improved name of pil import/export functions
new 7215936 First working copy
new ddf11bd pep8 changes
new 0971c11 Cleaned up rag.py
new 997d4a3 cleaned up _ncut.py
new 68b087c Docstrings
new b05646e Docstring of graph_cut.py
new 1e39dfc rectified threshold mistake
new 273b9d0 docstrings to _ncut.py
new 9c8b1ef docstring to _ncut_cy.pys
new 2017e35 Comments to graph_cut.py
new 22b5f4a Added example for ncut
new c915aef Updated bento file
new d398b7f used standard eignen solver
new fc9e8c4 doc string correction
new 62f0909 Remove unused except caluses
new 6cc0cf4 use map_array instead of modifying graph
new f261e51 rename method to cut_normalized
new 7e2f33c Refer sections of paper in comments
new d8c0b2e Add unit test
new 07cb79c Cut cost is computed by Cython code
new 452921d API changes, comments and docstrings
new 69fec94 rag copy in threshold cut
new 3ad2b68 test skip
new 35c9746 comment
new 9371c4f Fixed potential import error
new 1fa7bce skip error test
new 6d9a3c3 reformat comments to be standard format
new 0ff30f6 added Adam Feuer (myself) to contributors file
new 95f18c7 Added support for different illuminants.
new ba664df Added new tests. The support for a wider range of illuminants is now tested.
new c8f3a66 Added tests for the new functionality.
new 3b3bb01 Fix denoise tests
new 6d0bf72 Docstring changes and typos
new 33a0e91 Merge pull request #1095 from ahojnnes/denoise-tests
new 31cf1ac Fix isodata-thresholding according to Zachary Pincus
new 8aa5ef8 Return to old function name threshold_isodata
new fc085ec Account for case when image only contains one unique value
new ce0e917 Fix test cases which are now wrong due to previous binning error
new 23fd7b8 Improve test coverage
new 83a6b64 Fix return value description
new f9fd683 Test missed line for coverage
new 6eb17a4 Merge pull request #1090 from ahojnnes/isodata-fixes
new 3973b30 docstring changes and code movement
new 0538082 updated imread parameters comment to standard format
new 25f08ff removing trailing space (PEP8 formatting)
new ef7da3b explicitly checking for None as per code review feedback
new ded138c test case for in place
new 03d3873 docstring of _label_all
new 0c18562 corrected similarity
new 8494b80 removed trailing blank line in comment
new 3bc3b4f Merge pull request #1083 from adamfeuer/import_export_pil_image_objects
new 4a231cf Minor changes
new ab60edc Fix Reference format
new 7bd1da8 Remove legacy CI config
new 693816c Merge pull request #1098 from ahojnnes/tox
new 72f6a8c Make suggested changes to build update and use travis_retry for all installs.
new 7d991d2 Merge pull request #1099 from blink1073/build_update_followup
new 6ef01cb change ref format in example
new b617631 Update _ncut_cy.pyx
new afa345f Update graph_cut.py
new a363802 Merge pull request #1080 from vighneshbirodkar/ncut
new 39dfcc4 Frist working copy of RAG draw
new f4aa0fc Formatting
new 5c662b4 Docstrings
new 6928e5d Corrected docstrings
new 78caebf string wrap
new 4005749 rebase and change API to support mpl colorspec
new 95b20ad None comparison
new adeb868 Fixed doctest
new 5bd5507 handled matplotlib not present case
new bcbfdb2 add desaturate option
new 3553809 pep8
new 5c5b60d Chnaged palette in example
new cfaa83c Chnaged palette in example
new 82f1584 removed file save
new e42c065 corrected title
new 7730eb0 fixed init
new 4bb4076 fixed imports
new 6e09628 update relase doc
new c43180f force copy
new 344e2a5 cast labels in ncut
new 2b1dde2 freeimage: Correctly handle saving uint16 images (closes gh-1101)
new 9ea0d27 Merge pull request #1102 from stefanv/bug/freeimage_uint16
new 3f7ce2e Added example with cubehelix
new a52cb01 Fix bugs in HOG
new 23bc3ed Replaced convolve1d by ad-hoc gradient computation
new 808e53c Code valid for all image dtypes
new 64e20d8 Minor fix
new f7a7c1b Merge pull request #1105 from pmneila/master
new 12b1a91 remove self loops in rag
new 103f48b Spelling error
new badd718 Merge pull request #1106 from vighneshbirodkar/ncut_fix
new 25d6c58 Merge pull request #1087 from vighneshbirodkar/rag_draw
new 26e0348 Comments of the PR
new 11881d7 Merge tag 'v0.10.1' into debian
new 6e24c58 Absorbing the patch from Julian
new 8a337db Move canny from filter to feature
new 23a6f0a remove auto added __author__ in __init__.py file
new af59d06 ENH: Simplify marching_cubes for maintainability.
new b13ea22 fix wrong version number
new 5ccc0d0 update api_changes
new bc3563c Added gitwash as an option on the makefile.
new d4297c9 Updated the gitwash build.
new 00b5ac6 Some minor documentation enhancements.
new cc94236 Merge pull request #1112 from pelson/docs_tidy
new 812b23d making in-place addition modification suggested in issue #1089
new 218eb4e fix import inside documentation and update TODO
new bfcc275 fix import in filter.__init__
new 936211b move import to avoid infinte recursion (filter import peak that import feature that import filter)
new f86b621 Canny is now deprecated and will be in api_changes in v0.13
new 517f9e0 Merge pull request #1116 from rebeccaroisin/inplace_addition
new f1a6d2d Website font readability improvements.
new c30db59 Merge pull request #1121 from Cadair/doc_theme_tweaks
new f87db0a Fixes a bug in _update_doc in skimage/io/__init__.py that will attempt to compute max of empty list if no plugins are found.
new f8a0f27 hack to avoid circular import when import canny
new a85a8bc Fix #1108
new d63d894 Modified rank filters package so that the _core function in core.pyx outputs to a 3D image, permitting the generation of images with arbitrary size feature vector pixels. Implemented windowed_histogram that generates a windowed histogram of an image.
new 997172d Merge pull request #1124 from blink1073/master
new 7ebb238 Fixed some test failures and added a test for windowed_histogram.
new e8987b5 Fix matplotlib install, make installs verbose, add spacers
new e8e23fa Fix typo in spacer declaration
new da93619 Fixed some issues with the new windowed_histogram function in filter.rank. It used to be able to output uint8 histogram, whose max pixel counts of 255 could easily overflow. Addressed by limiting the output type to float. Normalized histograms are now generated, otherwise behaviour is unpredictable at boundaries or when pixels are not permitted by a mask. The new optional n_bins parameter allows the caller to specify the size of the histogram generated. Having it fix [...]
new 4102fd9 Merge pull request #1128 from blink1073/fix-travis
new 2355c17 Add mask option to exposure.equalize_hist with test.
new 3f7735d Merge pull request #1109 from blink1073/add-exposure-mask
new cdf7ad1 Speedup moments_central function
new 8d2fdaa Speedup moments function
new 4f1adee Make moments functions C functions and reuse centralized moments
new 2308363 Replace pow() with iterative multiplication
new 725c199 Merge pull request #1096 from ahojnnes/regionprops-speedup
new d9a85a1 Move handling of blit behavior to axes object.
new 410f392 Push handling of line tools to axes level for better coordination.
new 1799846 Remove unused parameter from docstring
new 2d9d8bb Refactor blit manager and event manager to viewer
new 1775e95 Switch plugins to use new tool api
new 778f62d Updates to get all tools tested and working
new 7864adb Make other suggested style changes
new 1740392 Add on_scroll behavior and allow line to change width.
new 1d99966 Remove leftovers of old logger
new 85439b1 Merge pull request #1115 from JDWarner/enh_marching_cubes
new b8c5887 Merge pull request #1129 from stefanv/log_leftovers
new 7ac6323 Fix failing tests
new 2976358 Fixed Python 3 error in plot_windowed_histogram caused by use of incorrect division operator. Also tweaked the similarity computation a little.
new b9ac11d Exchanged array output parameter for pointer and Py_ssize_t in kernel functions for slight speedup.
new 0936522 Improved plot_windowed_histogram doctoring, removed unnecessary imports and removed an internal testing line.
new 9f5a6fd Fixed comment in plot_windowed_histogram.
new a900965 Docstring and comment improvements and fixes in plot_windowed_histogram. Readability improvement to skimage/io/__init__.py
new bf02a92 Small fix to windowed_histogram doctoring.
new e6bda5a Fix to skimage.filter.rank.windowed_histogram docstring. Better explanation of technique in plot_windowed_histogram example, along with (hopefully correct) citations. Relevant additions to release_dev.txt and CONTRIBUTORS.txt.
new 914afee Merge pull request #1113 from jucoste/move_canny
new 2b98d85 Merge pull request #1065 from blink1073/multi_linetool_drawing
new 118ce12 Undone change in skimage/__init__.py.
new ceae401 The format strings were updated to include numbers.
new ffe7156 Stephan's comments
new 5342299 PEP8 compliance and doc formatting fixes.
new c518f78 Fixed mistake in generic.py
new 2bfa7b6 Merge pull request #1127 from Brittix1023/windowed_histogram
new 9ee8749 PEP8 fixes and rearranged images in plot
new 4c3c495 Corrected code to conform to Python coding conventions (PEP 8).
new 90b2755 Fix spelling
new c4bb726 Replace jet with hot colormap
new c4deb2e Merge pull request #1132 from ahojnnes/win-hist
new acbee6b transform: Remove some leftovers in __all__
new 39104e8 Merge pull request #1134 from magcius/fix-star-imports
new 051c54c Fix indexing bug in freeimage plugin
new 84f3835 Fix Big Endian check
new c60b58c Merge pull request #1114 from pelson/gitwash
new 5920d67 simplify notations
new 4115441 Merge pull request #1043 from sciunto/joblib
new 491cef2 Merge pull request #1135 from stefanv/freeimage_big_endian
new 272e931 Added Stephan comments.
new 7cdf7da build with -fsigned-char to fix test failures on ports
new b944328 add patch to fix freeimage uint16 and big endian loading
new 87c72ae BUG: add signed flag to chars
new e1fb28b update changelog
new 9214e81 DOC: introduce variable num_peaks for reusability
new 4ce6ecd Merge pull request #3 from juliantaylor/port-fix
new 9077338 Merge pull request #1136 from juliantaylor/signed-char
new 6f33d75 ENH: added -b debian for Vcs-Git field for correct debcheckout
new 865cc1b Merge pull request #1137 from sciunto/doc
new cfb913d add CheckBox widget to viewer. fix ComboBox widget docstring
new cb735dc added tv_denoise.py viewer example using the CheckBox
new 026fc8e fix image scaling in tv_denoise.py example
new 28a41ee Clear the blit background when the image changes
new f078bcf Removed the print statements from the test code.
new df2bb43 Merge pull request #1144 from blink1073/master
new 27fcb81 Incorporated Stefan's comments.
new c87d556 Update find_contours docstring to use r/c notation
new e557b92 Merge pull request #1145 from jni/find-contours-docstring
new 8257823 Fix swirl docstring to use (row, column) nomenclature
new 02a6e21 Remove extra space
new 3f1b8a4 code formatting fixes
new 5877e2e Remove blit background when overlay changes
new 1a1d665 Use functools.wraps in default_fallback dectorator
new 92a0d22 Merge pull request #1151 from blink1073/default_fallback_doc
new c85e08b Rename (x, y) -> (row, col) in _geometric.py.
new c913652 Merge pull request #1146 from blink1073/master
new 15ffd52 Improve desciption of inverse_map and add option to direclty pass coordinates
new ca9a155 Improve inverse_map description
new 1a31968 Make warp function N-D compatible, and add example to doc string
new 9b5b5b8 Remove deprecated parameter of warp
new 27d765a Highlight fact that warp_coords is only meant for 2(+1)-D images
new 1b49b49 Make error message for wrong input dim more explicit
new f900941 Add comments to different conditional paths
new 9b4f2d9 Add support for 2(+1)D images and given output_shape for 2D images
new da36750 Make row, col ordering clearer in doc string
new 0eeebea updated local_binary_pattern documentation
new bdd9fb0 PEP8 formatting
new b67d46a Merge pull request #1150 from blink1073/overlay-blit
new abcd613 Fixed ellipse symmetry and added some tests.
new 88a9cb4 Added float conversions for python2.x
new eb7cdb5 remove outdated comment line
new bd5e2d6 Merge pull request #1139 from grlee77/viewer_checkbox
new 525a5f8 Add ndim checks in filter.edges
new 9c4d4fc Updated CONTRIBUTORS.txt
new 6ff1bf2 Move comments into if scope
new 6e26f3a Fix indendation of parameter description
new 46305ee Remove legacy parameter
new fdf0908 Add option to skip clipping of output, and detect if input float image has negative values
new f5c6274 Extend description of clipping behavior
new 877a7ba Add test for N-D warping
new d367ff4 Use for mgrid for Py26 compatibility
new c59cd1c Catch PIL imread problems early and generate error message
new adae753 Fix indent
new 688f669 Perform im.getdata check up front
new 7e33ee7 Clean up error message.
new 53760e3 Point user to Pillow docs for external libraries
new 8758ce9 Minor formatting of error message
new cc622df Merge pull request #1156 from alexeyum/ellipse-symmetry
new b986753 Merge pull request #1155 from atemysemicolon/master
new d6c6499 Implement new assert_nD utility function
new d26e62f Merge pull request #1159 from blink1073/check-ndims-in-edges
new 6a8c5e4 Implement assert_nD in filter and feature packages
new 17ff39f Allow assert_nD to take multiple dimensions
new 028fe11 Use assert_nD in template.py
new 4a270a7 Fix syntax error
new 6a05edb Fix syntax error and weiner check
new d2aaae4 Add docstring to assert_nD
new 04f9102 Fix assert_nD call in template.py
new bcac1b1 Fix canny test to reflect new error type.
new 69c87b5 Merge pull request #1142 from ahojnnes/warp-coords
new 2a057f7 Make ndim explicit arg for clarity and update docstring
new ded8fa3 Catch a few more asserts
new 2db19c6 Add ndim argument in utility method
new f846320 Add option to combine tform with inverse tform
new 8432b90 Add option to rotate around specific center
new b143eae Merge pull request #1167 from ahojnnes/inv-comb
new 97e4599 Merge pull request #1168 from ahojnnes/rot-center
new c2aef96 Merge pull request #1162 from blink1073/improve-pil-error-messages
new 6cac05a Merge pull request #1163 from blink1073/implement_assert_nD_array
new 343d1d2 Fix incorrectly documented non-optional argument
new 5ba4b7c Expose point_in_poly and move to measure module
new dd96b24 Merge pull request #1169 from stefanv/doc/denoise_opt_param
new 6234397 Merge pull request #1081 from SiggyF/fedor-setup-installrequires
new 4fc6f8b BUG: segmentation fault when unwrapping 3d image
new cb7187e Update build requirements and documentation
new 214613c Run restoration test suite when run as main
new d50afed Add test for preserving image shape in deconv
new 2b7bf24 Add shape fix for deconvolution functions
new 141d459 Fix small errors in the documentation
new 91f1d80 Fix typos and grammatical errors in uft.py docs
new c99a148 Merge pull request #1174 from jni/deconv-shape-fix
new d440cad Reorganized dependencies in DEPENDS.txt.
new c92f54c Fix install_requires string formatting
new 75448b8 Fix python 3 unicode error
new 984782e Remove unicode decode
new 075b40b Fix python3.3+ builds
new 78bcf17 Look for version instead of version
new 6a2f682 Add description for networkx optional requirment
new d0fb18f Merge pull request #1123 from stefanv/pnpoly
new be5d4b1 Add stop_probability to RANSAC
new eba3d75 Add sanity checks for input parameters
new b4a6571 Allow modification of LineTool handle style
new f7ee2c2 Add more complete documentation for widget callback
new 8a914e5 Invoke linetool with properties to increase coverage
new 7d58147 Reminder to remove previous installations when upgrading on Windows
new 758bcb4 Improve my grammar
new 63c9253 Also add handle style to ThickLineTool
new ea00067 Fix class names
new a2def31 Warn users of `remove_small_objects` about type
new 8711c74 Test type warning from remove_small_objects
new b44d4f7 Added Johannes' comments.
new 1450864 Merge pull request #1179 from stefanv/linetool_handle_style
new d1d7af0 Merge pull request #1180 from stefanv/doc/widget_callback
new d0d4021 Merge pull request #1181 from stefanv/doc/upgrade_binary_win_install
new e5e8353 Merge pull request #1183 from jni/warn-single-labels
new 28df57e Merge pull request #1130 from capitanbatata/more-illuminants
new 1547551 Remove extra space
new c594416 Fix stop_probability description
new 7157c19 Make matplotlib a requirement.
new 75365cf Fix travis syntax errors
new 74f2631 Fix another travis syntax error
new fc2c319 Move matplotlib to a runtime requirement
new 606807e Remove redundant 'usage requirements'
new e812399 Replace PIL with matplotlib in build_versions.py
new 8390780 Fix typo in travis preventing mpl 1.0 from installing
new cb3b5c5 Install matplotlib build dependencies
new 36e5628 Fix matplotlib base version and install libjpeg-dev
new 3b1b3f6 Install libjpeg-dev, not build-dep libjpeg-dev
new 15fb553 Try explicit apt installs for matplotlib
new 06fd017 Improve description of stop_probability
new 669b0bf Merge pull request #1176 from ahojnnes/ransac
new febef86 added non in-place merge
new 3a9df73 Corrected new id logic
new 02fec24 change in random number max logic
new ac6fbaa Allow for unicode version info
new 0d29ded Try a newer mpl due to Tkinter err on install
new 124db32 Fix error in viewer test when mpl is present but not qt.
new 9ea43d7 Avoid type incompatibility warnings
new 8e318d0 Add networkx to requirements
new d844e43 Update depends and add simpleitk and imread
new 92c28f9 Update travis to better reflect requirements
new 1ce3250 Allow for 3-part dependency versions
new 3d4a081 Print full required version str
new b4b7760 Install networkx up front
new 4f91a4d cleanup of if else block
new e6270c5 Do not require jpg support from io plugins in novice test
new ec55adf Add pillow to requirements (but allow for PIL)
new 4a41feb Move Pillow to runtime reqs in DEPENDS
new 99c95f8 Refer to rank filters from morphology functions
new 1ae9292 Fix setup version requirement handling
new 558dfad Fix __import__ fromlist
new 71c51a4 Add the rest of the packages to the build_versions script
new 99f5fd8 Use distutils LooseVersion for version check
new a765e96 Install pillow from wheelhouse
new 7cb8839 Use strings as required by LooseVersion
new 4b18721 Fix syntax for python3 in setup.py
new 9355ecd Turn off doc examples to see if the build passes otherwise
new c3ffc5e Fix handling of version_attr for python3
new c8e73d8 Do not change matplotlibrc settings until after pyqt install
new 82176ab Only install pyamg on py2.6 and py2.7
new 3450543 Reinstate pyqt install.
new 76bbb9f Try a reinstall of matplotlib with pyqt support
new d6ad6ea Fix yaml syntax
new bc1ce12 Revert to mostly working travis
new fdeeaa2 Add note about supported data types in rank filter replacements
new 028fb53 Bump matplotlib to 1.2
new d19a041 Try matplotlib 1.1.1
new 69e137b Fix required version
new 2015592 Update to use wheelhouse
new 8571141 Fix travis syntax and use tools/header.py
new 0c288de Clean up travis
new 967b191 Remove print statements
new 0be4a38 Use all min reqs on Python2.7, fix syntax error and variable overshadow
new 4645dc8 Use github downloads for specific versions on Py2.7
new bdb59ce Fix travis syntax errors
new cad3f96 Fix syntax error and QT API var handling.
new f2d5435 Fix string interpolation error
new 60db60f Clean up required versions
new 98e230a Another attempt at variable substitution
new 75928e8 Yet another attempt at variable substitution
new 6ec4527 Fix installs for libfreeimage3 and astropy
new b462764 Fix install of imread
new 2f61421 Clean up simpleitk description and imread link
new 39267d1 CLN: Improve performance of disk and diamond selems
new 12dab41 CLN: Correct dtype typo
new c73d1c9 Clarify that uint16 images are only faster up to a certain bit depth
new 53c4d93 Add notes about Travis usage
new 3cecfd8 Add notes about and variable substitution
new 0f69c04 Merge pull request #1193 from pratapvardhan/morph-selem
new e384689 Use tabs to line up if blocks
new 878a1f3 Update Travis notes
new 1ca05d7 More updates to travis documentation
new d16904c Merge pull request #1175 from blink1073/update-setup
new df1e206 Use correct rank filter replacement function
new 5f769cb Fix handling of non-uint8 images for PIL imsave.
new 7374f4a Add tifffile.py and its license.
new 8049c64 Add tests for new behavior.
new c5b2834 Remove old tifffile plugin in favor of using it in PIL plugin.
new 2e47ca2 Add tifffile.c and associated build target.
new 199c3da Clean up tests and add to bento.info.
new d9e169c Fix PIL tests, move helpers to _shared, fix widgets test
new f938d29 Fix deprecation warning in draw.py from numpy 1.9
new 1a1a7ca Ignore tifffile.py in coveragerc
new fa5a575 Reinstate tifffile_plugin for backwards compatibility
new ee755c6 Remove temporary file and clean up imports
new 8396d59 Reinstate tifffile test
new 74c87b5 Clean up imsave behavior and beef up docstring
new 9b768dc Add references in docstrings
new fb9f7e7 Properly handle all image types for PNG, beef up docs
new be279de Fix handling of temp file removal
new 047650c Fix reference citation
new bae672f Do not try and save signed integer output, improved signed checks for tif.
new 708ab05 Fix docstring typo
new a623fd3 Rename the convenience methods
new 3b3b44b Clean up pil and tif tests
new ae19578 Remove unused import
new ba73009 Fix relative import and test import convention
new b51d95f Try removing the system numpy
new 4c908d4 Force numpy uninstall
new a618ad0 Make sure there is no previous matplotlib or scipy
new 78453cb Numpy is the only one installed
new ec5432a Merge pull request #1191 from ahojnnes/morph-ref
new fe6912b Add 'imsave' to the '*' output of pil_plugin
new 9baa6c7 Update doc / trigger a travis rebuild
new b48c82f Make pil the default plugin
new 84a56fa Fix docstring links
new 93d8bce Merge pull request #1189 from blink1073/fix-pil-plugin
new cf7c875 Push parts of travis into separate shell scripts
new 4233e9f Remove variable exports
new b1f7bd8 Add shebang lines
new 0bad613 Add explicit sh executable
new 87d3a07 Reorganize files
new 7cb084b Use an explicit matrix
new d415486 Try removing the explicit env
new 81d5498 Put the TEST_ARGS in travis_setup.sh
new 184b9fe Specify Qt API
new adfe6b3 Rename variable to MPL_QT_API
new 5f719d1 Put the whole script in an sh file
new b68643a Make shell scripts executable
new f39775a Remove the travis numpy
new b594f0a Rename the script
new ba1193b Switch shell to bash
new 5511639 Use more generic shebang
new 10cc476 Try to get system matplotlib to pass requirments.txt
new 29e51a0 Fix shebang line
new fdfb242 Update the notes
new 6e326ad The python path should include the parent directory now
new 73e639e Fix formatting of 'for' loops
new e146c3e Clean up formatting and a comment
new d3172b3 Keep consistent with calling convention
new 5dbf433 Put the WHEELHOUSE as a global variable
new 16f2393 Put the other env variables up top as well
new 2d4604a Move dependency output to setup script
new ef215de Install skimage so we do not have to fool with PYTHONPATH
new 9c7cee3 Use a straight install
new c52a429 Move env variable to before_install
new 3a0f0cc Add whitespace
new 0e3c838 Remove whitespace
new 095160f Reinstate the separate build step
new 53892e2 Move the rest of the code to the scripts.
new b37913d Use a null backend during the doc examples
new f5b30bf Formatting
new 283e759 Matplotlibrc was in a different location in mpl 1.1.1
new 3b63e19 Fix MPL_DIR location
new 0c35d13 Add a try/catch for RectangleTool.disconnect_events
new 532e460 Disconnect the events manually
new 72292f7 Use a manual hack to remove the canvas events for old MPL
new 725c376 Make sure we disconnect all the signals
new 0fabb0c Fix comment typo
new 18cb5cd Merge pull request #1198 from blink1073/travis-sh
new 36ab379 Use the PyPI tifffile instead of bundling
new 24ac72a Bump the required tifffile version
new 56915d2 Fix tifffile imports
new 6cff910 Update the setup script to install tifffile
new 7d171a8 Fix install_requires
new c74b652 Remove install_requires altogether
new d33833a Use retries where applicable
new 71233cc Break script into parts and travis_retry optional installs
new 4795946 Make new script executable
new 0d2799a Export the MPL variables
new 37d6ddf Fix handling of variables - use local
new 268eb5f Add tifffile to a new external package.
new dddbc1a Add the __init__.py to make it a package
new fbba5e5 Remove tifffile as an external dependency
new b6f775a Use new wheels site and do not install tifffile until optional
new 50aff00 Add tifffile.c to the build
new 88719b3 Fix path to tifffile.c
new a3c8ce3 Rename file to a valid module name.
new 284cdd0 Do not test or cover the external libraries directly
new 0569524 Use proper nose option
new b5da90e Just disable doctests in tifffile_local
new 17a3b50 Use tifffile 0.3.2, which passes doctests
new 713452a Use newer version of tifffile.py.
new 0419c1e sequential numbering of nodes using max id
new 31ecc3d Change None to 0
new 7734cdf Move tifffile license description
new 4d50466 Add Travis and Coveralls badges to README
new 96bf747 always return new id and put new id logic in a function
new 8fe238d Merge pull request #1202 from jni/badge
new 95f4aa7 Avoid star import
new 59e2bad Merge pull request #1199 from blink1073/use-pypi-tifffile
new 1ae060d Free disk space during travis install
new 79473ee Quiet down optional installs to avoid hitting 10000 line limit
new f6ef94c Merge pull request #1204 from blink1073/travis-streamline
new cb1a26c Fix deprecation of canny function
new dbab977 Merge pull request #1206 from tonysyu/fix/canny-deprecation
new b898819 Docstring changes
new f73fc33 Merge pull request #1188 from vighneshbirodkar/rag_merge
new f736047 Refactored measure.label, added documentation.
new b65ebdf Added support for 3D arrays
new d3049a0 Refactored Cython stuff with easier code readability in mind
new 98047f5 Cython minor fixes
new 152a6d0 Fixed typos + added docstrings and comments
new 416f3a2 numpy 1.6 compat fix
new 815ea29 Added some comments + requested reformatting
new 99818f0 Update error message for no plugins
new 92929fc Print correct version when dependency is not satisfied
new 86fdbf4 Use recommended extern import method for cython
new 45b3826 Merge pull request #1213 from blink1073/fix-windows-install
new d10ab06 Merge pull request #1210 from stefanv/doc/io_null_doc
new 4eef9c5 Merge pull request #1211 from stefanv/bug/setup_dependency_error
new 21d6ef1 Remove null plugin since we have the pil plugin as a requirement
new 91266c5 Update tests to use default plugins.
new dfffd07 Clean up the imports in the pil_plugin
new 6906dbc Use matplotlib as the default imshow
new 59a9cfe Merge pull request #1214 from blink1073/remove-null-plugin
new d7fdfeb Remove contiguous conversion for out array
new 1a3ec02 Add tests for discontiguous out arrays in grey morpho
new f52f2c1 Raise meaningful error in reconstruct w bad method
new 39d042e Test correct error for wrong method in reconstruct
new 66aaf71 Merge pull request #1217 from jni/morpho-out
new 2374b6a Merge pull request #1219 from jni/reconstruct-error
new 25653dc TST: Unit test to check for 3d unwrap seg fault
new 8bba07a Merge pull request #1171 from jjhelmus/unwrap_phase_3d_bug
new e0e4fe2 Add tifffile support for MultiImage
new 0134946 Update multi_image test and install tifffile for travis.
new a70a493 Fix implementation errors
new 732c9c3 Add tifffile support for MultiImage
new 09e6439 Update multi_image test and install tifffile for travis.
new caaf37e Fix implementation errors
new 49a9248 Cleanup
new 945e163 Add animated gif, a test for it, and tests without conserve_memory.
new d853b68 Fix problems from rebase.
new 9a126e7 Add a comment about reading in order
new 93c6d01 Use pil_to_ndarray to load PIL images
new 39d9dcf Fix implementation of pil_to_ndarray in MultiImage
new 4298b8b Allow multiple frames in PIL data in imread
new 1c0d86a Allow PIL imread to read multiple images
new bf9bcaa Add a note about sequential access.
new 305abf6 Change MultiImage to use new imread.
new d27fadb Avoid circular import
new b4838c3 Fix failing tests
new 76fc909 Finish merging multiimage capability into collections
new 502f6af Pep8 cleanup
new 0d76827 Allow keyword arguments to imread
new b7da800 Clean up docstring
new 4485f6d Add tests for ImageCollection with multi_images
new b5a988a Close the image file pointer when done.
new 59842b3 Test collection slicing with multi-images.
new ad39397 Indentation fix
new e8967ab Merge pull request #1200 from blink1073/multiimage_tifffile
new 1b217f9 replacing lena in examples and most tests
new 49acabc adding name to contributors
new fd94ca6 renamed gabors
new fc18fb7 removed lena reference
new 2ba4184 modified array
new 5de38f2 Modified docstring
new 5c21895 removed typo that caused test error
new 034a7ad Use equal_nulp for more robust test comparison
new 6d827e2 Update edge detectors to produce values in [0, 1] and clean up tests
new 463432b Document threshold scaling
new 3172198 Remove prints in test suite
new 22c9969 Merge pull request #1221 from stefanv/pr_1126_update
new 53f93a7 Added tests for 3D labelling (that fail)
new c3cf989 Merge pull request #1046 from stefanv/osx_wheels
new 8e2f397 add shape option to draw functions
new c736ff2 MAINT: mutualize function
new e8cd48b DOC: enhance docstring
new 44d1017 DOC: fix mistake optional flag
new 80b9807 Merge pull request #1222 from sciunto/add_shape_draw2
new 78a7b73 Rename and deprecate filter module to prevent shadowing of built-in keyword
new 75080e6 Check for deprecation on import is problematic. Rather just check that filter can be imported normally.
new 3ed648e Fixes according to PR feedback
new f61f2d0 Do not render filters documentation twice
new 1bfb10c Ensure import of old filter namespace raises warning
new e03638a Filter won't be imported twice--check for its deprecation correctly
new 2e90f4b For `filter` submodule, explicitly set warning registry location
new 3260594 Add debug print to failing assert
new 046fe99 Make sure warning is raised upon import
new e8ee365 Simplify warning test
new 438a935 Fixed bugs so test pass now
new 7c7ecc4 Mainly typo fixes
new c5b94d5 Merge pull request #1184 from stefanv/filter_rename
new 379d8b1 Add example for `adapt_rgb`
new c109978 Set colormap to grayscale
new 56e4283 Update import to match rename of `filters` module
new 3f96709 Merge pull request #1078 from tonysyu/example/adapt_rgb
new 67464e2 Fixed a typo + cleaned the code semantics
new d298318 Redone the background handling = considerable speedup
new eb55d17 Removed declaration of deceased function
new abf3dbc Added and tested proper exception handling concerning array shape
new e6f726b Move debug info into top level travis for visibility
new 35a3adc Merge pull request #1226 from blink1073/show-travis-build-versions
new 204553a Remove build status until Travis-CI yields stable builds
new 7c66797 Merge pull request #1227 from stefanv/remove_build_status
new 06c46ec Introduced the connectivity parameter, regrouped some code
new 20755da Fixed typos and made some style fixes
new fe4a9b5 Made the scan code cleaner and faster (but longer)
new 53e1912 Merge branch 'label3d' of https://github.com/matejak/scikit-image into label3d
new a4b841d Fixed bugs
new 9bccefb Update docs for img_as_ubyte
new ad3400d Changed a link that pointed to a specific release of scikit-image using the "stable" symlink.
new 236274a Implemented Stéfan's minor comments.
new f530e86 Merge pull request #705 from emmanuelle/userguide
new c8bf2b5 Added a short paragraph + see also section in docstring of exposure.equalize_adapthist
new 568810f Fixed broken link to NumPy's docstring standard.
new d07caea Mended code style
new ac11b61 Fixed typos, added array shape checking
new 0325d9f Merge pull request #1230 from emmanuelle/clahe
new 879f8bb Protect exposure.histogram from integer overflow
new 3b44258 Streamlined connectivity vs neighbors handling
new 90d8d65 Merge pull request #1232 from jni/negative-histogram
new 0e7daf4 Update docs in dtype.py: mention scaling of values
new 802b22a Merge pull request #1229 from almarklein/patch-1
new 9a8c7e5 fixed blob area overlap function warning
new eae2196 First version of sections on color and exposure.
new 7841513 Removed deprecated module name filter from tutorial
new 71a5437 Add fused type specialization for moments functions
new fc0a606 Use uint8 type for simple moments functions
new b5a0798 Merge pull request #1235 from vighneshbirodkar/blob_fix
new 112ed8a Merge pull request #1237 from emmanuelle/filters_rank
new 8a67733 Add encoding header
new bc7df0e Merge pull request #1239 from ahojnnes/moments-templ
new 1b0c40e Add signed edge operators and deprecate unsigned versions
new b26e9bc Add deprecation instructions for old unsigned edge map versions
new c45473b Use new edge operator functions in test cases
new 7256f88 Add missing comma
new b0876ea Remove deprecated absolute edge map description
new dea3552 Merge pull request #1240 from ahojnnes/edge-sign
new e41bff8 Added fix for the strange input array shapes + tests
new 414e9ec Added docu for gabor_filter. n_stds added to the parameter list.
new e5cd943 Added examples for Gabor filters.
new 2c830a3 Updated Return section.
new bea0c1b Added an import of `median` from the `filters` module (it's `filters.rank.median`, but it is convenient to have the very common median filter in `filters` as well)
new 78e4d7a Added a second example to the edge filtering gallery example, focusing on the difference between Scharr and Sobel filters.
new b730777 Modified test for median filter import
new 6f56113 Added references on rotation invariance and filters.
new 98f41fb More detailed docu. Modified examples. Added doctest skipping of matplotlib's commands.
new 714dd6d Merge pull request #1119 from ikajic/filter-docu
new 6c44449 Merge pull request #1243 from emmanuelle/filters_rank
new 70944f8 fix building of doc in virtualenv. add short description in readme
new d78c9aa Completed docstrings for the different edge filters.
new 2636abb Small additions to some docstrings in exposure module
new 76a3504 Merge pull request #1249 from arve0/fix-doc-build-virtualenv
new d14edd2 fix github logo icon path
new 4e2fd7c DOC: add link to main website + refresh
new 40d6a51 Use virtualenv for all builds and install everything from wheelhouse
new 043721a Use system packages on Py2.7
new 5553ea4 Corrected typos + modified docstring that made doctest fail
new c6ebe6c Removed negative connectivity support as requested
new 77a78a2 Updated docs for regionprops to reflect the dropping of regions with label value 0
new 495c4b6 Merge pull request #1255 from dedalusj/regionprops-docs
new 3423b43 Merge pull request #1251 from arve0/fix-github-logo-icon
new b9a7166 Merge pull request #1247 from emmanuelle/gallery_edges
new 05c55c1 fix phrasing
new f19dcbb Clean up use of python version check for pyqt install
new 5ed582d Add install_requires for six
new 62a37bd Fix python version check
new 36aa4cd Merge pull request #1254 from matejak/label3d
new 4d1eb92 DOC: move website and ML to the top
new 6a8b795 Merge pull request #1252 from sciunto/readme
new fc0fdd2 Update CONTRIBUTORS.txt
new b81cebc Merge pull request #1256 from matejak/contributors
new f9b10c5 Corrected another bug that made doctest fail
new 3f719df Merge pull request #1250 from emmanuelle/seealso
new 23e8175 Invoke sudo to create link to system PyQt
new 8a01994 Merge pull request #1258 from blink1073/add-install-requires
new f822439 Merge pull request #1253 from blink1073/travis-venv
new 3756028 Fix rank filter kernels
new c0bedcf Minor corrections
new a508ec5 2-D and 3-D implementation of NL-means denoising
new a5ed4ac Some improvements of non-local means denoising:
new 5f89395 Modified indentation in places (PEP8)
new 2e91b0d Moved non-local means denoising to restoration submodule
new cc6882b Modified bento file with non-local means extension
new ecae784 Removed test file that has been moved to restoration submodule
new e26f902 Modified import to be compatible with Python 3
new bbd9828 Wrap code at 80
new 4004f04 Faster version of non-local means denoising for 2D greyscale images
new 873a2ba Modified a few docstrings that made doctesting fail
new 076d95b Webhook to report Travis-CI status on Gitter
new 8dcfbf4 Merge pull request #1261 from emmanuelle/doctest
new 51f5bd5 Merge pull request #1262 from stefanv/gitter_travis
new 80edc0e Move the virtual framebuffer to top level yaml
new 8f7d9d6 CLN: Remove unused import and add module docstring
new 8042c77 Merge pull request #1268 from pratapvardhan/morph-selem
new 81d3065 Merge pull request #1267 from blink1073/fix-travis-retry
new f7e9846 Fix handling of imgnum
new 296e492 Fix handling of multi-image gifs and add test
new ed85249 Reinstate run_module_suite in test_pil
new a4a628b Fix file indexing in ImageCollection
new 2966e26 Fix handling of singleton frames in pil_to_ndarray
new 9ccd373 Merge pull request #1263 from blink1073/fix-load-imgnum
new 9c76508 Test all modules (including underscores), and always doctest
new 4df8ea4 Use the test arguments from skimge.test_verbose
new 2f0d815 Update test args for command line
new 3756e7a Do not use importlib in tifffile_local to avoid warnings
new 8f89852 Improved docstring
new fc667d9 Merge pull request #1269 from blink1073/test-all-modules
new 1b38c17 Beef up docstring
new cf499bf Add tests for all rank filters and reformat code
new be7d0be Increase timeout to install requirements
new 57c3272 Set the pip timeout globally for Travis
new d7023f1 Enhancements to the text
new 82ee0b1 Merge pull request #1244 from ahojnnes/rank-fix
new 3c4573b Install simpleitk from wheelhouse if available
new 0da2129 Merge pull request #1274 from blink1073/use-wheelhouse-simpleitk
new b105485 Do not try and install SimpleITK on Py3.2 or 3.4
new 94dab0d Fix boolean logic for SimpleITK install and add warning
new c63c5e3 Fix bug in bicubic interpolation and extend test cases to higher orders
new 97fb673 Add reference to bicubic interpolation
new 6321b42 Make code PEP8 compliant
new fd16d9a Fix reference syntax
new 5cb2c63 Modified the order of API docs page so that table of contents is always at the top (following #880)
new 5e3d805 Fix broken test case, which used black image
new 84871a6 Fix bug in get_pixel3d
new 8753979 Fix quadratic interpolation
new 57533c8 Merge pull request #1272 from blink1073/fix-tifffile-warning
new 04a5b62 Fix typo in bash conditional
new dcc021c Use SciPy for second order interpolation, add warnings to buggy functions
new 00c3a97 Remove broken test case
new 4e64876 Over and underline alignment
new 04a3c89 Removed seealso field that was not recognized in gallery example
new af2e6c3 Merge pull request #1275 from blink1073/use-wheelhouse-simpleitk
new bc78bf8 Create a new figure for imshow if there is already data
new 1de9329 Prevent travis-try breaks when recreating hard link for PyQt
new 2622778 Merge pull request #1285 from blink1073/fix-travis-setup
new c23ab37 Merge pull request #1281 from blink1073/fix-imshow
new 8066c6d Merge pull request #1273 from blink1073/increase-pip-timeout
new bd94253 Add python3 doc building capability
new 2058fe2 CLN: Minor cleanup - unused imports, pep8
new 9d65169 DOC: Add test functions docstrings
new a55a334 Merge pull request #1286 from blink1073/python3-doc-build
new dad2b18 Merge pull request #1288 from pratapvardhan/morph-selem
new 3a1079a Misc PEP8 fixes
new 073f28e TST: Test for selem.cube
new 1213a3e Merge pull request #1289 from ahojnnes/random
new 53bb6f9 Merge pull request #1290 from pratapvardhan/morph-selem
new 9395464 Updated numpydoc files from the github package numpy/numpydoc
new 8f79724 Merge pull request #1292 from emmanuelle/numpydoc
new b9a02e0 Add a script to create env variables and travis folding helpers
new 0b4884a Switch to a single script to get the folds to work
new 91332bf Use our own retry command since travis_retry is not exported
new fd6f7fe Use the system python for 2.7
new 68547f0 Do not explicitly remove packages from requirements.txt
new 12248e1 Fix usage of set command
new 78974d9 Fix section titles to avoid spaces
new a8d480a Add a coveralls repo token
new 6c8385f Update travis_notes and move to tools folder
new fbd11fe Merge pull request #1293 from blink1073/streamline-travis
new c795948 Reinstate the pip timeout
new b14fa31 Shuffle some commands back to before_install
new 33e3719 Merge pull request #1284 from emmanuelle/fix_dox
new 7cb3071 Minor corrections
new ee86697 Merge pull request #1294 from blink1073/streamline-travis
new df42414 Improved example notebook generation
new 21d3f15 Fix warnings generated by gallery examples
new a38b1c1 Fix integer division in CLAHE
new 7f8cd65 Fix docstring markup errors
new 655aca6 Raise an error that was suppressed to please Travis-CI
new 1344096 Merge pull request #1277 from emmanuelle/api_layout
new b0a822a Use integer bins when histeq'ing int images
new 4c68a5a ENH: ellipse structuring element
new 8d50561 TST: Test for ellipse structuring element
new a83256c Merge pull request #1291 from jni/exposure-fix
new 813142b Check for invalid upsampling block sizes
new 125d53b Add test cases for invalid block sizes
new 7fe31b2 Merge pull request #1295 from stefanv/doc_build_fixes
new 65c6b77 DOC: Clean up doc strings
new ea95835 Merge pull request #1299 from ahojnnes/block
new db7b431 BUG: Change dtype
new 1a53690 Minor corrections
new a2a8696 Merge pull request #1051 from ahojnnes/bicubic-interp
new 302b373 Add Gitter badge
new 6b22c33 Merge pull request #1301 from stefanv/gitter_badge
new 8a790bf Improve code style
new 1da86de Make the initialization deterministic
new fec98b4 Merge pull request #1259 from emmanuelle/ug_transform
new b890698 Merge pull request #1303 from ahojnnes/unwrap
new 2d4a77d DOC: Change selem.ellipse params
new b72a960 DOC: Misc spell corrections
new 6346d54 DOC: Example spell corrections
new b15f55c DOC: Revert to old
new c175fbc Merge pull request #1304 from pratapvardhan/misc-doc
new cd21181 Merge pull request #1298 from pratapvardhan/morph-selem
new 9bfaaa4 apigen: Fix function detection in Python 3
new 3b0651c Expose seed parameter, fix doc string
new 03be934 Set seed for test cases
new 908cfa4 Merge pull request #1307 from ahojnnes/unwrap-rand
new acc06d0 Merge pull request #1306 from stefanv/py3_apigen_fix
new 5b71cd9 Added an example of use of CanvasTools.RectTool to allow generation of docs. RectTool is used to write rectangles over an image (lena). This example also can be useful for set_color explanation using both [RGB] and single value color setting
new a01a5ed Added an example of use of CanvasTools.RectTool to allow generation of docs.
new 37a45a2 Contributor file updated .... very nice to be part of this beatiful scikit!
new f8fba67 DOC remplace iff by if and only if
new 6b0c3f7 Merge pull request #1315 from sciunto/ffi
new 04b9981 try to format properly a function in examples of RectTool
new 5401d00 deleted ">>>" in body of print_the_rect function
new 0ae8c4a Clip to min and max range of input image, add missing clip parameter to other functions
new 0779167 Introduce parameter to keep range of values
new dedcee6 Fix keep_range and add test cases
new 3e881fe Create helper function for image conversion
new 313032d Make sure 1x1 images are 2-D
new e35f9c3 Remove test for invalid shape
new 515ec9f Rename keep_range to preserve_range, fix test cases
new a1a2f9c Remove __init__.py from tests folder, remove unnecessary load of test image
new ad96b91 ... added in indented code
new 20d8152 Fix matching test cases
new 451d8aa Fix novice module with new dtype behavior
new 0d2c5de Use in-place operation for clipping
new e070274 Add more description to doc string of helper function
new e38ed91 Add missing return value description
new 8955bbf Merge pull request #1302 from ahojnnes/warp
new 874d68b # This is a combination of 7 commits. # The first commit's message is: Add a known_warning decorator and suppress warnings in color pkg
new 9e8f919 Handle warnings in several packages
new 0debedd Handle more warnings and reset io plugins as needed
new 79c648b Accommodate upcoming changes to RectangleSelector API
new 2756358 Clean up PIL plugin and handle more warnings
new 542cd4f Fix some doctest warnings
new f72882f Import scipy before turning on warnings
new 4680f30 Add a test setup helper function
new 6db92d3 More doctest and pil_plugin fixes
new 782ba46 Handle more warnings
new a4e4e57 Create new expected_warnings helper and some cleanup
new 1b905d4 More cleanup and updating of tests
new 01ca1d1 Add a random seed to the setup
new c0a0490 Fix handling of multiple warnings and update tests
new 2d3ada1 Allow for no exceptions to be raised and cleanup
new 3829401 Fix label wrapper function
new cb2745c Change default neighbors to None
new 2a6b4cc Import scipy.sparse in setup_test
new 4453120 Allow warnings in the minimum build
new d37ccca Fix Py2.7 build errors
new 2e0deb9 Fix syntax error and missing | operator
new 23ae571 Fix final failing test on Py2.6 build
new bea5731 Update docstring and fix pyamg warning check
new d760c0a Fix scipy.sparse.sparsetools warning
new 736f565 Fix indent in docstring example
new d28ae51 Travis auto-build Doctest skipped to avoid window opening
new 0c2773b Use typed memoryviews
new ac52af7 removed numpy import and spaces
new 9c2807a Merge pull request #1321 from ahojnnes/hough
new f898bd0 Style fixes
new a7a84bb Draw the canvas when creating the ax to avoid RuntimeError
new ecc5821 Try using matplotlib cleanup decorator
new 7b5dd3b Merge pull request #1313 from blink1073/suppress-test-warnings
new b7f4f61 Remove unnecessary measure.label shim
new 6f1eb31 Merge pull request #1325 from blink1073/remove-label-shim
new 65c1d4e Update viewer for PyQt5 compatibility
new 47065d7 Use a smarter backend selection
new 297ccea Do not try and guess the mpl backend
new 6850857 Remove debug raise
new 8d40cbd Allow viewer package to import without Qt
new 6f57873 Do not use ImportError behaviour in viewer
new 2eee1fa Fix import error in viewer.utils.core
new 11c6a9f Fix another viewer import
new 6d44577 Fix the dummy Signal
new 7474db1 Another fix for dummy Signal
new c3ade44 Instantiate QtCore dummy class
new 8da175d Add dummy Qt properties
new 42b330e Add QWidget to the mock Qt
new 67fadc0 Fix mock Qt objects again
new f89ab05 Merge pull request #1314 from SalvatoreScaramuzzino/RectTool_docs
new 51ab675 Fix lingering merge issue
new d3f2d11 DOC: Update bootstrap sphnix links
new 14a2b5d fixed Qt5 compat
new 7da4d5a Merge pull request #2 from flying-sheep/pyqt5
new d714d0b Separate qt version check from has_qt flag
new 5520ccd Initial work on array dimension naming guide
new 0b77958 Restore NumPy from Numpy, grudgingly
new b998405 Replace 'level' and 'plane' with 'frame'
new 76103d4 Define 'prefetching' for users
new 5358564 Finish code snippet for timings
new 4a04a6c Fix and add output for timing calls
new 0dd81de Add paragraph about data locality
new ad2b02b Label transpose operation for clarity
new 9c770db Prefer row/col to r/c when talking about circles
new f9b5f44 Clarify boolean masks on color images
new e4d91d1 Give 3D image examples
new 097f8ea Space comment and code in plot directive call
new d24ce2b Merge pull request #1328 from pratapvardhan/misc-doc
new 1d8e02b Removed normalization of h parameters because float images will be normalized anyway.
new ecaa959 Implemented asymmetric distance computation to save speed factor of 2
new c5e38dc Renamed module, since tests were breaking because module and function had the same name.
new 8b9a777 Bug correction: I had forgotten to add __init__.py
new 9438b96 Add default bg_color to label2rgb
new eab2168 Add test to ensure default bg_color in label2rgb
new e030e8c Merge pull request #1337 from jni/fix-label2rgb
new 8f4d024 Add docstring to matplotlib imshow plugin
new fac8fde Overhaul matplotlib imshow plugin
new c68c8e5 Improve mpl imshow plugin docstring
new fab4ff2 Fix incorrect call to colorbar
new 984e22b Replace Axes with AxesImage where relevant
new 1768899 Add tests for io.imshow mpl plugin
new 9fe4f33 Add tests for nonstandard images
new 400c3fd Rename ax to ax_im in mpl imshow plugin
new 30c522e Use different colormaps depending on input image
new 2bdd239 Overhaul imshow to clarify flow
new e472009 Add test for signed images
new c6dff69 Don't create new plot automatically
new 7b2dbcb Expand the docstring for imshow
new 5d11520 Create new figure for each imshow test
new 61d9812 Don't create superfluous ip variable
new c3ccb60 Merge pull request #1300 from jni/io-imshow-data
new 87998d6 Update docstring and create test module setup function
new ecfdc91 Merge pull request #1338 from blink1073/imshow-fixes
new c102a0b Add reference to SLIC0 in SLIC docstring
new 879a7b0 Update treatment of convert2lab in slic
new 6339eff Fix filter package shim implementation
new 62d6a3d Merge pull request #1340 from blink1073/fix-filter-pkg-shim
new aa2215c ENH: Fully cover `pad` and backports from NumPy 0.10dev
new 530ffa9 Merge pull request #1341 from JDWarner/cover_pad
new dd9030d Implemented fast algorithm also for 3-D and 2D-RGB images. Changed API so that there is only one function for fast and classic algorithms.
new 72125aa Add underscore for ReST reference
new 8befed2 DOC: fix typos
new 310ddf6 DOC: fix typo
new cd70059 Merge pull request #1339 from jni/slic-doc
new 60d0c81 Changed type of error returned for image dimension strictly greater than 3.
new 2f60de7 Create function to center and normalize image points
new 9839194 Improve conditioning of homography design matrix
new 5dbb6e3 Improve conditioning of silimarity transform design matrix
new 91c697c Handle special case of 1 pixel image
new acf68c6 Add new parameter to catch exceptions during RANSAC
new 9b16b35 Merge pull request #1318 from blink1073/pyqt5
new 8ebe073 BUG: unwrap_phase on compressed masked array
new eef3734 Remove end of line whitespace in test_unwrap.py
new de01ea5 unwrap_phase returns masked array when image is masked
new d3024b5 No SegFault when unwrapping a 2D fully masked array
new 8eebb17 No SegFault when unwrapping a 3D fully masked array
new 56764f8 Wrap scipy.ndimage grey morphology functions
new 8ffed5e Wrap scipy.ndimage binary morphology functions
new 1fa6904 Workaround for strange ndimage selem inversion
new 04536cc Update morphology dtypes tests
new 97770e9 Minor update to binary morphology docstrings
new fb7ed1d Add crop function, inverse to pad
new eaa2aec Add test functions for crop
new d7138f1 Fix incorrect crop tests
new c96fdb9 Fix automatic copy even when copy=False in crop
new 893c3be Import crop into util package namespace
new 92433b2 Fix and test 0-end bug in crop
new f321fef Fix morpho open/close edge bugs by padding image
new b1891dc Make find_boundaries symmetric
new d538abd Fix order kwarg for some versions of numpy.copy
new d855514 Update binary morphology tests, which no longer warn
new ff1631c Update find_boundaries with new modes
new 32a960d Fix 'outer' mode of find_boundaries
new 9c78fce Remove unused deprecation warning
new fb893c2 Add correct subpixel boundary estimation.
new a55e334 Set up correct type for find_boundaries test
new a406f8d Make subpixel find_boundary doctest more readable
new 28591cc Allow different modes in mark_boundaries
new 257502c Prevent unnecessary array copy for RGB images
new cb2002c Allow custom background_label in mark_boundaries
new 242dbf9 Don't outline boundaries by default
new 307d4b6 Simplify code for coloring boundaries
new 6586d1e Test subpixel mark_boundaries
new 9b9730b Specify mode for mark_boundary tests
new ac5c0c3 Fix incorrect call to mark_boundaries in test
new 7935e51 Clarify and fix docstrings
new 9eed552 Replace em-dash with regular dash in comment
new 2d0a3ef Expand explanation of _invert_selem
new 658a83d Don't use backticks to refer to functions
new 1439341 Remove unused cmorph extension
new ea989e2 Fix a few typos
new 110ac37 Add doctest skip directives to timing calls
new 738953b image_unwrapped created as ndarray always
new 6eb8b0d Add table summarising image types
new 64f00bb Add note on 5D images
new 2f05992 Expand on skimage support for 3D processing
new 3667b4d Be more specific about cat image dimensions
new f1b309e Specify standard Cartesian coordinates
new 1847b18 Test symmetric selems for rank/morpho comparison
new d0366d2 Merge pull request #1310 from jni/morpho-update
new ea95b54 Merge pull request #1348 from jjhelmus/fix_unwrap
new ad85dfa Disable catch of all warnings, return nan params instead
new 4c781cf Fix doc string
new ee5c6fb Use relative imports in skimage files
new 2d7cebb Resolve incorrect rebase
new f9d867c Raise Cython dependency to 0.21
new 52895c2 Fix invalid relative import
new d3c4c70 Speedup regionprops
new 0f1dc3d Add a paragraph or two about preserving range
new 6633ca9 PEP8
new d853f5c Merge pull request #1344 from sciunto/doc
new fcac24e Merge pull request #1351 from ahojnnes/reg-prop
new 22ffc20 Added broken test for feature.peak_local_max when the image is 3D and num_peaks is set. The current code only holds for 2D images.
new c5ac705 Fixed bug in feature.peak_local_max: num_peaks should now be usable for ND arrays.
new 305f5fd Using numpy.argwhere makes code easier to read
new b06420f Added Kevin Keraudren to the list of contributors: test and fix in feature.peak_local_max
new 8b24d27 Merge pull request #1355 from kevin-keraudren/peak_local_max-NDarrays-issue1354
new ec6aa2a Added docstring to helper functions in cython submodule
new fa13744 Changed API of nl_means_denoising function to have a multichannel flag
new 065bc18 Merged 2D and 2D RGB functions for non-local means denoising
new e83873d Removed blank lines in docstring
new 2e0b37b Changed variable names for coordinates for better consistency with skimage conventions. Moved some code to inline functions to improve clarity.
new b6a1bcd Merge pull request #1324 from ahojnnes/rel-import
new 4697d66 [ENH] Removed eps parameter that was not needed.
new b35fe69 working code
new 40698c8 docstrings
new 62d50d9 unit tests
new f33c2ca Description of example
new 9a192bf fix example
new a080aa7 rebase and docstring changes
new fe57614 added nx check in test
new bb11caa edge heap
new d0e2552 complete heap implementation
new 931f40a blank line
new e0edc91 lists in the heap to avoid copying of dict
new 1af5aad doc string
new 8e6990f addition inline
new 72b9e9f Rebase work
new 7f9be89 Spelling
new c68729e spelling check
new e41b343 Removed ASCII art
new 4c4d710 handled the function with callbacks
new 409c361 added merge_in_place option
new c5f8f27 code cleanup and removed test
new 52124a4 for iterator change
new 58cc399 rename mapping array
new b11ae90 rename mapping array
new 3466a68 put code into functions
new 05a996a changed function calls
new ec17cb2 Added tests
new c96fbe4 minor formatting
new 237b11f Removed local debug statement.
new d0a9523 Fix line wrapping
new e79bbed Improved test case and removed duplicate test
new 13f9b89 Merge pull request #1319 from ahojnnes/geom-est
new d3775f9 Improved test case
new 2ffa484 Fixed tests
new 112b0b4 Global constant defined for distance cutoff
new 009e761 [ENH] Docstring cleaning
new 03dc489 Add subpixel-precision image translation registration function to feature module
new 1992c35 Merge pull request #1100 from vighneshbirodkar/ha
new 2c63598 Force novice.Picture.from_size to return a uint8 image
new a188380 Add handling of CMYK images
new 0859b36 Avoid creating an int64 array
new b9dd8ca Merge pull request #1359 from blink1073/fix-novice-from-size
new 850f6ef DOC: add parallelization to tutorials index
new a211547 Merge pull request #1361 from sciunto/doc2
new ca0ae43 Add test for cmyk and use relative imports
new 3728c61 Reinstate run_module_suite
new d8f6a66 Do not add alpha channel to CMYK images
new d9f5aa9 Compare the images in LAB space
new 4dbf33b PEP 8: spaces and operators
new ee81e00 Helper functions for computing the integral of the difference between image and shifted image.
new 50907cd Modified variables' names.
new 6770e9e Modified name of image dtype.
new bcd24ea Removed a few redundant lines.
new 0f4b092 Added comment for inner loops.
new 5624325 Merge pull request #1360 from blink1073/fix-cmyk-jpg
new 4c9dbe1 Added a comment about normalization.
new fd6c7a2 Replace frame with plane
new ba2134a Update discussion on time-varying images
new 605f059 Move RAG files to skimage.future
new 1b74866 Move package to skimage.future.graph
new eeaf766 Update bento file to moved RAG code
new 483d7d6 Update plot_rag examples to use skimage.future
new 5bd3673 Update plot_ncut example to use skimage.future
new d2d50e9 Add package docstring for skimage.future
new 0087758 Fix setup.py cascade
new 9cbeeca Update RAG doctest to use future
new e5fe82d Fix even more tests still importing skimage.graph
new 0d1a2ef Import graph into future parent package
new b3e5b12 Merge pull request #1280 from jni/array_order
new 7d5ed51 FIX: Informative IOError if package installed w/mixed permissions.
new d638e04 Add concrete usage examples for preserve_range
new 372ea53 Merge pull request #1365 from jni/future
new cd0a648 Merge pull request #1366 from JDWarner/mixed_permission_error
new 85a68cf Cannot use bare deprecated decorator
new 69c0fd5 Give an alternate canny location
new d070b2d Add an explicit test for canny deprecation
new f4970f9 Fix canny import test
new b34f7aa Merge pull request #1367 from blink1073/fix-deprecated-decorators
new 4bdde3d load correct _frame_index
new 7030870 Merge pull request #1352 from jni/data-types
new 3748557 fix for concatenate test
new d082d13 Merge pull request #1370 from r3vl1s/imread_collections
new 8042dc2 Fix holes in lab conversions and add tests
new 1af0edb Update test to reflect new error behaviour
new 0987640 Fix some sphinx warnings and add to build
new be7154f Skip build on 3.2
new 5ccdd36 Remove imshow from PIL plugin Do not provide imshow, show in PIL plugin to prevent conflicts
new fa226ad Update the README with some warning hints Update the readme with some warning hints
new 72218fb Install latex and dvipng Install latex
new 1a612e5 Do not build docs on Py2.6 Do not build docs on PY2.6
new f0cabfe Merge pull request #1356 from blink1073/travis-build-docs
new 2654818 Be more specific about citation not found error
new 73aa5a2 Remove citations in first line of docstring
new ed7aecd Fix links
new ebee2bc Merge pull request #1371 from blink1073/fix-reference-links
new 371d46e Remove unnecessary option and update test
new a4e4612 Merge pull request #1079 from blink1073/fix-colorconv
new 3eb7755 Added some comments inside Cython functions.
new 23b643a Fix behavior of skimage.doctest when nose is not found
new b9aceac Merge pull request #1374 from blink1073/fix-fallback-test
new 7da8119 Fix compatibility with PIL
new 977ec17 Fix numpy 1.9 warnings about array.fromstring
new 0ec4016 Merge pull request #1375 from tonysyu/fix/pil-compatibility
new 2970de3 Initial draft of Li thresholding (comments left in)
new 979d751 Cleaned up comments, removed unnecessary vars
new 5eef38b Removed nbins input (from use with histogram input)
new 914248c Test against PIL on python 2.7
new 2613b81 Fix name of pil package
new c0a5010 Merge pull request #1377 from blink1073/test-against-pil
new de4df65 use feature.canny
new 2308ba0 fix typo artist.remove -> artists.remove
new 3f33ce7 Merge pull request #1378 from arve0/fix_canny_simple_viewer_example
new 5247c36 Merge pull request #1380 from arve0/fix_Blitmanager.remove_artists
new 4644bdd Merge pull request #874 from emmanuelle/nlm_denoise
new 3acae22 move CollectionViewer `update_image` to parent class
new b27eb88 Merge pull request #1382 from arve0/ImageViewer.update_image
new cf09b0c Incorporate fixes for complex images
new 71a8969 improve test coverage. Use SciPy's fourier_shift for examples.
new 6ab7df1 Fix gh-pages under Python 3. Make robust against running twice in a row.
new a3c89ce Merge pull request #1384 from stefanv/py3_ghpages
new c006704 Update README and installation instructions
new 3cbae84 PEP8 fixes, License file added, tests added
new 2bc9e82 Minor stylistic changes, removed lena test
new 6ddec9b Merge pull request #1376 from jmetz/threshold_li
new 84bcb58 Fix Hessian matrix eigvals
new d546884 Mention license type
new 09bb2c3 Moved contribution statement to CONTRIBUTORS.txt
new 06b2a50 Merge branch 'master' into threshold_li
new 28d0691 Minor modification to docstring
new 1649fb6 Merge pull request #1392 from jmetz/threshold_li
new 23f1a88 Merge pull request #1391 from ahojnnes/eigvals-fix
new 3f6d9fa Merge pull request #1385 from stefanv/README_deps_update
new ea02a4e FIX: Ignore exception if attempted deletion fails (fixes #817)
new 4156e20 Merge pull request #1397 from JDWarner/fix_find_contours
new 78a0eb6 Implement appveyor builds
new 8845169 Merge pull request #1320 from blink1073/pr/1057
new cf8d69c Merge pull request #1077 from buzmakov/master
new d6870c6 Merge pull request #1066 from msarahan/PhaseCorrelation
new 4cbd8fd Add @msarahan to CONTRIBUTORS.txt
new 9848cd5 Add missing 0.10 release notes
new 27d46c9 Add 0.11 release notes
new 435989e Merge pull request #1398 from stefanv/0.11_release_notes
new d3bb552 Update version to 0.11.0
new 4d8f468 Fix DEPENDS markup
new 11396fa Fix another formatting error in DEPENDS
new 1da2446 Set master branch to 0.12
new 4054a96 Merge tag 'v0.10.1' into releases
new b719fd7 Merge tag 'v0.11.0' into releases
new b6f64f2 Merge commit 'v0.11.0-102-gb719fd7' into debian
new 12ad6e8 Fresh upstream release - includes slicing-error.patch freeimage-fix.patch
new 72d543e Updated debian/watch to avoid deprecated redirector
new a68c92e refreshed patch
new 18c1748 debian/{,tests/}control - added python{,3}-networkx to {build-,}depends and Recommends
new 7e68e69 debian/tests/python* - for now exclude testing of test_tools.py due to #779847 in mpl
new 4efa68c Fix DEPENDS markup
new aa964ef Fix another formatting error in DEPENDS
new ac240ee Update version to 0.11.2
new 10af2b2 Use relative imports to plugins.
new f997ef6 Merge pull request #1406 from anntzer/plugins-relative-imports
new b203039 Update tagging instructions for release
new eb6c3ed Fix RANSAC for invalid model estimation and confidence corner case
new d6a737b Update doctest for new estimator API
new d21b6b8 Merge pull request #1411 from ahojnnes/rans-fix
new 47a4418 Use np.inf instead of float('inf')
new 1712ee0 Merge pull request #1413 from ahojnnes/inf
new 0e61374 Add a helper function to check for low contrast
new d4463ba Merge pull request #1412 from blink1073/contrast-check-function
new 33e3654 Fix missing peaks in hough_line_peaks.
new bc52e4a Local neighbourhood suppression on hspace_max.
new ff29d2c Sort peak candidates by intensity before starting supression.
new c623974 Handle Sphinx 1.3 API change
new 7d65366 Try a fix for py27 build
new 9c3a6c1 Fix support for Sphinx 1.3
new 15f6497 Revert changes to force Sphinx 1.2.3
new 5c6ee95 Remove unnecessary sphinx version check
new 3aa767d Merge pull request #1424 from blink1073/contrast-check-function
new f737ac4 move docstring from viewer.widgets.core to viewer.widgets
new ae95170 add note about latex
new d745e9c DOC: Fix Sphinx rendering of dev process docs
new 660c161 Merge pull request #1388 from arve0/move_docstrings_to_init
new a67e0f9 Merge pull request #1428 from arve0/doc_requires_latex
new 6fceaa2 import from _label instead of _ccomp
new 0e92486 Merge pull request #1429 from JDWarner/dev_guide_indentation
new 2f62cf9 Clarify 'low-contrast' in docstring
new 0d3d5f1 Update See Also to References
new 779ab42 Merge pull request #1416 from jni/low-contrast-docstring
new 6051ff2 Merge pull request #1430 from arve0/document_measure.label
new 2107ab2 install_requires from requirements.txt
new 98ad602 install sphinx before running tests in travis
new 3c6e000 add some more magic
new 8af4373 TST: Barn-door testing of SaveButtons clicks
new e91dcba Merge pull request #1436 from ericdill/save-buttons-fix
new 45f21d3 Fix handling of ImageCollection indexing and add test
new 80555a2 Add a note to the docstring
new 4344817 Remove debug error raise
new a51d49a Always use _find_images()
new caea879 More specific test in freeimage
new 73b1942 Do not attempt to use _frame_index for exotic load_patterns
new 9ef99d0 Fix freeimage collection test
new a25d4d2 Merge pull request #1426 from arve0/dependencies
new 94d987d close conda install code string
new f9b85c4 Merge pull request #1446 from arve0/readme_typo
new acc1ee0 Allow clear_border to operate on labeled images
new 8ff27aa Merge pull request #1440 from blink1073/fix-imread
new 4921397 Changed input format,updated docstring, PEP8
new 77d7258 Fix for broken setuptools
new 65d525b Merge pull request #1452 from blink1073/fix-pkg-resources
new 5aa9c5d Remove coverage table. Add document with release notes and download instructions.
new adac822 Fix setup to allow installing from PyPI ≈ Fix setup to allow installing from PyPi Another attempt at fixing the setuptools problem
new eed18b8 Another random warning guard
new 3e9506c Merge pull request #1457 from blink1073/fix-pkg-resources
new e531e57 Only index tif and gif files in collection
new d30ed25 Added implementation and doc string
new 29ec5ee Added example and test
new 1f570a1 Formatting changes
new 2e23788 corrected title in example
new 222221c Added bento.info entry
new 1a8ce17 Corrected bento entry
new 12fb4cb Removed debug print and corrected formatting
new b6f2125 Allow keyword arguments to imsave for PIL plugin
new ad8c94f Fix handling of non-gif and tiff files
new af1f567 Add temporary_file context manager
new 62e82cc Do not read in the whole array
new f7d47b9 Merge pull request #1453 from blink1073/only-index-tiff-gif
new 1a1ebff Merge pull request #1408 from stefanv/tagging
new edb7f27 Merge remote-tracking branch 'origin/master' into v0.11.x
new 76b7e42 Set version to 0.11.3
new 71424c3 MAINT: point wheel upload script to terryfy
new bf711d5 Merge pull request #1461 from matthew-brett/fix-wheel-upload
new 13e8f21 Merge tag 'v0.11.3' into releases
new 054c78a Merge branch 'releases' into debian
new 1b2c17e updated changelog for new point release
new 7fbf2ab Merge pull request #1460 from jni/fix-pil-imsave
new e5991c8 Add missing comment '#' markers for doctest skip
new 8d038b7 Merge pull request #1464 from jni/fix-doc
new 80ef48c Add spacing in novice model to make docs render correctly
new 633bb7f Pick up Cython functions when building docs API
new 208736a Merge pull request #1468 from stefanv/docs/api_cython_funcs
new 1288140 Merge pull request #1467 from stefanv/doc/novice_examples
new 2662bd5 gh-pages: Read skimage version from __init__.py
new 1396f74 Merge pull request #1469 from stefanv/doc/gh_pages_version
new 841da2b Fixed crashing bug in slic.
new 9de5a45 Added test for buffer overflow in slic.
new a615623 Added function to generate binary image with rounded (blob-like) objects.
new b66fa13 Removed obsolete Image class from io submodule.
new 944bc85 Merge pull request #1486 from emmanuelle/remove_image_class
new 9adcd89 fix more informative error while reading image
new edde930 Merge pull request #1487 from hawkerpl/pillow-imread-error-message-fix
new 43246e3 Blob detection supports for non-integer sigmas
new eb6ddc7 Changed local_maxima to float32
new 833edc1 Fixed typo
new c86c6ef Fix tests for #1257
new dc0a91b Fix doctests for #1257
new b80e494 Change data types to conform to style guide
new d5099db Fix PEP8
new 690a839 add button class
new add8419 Merge pull request #1492 from arve0/viewer_button
new 7741317 Merge pull request #1475 from gustavla/slic-fix
new cff1530 Correctly refer to combined installation and release notes
new c8a3df5 Merge pull request #1455 from stefanv/doc/release_notes_and_installation
new d7a80f5 add reset button to crop plugin
new 3c8bf02 Fix skimage.io.imread returns incorrect dimensions
new 47cfcb4 TST skimage.io.imread returns incorrect dimensions
new 6a86862 Sync doc theme with website
new 3d3351b Fix failing test
new 549def7 Fix failing test
new 231b1c3 Fix reference to release notes
new ef8f8c7 Merge pull request #1494 from arve0/reset_button_crop_plugin
new 3b0179e Improve test robustness
new 1c3af75 Addressed a few minor issues raised by Juan and Stefan.
new a8a39eb Used new function to generate binary blobs in existing gallery example
new 073c973 Fixed example in doctest.
new 556cb34 Merge pull request #1498 from cgohlke/patch-2
new 883baa0 Add a multi-page rbg tiff file
new ef9c4d8 Fix handling of img_num=0 cases
new d351c13 Add tests for multipage_rgb tif
new 5f067ff Move tests to pil plugin and fix file path
new 6fc4e11 Add in-place operation
new 113c998 Add note about blob detection api change
new b479eab Fix failing pil test
new 0c69cdc Fix out-of-bounds access in color LUT for NaN values
new e751d24 Modified test with a less stringent condition on numerical value for the mean value of blobs image.
new 92b4081 Merge pull request #1504 from ahojnnes/denoise_bilateral_fix
new 0491326 Remove explicit call to use_plugin
new 1ef9046 Modified (again) test accuracy.
new e240dff Reinstate explicit plugin
new 0eb7d13 pop_bilateral docstring: the->pixels
new cde04ad Merge pull request #1507 from arve0/pop_bilateral_docstring_typo
new 2b10dda Merge pull request #1485 from emmanuelle/model_binary
new dfaab19 Add a multipage tiff test and cleanup test_tifffile
new a74ba0e Merge pull request #1502 from blink1073/test-mulitpage-rgb-tiff
new 575689b Update measure.regionprops.weighted_moments_central doc
new 87355f4 Merge pull request #1513 from joelfrederico/skimage-measure-regionprops-doc
new 4b0456b Merge pull request #1488 from danielwe/blob-float-sigma
new 49a1060 update structural similarity to nD implementation with gaussian weighting to match other reference implementations
new 44f1fd3 add multichannel support to structural_similarity
new b193e79 structural_similarity: add option to return full ssim image in addition to the mean
new 3b27107 structural_similarity: add image_content_weighting option
new 6ba1596 sample vs. population covariance difference addressed to more accurately match reference implementations
new 6294dcb allow remaining hardcoded constants (sigma, K1, K2) to be modified via kwargs
new 3bf6cc1 add additional tests
new 86e0744 replace _discard_edges with skimage.util.arraypad.crop
new 9cb4b4b revise argument handling code for multichannel case
new d781fc5 docstring fixes
new 9090aa6 remove multichannel magic and default to False. fix bugs in tests introduced during rebase
new 6317aac use scipy.ndimage.gaussian_filter instead of a custom implementation
new c7916ff remove image_similarity; set 11-tap Gaussian via truncate=3.5; add links to references
new ce8e88d remove truncate argument from gaussian_filter for scipy<0.14 compatibility
new 42e62e7 Add process_chunks function
new 43bd824 load process chunks into namespace
new 72091a8 Tests for process chunks function.
new bf3bb8d Add latest dask to .travis.yml
new 54e95cf Add latest dask to appveyor
new 4a47127 pep8
new 6be2b1b Smarter chunk selection.
new 08dcf4a Move the function's args and kws to the end of the signature
new ae73d03 process -> apply, more docs
new b2e4468 Use my dask branch instead of master
new 7ac7e10 cpu_count may raise NotImplementedError
new a258fc7 Rename apply and apply_chunks to apply_parallel
new 9be6424 Install dask[array] from pypi for travis and appveyor
new 0e573f7 Use absolute import
new c885a9e Add dask to DEPENDS.txt
new 9d11b38 Add to release notes.
new a8d4995 Defer import errors of dask array until runtime.
new 574159f Add decorator to test parallel execution of unit test
new 0fad295 Add unit test for test_parallel decorator
new 0d4c769 Do not acquire GIL for warp_fast
new 07f2e4b Test parallel execution of warp_fast
new 7a8afbd Do not acquire GIL for iradon_sart
new 83fe070 Do not acquire GIL for hough_circle
new 05def35 Merge pull request #1501 from stefanv/doc_fixes
new 26fa9c7 Merge pull request #1499 from stefanv/doc_style
new 7337a3e Do not acquire GIL for hough_line
new 07f95e4 Merge pull request #1511 from grlee77/ssim_ndim
new 785176b Do not acquire GIL for slic
new 2d0b4dc Do not acquire GIL for quickshift
new 0758fc9 Do not acquire GIL for felzenswalb
new 1a32745 Merge pull request #1517 from ahojnnes/parallel-decoration
new 8e6542c Do not acquire GIL for heap
new a7c0b11 Do not acquire GIL for median_filter
new aa38f24 Do not acquire GIL for rank filters
new c52c7f4 Do not acquire GIL for ORB
new a489b85 Do not acquire GIL for corner detectors
new bca458b Do not acquire GIL for CENSURE
new 98c4e23 ellipse documentation was corrected
new bcb5b34 more formal documentation
new 9cd7ca5 Do not acquire GIL for BRIEF
new 4a95345 Do not acquire GIL for texture functions
new a2ddba2 Do not acquire GIL for hessian_matrix_det
new fcdffd7 Do not acquire GIL for draw functions
new 6e500b1 Do not acquire GIL for shared functions
new ff13229 pep line width violation corrected
new 4e1e861 Merge pull request #1523 from warmspringwinds/ellipse-doc-correction
new 990892f Replace libc.math.NAN with numpy.math.NAN for MSVC
new d6c028a Move dask intall to travis_befor_install.sh
new 14a1858 Remove dask install from travis_script.sh
new bbf3f1c Merge pull request #1519 from ahojnnes/nogil
new 2ebcadb Correct link in DEPENDS.txt
new a65b8af Merge pull request #1493 from cowlicks/chunk-map
new 5ee137f Always maximally constrain bounding_shape when creating ellipse
new 2166041 deps: cython not runtime, add dask, six >= 1.4
new b6aa358 clean up setup.py according to 9cfaf4a
new bf31af6 update appveyor requirements.txt
new c52dc41 install binaries -> then resolve deps
new b455d85 Use np.ravel instead of np.copy This should decrease memory usage and increase speed without affecting anything else
new d9908f7 trust http wheel house
new 84831fc Fix bug when shape parameter is passed in from color images
new ddedb9d use travis python 2.7 and wheel house
new ba79a7c FIX: Use direct, secure link for pip wheelhouse.
new fb66edd Merge pull request #1532 from JDWarner/fix_appveyor
new dedff0e smarter requirements in test env
new 8952154 update install instructions
new 04cbaa1 expect PIL open fp
new a9bdaaf proposed fix and test for broken watershed on flat areas (https://github.com/scikit-image/scikit-image/issues/803)
new 54f8265 Issue #803 order the structuring element by distance to get diagonals processed last
new 06ad9e3 Merge pull request #1483 from ozak/ravel-not-flatten
new e497e5c Merge pull request #1530 from LeeKamentsky/master
new 3faa321 Merge pull request #1526 from arve0/installation_instructions
new 56fc42a removing obsolete (or not found?) link
new 3c82d95 plain python multiblock lbp implemented with test coverage
new 086d8c6 imports now inside of the file
new 941cdda the output of hough_ellipse needs to be rounded before being truncated
new 4dfa467 code simplification
new 15f2273 Merge pull request #1537 from kevin-keraudren/ellipse-round-radius
new 23c6111 Fixing error in ncut when subgraph as all equal weights (#1538)
new 18b1906 removed debug statements
new ae2b0a2 Merge pull request #1534 from michaelaye/patch-1
new fdc7e6f removing unnecessary loop counter
new 658fe02 Merge pull request #1542 from michaelaye/patch-2
new 8a78ad8 skip loop when min and max are equal
new 805e322 Remove logo (moved to branding repo)
new cacd214 Corrected Typo
new c332fd5 docstring change
new cf98558 pep8 changes
new 2cc4066 2d images converted to 3d before removing seams
new 66caaa5 Corrected testing code
new da8e2c7 Merge pull request #1540 from vighneshbirodkar/ncut_fix
new 29c49e9 DOC: add WinPython distribution; correct spelling
new 3f8e94f Allow view_as_window to take a tuple step, and update tests
new eb8c2d2 Fix typo
new 087c14d Merge pull request #1545 from cgohlke/patch-1
new 38e5919 Merge pull request #1543 from stefanv/docs/remove_logo
new 38c7c26 Style and doc updates
new 580db16 Simplify installation instructions
new 84c7954 Merge pull request #1546 from blink1073/window-size
new 46057c4 Merge pull request #1535 from stefanv/doc/installation
new 83c3bd1 Cython implementation of MB-LBP. Updated MB-LBP visualization without matplotlib.Examples to gallery were added. Tests are made more easily readable.
new 37d8a84 Modifed code to use seam map
new f81dfd8 FIX: typo in local version of tifffile _replace_by
new 82a5d0c Remove unused variable in example
new 8d8ac73 DOC/STY: Fix whitespace, harmonize version with PyPi 0.4.1
new 0d13498 Harmonize all ndimage usage across the library
new d39434c MBLBP optimized by taking out constants definition out of function. Visualization function of MBLBP now supports colors and opacity. Examples are updated.
new fb6ef72 public MBLBP function created for users to safely use it.
new c4f8e01 MBLBP is cdef function now. Corrected the example repeated imports.
new 49037f6 added removal function
new 3434b19 Merge pull request #1549 from JDWarner/fix_tiffile_c_replacement
new 0a8fc08 Specify ndimage as ndi import convention
new 61442e0 Switched to using integrate Cython function from skimage._shared. All changes were made to make it fit.
new d20eae7 small correction in documentation.
new eac5663 Changed signatures to use energy map
new ae35dcc docstring updates
new 1e49f49 Added rocket image
new 0622090 Formatting changes
new 17dc213 pep8 changes
new 3f9c800 Modfied test to use new API and added code to remove remaining seams if any
new 5a869dc Added code comments
new 5573546 removed debug print in test
new 56d62b3 Split scipy.ndimage & spatial into different lines
new 7132df7 Merge pull request #1550 from jni/ndi
new cc81bdb moved multiblocl_local_binary_pattern in python file in order for sphinx to be able to correctly creat documentation.
new 0e96098 small documentation correction
new 360d384 used gray2rgb function. Code is more readable now.
new 68f627a pep8. Documenatation correction.
new cbe8f99 Documenatation correction
new 496e8c0 the function name was shortened to multiblock_lbp
new fe85552 changed documentation
new 55fc07e removed reduntant continue, added Cython flags and fixed negative indexing
new 20e49b2 add link joblib website
new 49967b4 Create an optimal step parameter for view_as_windows
new 0ffe44a Ensure consistent handling of division
new f099079 Initial attempt at optimising HOG features with cython
new d55135d Fix comments and tab whitespace
new 2e56e68 change import syntax for python 3
new 5aad171 Add _hoghistogram.pyx to bento.info
new c756d2d Partially fulfilled code review.
new 3719ff2 Updated docstrings.
new aedf63f Switched to cnp where applicable.
new 7535237 Merge pull request #2 from ClinicalGraphics/fasthog
new ecdf71d Switched to memory view syntax.
new ca737e9 Merge pull request #3 from ClinicalGraphics/fasthog
new e247e3b Precomputation optimizations and docstring changes
new 958f410 Changes example explanation text
new fee667b preallocated seam_buffer and added noil
new c3e23b0 Changed x/y to r/c notation. Documentation correction.
new 88e3ac4 Documentation correction.
new 502377e Update _hoghistogram.pyx
new c37fc9e Update _hog.py
new 86624a2 Merge pull request #1558 from blink1073/optimized-window
new b4a3985 Merge pull request #1555 from sciunto/user_guide-joblib
new 8ab6e63 Removed unused import, applied pep8 formatting and corrected a method call that should have been refactored.
new 78cf5a0 Removed unused code.
new 605eac2 Renamed to use row/column naming convention.
new 03b7d63 Wrapped long lines according to pep8.
new b0d5067 Merge pull request #4 from ClinicalGraphics/fasthog
new 85946c8 Changed return type to bint and improved code comments
new 91f74fd Merge pull request #1536 from warmspringwinds/mb-lbp
new 2516844 added missing visualization of the plot
new 1b9a15a Made the indents line up with the (
new 9c141ea Extracted row_index and cell_row from the inner loop
new f633262 Moved more variables out of the loops and modified the docstring
new ded652c Moved more computations out of loops and added division from future
new 8373964 Merge pull request #5 from ClinicalGraphics/fasthog
new 7a2b0a7 Merge pull request #1459 from vighneshbirodkar/seam_carving
new b980e7b Use files from tifffile 0.6.2 package
new be5f6fd Merge pull request #1562 from warmspringwinds/example_correction
new bea9886 I noticed that cy+cy and cx+cx was repeated in the inner-most loop as well
new 3d85503 Renamed x to rows and y to columns, though I might have still missed it in some spots.
new 2500c21 Converted orientation and magnitude to typed memory view. Also changed gradient_columns and gradient_rows, hopefully in the right way.
new 167c8ee I hadn't realized when I changed orientations to an array, that its actually just an int and the original code said range(orientations), so I changed it to np.arange(orientations). Hopefully the tests will now pass again
new f426800 Merge pull request #6 from ClinicalGraphics/fasthog
new 51e683f I hadn't realized I was reusing cc in the loop, so it would crash after one iteration.
new 8d31edb Merge pull request #7 from ClinicalGraphics/fasthog
new 691beaa Adding nogil to cell_hog
new cd30e01 Also added a nogil context manager to hoghistograms
new 70a0ed5 Merge pull request #8 from ClinicalGraphics/fasthog
new f442fe2 Allow plot plugin to have tools
new 23670b4 Explicitly cast upper_left and lower_right to ints
new 6f1e84d attempt to fix #1567
new 9923aad Merge pull request #1568 from sciunto/threshold_li_fix
new 6d63b80 Merge pull request #1524 from bennlich/faster-skimage-draw-ellipse
new 5301a9a added faster, Cython based skeletonize function
new f54c254 fixed docstrings, renamed variables for clarity, removed old skeletonize function body
new f5bf1dd Point contributors to coordinate conventions
new e1afe7e Ask contributors to wrap Cython functions in Python
new 2de03d0 reordered code according to PEP8, modified docstring
new eb8aaeb Use Sphinx links to reference from contributing guide
new 639a046 fixed intra docstring reference links
new cba1cb1 Add blank line after ref to keep Sphinx happy ;)
new 360892c Merge pull request #1553 from blink1073/tifffile-package
new 0c58501 Merge pull request #1572 from csachs/cython_skeletonize
new 55f7981 Fix a broken link to daisy code
new 17a1121 Merge pull request #595 from TimSC/fasthog
new 3ce57f2 Merge pull request #1576 from belltailjp/fix-broken-link-to-daisy-implementation
new 9bfcd44 ENH: `make clean` now removes compiled .c and .pyd files.
new 661b8e6 Merge pull request #1573 from jni/contributing-array-coords
new a47a700 TST: Faster test_multi_image unit tests.
new 80d4e81 TST: Use smaller gif file in test_pil tests
new 83d5ff9 Consistently use relative imports
new 6844b74 Update contribution guidelines to recommend relative imports and releasing the GIL
new 4672534 Subtle wording improvement to test setup docstring
new c63adf5 TST: Remove no_time_for_that.gif from data
new 9c6ab1b TST: Use quarter size images to speed up test_censure unit tests
new 5f0e9a6 Remove invalid link to table of contents (closes #1593)
new 89a717e TST: Reduced size of image in test_blob:test_blob_log for speed
new 8035ce7 Clarified that Bento Building is an alternative
new 45eecd0 Updated novice module tutorial to show images
new 80629c3 Use a simpler operator in the novice tutorial
new 2353113 TST: Smaller data array in 12-bit entropy test for speed
new ba65c35 TST: smaller arrays for bit comparison in test_rank for speed
new a659aa1 Fix and clean up anti-aliased line drawing (closes #1563)
new 5eebce9 Rename starting point of line
new d9213be Fix notebook display bug for novice module
new b140665 fixed documentation to remove redundant links
new f240119 Merge pull request #1600 from michaelpacer/fix_docs_sprint
new d4d3eaa Remove Picture.scale and Picture._rescale from novice module
new 0b983c1 Merge pull request #1596 from david1koeller/novice_picture_fixes
new b4320eb Merge pull request #1597 from library111/DocumentationChanges
new 81d89b5 Merge pull request #1598 from stefanv/bug/line_aa_horiz_vert
new 1b31af7 Fixed variable names to accord with r, c naming convention
new 1d1a1a7 Remove only .c files associated with .pyx source.
new 80397bd Merge pull request #1584 from JDWarner/enh_make_clean
new 19ede51 Merge pull request #1594 from stefanv/doc/remove_toc
new 3bfd51c Merge pull request #1590 from jjhelmus/faster_tests
new 09c8a84 Merge pull request #1518 from stefanv/relative_imports
new 17b882a Merge pull request #1565 from blink1073/viewer-ax
new 43168c6 Mimic the way scipy handles numpy in setup.py
new 39b8198 Fix typo
new 09503cd Fix docstring
new aa420d8 Merge pull request #1606 from blink1073/fix-setup-numpy
new a939eb4 Use a container and pip cache
new 2690fef Merge pull request #1607 from blink1073/faster-travis
new 3272b85 Do not let PIL handle the file handle
new e1596ae Remove unclosed file guards
new 7720527 Fix imsave test
new f1471df Remove offending line
new 1a27bea Allow pil imread to accept file-like objects again
new 2fb59b9 Fix variable name
new 66805ca Try fixing the remaining unclosed error
new 6d7e055 Use context manager for tif imread as well
new 182a6f6 Fix handling of tiffile handles
new b67a4e3 Move the tifffile wrapper to tiff plugin
new f6653b7 Fix tifffile plugin import
new 1b30c68 # This is a combination of 10 commits. # The first commit's message is: Update equalize_adapthist to use new view_as_windows
new 998be36 Update equalize_adapthist to use new view_as_windows
new 6017e38 Style fixes
new e42cb6f Update docstring
new 733b628 Docstring and TODO
new 5ba3cad Update tests
new 944e720 wip
new 489ae2e Fix rebase error
new 3aafbb7 Rename optimal_step and add comments
new c948f9f Fix view as windows test
new 1f56de9 Remove min_overlap kwarg
new acc9a8a Use smarter indexing
new d755dec Remove debug print
new 323a279 Rename variable for clarity
new 6038444 More variable renaming
new 085be65 Remove use of view_as_window and fix docstring
new 80fe225 Fix failing test
new 756b928 Add the viridis colormap and make it the default
new a8580f7 Always create a colorbar and update tests
new b75ee66 Clean up tests by using fresh figures
new 8122e26 Add another file guard
new 7124716 Merge pull request #1547 from blink1073/adapthist-window
new 90da42f Make all of the pip installs quiet to try and fit in 10000 lines
new 24b3a81 Merge pull request #1604 from blink1073/pil-close
new 9f3885f Try only warning once per module
new e309845 Use default warning print behaviour
new 8207863 Enable deprecation warnings
new 5285408 Try and install pyqt on the container
new 4fb80b8 Add an explicit pip cache since we override the install step
new 45676a6 Merge pull request #1609 from blink1073/quiet-travis
new 8860f81 Merge pull request #1610 from blink1073/pyqt-test
new c8b0765 Try using debug and all skimage warnings
new 3d044af Be more explicit about configparser import
new a032b9d Do not try and update scipy on a pip install if already installed
new 6c32be4 Do not try and upgrade larger dependencies on skimage install
new 3d96364 Use a less-invasive approach
new eaaea69 Allow viridis to be used by name
new 88862b7 Merge pull request #1612 from blink1073/fix-manage-plugins
new 70b4e41 Merge pull request #1613 from blink1073/better-test-warnings
new 9fb7676 Fix relative import
new 5632c9c Only add colorbar if the cmap is not the default
new c2f8c4a Merge pull request #1599 from blink1073/viridis
new 3042242 Merge pull request #1614 from blink1073/handle-pip-upgrade
new edc16c6 Added build location checker, does not fully work yet. Complicated error.
new 64c4252 BLD: __SKIMAGE_SETUP__ global variable for detecting build
new 93366d1 MAINT: Fixed __check_build setup.py file
new b92c565 BLD: Updated bento.info with _check_build extension
new 9727711 Removed __check_build directory
new d2519d6 ENH: Build check in skimage/__init__.py module
new f10ae88 MAINT: remove unchecked import from util.dtype
new 00a841f MAINT: Refactored imports
new 70d1afe DOC: Simplified the message when a broken skimage build detected
new a1429f2 Merge pull request #1622 from jjhelmus/check_build_sprint
new b35215e TSTFIX: Missing assert statement and PEP8
new 51fe1e2 Merge pull request #1626 from JDWarner/fix_rank_test
new 60e1537 DOC: Link to GitHub source in documentation
new 8d33d3d DOC: Fix intersphinx mapping w/fallbacks
new b63fefe Merge pull request #1628 from JDWarner/sphinx_linkcode
new 4309d47 FIX: Require networkx 1.9.1 for the 2.6 build
new cbc851b FIX/STY: Remove magic and enforce PEP8 in plugins.
new 7cfbd70 BUG: fix bugs in coord_map for modes wrap and reflect
new a36ab88 TST: add tests for coord_map function
new c5a7354 DOC: add visual example of edge modes
new 2f02ad3 BUG: fix bento.info
new 080c276 DOC: add visual example of edge modes
new 3ae1e31 BUG: bugfix for resize: upgrade image to 3d if necessary
new 9e9c65b ENH: add mode 'mirror' to interpolation.pxd and dependent functions
new 48622ca TST: add test for resizing 2D image with a 3D output shape
new fb0b258 DOC: update the edge mode example to include mirror
new cef22e4 MAINT: PEP8 fixes and _interpolation_test.pyx -> interpolation.pyx rename
new 75edad1 BUG: fix bento.info again
new f45a72e BUG: fix import in plot_edge_modes.py
new 8e3b6bc MAINT: convert additional numpy.pad mode names to their dask.array equivalents
new 81ea7a6 MAINT: All modes in _shared.interpolation.pxd were changed to be consistent with numpy.pad naming conventions. Specifically 'nearest' was changed to 'edge' and 'mirror' was changed to 'reflect'. All functions with a mode argument that rely on these functions had their inputs changed accordingly. For now there is a deprecation warning if the user supplies mode 'nearest'. Mode 'mirror' never appeared in an official release of skimage and so has no corresponding dep [...]
new 81764d8 BUG: update the edge modes in the example to match the current naming convention
new c7a82f8 MAINT: minor spacing issues and typos fixed
new 621a8f3 Merge pull request #1633 from JDWarner/fix_travis_networkx
new 1303317 BUG: fix one additional location where ndimage mode conversion was needed
new beff4d5 DOC: update TODO.txt to mention eventual removal of _mode_deprecations
new 9d3bb8f Merge pull request #1634 from JDWarner/imsave_no_squeeze
new 49b4f69 MAINT: remove unused import
new d4641a4 Improve documentation of moments functions
new 3959ce3 Merge pull request #1636 from ahojnnes/moments
new 236aa20 Merge pull request #1583 from grlee77/fix_interp_modes
new ec64872 Some doc string fixes for recently merged code
new 46cbff8 Merge pull request #1638 from ahojnnes/doc-fixes
new 8cb409b Add alpha layer support to gray2rgb
new 13b2170 Merge pull request #1639 from stefanv/gray2rgb_alpha
new 9fa408a Add utility to rename functions
new e084c5f Rename nl_means_denoising to denoise_nl_means
new 7196317 Fix link to numpy docs convention
new 32e6aa1 Fixed typo in docs README
new 955b176 Add documantation to `denoise_bilateral` for `sigma_range`
new f71cc06 Merge pull request #1657 from robintw/doc-readme-typo
new 239574a Remove ticks, add titles and reverse color such that contours are visible
new ff4e3bd Raise an error for negative sigma values in guassian_filter.
new 50804d1 Correct documentation to `denoise_bilateral` for `sigma_range`
new 7c8caac Merge pull request #1656 from cgilon/contribute-docs-fix-link
new c05108d Replace a doc test with some regular unit tests.
new 5f5af64 Example for hough_circle
new 31f44f4 Switched lena for astronaut
new d9dbe6f Merge pull request #1658 from Guanaco77/master
new a0fc75c Don't use two lines to raise an exception with a short message.
new 6e6d243 Use assert_raises instead of @raises.
new 26d427b Removed ticks
new 76285f5 add exemple to denoise_bilateral() in docstring
new 544fb95 typo
new d395d0c Rescale intensity to enhance image output
new ddf122f Merge pull request #1666 from rougier/convex_hull_example
new 3c41e75 Added whitespace to comply with pep8
new 002fc70 Shorter hough_circle example
new b5fd7bc Fixed forgotten output for docstring example
new cd9a260 add gamma correction example
new dafa3d7 The edge filter example contains all implemented filters apart from the Prewitt filter. Added the Prewitt filter to the example and compared it to the Scharr filter showing that Prewitt is even less rotationally invarient than the Sobel filter. Also added description.
new 2a6e7ff Replace cubehelix with the viridis colormap in the RAG drawing example
new 014ba26 add gamma correction example
new a5af3a6 Updated the explanation of the watershed markers example. This fixes issue #1650
new f63d942 Grammatical error/typo fixed
new 2a0f290 fixed another typo
new b29ad8e Added quantile_threshold option to canny edge detection
new 5bd900f Merge pull request #2 from dpshelio/watershed_markes
new 38d8e9f Import viridis from skimage.util.colormap.
new c991403 add entropy example
new 8ad487e Split comment into two rows
new 64f8d44 Titles of the plots for the wathershed example not seeing for the margins of the plot.
new 81ba4db Split comment into two lines
new d699609 Merge pull request #1675 from dpshelio/titles
new e9cf402 Remove ticks, add titles and reverse color such that contours are visible
new b459107 Switched lena for astronaut
new 1bc1688 Rescale intensity to enhance image output
new 21f655e Merge branch 'gallery-cleaning' of github.com:rougier/scikit-image into gallery-cleaning
new ae17d88 Merge pull request #1673 from oew1v07/watershed_markers
new f8afc07 pep8
new 35341be merge entropy examples+add description
new 5f0665c Raise ValueError if quantile thresholds outside of [0, 1] - and updated docs
new f9887e6 Added test for invalid quantile inputs
new 05729ac Merge pull request #1660 from jwiggins/issue-1586
new 9f878af Renamed keyword arg to use_quantiles
new fa9e000 Merge pull request #1631 from stefanv/rename_denoise_nl_means
new 98bf488 Fixed indentation
new 6c421cd Fix style (pep8)
new 01f5fc4 Merge pull request #1663 from juliusbierk/hough-circle-example
new b630f54 Merge pull request #1671 from jwiggins/fix-cubehelix-ref
new 069c575 Merge pull request #1659 from rougier/gallery-cleaning
new 84ac538 [ENH] Fixed some PEP8 issues in example gallery.
new 05e6c0c Fix some things on Travis
new 29fd286 hough_circle radius accepts scalars and lists
new 9a4a3c6 test and docstring update for hough_circle
new 8c5ce85 assert equal scalar, seqeunce output of hough circle
new e79a0a2 Added pep8 spaces
new 4ca1f49 fix scikit-image bug #1680 (grayscale png round trip fails) and add unit test
new 5cf7a20 Fixed tests to use assertRaises as a function not a context manager
new 27730d1 Added make.bat file for building docs on Windows
new 9ea085f Added new functionality to remove small holes from images.
new 9bfbcfc Removed extraneous print statement
new 28a4fcd fix permissions issue in test_pil.py function test_png_round_trip()
new b2a2632 [DOC] add favicon
new 646c210 Added active contour model
new ad4948a pep8 compliance
new a5ba186 Added new _supported_types function and new line at end
new 7c30f36 Active contour example added
new 8a5cc80 Revert pip cache changes. Use pip's built-in retry.
new 96847f2 pep8 and other small changes
new fa68154 spelling corrections and misc.
new 94b335f change test names
new 7b5d82d Merge pull request #1688 from robintw/add-make-bat-for-docs
new 0ff4b8f Merge pull request #1687 from connellybarnes/master
new 0e46d2c Make sure the pip in the virtualenv is upgraded.
new b91f6ac Remove imread from the optional requirements for 2.7
new 3bdab63 Show only Scharr filter result, removed plots of Sobel and Prewitt filter results. Reworked corresponding paragraph.
new b21f01d Merge pull request #1684 from juliusbierk/hough-circle-input
new f5e4a5e remove import/blank lines
new f0d2015 fix >80 linelength
new 09c724c Merge pull request #1674 from robintw/canny-percentile-thresholds
new 7046df9 typos
new ca5de50 Enforce integral type for label images
new ec62b2c Merge pull request #1694 from ahojnnes/regionprops-dtype
new 865b8e4 Merge pull request #1683 from jwiggins/travis-tweaks
new 0f0fa82 added variables to Makefile for build time configuration
new a664043 Merge pull request #1667 from odebeir/sprint_euroscipy2015_denoise
new 260e013 Add a plugin and test for imageio
new e49bc01 Update the dev notes
new 40a30e6 Remove unnecessary import
new 605ab95 Add imageio to optional reqs
new 8d04db3 Do not try optional dependencies on Py3.2
new 39d069f More cleanup of installation
new f504083 Fix travis script syntax
new 0fed219 fix entropy example doc, fix figure syntax
new c9cc47a typo
new f64fb76 Merge pull request #1695 from MartinSavc/adding_makefile_params
new cf84333 Merge pull request #1670 from odebeir/sprint_example_gamma
new b7c0607 Merge pull request #1681 from emmanuelle/fix_pep8_gallery
new 473a666 Merge pull request #1575 from blink1073/imageio-plugin
new 6e39dbb Add dev docs push on master builds
new 73b540c Add the deploy_docs script
new 8d344d0 Active contour updates. Now works with scipy<0.14
new e224b0d Enable ccache on Travis
new 9e4d0ee Merge pull request #1672 from tv3141/add_prewitt_filter_to_example
new 8721bee Attempt to cache the sphinx-build intermediates on Travis.
new d29c97f Fix the SPHINXBUILD define for Travis
new ba1d2ee Fix document build error with new notebook package
new 9887701 Allow polygon to take a list or tuple and add a test
new 99ff47a Merge pull request #1701 from blink1073/fix-draw-polygon-1700
new ea6cb11 Merge pull request #1697 from blink1073/deploy-docs
new 6094be0 [DOC] use favicon generated from skimage-branding
new abd0f48 Correct the docs build on Travis
new 33646e0 Merge pull request #1690 from sciunto/favicon
new dc394ab Try again with the sphinx build on Travis.
new 16e15c0 Fix doc build and add instructions
new 97ff357 Make sure sphinx is installed before building the docs on Travis
new 86542c5 English corrections in entropy example
new 7e4c1d2 Allow a cache directory to be passed to the docs Makefile
new 5c20ef7 pep8 and py3 compliance. more comments
new 8c53663 DOC : add ref to nlmeans
new a445dda Put the docs build command on a single line.
new 4fe753f Use the current python version for the python intersphinx reference
new 8c2d8e8 Remove sphinx from the optional dependencies
new 3345e95 Merge pull request #1699 from jwiggins/use-ccache
new 04fb2e3 FIX: Point Windows batch file at source subdir.
new 0372cb4 Merge pull request #1708 from JDWarner/fix_win_doc_build
new da3da0b Add api docs and gallery on Windows build and build docs on Appveyor
new d2c4ccb Build from the right directory and add api to latex command
new 634737c Add the make target
new f20e2c3 Fix PYTHON executable and html script
new b910120 Add a 64bit python 3.4 build
new d8e4774 Use the latest pip on appveyor
new 30af111 Fix pip upgrade
new 5f729fa Try a 64bit 2.7 build
new ade8286 Fix yml format
new f2b15de Revert to single build
new 31dd5f4 Merge pull request #1702 from blink1073/fix-doc-build
new 20b03b1 Merge pull request #1709 from blink1073/windows-docs
new b1c1bdf DOC: activate favicon in config
new 341039f DOC: favicon path relative to source/
new 7e15025 MAINT: remove check for TRAVIS_PULL_REQUEST (never false)
new c7597d6 Changed function name to _check_dtype_supported
new 08f0677 Merge pull request #1710 from sciunto/favicon
new 82ad2a7 Fix variable check
new f6b03f4 Merge pull request #1711 from blink1073/docs-push-again
new 4c34566 gh-pages is the default target branch
new e57cce5 Merge pull request #1713 from blink1073/docs-fix-take-3
new 0fee62f Update token
new 2c15382 Merge pull request #1715 from blink1073/docs-build-token
new 6f8cfc7 Try with debug output
new 5f27db9 Merge pull request #1716 from blink1073/docs-build-again
new c155904 DOC: fix env variable GH_TOCKEN
new 67b89e6 Merge pull request #1717 from sciunto/doctravis
new e1c57be Encrypt token for target repo
new 87dfaf3 Fix variable name
new e316711 Another fix
new b272785 Fix variable name
new 2063dd1 Merge pull request #1719 from blink1073/another-docs-build
new 252cf8b Try with a token encrypted in this repo
new d661361 Merge pull request #1720 from blink1073/another-token-attempt
new 42784a4 DOC fix broken url
new 9ac63b3 Merge pull request #1721 from sciunto/fixurl
new 05d0202 Add notes on how to deploy docs on Travis
new 4e21f5d Merge pull request #1722 from blink1073/add-doc-deploy-notes
new 1458836 MAINT: use with to close the file
new 9371ae7 Merge pull request #1724 from sciunto/unclosedfile
new 811f13c MAINT: use with to close the file
new 953fbfc Merge pull request #1725 from sciunto/unclosedfile
new e822e5a DOC : add ref to nlmeans in the API
new 3f735b6 Changed the test file to use expected warnings.
new a3bb940 Moved the comments on labeled arrays to notes section
new 413ac4a Altered doctests to correct spacing
new 19fbdfb Adjusted white space for doctests
new 5c7c67d Made changes to doctests
new 9025c02 Adjusting spacing of array in doctests
new 0d9987e Test against Python 3.5 on Travis
new 730297d Use Dask 0.7.1 on Python 3.2
new 811b689 Refactoring ```skimage.filters.gabor_filter``` to ```skimage.filters.gabor``` Refactoring ```skimage.filters.gaussian_filter``` to ```skimage.filters.gaussian```
new 7254c1e Fix output type of peak_local_max
new 0bae5f9 Adding Alias and Deprecation Warning
new d66babe Merge pull request #1741 from escorciav/peak-local-max-output-type
new 4ccf778 Remove 3.2 from travis build
new 844b8b9 Merge pull request #1738 from blink1073/test-3.5
new e7b6761 Move tiff-file handling to top level
new d7a648a Pop the img_num keyword if given
new 1547ec3 Remove the tifffile save tests from test_pil
new 1dae599 Remove another tiff check in test_pil
new 387cbda Merge pull request #1744 from blink1073/always-use-tiff
new bfba746 Adapting Edited Files to comply with PEP8 Standards
new 815c5c8 Added new line
new 07775b6 Merge branch 'remove_small_holes' of https://github.com/oew1v07/scikit-image into remove_small_holes Need to merge with work completed elsewhere
new 2045c44 Removed trailing whitespace
new a2d74e5 Merge pull request #1421 from hohlraum/hough_fix
new d43351c Import fail if python is runned with -OO
new bf9eb6c Update __init__.py
new 681be3f adding shared axes to examples with multiple plots
new 8ff6d2d changed adjustable parameter of axes to 'box-forced' this fixes the size of axes around an image for shared axes
new 9fa9c03 adding axes sharing to displays of related images for better interaction
new bb081eb added sharex, sharey and adjustable parameters to subplots
new ada92ae replaced subplots with individual subplot calls share axes for the related images in subplost 221 and 223
new e7f5dff added parameters for axes sharing to plt.subplots
new c65b095 added parameters for axes sharing to plt.subplots
new d42b06e changed subplot creation to preferred matplotlib style
new 0ffa831 changed subplot creation to preferred matplotlib style
new f8e632c changed subplot creation to preferred matplotlib style
new 629d6d6 changed subplot creation to preferred matplotlib style
new be39c35 changed subplot creation to preferred matplotlib style
new 4e364c6 reverted subplot creation to preferred matplotlib style
new 605a027 DOC: test piwik with piwik.sciunto.org
new 4816d2e Refine docstring for 'compactness' kwarg in SLIC
new 7212fe3 Replace semicolon with full stop
new 41159f3 Fix adapthist mask logic
new dba355d Merge pull request #1753 from blink1073/fix-numpy1.10
new 85d5e7c Merge pull request #1734 from sumitbinnani/RenamingFilter
new 3c3a636 Merge pull request #1750 from jni/slic-param-scan
new 3dc3771 DOC: test piwik with piwik.sciunto.org
new a93f302 Ensure gallery pages are always generated
new 159c9f4 TST/STY: Hough tf regression test & Cython wrappers
new d776464 Merge pull request #1756 from stefanv/doc_with_gallery
new a335619 TSTFIX: Fix imports in hough_ellipse doctest
new aabf2de Prevent infinite loop in adapthist for low clip_limit
new 0a48c32 Merge pull request #1758 from JDWarner/hough_test
new eb2a231 Merge pull request #1762 from blink1073/fix-clip-histogram
new 5d209a6 Added the Laplacian operator
new 41875cf Generalize Laplce operator + testing Reuse the function skimage.restoration.uft.laplacian() to create the kernel Improve the testing for a specific case
new ed55226 Correct bug inside the test
new 33f7fb9 Merge pull request #1763 from glemaitre/laplace-edge-detector-wrapper
new 55e12b6 py3 fixes and skip test for old scipy.
new 61a78d6 Fix setup.py in the presence of no numpy
new 7284361 Merge pull request #1766 from blink1073/fix-setup
new 6f1ec34 Fixed missing scipy import
new 856e199 Merge pull request #1704 from MartinSavc/example_subplots_share_axes
new d187840 Merge pull request #1746 from sciunto/piwik
new 52594d0 Only iterate over available region properties
new 851b1be Fixed correct_mesh_orientation for when spacing!=(1,1,1).
new ba68306 Remove dict comprehension for Python 2.6 compatibility
new 157fef3 Added label vs. intensity shape checking to regionprops
new 87adb53 Changed to scikit-image preferred syntax
new ff082d2 BUG: Buffer dtype mismatch, expected 'Py_ssize_t' but got 'long'
new d8213fe BUG: Buffer dtype mismatch in _seam_carving.pyx
new aadb2cd MNT: Remove never attained return case under gray2rgb
new bb3bd34 TST: Aseert check values for older test_gray2rgb case
new 0d1c7ea Merge pull request #1785 from pratapvardhan/colordir
new 1a598be Fix region props deprecation problem with label function
new 3437eb8 Fix deprecated filter module import
new 1278b02 Fix circular import between regionprops and convex_hull_image
new 6e644c4 Remove single author from header, fix typo
new a63b746 Move import test to top of function and import outside of function
new 6638c92 fixed error language
new 015c57c Merge pull request #1689 from oew1v07/remove_small_holes
new 9d3a7b4 Remove redundant type conversion
new ba3c0c0 Fix circular import loop
new 3b52598 Merge pull request #1787 from ahojnnes/rpropsfix
new ea33891 Skip doctest
new 5aabc19 uses fftconvolve instead of convolve2d
new a606a53 Adding LineModel3D for RANSAC, unit test and example.
new 320977c Fixed doctest problem
new c1c0d18 reformatting code to wrap at 80 characters per line
new 5bb2062 fixed typo and added blank line
new 428db53 added support for boolean types in segementation
new bf46532 Merge pull request #1794 from kshitij10496/boundaries-bool
new 040a534 Merged LineModel3D with LineModel in order to form a unified model.
new 6a2961f we now have the old LineModel with params (dist, theta), and the new LineModelND with params (origin, direction).
new 61b7c20 cleaned tests and documentation, added deprecation note in doc for LineModel.
new 6f9a55c added deprecation warning for LineModel and added note in TODO.txt
new c1722d8 Moved range_rows_start/stop and range_colums_start/stop to hog_histograms
new 8b7920e Fix an error in the centre calculation
new 9048a20 Fix an error in the centre calculation
new 2adab15 Reapplying the changes that got reverted
new c095daa Added unit test to check correct output of HOG on Lena grayscale image, and added feature_vector parameter to disable the .ravel() call on the result.
new bc7e958 Merge pull request #1676 from odebeir/sprint_add_entropy_example
new 0e38481 Improvements to entropy example
new 4bc1c58 Add local geometric mean filter Add the filter in cython with a specific kernnel. The implementatio is based on the log-average method. The test were added the npz.
new 3a2acb2 Update the documentation with spelling error
new 54043de Change the import of round function to be compatible with visual studio compiler
new 0c1fc76 Update the reference
new 0bdf425 documentation updates; added "3D" to example title
new 99484e3 Merge pull request #1795 from kevin-keraudren/ransac-linemodel3D
new a1d162a Use more common syntax to assign axis variables
new 198ce02 Merge pull request #1764 from glemaitre/geometric_mean
new 07f18c6 Merge pull request #1797 from ahojnnes/entr-ex
new e6c60ca fixed typos in seam carving example.
new a0c5270 text improvement in seam carving example.
new bed6f60 small text improvement in seam carving example
new f88694e Fix LineModelND test cases
new 50f2a0b Create helper function to compute norm along axis
new 817b090 text improvement in seam carving example, added some newlines between plt.imshow() and """PLOT2RST"""
new 219d08a Fix errant docstring
new e72908c Merge pull request #1800 from blink1073/fix-docs
new f25b46c Merge pull request #1799 from ahojnnes/linemodelnd
new 8c08a4d Merge pull request #1798 from kevin-keraudren/seamcarving-typos
new 6f016c9 Merge pull request #1771 from noahtreb/fix-correct_mesh_orientation
new 2972506 Guarantee correct mesh orientation from marching cubes
new abfa856 Merge branch 'master' of git://github.com/scikit-image/scikit-image
new 12c1739 BUX: in _slic.pyx slice can has steps=None
new bb64e8c Added test for slic segmentation: case where more segments than pixels are asked for.
new bff2ce0 Missing line
new 443f4cc DOC: Correct docstring to correctly reflect defaults
new 4eb4dcd Merge pull request #1805 from jni/fix_slic
new c133d5f Merge pull request #1803 from JDWarner/mesh_orientation_cleanup
new 1a05b13 Merge pull request #1449 from stefanv/clear_border_non_binary
new 966e0fd Merge pull request #1770 from stefanv/list_regionprops
new 1455874 Documented required version of sphinx
new 5000449 Fixed broken sphinx link
new ba361ea Merge pull request #1811 from emmanuelle/sphinx
new 1be8336 adds decision when to use fftconvolve/convolve2d
new a16c530 Some minor PEP8 issues
new 4b6db64 Fix matplotlib backend
new 2aab431 Remove debug print
new a8b9177 Merge pull request #1812 from blink1073/matplotlib-debug
new d8c7160 Merge pull request #1 from emmanuelle/active-contour
new 15d09f9 Avoids crash of active contour example when run with old scipy version
new fb9e9e6 Merge pull request #2 from emmanuelle/active-contour-model
new f8d19ae Allow 64bit integer conversions and direct downcast
new a6f4419 Update failing tests
new be7161d Add debug print
new f396588 Fix failing test
new 4e00d45 Improve warning message
new 5eaf201 Merge pull request #953 from syedTabish/Issue949
new 8b0d511 Merge pull request #1818 from blink1073/improve_downcast
new 3f3b705 fixes import, tuple addition
new 9c37e8e Move the doc build readme to contributing.txt
new 683ecde Start deprecation of python 2.6
new 91d3e81 Merge pull request #1820 from blink1073/deprecate-2.6
new 827e4b1 Merge pull request #1819 from blink1073/doc-building-docs
new 3fd4709 adds comment explaining time_ratio decision
new 38b1880 Update docstring comments for integrate function
new 458dc15 Add deprecation warning for old syntax for integrate()
new 74f8ae1 Add note in TODO for deprecated use of integrate()
new 5df9e0c Update incorrect version number in docstring
new c7243e7 Allow passing individual coordinate tuples to integrate
new 3899c57 Test individual coordinates for integrate in doctest
new 0bc3ad8 Restore vectorised integrate deprecated behaviour
new cc24efb DOC : change sneaky unicode in the endash
new 5b8fd77 Merge pull request #1691 from juliusbierk/active-contour-model
new 4d6c9e7 now N dimensional, changes constant, cleans and comments
new 2892e90 removes paren
new a9b4e78 Disable pyamg on Travis until #1788 is closed
new b0301a2 Add preliminary mailmap and tool to generate it
new d99f218 Merge pull request #1824 from stefanv/travis_pyamg
new 7aa680c Merge pull request #1768 from stefanv/mailmap
new 8be8598 Re-enable pyamg, since release 3.0.2 closes #1788
new 084ad3c Merge pull request #1821 from jni/integral-image-fixes
new 477f396 Merge pull request #1825 from stefanv/travis_pyamg
new 975d1a4 Merge pull request #1792 from scottsievert/fftconvolve
new 97f3ad1 NetworkX is required so remove optional import
new c3d52d6 Simplify reference to generate_binary_structure
new e9c4c87 Make RAG generic, requiring only label_image
new d5819f6 Add tests for generic RAG construction
new 49aa7cf Fix typo in variable name
new 53d3154 Use a strided 1-element array as dummy filter out
new 4deeb1f Move max_id logic to top of RAG constructor
new 5e848f5 Auto-generate _RegionProps property docstrings
new 024dd34 Clean up style and PEP8
new bf5ba45 Fix doc setting for Python 2.x
new 4aa08fe Simplify cache
new 86052d6 Merge pull request #1815 from stefanv/regionprops_cached_decorator
new 5c03f2a Bug: not all edges found by asymmetric footprint
new 74a015d radon transform: when circle=True, ignore values outside circle without throwing an error (closes #1808)
new 2f3bc7f Merge pull request #1828 from stefanv/radon_circle_warn
new 6b908c1 BUG: io: imread in the PIL plugin drops indexed PNG alpha channel.
new 3251d3c BLD: Increase the minimum pillow version to 2.1.0.
new 0618671 Update outdated docstring of _add_edge_filter
new fb99e3c styles code (no more functions, less lines)
new 8f0c5ab Merge pull request #1790 from WarrenWeckesser/imread-indexed-png-alpha
new 14095de Merge pull request #1830 from scottsievert/fftconvolve
new 55f5103 Added sections to gallery of examples
new 9e3b87c Merge pull request #1823 from emmanuelle/structure-gallery
new f0eec46 Merge pull request #1783 from ivoflipse/fix_hog
new b68deca Thickened contours so that they are more visible in gallery thumbnail.
new 8758e2f Moved active contours example in edges section
new d003f70 Merge pull request #1834 from emmanuelle/active_contour_example
new a4d0ac8 Merge pull request #1603 from michaelpacer/draw_coords
new ea9ed9c Merge pull request #1826 from jni/rag-generic
new 39e1bb9 Lower required matplotlib version on 2.6 test
new f46a7e0 Merge pull request #1841 from blink1073/fix-matplotlib-2.6
new e102011 Specify 2D images in denoise bilateral docstring
new d6105a0 Merge pull request #1782 from pratapvardhan/clncython
new a56c607 Corrected bug in the computation of the Euler characteristic.
new d62524f Mentioned Euler characteristic (instead of Euler number) in docstring of regionprops.
new f143f4b Change default weight for denoise_tv_chambolle to a value that is reasonable for float images scaled to the [0, 1] range
new 3f5aa73 Update tests to also use reasonable weights for TV denoising
new fb9fdec Merge pull request #1845 from grlee77/tv_weight_fix
new af95784 Solving white space + improving code +PEP8
new c5f9fff Merge pull request #1844 from emmanuelle/fix_euler
new 4509338 Merge pull request #1777 from stevendbrown/rp_intensity_check
new 4a07a3c Merge pull request #1810 from alexandrejaguar/master
new 0b61b8f Removed deprecated label function from morphology module in preparation for 0.12 release.
new 227211f DOC: Small one. The input to this one needs to be 2D.
new 436d0e8 TST: Test error handling in convex_hull, convex_hull_object.
new cc8c3b7 Merge pull request #1847 from emmanuelle/remove_label_from_morphology
new 9fb5f13 TST: Test both functions(!).
new 9b9473c STY: Fix formatting and use tight_layout in doc examples.
new 6740ef9 Merge pull request #1842 from jni/1840
new d4b3aee Merge pull request #1846 from arokem/hull-docs
new 98d2446 Merge pull request #1806 from JDWarner/sphinx_formatting
new 18a2747 DOC: plot_edge_modes improvement, closes #1816
new f3392bc Merge pull request #1848 from soupault/doc_edge_modes
new 1f3721f ENH: Inpainting with biharmonic equation
new dc05d56 DOC: Added gallery example for inpainting
new add5b8b FIX/TST: Fixed bug with defected bounding frame, added testcase
new 92f3114 FIX: Fixed test for biharmonic in accordance to new kernel for edges
new 0e6e08d TST: Attempt to fix Travis bug with old packages
new 1181c0d DOC: Moved references to common docstring
new 2fcf2ea ENH: Added support for multichannel arrays, fixed float scale to [0;1]
new 0cc4402 DOC: Fixed docstring, moved to assert_nD
new e1751f9 Some PEP8 in test module
new 0359284 Modified some methods in _RegionProperties class to make them dimension-agnostic. Removed the NotImplementedError for 3-D images in regionprops function.
new d8cc148 Replace individual errors by 2D decorator
new 9317b7b Make area a cached property; use np.sum
new f2f698b DOC: Moved gallery example to category
new add3352 Euler number is only2d
new fab4265 Removed @property decorator, that made _install_properties_doc crash
new 76ad56f contribs.py: fixed the case of empty string
new 0d73999 Allow axes to be provided to imshow and fix colorbar
new b4793ca Remove debug message
new e528d47 FIX: Move a argument check to avoid leaking malloc'd arrays.
new 13c4f3c Execute contribs.py in travis_script.sh
new f345291 Mentioned 2.6 hack for contribs.py in TODO.txt
new 99871d7 Merge pull request #1849 from emmanuelle/fix_contribs
new 72f5421 Use np.empty() instead of malloc/free in _denoise_bilateral.
new 6c9325a Minor fixes: errant indent, functools.wraps and python3 style
new 2e812e0 Merge pull request #1505 from emmanuelle/regionprops3d
new 8978463 ENH: Massively reworked code to enable nD-support
new 732df5f Merge pull request #1850 from jwiggins/fix/potential-bilateral-leak
new 33a2182 Merge pull request #1705 from deledalle/ref_nlmeans
new 8f2839e Merge pull request #1747 from JGoutin/OptimizeLevel2Compilation-patch
new 514526a Merge branch 'master' of git://github.com/scikit-image/scikit-image
new 1769cdd added boundary rag construction
new 3cf6c8b removed unnecessary statement
new caba304 indentation correction
new 4041fc6 corrected colors import
new 4c05e65 changed logic to use erosion/dilation
new a95c0bd passing selem argument
new e8f2805 changed to eosion/dilation logic
new 422dfc6 cleanup
new a5f6db5 doc example
new ea18fcb use as strided
new a4a4063 moved example file
new 772d1cc changed colormap to jet
new def8ca7 change mcap to viridis
new c6c8ff9 Add deprecation warning to 'data.lena()'
new f9dfa1d Make mean boundary RAG testing more robust
new 30145ab Use function to update graph edges from CSR
new 802214d Hold pixel count in mean boundary RAG edges
new 79c9637 Merge pull request #1 from jni/edge-rag-fixup
new 753c8ca correct variable name mistake
new 22bf68d removed failing doctest line
new 9c93816 Merge pull request #1495 from vighneshbirodkar/edge_rag
new be993d4 Merge branch 'master' of git://github.com/scikit-image/scikit-image
new 49eb2f3 Suggest 'skimage.data.astronaut' as alternative test image
new 2487681 Merge pull request #1866 from sergiopasra/deprecate-lena
new f034081 Document the input image type
new 421ef45 Use astronaut image instead of lena in test_hog.py
new 296438d Raise a warning if the image is not grayscale
new a2d75de Add expected_warnings to the tests using threshold_otsu
new 893d937 ENH: Moved nested functions, refactor code
new 98fec52 FIX: Returned handle for empty input arrays
new b4bf4ed Fix circular mask example in the user_guide
new 3ae2f12 TST, DOC: Added test for 3D spatial data, cleaned up gallery example
new f08ddcd Merge pull request #1880 from OrkoHunter/fix_doc
new b7fa0ac Merge pull request #1876 from OrkoHunter/threshold_otsu_grayscale
new e53d7da Merge pull request #1804 from soupault/inpainting
new f2d9cf4 Merge pull request #1877 from OrkoHunter/test_hog_lena_deprecate
new f1abc51 DOC: Added credits for #1804
new 9050a52 Merge pull request #1883 from soupault/credits_pr1804
new a7bcee2 Update plugins doc page
new ce4bc59 Merge pull request #1885 from OrkoHunter/find_available_plugins
new 3edce08 Fix rotation with resizing and custom center
new 6fd0cec Fix Gaussian kernels in hessian_matrix
new 795a9f6 Do not use lena in test_brief.py
new a4ceabb Remove use of lena in test_corner.py
new c41376c Remove test_otsu_lena_image
new 93d68d8 Merge pull request #1893 from OrkoHunter/test_thresholding_lena
new 2fafef1 Merge pull request #1892 from OrkoHunter/test_corner_lena
new 699c345 Merge pull request #1891 from OrkoHunter/test_brief_lena
new 7222d1f Fix hessian_matrix doctest
new dfc6b3a Merge pull request #1888 from ahojnnes/hessian-matrix-fix
new b9c9513 Merge pull request #1887 from ahojnnes/rot-fix
new 2d326a4 ENH: n-dimensional refactor of TV denoising.
new c2b86d8 fix numpy 1.6 compatibility
new 4a0ad77 update tests for denoise_tv_chambolle
new 4bc4f0a remove try/except in _denoise_chambolle_nd. just use the numpy 1.6 compatible case
new 4a8a218 use Fortran order for g and p in _denoise_chambolle_nd to avoid a performance regression
new 9f41902 Switch _denoise_tv_chambolle to use C-ordering
new dd5a708 minor bugfix so that weight gives a consistent amount of smoothing regardless of the number of dimensions.
new e6a1a19 update default weight to reflect the bugfix from hardcoded 0.5 to 1/(2*ndim)
new a30592a MAINT: explicitly specify axis argument
new e2f874e draw: Add alpha ability to set_color
new 7313567 Draw daisy features using anti-aliasing (closes #1665)
new ee38b92 ENH: Add some simple image comparison metrics: PSNR and NRMSE
new ef3896d add new metrics to API
new 69e73ea TST: add tests for nrmse, psnr
new cfb9c76 TST: fix broken test
new 53742be fix axis bug in multichannel case and add a corresponding test
new f7d18a5 Replace normalise kwarg in hog with transform_sqrt
new 3ec4155 Modify tests for hog after renaming kwarg normalise
new 0b28510 Use astronaut instead of lena in test_match
new 2d20d4a Merge pull request #1901 from OrkoHunter/test_match_fix_lena
new 28f19d3 Raise error when single colored image is passed in threshold_otsu method
new 682f089 TST: add test for constent TV weighting across number of image dimensions for Chambolle algorithm
new 72607ca update NRMSE docstrings and include run_module_suite in the corresponding test file
new d199ab2 Merge pull request #1839 from grlee77/nd_denoise_tv
new c8ba77d Clean up implementation
new b9199fe DOC : Add comment for the use of strided output array for generic_filter in RAG
new a237918 Merge pull request #1904 from OrkoHunter/clarify_generic_filter_rag
new d677015 Do not use lena in test_orb
new 1740767 Add test for threshold_otsu on single color image
new 41afd05 Modify threshold_adaptive 1. Improve docstring 2. Raise error for even block_size 3. Test for the ValueError
new e6f66a2 Merge pull request #1902 from OrkoHunter/test_orb_fix_lena
new df18b53 Correct example for threshold_adaptive
new f3a9825 Merge pull request #1903 from OrkoHunter/threshold_otsu_min_color
new aae7f2b Merge pull request #1907 from OrkoHunter/threshold_adaptive_block_size
new a681ccd TST: add test for invalid normalization type in NRMSE
new f4773e3 NRMSE, MSE, PSNR: make sure all inputs are float prior to the calculations.
new a812416 Fix the default dynamic_range in PSNR and warn if inputs don't meet the assumptions made
new acef026 fixed outdated import name _simple_metrics in __init__.py
new ea3ad97 TST: add MSE, NRMSE test that would fail in case of int overflow
new 64f6203 psnr: update dynamic range calculation
new 0f71278 revert simple_metrics to np.float64 computations for all input types
new 772dc48 Simplify alpha vector generation
new 31b6adb Bump numpy requirement to 1.7.2
new 9a522c8 Update contributor's guide: all PRs must get two +1's by core team before merge
new 8483a62 make suggested naming changes in simple_metrics.py
new b8e7740 use dtype=np.float64 in calls to np.mean
new ad51119 Merge pull request #1913 from stefanv/contribute_2plus
new f3771ab Saner defaults for peak_local_max, untested.
new 58283e7 Change default min_distance; improve docstring.
new bd2ecff WIP: fix impl. of peak_local_max, update tests.
new fe9d7c7 Fix coordinate extraction
new 5751b0c Some improvements to the doc string and code formatting
new 3f91290 Fix corner orientations unit test
new 88ee3ce Raise error for invalid min_distance values
new 024c432 Fix corner_peaks doctest
new e74da89 Fix corner_fast doctest
new bbb427b Fix peak_local_max doctest
new dfae40f Change default threshold_abs value to minimum image intensity
new e552002 Fix BRIEF test cases
new 91ed378 Fix bug in exclude_border option
new 4335238 Fix matching test cases
new b1e0597 Raise warning for 3D images in denoise_bilateral
new 63b893d Fix test and doctest for multichannel kwarg in denoise_bilateral
new 114f7f8 Merge pull request #1898 from ahojnnes/anntzer-peak-local-max
new e12df17 Add relative threshold to corner_peaks
new b710bd2 Use a stacklevel of 2 by default for all warnings
new 6170a7e Include the pyx files
new f4483b7 Make warn() more explicit
new e24953c Cleanup the _warnings module
new 371bfad Merge pull request #1915 from ahojnnes/corner-fix
new 4f54b9e Work around limitation in warnings.warn
new 4b2692b Cleanup
new 040d047 More cleanup
new cfc5db7 Add missing space
new 4997fda Raise error when normalise in not none in hog
new 2e16247 Merge pull request #1897 from grlee77/simple_metrics
new a08d75a Merge pull request #1899 from OrkoHunter/hog_normalise
new a3313ab Merge pull request #1916 from blink1073/warn-stacklevel
new da038c4 Debugging appveyor warning
new bbb3513 Add a note about the new warning
new 0aafbaf Add another note about the new warning
new d91aff4 Merge pull request #1817 from blink1073/upgrade-imshow
new 6d103b5 Revert back usage of full_like to support older numpy
new 65a2907 Speedup rgb2gray and return congiguous array
new f4e0370 Make sure rgb2gray output is contiguous
new 0230375 Merge branch 'master' of git://github.com/scikit-image/scikit-image
new 096bf3c DOC: fix for typo
new 4e5c4d3 Fix rgb2grey for alpha channel
new b328ac7 Merge pull request #1919 from ahojnnes/rgb2gray
new 2eb0577 DOC: Change some `jet` colormaps to `gray`
new bbc3799 DOC: Change phase example from `jet` to `rainbow`
new 7d87bb1 use axis off
new 9405daa Merge pull request #1827 from stefanv/daisy_aa_draw
new b218cfd STY: Image comparison functions now share common prefix
new 8cc869e Merge pull request #1920 from sciunto/doc_typo
new 95977c2 Fix deprecation warning in plot_ransac
new fdbd993 Apply PEP8 to plot_adapt_rgb
new 7cf9d7f Fix deprecation warning in equalize_adapthist
new 20e1fcd Fix deprecation warning in plot_active_contours
new e3287c8 Fix warning in plot_gabors_from_astronaut
new a768573 Fix warning in plot_rank_mean
new 976ac85 Fix warning in plot_view_as_blocks
new a28a9d4 Fix warning in plot_swirl
new 9a9f9b2 Improve plot_morphology
new 5e780bb Fix unknown Example section warning
new 3bf2250 Fix unknown Note section warning
new 8c5d30c Fix unknown Properties section warning
new 2441166 Apply PEP8 to plot_circular_elliptical_hough_transform
new 6eea36a Fix test cases for new deprecation behavior
new 045b047 Revert contiguous array conversion
new 10ffe9f Use kwargs for figure config
new 5e8f82b Merge pull request #1918 from ahojnnes/examples
new 4eee2ee Merge pull request #1327 from endolith/patch-1
new ab7f077 FIX: Pass arguments from deprecated function, update examples.
new 90b1886 DOC: Note removal of structural_similarity in TODO.txt
new e6338b7 Merge pull request #1921 from JDWarner/image_comparison_prefix
new 88a269c Add polygon perimiter drawing
new 4907da0 Update notes on algorithm. Switched from Liang-Barsky to Sutherland-Hodgman.
new ad70668 Document output of polygon_area
new 45f8bd2 Fix typos from PR feedback
new 5280cac Avoid matplotlib testing problems on Travis-CI
new 5e906fb Add missing import
new 96e9e77 PEP8 cleanups
new 3218257 Update coordinate convention, inline matplotlib `clip_to_bbox`
new bf7e885 Polygon clipping requires mpl, but it is now a dependency. Remove warning.
new be667e0 Work around end-point duplication bug in Matplotlib
new 41569be With matplotlib dependency raised to 1.3, remove inlined clipping code
new 3cd4d03 ENH: handle tempita templated Cython source files, *.pyx.in
new a39dac7 Use row/column instead of x, y convention
new aa31c3d Up minimal six dependency to work with minimal Matplotlib
new 056028d Merge pull request #1177 from stefanv/polygon_perimiter
new 02d8c6c MAINT: fix test name
new 9fc9eaf DOC: make image smaller for better visu
new 8890ff8 Merge pull request #1925 from sciunto/test_naming
new f4cbcf2 BLD: use default encoding
new f6f0f7e First version of release notes for 0.12
new 5bf6746 Minor change in order of contributors
new 17b43da Correction in release notes (wrong section)
new da89e26 Merge pull request #1930 from emmanuelle/release_notes
new 00fd6f4 Merge pull request #1927 from sciunto/doc_inpaint2
new b40d028 Add tests for warnings in denoise_bilateral
new 7014d04 Remove useless multichannel=True kwarg from tests
new 66102ad Merge pull request #1895 from OrkoHunter/denoise_bilateral
new 9d9a4b3 Fix some remaining TODO items
new e82849a Document API changes
new 116ef0d Remove unit tests for deprecated features
new a6e0761 Merge pull request #1936 from ahojnnes/depr
new 45ff200 3D test for register_translation, as required by TODO.txt
new 2217dfc Merge pull request #1942 from emmanuelle/trailing_todo
new 461b06a MAINT: fixes #1652
new dd5a5e5 Merge pull request #1944 from sciunto/temp_file
new ad535ac MAINT: address review comments
new 6614e13 Merge pull request #1924 from ev-br/tempita
new a74878c Updated exclude_border to not use min_distance
new 8f9a9fa Minor update to docstring
new 0873a6f Factor of 2 in remove added (due to footprint)
new d2917a6 Factor of 2 : PEP8 adjustment
new e421cea ENH: start adding a python version of Skeletonize3D code
new a85c9dd MAINT: move new skeletonize3d files to more appropriate places
new 06d5a91 MAINT: skel3d: move computations to cython
new f1176a5 MAINT: skel3d: add static typing to obvious places
new 53f48cb MAINT: skel3d: only allocate and type neighborhood once; switch off
new 32865d2 MAINT: skel3d: statically type index_octants
new c9ed06a MAINT: skel3d: statically type Euler LUT
new 01e1f04 TST: skel3d: add a Bat Cochlea sample from FIJI collections
new b7889b2 MAINT: avoid doing np.sum in the hot loop
new 2f0d0cc MAINT: avoid incrurring np.r_ overhead in is_simple_point
new c60b6b0 MAINT: statically type `img` in toplevel _compute_thin_image
new 6899801 MAINT: skel3d: simplify dealing with 2D images
new 88a9bcc DOC: skel3d: add basic docstrings
new 42ba24d MAINT: skel3d: don't print stuff
new f82dddd MAINT: stop slicing memoryviews in is_simple_point.
new dc6cf19 STY: move main functions to the top of the file
new ecf7445 MAINT: remove decorators which have no effect anyway
new 5fa50a6 MAINT: skel3d: prune dead code (eg, is_surface_point)
new 456a525 STY: skel3d: clarify the status of module-level LUTs.
new 85f46c6 MAINT: skel3d: address review comments
new c4c95ae STY: reformat the filling-in of the Euler LUT
new 3bbb766 MAINT: skel3d: rename _skel.pyx to _skel.pyx.in
new de912c4 STY: generate `octree_labeling` routine via tempita at build time
new a07dd7c MAINT: skel3d: minor sty/perf fixes
new 99de447 ENH: skel3d: unroll and inline `index_octants` into is_euler_invariant
new 212c3d1 BLD: add the extension to bento.info, fix names
new 27b5dbc MAINT: skel3d: address review comments
new 87541b6 BLD: skel3d: eradicate stray unicode symbols from source files
new 304660d BLD: bump the cython version to 0.23.4 on Travis
new 42d4eb6 TST: skel3d: add more tests
new 81d4732 DOC: spell out the names of [Lee94], add the Notes section
new 9648d71 MAINT: skel3d: do not copy more than necessary
new 64bb177 TST: inline a two-hole image
new d832739 TST: skel3d: remove 2D test images
new dc702a8 TST: skel3d: redo 3D test images
new 2bc8538 MAINT: address review comments
new ba328e7 MAINT: address review comments
new fc70f73 STY: more tweaks in response to review comments
new 4415098 WIP
new 5e6c98a Added backwards compatibility for `exclude_border`
new 926af0f BUG: fix the conversion from .pyx.in to .pyx files
new a5a771a Modified label function so that background pixels are labeled with 0, and background=0 by default.
new 1ab275e Merge pull request #1923 from ev-br/skel3d
new b5efe5e Merge pull request #1956 from emmanuelle/label_zero
new dc9c887 Raise at least one error for parallel tests.
new 25d15c6 Updated default value to be backwards compatible
new 7b23b83 Updated test_peak for new exclude_border
new c0e3dcc Reverted tests to boolean exclude_border
new 20d4e7d Finally fixed issue:
new 488866c Added additional tests of exclude_border values
new 4244bb1 Fix: missing colon on additional tests of exclude_border values
new 5457b94 Merge pull request #1951 from jmetz/update_peak_local_max_exclude_border
new 7f5b932 Update docstring for profile_line
new f6618ef Clean up profile-line docstring
new 7a2c80e Fix spacing for inline comments
new 14852f4 Merge pull request #1960 from sdsingh/profile_line
new 7f03d97 Bump Cython version to 0.23 in DEPENDS.txt
new ce4a68f Solving space convex_hull + fixing local_otsu
new 0d7289e Merge pull request #1972 from jni/bump-cython
new 3ffca2f Extend plugins with `imshow_collection`
new a8057ed Add `reset` and `compare` to novice module
new 453efe9 Ensure array data is always uint8
new 9e9207c Catch known Matplotlib warnings
new 7caf88f Fix assertion in novice test for older numpy versions
new 9f3fc73 sigma_range is renamed to sigma_color and win_size scales with sigma_spatial
new ecf90e1 Added the chnage to comments
new 428cc3d Casted ceil to int such that win_size is an int.
new deaac9c Merge pull request #1976 from stefanv/mpl_warnings
new 729328e Merge pull request #1905 from stefanv/novice_undo
new 0ccff88 Fix ORB test
new 9e8ba42 Merge pull request #1982 from stefanv/orb_no_of_keypoints
new f069aad Supports skimage_range. Displays deprecated warning when used. Two test cases to test this functionality.
new 010df48 Added deprecated kwargs to TODO.txt
new 16ed4ed Corrected a grammatical error in deprecated message. No functional change.
new edb147d Merge pull request #1970 from alexandrejaguar/master
new 29fa9e3 Merge pull request #1937 from stefanv/test_parallel_fail
new 6fb9bf0 Merge pull request #1981 from pradyumnanpk/bilateral_filter-enhancement
new d5f4f32 Modified bento.info and skimage/__init__.py with 0.12.0
new 50fa219 Updated docversion.js
new 4e3b031 Update v0.12 release instructions.
new 2436199 Merge 'v0.12.x' branch
new d8c18a9 Update version to 0.13dev
new 2c9f512 Bring release notes and API changes in sync
new 8913615 Remove lena image from test suite.
new 78c0abe Fix 2.6 compatibility
new 18da19e Remove left-over mentions in test docstrings of lena
new e1c2ea2 Warn if user tries to build with older Cython version
new 2953a77 Add .in files to source distribution
new ccc35c1 Release v0.12.1
new cc4dbc0 Merge pull request #1986 from stefanv/cython_version_check
new 6ecee1d Merge pull request #1985 from stefanv/remove_lena
new a064e3d Merge branch 'master' into v0.12.x
new c48302d Bring release notes and API changes in sync
new b91bb16 Add .in files to source distribution
new dfffc55 Added inpaint to module init
new 4839ae4 Release version 0.12.2
new caa2d22 Changed docsting sections order
new c6cde6c Merge pull request #1987 from soupault/fix_init_inpaint
new c0a350c Merge remote-tracking branch 'origin/master' into v0.12.x
new feda036 Release 0.12.3
new 3bc54bb Merge tag 'v0.12.3' into debian
new ef771f5 New upstream release: 0.12.3
new 7c875eb Turn dask into an optional dependency
new aa1b9e6 Add back 'import sys' that got dropped during merge
new 2a155cf Update license
new 11745f8 Exclude min.js from source pkg and ignore min.js in diff
new 9d0d8ff debian/control - boosted policy to 3.9.7
new 4e607d6 minor fix to debian/copyright formatting
new ce13fb7 Merge pull request #9 from neurodebian/debian
new 61b6e7d Merge changelogs, fix insecure VCS fields, bump std-version
new 0c39f7d Drop useless XS-testsuite header
new e21abd0 Change email, to avoid NMU bothering
new d07c3a2 Another lintian complain fixed about missing description
new 72c623d Fix copyright issues
new e8fc37a Some other copyright fixes
new c696a3b Update changelog
new af67edd Update maintainer mail address
new ce23eb4 Upstream fix for new sphinx documentation api
new e3b92d0 Merge pull request #10 from LocutusOfBorg/debian
new ff0170e Revert "Upstream fix for new sphinx documentation api"
new 4c62629 Merge pull request #12 from LocutusOfBorg/debian
new 4b450f6 Update debian/copyright
new 0b8664a added patch changeset_6807f4ee8f5501703e447f95701190c836deaae1.diff
new cb86587 New upstream version 0.12.3
new 599cf5d Reinject debian dir after importing upstream source into branch upstream
new 98bbbdd Moved to Debian Science team maintenance
The 8366 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails. The revisions
listed as "adds" were already present in the repository and have only
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