[skimage] annotated tag debian/0.11.0-1 created (now 01b1b3b)
Andreas Tille
tille at debian.org
Fri Dec 23 08:22:11 UTC 2016
This is an automated email from the git hooks/post-receive script.
tille pushed a change to annotated tag debian/0.11.0-1
in repository skimage.
at 01b1b3b (tag)
tagging 7e68e69144ed14636f2598377ee3c59445295ab8 (commit)
replaces debian/0.10.1-2
tagged by Yaroslav Halchenko
on Thu Mar 5 09:52:41 2015 -0500
- Log -----------------------------------------------------------------
skimage Debian release 0.11.0-1
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Adam Feuer (11):
pil_plugin can import and export from memory
added tests for roundtrip export and import
added a space character to trigger travis build
fixed bad indent
improved name of pil import/export functions
reformat comments to be standard format
added Adam Feuer (myself) to contributors file
updated imread parameters comment to standard format
removing trailing space (PEP8 formatting)
explicitly checking for None as per code review feedback
removed trailing blank line in comment
Alexey Buzmakov (1):
Remove endpoints from theta
Alexey Umnov (3):
Fixed ellipse symmetry and added some tests.
Added float conversions for python2.x
Updated CONTRIBUTORS.txt
Almar Klein (2):
Update docs for img_as_ubyte
Update docs in dtype.py: mention scaling of values
Charles Harris (1):
BUG: Fix slicing error revealed by numpy 1.9.0.
Emmanuelle Gouillart (8):
Some additions to the user guide: getting started section +
Minor modifications following review by Johannes
Merge pull request #1119 from ikajic/filter-docu
2-D and 3-D implementation of NL-means denoising
Some improvements of non-local means denoising:
Modified indentation in places (PEP8)
Merge pull request #1244 from ahojnnes/rank-fix
Merge pull request #1306 from stefanv/py3_apigen_fix
Fedor Baart (1):
setup
François Boulogne (17):
add user guide parallelization
Comments of the PR
Stephan's comments
simplify notations
DOC: introduce variable num_peaks for reusability
add shape option to draw functions
MAINT: mutualize function
DOC: enhance docstring
DOC: fix mistake optional flag
DOC: add link to main website + refresh
fix phrasing
DOC: move website and ML to the top
DOC remplace iff by if and only if
DOC: fix typos
DOC: fix typo
PEP8
DOC: add parallelization to tutorials index
Geoffrey French (13):
Fixes a bug in _update_doc in skimage/io/__init__.py that will attempt to compute max of empty list if no plugins are found.
Modified rank filters package so that the _core function in core.pyx outputs to a 3D image, permitting the generation of images with arbitrary size feature vector pixels. Implemented windowed_histogram that generates a windowed histogram of an image.
Fixed some test failures and added a test for windowed_histogram.
Fixed some issues with the new windowed_histogram function in filter.rank.
Fixed Python 3 error in plot_windowed_histogram caused by use of incorrect division operator. Also tweaked the similarity computation a little.
Exchanged array output parameter for pointer and Py_ssize_t in kernel functions for slight speedup.
Improved plot_windowed_histogram doctoring, removed unnecessary imports and removed an internal testing line.
Fixed comment in plot_windowed_histogram.
Docstring and comment improvements and fixes in plot_windowed_histogram.
Small fix to windowed_histogram doctoring.
Fix to skimage.filter.rank.windowed_histogram docstring.
PEP8 compliance and doc formatting fixes.
Fixed mistake in generic.py
Gregory R. Lee (6):
add CheckBox widget to viewer. fix ComboBox widget docstring
added tv_denoise.py viewer example using the CheckBox
fix image scaling in tv_denoise.py example
code formatting fixes
PEP8 formatting
remove outdated comment line
Ivana Kajić (4):
Added docu for gabor_filter. n_stds added to the parameter list.
Added examples for Gabor filters.
Updated Return section.
More detailed docu. Modified examples.
Jacopo (1):
Updated docs for regionprops to reflect the dropping of regions with label value 0
Jasper St. Pierre (1):
transform: Remove some leftovers in __all__
Jeremy Metz (8):
Initial draft of Li thresholding (comments left in)
Cleaned up comments, removed unnecessary vars
Removed nbins input (from use with histogram input)
PEP8 fixes, License file added, tests added
Minor stylistic changes, removed lena test
Moved contribution statement to CONTRIBUTORS.txt
Merge branch 'master' into threshold_li
Minor modification to docstring
Johannes L. Schönberger (1):
Merge pull request #1007 from stefanv/label_refactor
Johannes Schönberger (144):
Move removal of deprated functionality by one version
Set version 0.10
Add 0.10 to docs
Change to http git protocol
Update release instructions for building docs
Fix gh-pages build script
Increase version to 0.11dev
Remove deprecated release instruction
Count number of commits
Merge pull request #1016 from stefanv/doc/depends
Merge pull request #1022 from jni/medial_axis
Merge pull request #1026 from stefanv/bugs/watershed_none_comparison
Merge pull request #1025 from stefanv/compat/painttool_mpl_NoNorm
Merge pull request #1027 from stefanv/maint/ignore_generated_notebooks
Merge pull request #1028 from stefanv/viewer/median_filter
Merge pull request #1024 from stefanv/bugs/qt_pyside_matplotlib_compat
Test negative intensities
Merge pull request #1042 from stefanv/setup_numpy_dependence
Merge pull request #1086 from jni/thresh-iso
Add release note instructions
Describe new release note dev process
Add release notes for upcoming versions
Remove contributors for current release notes
Rename Changes section to API changes
Add intro to release notes
Add release notes template
Fix denoise tests
Fix isodata-thresholding according to Zachary Pincus
Return to old function name threshold_isodata
Account for case when image only contains one unique value
Fix test cases which are now wrong due to previous binning error
Improve test coverage
Fix return value description
Test missed line for coverage
Remove legacy CI config
Merge pull request #1102 from stefanv/bug/freeimage_uint16
Merge pull request #1105 from pmneila/master
Merge pull request #1128 from blink1073/fix-travis
Merge pull request #1109 from blink1073/add-exposure-mask
Speedup moments_central function
Speedup moments function
Make moments functions C functions and reuse centralized moments
Replace pow() with iterative multiplication
Merge pull request #1129 from stefanv/log_leftovers
Merge pull request #1127 from Brittix1023/windowed_histogram
PEP8 fixes and rearranged images in plot
Fix spelling
Replace jet with hot colormap
Merge pull request #1134 from magcius/fix-star-imports
Merge pull request #1135 from stefanv/freeimage_big_endian
Merge pull request #1136 from juliantaylor/signed-char
Merge pull request #1145 from jni/find-contours-docstring
Improve desciption of inverse_map and add option to direclty pass coordinates
Improve inverse_map description
Make warp function N-D compatible, and add example to doc string
Remove deprecated parameter of warp
Highlight fact that warp_coords is only meant for 2(+1)-D images
Make error message for wrong input dim more explicit
Add comments to different conditional paths
Add support for 2(+1)D images and given output_shape for 2D images
Make row, col ordering clearer in doc string
Merge pull request #1150 from blink1073/overlay-blit
Move comments into if scope
Fix indendation of parameter description
Remove legacy parameter
Add option to skip clipping of output, and detect if input float image has negative values
Extend description of clipping behavior
Add test for N-D warping
Use for mgrid for Py26 compatibility
Merge pull request #1156 from alexeyum/ellipse-symmetry
Merge pull request #1155 from atemysemicolon/master
Merge pull request #1159 from blink1073/check-ndims-in-edges
Add option to combine tform with inverse tform
Add option to rotate around specific center
Merge pull request #1169 from stefanv/doc/denoise_opt_param
Merge pull request #1123 from stefanv/pnpoly
Add stop_probability to RANSAC
Add sanity checks for input parameters
Merge pull request #1183 from jni/warn-single-labels
Remove extra space
Fix stop_probability description
Improve description of stop_probability
Refer to rank filters from morphology functions
Add note about supported data types in rank filter replacements
Clarify that uint16 images are only faster up to a certain bit depth
Use correct rank filter replacement function
Add fused type specialization for moments functions
Use uint8 type for simple moments functions
Add encoding header
Add signed edge operators and deprecate unsigned versions
Add deprecation instructions for old unsigned edge map versions
Use new edge operator functions in test cases
Add missing comma
Remove deprecated absolute edge map description
Fix rank filter kernels
Wrap code at 80
Add tests for all rank filters and reformat code
Fix bug in bicubic interpolation and extend test cases to higher orders
Add reference to bicubic interpolation
Make code PEP8 compliant
Fix reference syntax
Fix broken test case, which used black image
Fix bug in get_pixel3d
Fix quadratic interpolation
Use SciPy for second order interpolation, add warnings to buggy functions
Remove broken test case
Misc PEP8 fixes
Merge pull request #1291 from jni/exposure-fix
Check for invalid upsampling block sizes
Add test cases for invalid block sizes
Merge pull request #1295 from stefanv/doc_build_fixes
Improve code style
Make the initialization deterministic
Merge pull request #1298 from pratapvardhan/morph-selem
Expose seed parameter, fix doc string
Set seed for test cases
Merge pull request #1315 from sciunto/ffi
Clip to min and max range of input image, add missing clip parameter to other functions
Introduce parameter to keep range of values
Fix keep_range and add test cases
Create helper function for image conversion
Make sure 1x1 images are 2-D
Remove test for invalid shape
Rename keep_range to preserve_range, fix test cases
Remove __init__.py from tests folder, remove unnecessary load of test image
Fix matching test cases
Fix novice module with new dtype behavior
Use in-place operation for clipping
Add more description to doc string of helper function
Add missing return value description
Use typed memoryviews
Create function to center and normalize image points
Improve conditioning of homography design matrix
Improve conditioning of silimarity transform design matrix
Handle special case of 1 pixel image
Add new parameter to catch exceptions during RANSAC
Disable catch of all warnings, return nan params instead
Fix doc string
Use relative imports in skimage files
Resolve incorrect rebase
Raise Cython dependency to 0.21
Fix invalid relative import
Speedup regionprops
Fix Hessian matrix eigvals
Jonathan Helmus (9):
BUG: segmentation fault when unwrapping 3d image
TST: Unit test to check for 3d unwrap seg fault
BUG: unwrap_phase on compressed masked array
Remove end of line whitespace in test_unwrap.py
unwrap_phase returns masked array when image is masked
No SegFault when unwrapping a 2D fully masked array
No SegFault when unwrapping a 3D fully masked array
image_unwrapped created as ndarray always
Implement appveyor builds
Josh Warner (15):
Merge pull request #1019 from stefanv/build/extra_files
Merge pull request #1069 from jni/nx-depends
Merge pull request #1112 from pelson/docs_tidy
Merge pull request #1213 from blink1073/fix-windows-install
Merge pull request #1221 from stefanv/pr_1126_update
Merge pull request #1256 from matejak/contributors
Merge pull request #1258 from blink1073/add-install-requires
Merge pull request #1289 from ahojnnes/random
Merge pull request #1344 from sciunto/doc
Merge pull request #1355 from kevin-keraudren/peak_local_max-NDarrays-issue1354
Merge pull request #1367 from blink1073/fix-deprecated-decorators
Merge pull request #1378 from arve0/fix_canny_simple_viewer_example
Merge pull request #1380 from arve0/fix_Blitmanager.remove_artists
Merge pull request #874 from emmanuelle/nlm_denoise
Merge pull request #1391 from ahojnnes/eigvals-fix
Josh Warner (Mac) (4):
ENH: Simplify marching_cubes for maintainability.
ENH: Fully cover `pad` and backports from NumPy 0.10dev
FIX: Informative IOError if package installed w/mixed permissions.
FIX: Ignore exception if attempted deletion fails (fixes #817)
Juan Nunez-Iglesias (167):
Clarify `mask` argument in `medial_axis` docstring
Update parameter list in docstring for consistency
Update label2rgb doc
Split label2rgb into two related functions
Add background label handling for label2rgb_avg
Add docstring for _label2rgb_avg
Add default values for background in _label2rgb_avg
Add docstring for _label2rgb_overlay
Add tests for label2rgb avg mode
Merge pull request #1034 from ahojnnes/label-coverage
Merge pull request #1031 from vighneshbirodkar/rag
Merge pull request #1052 from charris/numpy-1.9.0-fix
Merge pull request #1058 from nlsn/default-selem
Document NetworkX dependency in DEPENDS.txt
Merge pull request #1068 from vighneshbirodkar/rag_fix
Merge pull request #1063 from nlsn/3d-fallback
Merge pull request #1072 from blink1073/add-viewer-tests
Merge pull request #1073 from tonysyu/feature/adapt_rgb
Merge pull request #1054 from blink1073/add_test_seeds
Bug fix: nbins can be >256 in threshold_isodata
Fix incorrect test function signature
Merge pull request #1084 from blink1073/miniconda-travis
Merge pull request #1093 from tonysyu/clarify-release-procedure
Merge pull request #1090 from ahojnnes/isodata-fixes
Merge pull request #1083 from adamfeuer/import_export_pil_image_objects
Merge pull request #1099 from blink1073/build_update_followup
Merge pull request #1080 from vighneshbirodkar/ncut
Merge pull request #1106 from vighneshbirodkar/ncut_fix
Merge pull request #1087 from vighneshbirodkar/rag_draw
Merge pull request #1096 from ahojnnes/regionprops-speedup
Merge pull request #1137 from sciunto/doc
Update find_contours docstring to use r/c notation
Merge pull request #1151 from blink1073/default_fallback_doc
Merge pull request #1146 from blink1073/master
Merge pull request #1142 from ahojnnes/warp-coords
Merge pull request #1163 from blink1073/implement_assert_nD_array
Run restoration test suite when run as main
Add test for preserving image shape in deconv
Add shape fix for deconvolution functions
Fix small errors in the documentation
Fix typos and grammatical errors in uft.py docs
Warn users of `remove_small_objects` about type
Test type warning from remove_small_objects
Merge pull request #1191 from ahojnnes/morph-ref
Add Travis and Coveralls badges to README
Merge pull request #1188 from vighneshbirodkar/rag_merge
Merge pull request #1214 from blink1073/remove-null-plugin
Remove contiguous conversion for out array
Add tests for discontiguous out arrays in grey morpho
Raise meaningful error in reconstruct w bad method
Test correct error for wrong method in reconstruct
Merge pull request #1078 from tonysyu/example/adapt_rgb
Merge pull request #1230 from emmanuelle/clahe
Protect exposure.histogram from integer overflow
Merge pull request #1229 from almarklein/patch-1
Merge pull request #1235 from vighneshbirodkar/blob_fix
Merge pull request #1239 from ahojnnes/moments-templ
Merge pull request #1243 from emmanuelle/filters_rank
Merge pull request #1255 from dedalusj/regionprops-docs
Merge pull request #1261 from emmanuelle/doctest
Merge pull request #1269 from blink1073/test-all-modules
Merge pull request #1272 from blink1073/fix-tifffile-warning
Merge pull request #1290 from pratapvardhan/morph-selem
Use integer bins when histeq'ing int images
Merge pull request #1301 from stefanv/gitter_badge
Merge pull request #1304 from pratapvardhan/misc-doc
Merge pull request #1302 from ahojnnes/warp
Merge pull request #1321 from ahojnnes/hough
Merge pull request #1313 from blink1073/suppress-test-warnings
Merge pull request #1325 from blink1073/remove-label-shim
Initial work on array dimension naming guide
Restore NumPy from Numpy, grudgingly
Replace 'level' and 'plane' with 'frame'
Define 'prefetching' for users
Finish code snippet for timings
Fix and add output for timing calls
Add paragraph about data locality
Label transpose operation for clarity
Prefer row/col to r/c when talking about circles
Clarify boolean masks on color images
Give 3D image examples
Space comment and code in plot directive call
Add default bg_color to label2rgb
Add test to ensure default bg_color in label2rgb
Add docstring to matplotlib imshow plugin
Overhaul matplotlib imshow plugin
Improve mpl imshow plugin docstring
Fix incorrect call to colorbar
Replace Axes with AxesImage where relevant
Add tests for io.imshow mpl plugin
Add tests for nonstandard images
Rename ax to ax_im in mpl imshow plugin
Use different colormaps depending on input image
Overhaul imshow to clarify flow
Add test for signed images
Don't create new plot automatically
Expand the docstring for imshow
Create new figure for each imshow test
Don't create superfluous ip variable
Add reference to SLIC0 in SLIC docstring
Update treatment of convert2lab in slic
Merge pull request #1340 from blink1073/fix-filter-pkg-shim
Add underscore for ReST reference
Wrap scipy.ndimage grey morphology functions
Wrap scipy.ndimage binary morphology functions
Workaround for strange ndimage selem inversion
Update morphology dtypes tests
Minor update to binary morphology docstrings
Add crop function, inverse to pad
Add test functions for crop
Fix incorrect crop tests
Fix automatic copy even when copy=False in crop
Import crop into util package namespace
Fix and test 0-end bug in crop
Fix morpho open/close edge bugs by padding image
Make find_boundaries symmetric
Fix order kwarg for some versions of numpy.copy
Update binary morphology tests, which no longer warn
Update find_boundaries with new modes
Fix 'outer' mode of find_boundaries
Remove unused deprecation warning
Add correct subpixel boundary estimation.
Set up correct type for find_boundaries test
Make subpixel find_boundary doctest more readable
Allow different modes in mark_boundaries
Prevent unnecessary array copy for RGB images
Allow custom background_label in mark_boundaries
Don't outline boundaries by default
Simplify code for coloring boundaries
Test subpixel mark_boundaries
Specify mode for mark_boundary tests
Fix incorrect call to mark_boundaries in test
Clarify and fix docstrings
Replace em-dash with regular dash in comment
Expand explanation of _invert_selem
Don't use backticks to refer to functions
Remove unused cmorph extension
Fix a few typos
Add doctest skip directives to timing calls
Add table summarising image types
Add note on 5D images
Expand on skimage support for 3D processing
Be more specific about cat image dimensions
Specify standard Cartesian coordinates
Test symmetric selems for rank/morpho comparison
Add a paragraph or two about preserving range
Merge pull request #1351 from ahojnnes/reg-prop
Fix line wrapping
Merge pull request #1100 from vighneshbirodkar/ha
Merge pull request #1359 from blink1073/fix-novice-from-size
Merge pull request #1360 from blink1073/fix-cmyk-jpg
Replace frame with plane
Update discussion on time-varying images
Move RAG files to skimage.future
Move package to skimage.future.graph
Update bento file to moved RAG code
Update plot_rag examples to use skimage.future
Update plot_ncut example to use skimage.future
Add package docstring for skimage.future
Fix setup.py cascade
Update RAG doctest to use future
Fix even more tests still importing skimage.graph
Import graph into future parent package
Add concrete usage examples for preserve_range
Merge pull request #1374 from blink1073/fix-fallback-test
Merge pull request #1375 from tonysyu/fix/pil-compatibility
Merge pull request #1385 from stefanv/README_deps_update
Julian Taylor (1):
BUG: add signed flag to chars
Julien Coste (9):
Move canny from filter to feature
remove auto added __author__ in __init__.py file
fix wrong version number
update api_changes
fix import inside documentation and update TODO
fix import in filter.__init__
move import to avoid infinte recursion (filter import peak that import feature that import filter)
Canny is now deprecated and will be in api_changes in v0.13
hack to avoid circular import when import canny
Kevin Murray (5):
[skimg.io._plugins.freeimage_plugin] fix segfault
[freeimage tests] Add a test w/ truncated image
[test_freeimage.py] remove extraneous statements
[test_freeimage] Allow ValueError to be raised
[skimage.io.tests] add truncated jpg imread tests
Matěj Týč (25):
Refactored measure.label, added documentation.
Added support for 3D arrays
Refactored Cython stuff with easier code readability in mind
Cython minor fixes
Fixed typos + added docstrings and comments
numpy 1.6 compat fix
Added some comments + requested reformatting
Added tests for 3D labelling (that fail)
Fixed bugs so test pass now
Mainly typo fixes
Fixed a typo + cleaned the code semantics
Redone the background handling = considerable speedup
Removed declaration of deceased function
Added and tested proper exception handling concerning array shape
Introduced the connectivity parameter, regrouped some code
Fixed typos and made some style fixes
Made the scan code cleaner and faster (but longer)
Merge branch 'label3d' of https://github.com/matejak/scikit-image into label3d
Fixed bugs
Mended code style
Fixed typos, added array shape checking
Streamlined connectivity vs neighbors handling
Added fix for the strange input array shapes + tests
Removed negative connectivity support as requested
Update CONTRIBUTORS.txt
Michael Sarahan (3):
Add subpixel-precision image translation registration function to feature module
Incorporate fixes for complex images
improve test coverage. Use SciPy's fourier_shift for examples.
Nelson Brown (20):
Add default structuring element to morphology
Add docstring for default structuring element
Remove unnecessary whitespace
Address reviewer comments
Add gitignore for *.pyd Windows libraries
Add a newline at EOF
Add newline at EOF of selem.py
Add fallback decorator for 3D images
Add 3d-fallback tests for binary functions
Add doctrings and comments in response to reviewers
Add tests for ndimage fallback for 3D white_tophat & black_tophat
Adjust hanging indentation whitespace in dict comprehension
Add whitespace following comma
Change binary morphology functions to output numpy.bool dtype
Remove repeated comments
Updated docstrings
Add test that the 2D results correspond to scipy's
Fix calls to ndimage to use footprint argument
Change test of ndimage equivalence to use uint8 test image
Change ndimage test image to fit uint8 range
Pablo Márquez Neila (4):
Fix bugs in HOG
Replaced convolve1d by ad-hoc gradient computation
Code valid for all image dtypes
Minor fix
Phil Elson (3):
Added gitwash as an option on the makefile.
Updated the gitwash build.
Some minor documentation enhancements.
Phil Schaf (1):
fixed Qt5 compat
Pratap Vardhan (15):
CLN: Improve performance of disk and diamond selems
CLN: Correct dtype typo
CLN: Remove unused import and add module docstring
CLN: Minor cleanup - unused imports, pep8
DOC: Add test functions docstrings
TST: Test for selem.cube
ENH: ellipse structuring element
TST: Test for ellipse structuring element
DOC: Clean up doc strings
BUG: Change dtype
DOC: Change selem.ellipse params
DOC: Misc spell corrections
DOC: Example spell corrections
DOC: Revert to old
DOC: Update bootstrap sphnix links
Rebecca (8):
making in-place addition modification suggested in issue #1089
replacing lena in examples and most tests
adding name to contributors
renamed gabors
removed lena reference
modified array
Modified docstring
removed typo that caused test error
SemiColon Warrier (1):
updated local_binary_pattern documentation
Stefan van der Walt (144):
Move label to measure module (with deprecation). Warn that background parameter will default to 0 in v0.12.
Move implementation of label to measure submodule
Fix imports and suppress deprecation warnings
Update bento build
Fix broken and circular imports
Mention which parameters to label are optional. Simplify label deprecation.
Avoid circular imports
Correctly apply catch_warnings()
Fix markup in DEPENDS
Update MANIFEST to include all test data
Use more recent NoNorm API
Correctly compare mask to None
Ignore auto-generated notebooks in Git
Fix median filter example
Use same order as matplotlib for PySize/PyQT
Merge pull request #1033 from jni/label_image
Only import numpy after dependency check
Merge pull request #1039 from kdmurray91/fix_freeimage_segfault
Add OSX wheel generation instructions and upload script
Update wheel URL
Get tags from current repo
Indicate waiting time before wheels become available
Remember to update stable docs link. Check timestamp on wheels before posting.
Merge pull request #1059 from nlsn/exclude-win-libs
Merge pull request #1032 from tonysyu/better-rescale-intensity
Merge pull request #1095 from ahojnnes/denoise-tests
Merge pull request #1098 from ahojnnes/tox
freeimage: Correctly handle saving uint16 images (closes gh-1101)
Merge pull request #1116 from rebeccaroisin/inplace_addition
Merge pull request #1121 from Cadair/doc_theme_tweaks
Merge pull request #1124 from blink1073/master
Remove leftovers of old logger
Merge pull request #1115 from JDWarner/enh_marching_cubes
Merge pull request #1113 from jucoste/move_canny
Merge pull request #1132 from ahojnnes/win-hist
Fix indexing bug in freeimage plugin
Fix Big Endian check
Merge pull request #1114 from pelson/gitwash
Merge pull request #1043 from sciunto/joblib
Merge pull request #1144 from blink1073/master
Merge pull request #1167 from ahojnnes/inv-comb
Merge pull request #1168 from ahojnnes/rot-center
Merge pull request #1162 from blink1073/improve-pil-error-messages
Fix incorrectly documented non-optional argument
Expose point_in_poly and move to measure module
Merge pull request #1081 from SiggyF/fedor-setup-installrequires
Merge pull request #1174 from jni/deconv-shape-fix
Allow modification of LineTool handle style
Add more complete documentation for widget callback
Invoke linetool with properties to increase coverage
Reminder to remove previous installations when upgrading on Windows
Improve my grammar
Also add handle style to ThickLineTool
Fix class names
Merge pull request #1130 from capitanbatata/more-illuminants
Merge pull request #1176 from ahojnnes/ransac
Merge pull request #1193 from pratapvardhan/morph-selem
Merge pull request #1175 from blink1073/update-setup
Merge pull request #1189 from blink1073/fix-pil-plugin
Merge pull request #1198 from blink1073/travis-sh
Merge pull request #1202 from jni/badge
Merge pull request #1199 from blink1073/use-pypi-tifffile
Merge pull request #1204 from blink1073/travis-streamline
Merge pull request #1206 from tonysyu/fix/canny-deprecation
Update error message for no plugins
Print correct version when dependency is not satisfied
Merge pull request #1171 from jjhelmus/unwrap_phase_3d_bug
Merge pull request #1200 from blink1073/multiimage_tifffile
Use equal_nulp for more robust test comparison
Update edge detectors to produce values in [0, 1] and clean up tests
Document threshold scaling
Remove prints in test suite
Merge pull request #1222 from sciunto/add_shape_draw2
Rename and deprecate filter module to prevent shadowing of built-in keyword
Check for deprecation on import is problematic. Rather just check that filter can be imported normally.
Fixes according to PR feedback
Do not render filters documentation twice
Ensure import of old filter namespace raises warning
Filter won't be imported twice--check for its deprecation correctly
For `filter` submodule, explicitly set warning registry location
Add debug print to failing assert
Make sure warning is raised upon import
Simplify warning test
Merge pull request #1226 from blink1073/show-travis-build-versions
Remove build status until Travis-CI yields stable builds
Merge pull request #705 from emmanuelle/userguide
Merge pull request #1237 from emmanuelle/filters_rank
Merge pull request #1249 from arve0/fix-doc-build-virtualenv
Merge pull request #1251 from arve0/fix-github-logo-icon
Merge pull request #1247 from emmanuelle/gallery_edges
Merge pull request #1254 from matejak/label3d
Merge pull request #1252 from sciunto/readme
Merge pull request #1250 from emmanuelle/seealso
Merge pull request #1253 from blink1073/travis-venv
Webhook to report Travis-CI status on Gitter
Merge pull request #1268 from pratapvardhan/morph-selem
Merge pull request #1267 from blink1073/fix-travis-retry
Merge pull request #1263 from blink1073/fix-load-imgnum
Merge pull request #1275 from blink1073/use-wheelhouse-simpleitk
Merge pull request #1285 from blink1073/fix-travis-setup
Merge pull request #1281 from blink1073/fix-imshow
Merge pull request #1273 from blink1073/increase-pip-timeout
Merge pull request #1286 from blink1073/python3-doc-build
Merge pull request #1288 from pratapvardhan/morph-selem
Merge pull request #1292 from emmanuelle/numpydoc
Merge pull request #1293 from blink1073/streamline-travis
Merge pull request #1294 from blink1073/streamline-travis
Improved example notebook generation
Fix warnings generated by gallery examples
Fix integer division in CLAHE
Fix docstring markup errors
Raise an error that was suppressed to please Travis-CI
Merge pull request #1277 from emmanuelle/api_layout
Merge pull request #1299 from ahojnnes/block
Merge pull request #1051 from ahojnnes/bicubic-interp
Add Gitter badge
Merge pull request #1259 from emmanuelle/ug_transform
Merge pull request #1303 from ahojnnes/unwrap
apigen: Fix function detection in Python 3
Merge pull request #1307 from ahojnnes/unwrap-rand
Merge pull request #1337 from jni/fix-label2rgb
Merge pull request #1338 from blink1073/imshow-fixes
Merge pull request #1339 from jni/slic-doc
Merge pull request #1318 from blink1073/pyqt5
Merge pull request #1310 from jni/morpho-update
Merge pull request #1348 from jjhelmus/fix_unwrap
Merge pull request #1319 from ahojnnes/geom-est
Merge pull request #1280 from jni/array_order
Merge pull request #1352 from jni/data-types
Merge pull request #1356 from blink1073/travis-build-docs
Merge pull request #1371 from blink1073/fix-reference-links
Merge pull request #1079 from blink1073/fix-colorconv
Merge pull request #1377 from blink1073/test-against-pil
Fix gh-pages under Python 3. Make robust against running twice in a row.
Update README and installation instructions
Mention license type
Merge pull request #1320 from blink1073/pr/1057
Merge pull request #1077 from buzmakov/master
Merge pull request #1066 from msarahan/PhaseCorrelation
Add @msarahan to CONTRIBUTORS.txt
Add missing 0.10 release notes
Add 0.11 release notes
Merge pull request #1398 from stefanv/0.11_release_notes
Update version to 0.11.0
Steven Silvester (385):
Fix python 2.6 restoration/unwrap error
Move version_requirements to _shared and remove skipif from require.
Add documentation and rename import variable
Formatting fix.
Formatting and docstring cleanup.
Remove confusing dummy variable
Update comment
Improve import behavior for rag fallback
Add note in travis
Add travis_retry around the conda installs
Make suggested changes to build update and use travis_retry for all installs.
Fix #1108
Fix matplotlib install, make installs verbose, add spacers
Fix typo in spacer declaration
Add mask option to exposure.equalize_hist with test.
Add on_scroll behavior and allow line to change width.
Fix failing tests
Clear the blit background when the image changes
Fix swirl docstring to use (row, column) nomenclature
Remove extra space
Remove blit background when overlay changes
Use functools.wraps in default_fallback dectorator
Rename (x, y) -> (row, col) in _geometric.py.
Merge pull request #1139 from grlee77/viewer_checkbox
Add ndim checks in filter.edges
Catch PIL imread problems early and generate error message
Fix indent
Perform im.getdata check up front
Clean up error message.
Point user to Pillow docs for external libraries
Minor formatting of error message
Implement new assert_nD utility function
Implement assert_nD in filter and feature packages
Allow assert_nD to take multiple dimensions
Use assert_nD in template.py
Fix syntax error
Fix syntax error and weiner check
Add docstring to assert_nD
Fix assert_nD call in template.py
Fix canny test to reflect new error type.
Make ndim explicit arg for clarity and update docstring
Catch a few more asserts
Add ndim argument in utility method
Update build requirements and documentation
Reorganized dependencies in DEPENDS.txt.
Fix install_requires string formatting
Fix python 3 unicode error
Remove unicode decode
Fix python3.3+ builds
Look for version instead of version
Add description for networkx optional requirment
Merge pull request #1179 from stefanv/linetool_handle_style
Merge pull request #1180 from stefanv/doc/widget_callback
Merge pull request #1181 from stefanv/doc/upgrade_binary_win_install
Make matplotlib a requirement.
Fix travis syntax errors
Fix another travis syntax error
Move matplotlib to a runtime requirement
Remove redundant 'usage requirements'
Replace PIL with matplotlib in build_versions.py
Fix typo in travis preventing mpl 1.0 from installing
Install matplotlib build dependencies
Fix matplotlib base version and install libjpeg-dev
Install libjpeg-dev, not build-dep libjpeg-dev
Try explicit apt installs for matplotlib
Allow for unicode version info
Try a newer mpl due to Tkinter err on install
Fix error in viewer test when mpl is present but not qt.
Avoid type incompatibility warnings
Add networkx to requirements
Update depends and add simpleitk and imread
Update travis to better reflect requirements
Allow for 3-part dependency versions
Print full required version str
Install networkx up front
Do not require jpg support from io plugins in novice test
Add pillow to requirements (but allow for PIL)
Move Pillow to runtime reqs in DEPENDS
Fix setup version requirement handling
Fix __import__ fromlist
Add the rest of the packages to the build_versions script
Use distutils LooseVersion for version check
Install pillow from wheelhouse
Use strings as required by LooseVersion
Fix syntax for python3 in setup.py
Turn off doc examples to see if the build passes otherwise
Fix handling of version_attr for python3
Do not change matplotlibrc settings until after pyqt install
Only install pyamg on py2.6 and py2.7
Reinstate pyqt install.
Try a reinstall of matplotlib with pyqt support
Fix yaml syntax
Revert to mostly working travis
Bump matplotlib to 1.2
Try matplotlib 1.1.1
Fix required version
Update to use wheelhouse
Fix travis syntax and use tools/header.py
Clean up travis
Remove print statements
Use all min reqs on Python2.7, fix syntax error and variable overshadow
Use github downloads for specific versions on Py2.7
Fix travis syntax errors
Fix syntax error and QT API var handling.
Fix string interpolation error
Clean up required versions
Another attempt at variable substitution
Yet another attempt at variable substitution
Fix installs for libfreeimage3 and astropy
Fix install of imread
Clean up simpleitk description and imread link
Add notes about Travis usage
Add notes about and variable substitution
Use tabs to line up if blocks
Update Travis notes
More updates to travis documentation
Fix handling of non-uint8 images for PIL imsave.
Add tifffile.py and its license.
Add tests for new behavior.
Remove old tifffile plugin in favor of using it in PIL plugin.
Add tifffile.c and associated build target.
Clean up tests and add to bento.info.
Fix PIL tests, move helpers to _shared, fix widgets test
Fix deprecation warning in draw.py from numpy 1.9
Ignore tifffile.py in coveragerc
Reinstate tifffile_plugin for backwards compatibility
Remove temporary file and clean up imports
Reinstate tifffile test
Clean up imsave behavior and beef up docstring
Add references in docstrings
Properly handle all image types for PNG, beef up docs
Fix handling of temp file removal
Fix reference citation
Do not try and save signed integer output, improved signed checks for tif.
Fix docstring typo
Rename the convenience methods
Clean up pil and tif tests
Remove unused import
Fix relative import and test import convention
Try removing the system numpy
Force numpy uninstall
Make sure there is no previous matplotlib or scipy
Numpy is the only one installed
Add 'imsave' to the '*' output of pil_plugin
Update doc / trigger a travis rebuild
Make pil the default plugin
Fix docstring links
Push parts of travis into separate shell scripts
Remove variable exports
Add shebang lines
Add explicit sh executable
Reorganize files
Use an explicit matrix
Try removing the explicit env
Put the TEST_ARGS in travis_setup.sh
Specify Qt API
Rename variable to MPL_QT_API
Put the whole script in an sh file
Make shell scripts executable
Remove the travis numpy
Rename the script
Switch shell to bash
Use more generic shebang
Try to get system matplotlib to pass requirments.txt
Fix shebang line
Update the notes
The python path should include the parent directory now
Fix formatting of 'for' loops
Clean up formatting and a comment
Keep consistent with calling convention
Put the WHEELHOUSE as a global variable
Put the other env variables up top as well
Move dependency output to setup script
Install skimage so we do not have to fool with PYTHONPATH
Use a straight install
Move env variable to before_install
Add whitespace
Remove whitespace
Reinstate the separate build step
Move the rest of the code to the scripts.
Use a null backend during the doc examples
Formatting
Matplotlibrc was in a different location in mpl 1.1.1
Fix MPL_DIR location
Add a try/catch for RectangleTool.disconnect_events
Disconnect the events manually
Use a manual hack to remove the canvas events for old MPL
Make sure we disconnect all the signals
Fix comment typo
Use the PyPI tifffile instead of bundling
Bump the required tifffile version
Fix tifffile imports
Update the setup script to install tifffile
Fix install_requires
Remove install_requires altogether
Use retries where applicable
Break script into parts and travis_retry optional installs
Make new script executable
Export the MPL variables
Fix handling of variables - use local
Add tifffile to a new external package.
Add the __init__.py to make it a package
Remove tifffile as an external dependency
Use new wheels site and do not install tifffile until optional
Add tifffile.c to the build
Fix path to tifffile.c
Rename file to a valid module name.
Do not test or cover the external libraries directly
Use proper nose option
Just disable doctests in tifffile_local
Use tifffile 0.3.2, which passes doctests
Use newer version of tifffile.py.
Move tifffile license description
Avoid star import
Free disk space during travis install
Quiet down optional installs to avoid hitting 10000 line limit
Use recommended extern import method for cython
Merge pull request #1210 from stefanv/doc/io_null_doc
Merge pull request #1211 from stefanv/bug/setup_dependency_error
Remove null plugin since we have the pil plugin as a requirement
Update tests to use default plugins.
Clean up the imports in the pil_plugin
Use matplotlib as the default imshow
Merge pull request #1217 from jni/morpho-out
Merge pull request #1219 from jni/reconstruct-error
Add tifffile support for MultiImage
Update multi_image test and install tifffile for travis.
Fix implementation errors
Add tifffile support for MultiImage
Update multi_image test and install tifffile for travis.
Fix implementation errors
Cleanup
Add animated gif, a test for it, and tests without conserve_memory.
Fix problems from rebase.
Add a comment about reading in order
Use pil_to_ndarray to load PIL images
Fix implementation of pil_to_ndarray in MultiImage
Allow multiple frames in PIL data in imread
Allow PIL imread to read multiple images
Add a note about sequential access.
Change MultiImage to use new imread.
Avoid circular import
Fix failing tests
Finish merging multiimage capability into collections
Pep8 cleanup
Allow keyword arguments to imread
Clean up docstring
Add tests for ImageCollection with multi_images
Close the image file pointer when done.
Test collection slicing with multi-images.
Indentation fix
Merge pull request #1046 from stefanv/osx_wheels
Merge pull request #1184 from stefanv/filter_rename
Move debug info into top level travis for visibility
Merge pull request #1227 from stefanv/remove_build_status
Merge pull request #1232 from jni/negative-histogram
Merge pull request #1240 from ahojnnes/edge-sign
Use virtualenv for all builds and install everything from wheelhouse
Use system packages on Py2.7
Clean up use of python version check for pyqt install
Add install_requires for six
Fix python version check
Invoke sudo to create link to system PyQt
Merge pull request #1262 from stefanv/gitter_travis
Move the virtual framebuffer to top level yaml
Fix handling of imgnum
Fix handling of multi-image gifs and add test
Reinstate run_module_suite in test_pil
Fix file indexing in ImageCollection
Fix handling of singleton frames in pil_to_ndarray
Test all modules (including underscores), and always doctest
Use the test arguments from skimge.test_verbose
Update test args for command line
Do not use importlib in tifffile_local to avoid warnings
Improved docstring
Beef up docstring
Increase timeout to install requirements
Set the pip timeout globally for Travis
Install simpleitk from wheelhouse if available
Merge pull request #1274 from blink1073/use-wheelhouse-simpleitk
Do not try and install SimpleITK on Py3.2 or 3.4
Fix boolean logic for SimpleITK install and add warning
Fix typo in bash conditional
Create a new figure for imshow if there is already data
Prevent travis-try breaks when recreating hard link for PyQt
Add python3 doc building capability
Add a script to create env variables and travis folding helpers
Switch to a single script to get the folds to work
Use our own retry command since travis_retry is not exported
Use the system python for 2.7
Do not explicitly remove packages from requirements.txt
Fix usage of set command
Fix section titles to avoid spaces
Add a coveralls repo token
Update travis_notes and move to tools folder
Reinstate the pip timeout
Shuffle some commands back to before_install
Merge pull request #1284 from emmanuelle/fix_dox
# This is a combination of 7 commits.
Handle warnings in several packages
Handle more warnings and reset io plugins as needed
Accommodate upcoming changes to RectangleSelector API
Clean up PIL plugin and handle more warnings
Fix some doctest warnings
Import scipy before turning on warnings
Add a test setup helper function
More doctest and pil_plugin fixes
Handle more warnings
Create new expected_warnings helper and some cleanup
More cleanup and updating of tests
Add a random seed to the setup
Fix handling of multiple warnings and update tests
Allow for no exceptions to be raised and cleanup
Fix label wrapper function
Change default neighbors to None
Import scipy.sparse in setup_test
Allow warnings in the minimum build
Fix Py2.7 build errors
Fix syntax error and missing | operator
Fix final failing test on Py2.6 build
Update docstring and fix pyamg warning check
Fix scipy.sparse.sparsetools warning
Fix indent in docstring example
Style fixes
Draw the canvas when creating the ax to avoid RuntimeError
Try using matplotlib cleanup decorator
Remove unnecessary measure.label shim
Update viewer for PyQt5 compatibility
Use a smarter backend selection
Do not try and guess the mpl backend
Remove debug raise
Allow viewer package to import without Qt
Do not use ImportError behaviour in viewer
Fix import error in viewer.utils.core
Fix another viewer import
Fix the dummy Signal
Another fix for dummy Signal
Instantiate QtCore dummy class
Add dummy Qt properties
Add QWidget to the mock Qt
Fix mock Qt objects again
Merge pull request #1314 from SalvatoreScaramuzzino/RectTool_docs
Fix lingering merge issue
Merge pull request #2 from flying-sheep/pyqt5
Separate qt version check from has_qt flag
Merge pull request #1328 from pratapvardhan/misc-doc
Merge pull request #1300 from jni/io-imshow-data
Update docstring and create test module setup function
Fix filter package shim implementation
Merge pull request #1341 from JDWarner/cover_pad
Merge pull request #1324 from ahojnnes/rel-import
Force novice.Picture.from_size to return a uint8 image
Add handling of CMYK images
Avoid creating an int64 array
Merge pull request #1361 from sciunto/doc2
Add test for cmyk and use relative imports
Reinstate run_module_suite
Do not add alpha channel to CMYK images
Compare the images in LAB space
Merge pull request #1365 from jni/future
Merge pull request #1366 from JDWarner/mixed_permission_error
Cannot use bare deprecated decorator
Give an alternate canny location
Add an explicit test for canny deprecation
Fix canny import test
Merge pull request #1370 from r3vl1s/imread_collections
Update test to reflect new error behaviour
Fix some sphinx warnings and add to build
Skip build on 3.2
Remove imshow from PIL plugin
Update the README with some warning hints
Install latex and dvipng
Do not build docs on Py2.6
Be more specific about citation not found error
Remove citations in first line of docstring
Fix links
Remove unnecessary option and update test
Fix behavior of skimage.doctest when nose is not found
Test against PIL on python 2.7
Fix name of pil package
Merge pull request #1382 from arve0/ImageViewer.update_image
Merge pull request #1384 from stefanv/py3_ghpages
Merge pull request #1376 from jmetz/threshold_li
Merge pull request #1392 from jmetz/threshold_li
Merge pull request #1397 from JDWarner/fix_find_contours
Stuart Mumford (1):
Website font readability improvements.
Tim Seifert (2):
load correct _frame_index
fix for concatenate test
Tony S Yu (24):
Tweak range definition in `rescale_intensity`
Make `intensity_range` a public function
Edit wording of docstrings
Clarify docstrings
Clarify docstrings
Add TODO for deprecation removal
Add tests for intensity_range and rename parameter
Use normal deprecation warning
Add tests for intensity_range and rename parameter
Merge pull request #893 from blink1073/fix-adapthist-757
Merge pull request #1071 from blink1073/cleanup-adapthist
Add `adapt_rgb` decorator and helpers.
Remove cast and rescale and adjust test values to match
Fix docstring for wrapped functions
Remove orphaned import
Merge pull request #1023 from ahojnnes/release
Clarify release procedure doc
Merge pull request #1065 from blink1073/multi_linetool_drawing
Fix deprecation of canny function
Add example for `adapt_rgb`
Set colormap to grayscale
Update import to match rename of `filters` module
Fix compatibility with PIL
Fix numpy 1.9 warnings about array.fromstring
Vighnesh Birodkar (159):
Added mean color RAG construction code
Added edge threshold cut
Renamed graph.py to rag.py
Added testcase
Added docs
Docs formatting
Added examples in docstring
Formatting changes
Minor Foramtting
Corrected test mistake
removed comments
Added example
Added explanation to example
Added bento.info
Added networkx to requirements
Added networkx installation
CHanges to get Python3 working
Renamed _construct.pyx to _build_rag.pyx and some code corrections
Removed cython file and added nd python function for RAG construction
Corrected rag import
reverted benfo.info and setup.py
Added references
type casting to double instead of long
rebased and used color.label2rgb
Added comments and switched try with if
Added RAG merge_nodes test case
added merge_nodes test
Formatting changes
Graph can now merge non adjacent nodes
Used mapping in graph_cut.py
Naming changes and formatting
Added connectivity parameter and a function input to merge_nodes
Made test Python3 compatible
Formatting and typos
removed commented stataments
Formatting and docstring changes
Switch label_image to labels
Changed prototype of weight_func
docstring corrections
update test for py3
None comparison
Added RAG merge example
Added comment about footprint
Change merge_nodes code and test case
Docstring changes.
merge_nodes docstring change
test_rag.py formatting
Got Py3 test to pass
Changed max_edge in example/plot_rag.py
Use sets instead of dictionaries in merge_nodes
Rename methods and edit docstrings
Changes to plot_rag.py
Typos
Got doctest to pass and docstring changes
docstring change
Doctest Passing
made RAG public and hyperlinked networkx.Graph documentation
Docstring change
Spelling correction.
Fixed threshold in example
First working copy
pep8 changes
Cleaned up rag.py
cleaned up _ncut.py
Docstrings
Docstring of graph_cut.py
rectified threshold mistake
docstrings to _ncut.py
docstring to _ncut_cy.pys
Comments to graph_cut.py
Added example for ncut
Updated bento file
used standard eignen solver
doc string correction
Remove unused except caluses
use map_array instead of modifying graph
rename method to cut_normalized
Refer sections of paper in comments
Add unit test
Cut cost is computed by Cython code
API changes, comments and docstrings
rag copy in threshold cut
test skip
comment
Fixed potential import error
skip error test
Docstring changes and typos
docstring changes and code movement
test case for in place
docstring of _label_all
corrected similarity
Minor changes
Fix Reference format
change ref format in example
Update _ncut_cy.pyx
Update graph_cut.py
Frist working copy of RAG draw
Formatting
Docstrings
Corrected docstrings
string wrap
rebase and change API to support mpl colorspec
None comparison
Fixed doctest
handled matplotlib not present case
add desaturate option
pep8
Chnaged palette in example
Chnaged palette in example
removed file save
corrected title
fixed init
fixed imports
update relase doc
force copy
cast labels in ncut
Added example with cubehelix
remove self loops in rag
Spelling error
added non in-place merge
Corrected new id logic
change in random number max logic
cleanup of if else block
sequential numbering of nodes using max id
Change None to 0
always return new id and put new id logic in a function
Docstring changes
fixed blob area overlap function warning
working code
docstrings
unit tests
Description of example
fix example
rebase and docstring changes
added nx check in test
edge heap
complete heap implementation
blank line
lists in the heap to avoid copying of dict
doc string
addition inline
Rebase work
Spelling
spelling check
Removed ASCII art
handled the function with callbacks
added merge_in_place option
code cleanup and removed test
for iterator change
rename mapping array
rename mapping array
put code into functions
changed function calls
Added tests
minor formatting
Removed local debug statement.
Improved test case and removed duplicate test
Improved test case
Fixed tests
Yaroslav Halchenko (9):
ENH: added -b debian for Vcs-Git field for correct debcheckout
Merge tag 'v0.10.1' into releases
Merge tag 'v0.11.0' into releases
Merge commit 'v0.11.0-102-gb719fd7' into debian
Fresh upstream release - includes slicing-error.patch freeimage-fix.patch
Updated debian/watch to avoid deprecated redirector
refreshed patch
debian/{,tests/}control - added python{,3}-networkx to {build-,}depends and Recommends
debian/tests/python* - for now exclude testing of test_tools.py due to #779847 in mpl
arve0 (5):
fix building of doc in virtualenv. add short description in readme
fix github logo icon path
use feature.canny
fix typo artist.remove -> artists.remove
move CollectionViewer `update_image` to parent class
blink1073 (33):
Add random seeds to tests per #1044
Move random seed prior to first random() call
Set the unused portion of the image to 0
Implement a mode enum
Update docstring
Change 'trim' to 'crop'
Add test for adapthist modes
Switch to HSV, refactor equalize_adapthist, fix #757, cleanup docstring
Update adapthist tests, add test for alpha channel and rgb mode handling.
Fix failing tests and turn module level testing back ony
Start removing optional edge pixel handling
Fix handling of border pixels and update tests
Refactor to use np.pad, naming changes, update test.
Remove unused deprecation import.
Minor cleanup of adapthist module
Rename module to be more explicit
Add tests for all of viewer subpackage, with necessary file mods
Fix failing tests
Address travis failures
Another travis fix
Skip tests if matplotlib is not present
Make skip condition cleaner
Move away from random.random in favor of random.rand
Fix failing doctests
Update Travis build to use Anaconda.
Move handling of blit behavior to axes object.
Push handling of line tools to axes level for better coordination.
Remove unused parameter from docstring
Refactor blit manager and event manager to viewer
Switch plugins to use new tool api
Updates to get all tools tested and working
Make other suggested style changes
Fix holes in lab conversions and add tests
capitanbatata (10):
Added support for different illuminants.
Added new tests. The support for a wider range of illuminants is now tested.
Added tests for the new functionality.
Undone change in skimage/__init__.py.
The format strings were updated to include numbers.
Corrected code to conform to Python coding conventions (PEP 8).
Added Stephan comments.
Removed the print statements from the test code.
Incorporated Stefan's comments.
Added Johannes' comments.
emmanuelle (50):
Changed a link that pointed to a specific release of scikit-image using
Implemented Stéfan's minor comments.
Added a short paragraph + see also section in docstring of
Fixed broken link to NumPy's docstring standard.
First version of sections on color and exposure.
Removed deprecated module name filter from tutorial
Added an import of `median` from the `filters` module
Added a second example to the edge filtering gallery example, focusing on
Modified test for median filter import
Added references on rotation invariance and filters.
Completed docstrings for the different edge filters.
Small additions to some docstrings in exposure module
Corrected typos + modified docstring that made doctest fail
Corrected another bug that made doctest fail
Minor corrections
Moved non-local means denoising to restoration submodule
Modified bento file with non-local means extension
Removed test file that has been moved to restoration submodule
Modified import to be compatible with Python 3
Faster version of non-local means denoising for 2D greyscale images
Modified a few docstrings that made doctesting fail
Enhancements to the text
Modified the order of API docs page so that table of contents is always
Over and underline alignment
Removed seealso field that was not recognized in gallery example
Updated numpydoc files from the github package numpy/numpydoc
Minor corrections
Minor corrections
Removed normalization of h parameters because float images will be
Implemented asymmetric distance computation to save speed factor of 2
Renamed module, since tests were breaking because module and function
Bug correction: I had forgotten to add __init__.py
Implemented fast algorithm also for 3-D and 2D-RGB images. Changed API so
Changed type of error returned for image dimension strictly greater than 3.
Added docstring to helper functions in cython submodule
Changed API of nl_means_denoising function to have a multichannel flag
Merged 2D and 2D RGB functions for non-local means denoising
Removed blank lines in docstring
Changed variable names for coordinates for better consistency with
[ENH] Removed eps parameter that was not needed.
Global constant defined for distance cutoff
[ENH] Docstring cleaning
PEP 8: spaces and operators
Helper functions for computing the integral of the difference between
Modified variables' names.
Modified name of image dtype.
Removed a few redundant lines.
Added comment for inner loops.
Added a comment about normalization.
Added some comments inside Cython functions.
kpk09 (4):
Added broken test for feature.peak_local_max when the image is 3D and num_peaks is set. The current code only holds for 2D images.
Fixed bug in feature.peak_local_max: num_peaks should now be usable for ND arrays.
Using numpy.argwhere makes code easier to read
Added Kevin Keraudren to the list of contributors: test and fix in feature.peak_local_max
salvatore (8):
Added an example of use of CanvasTools.RectTool to allow generation of docs.
Added an example of use of CanvasTools.RectTool to allow generation of docs.
Contributor file updated .... very nice to be part of this beatiful scikit!
try to format properly a function in examples of RectTool
deleted ">>>" in body of print_the_rect function
... added in indented code
Travis auto-build Doctest skipped to avoid window opening
removed numpy import and spaces
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