[skimage] annotated tag debian/0.5.0+git100-gfeb3e92-1 created (now 7381f39)
Andreas Tille
tille at debian.org
Fri Dec 23 08:22:11 UTC 2016
This is an automated email from the git hooks/post-receive script.
tille pushed a change to annotated tag debian/0.5.0+git100-gfeb3e92-1
in repository skimage.
at 7381f39 (tag)
tagging ae0e6fd114370a65232adb0e8492d23b10303c79 (commit)
tagged by Yaroslav Halchenko
on Mon May 7 22:17:30 2012 -0400
- Log -----------------------------------------------------------------
Debian release 0.5.0+git100-gfeb3e92-1
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Andreas Mueller (24):
pep8
removed dead link form canny help string
check if input for canny is 2d array, test for error raise.
somewhat sensible default values for canny edges
pep8, removed unused import and variables
new canny edge tutorial location
rank filter asserts input is 2d
rank filter has radius 2 by default. radius 1 fails ?!
remove unused imports, avoid from x import *
pep8
adjusted default value test to new default values... what does that test do?
in median filter, rename input data to "image"
slightly faster image conversion by creating less temporaries.
pep8 whitespace
gracefully ignore absent plugins
this depends on the plugin used
removed debugging code
[ENH] include matplotlib's imread
try to load only plugins that have both imread and imshow
add qt plugin again.
COSMIT removed unused import
DOC some sphinx and rst fixes
DOC finally....
DOC minor
Brian Holt (16):
Initial implementation of Histograms of Oriented Gradients
pep8 + addressing some of Stefan's comments
replaced gradient operation with np.diff
replaced arctan with arctan2
merged upstream master
use sat_sum for performance improvement
Merge pull request #1 from amueller/hog
Initial implementation of Histograms of Oriented Gradients
pep8 + addressing some of Stefan's comments
replaced gradient operation with np.diff
replaced arctan with arctan2
use sat_sum for performance improvement
added HOG example
pep8
added HOG example
pep8
Damian Eads (7):
Finally, I've checked in my additions (hopefully) the right way.
Fixed docstrings. Lines now only span <= 80 chars.
Fixed dtype docstrings.
Based on scikits/image/opencv/setup.py
Added subpackage 'morphology' in setup.py so it traverses there.
Regression tests written for morphology
Regression tests for morphology
Dan Farmer (11):
Merge Cell Profiler Canny edge detector
Add init entry so importing works right
Format for pep8 compliance, improve documentation, and make mask optional.
Remove smooth.py for now
Update docs and convert convolution to ndimage sobel function
Converted logical ops to bitwise ops and made cosmetic changes wrt pep8 compliance
Fix docstrings and one more pep8 issue
Modified load_library for windll
Fix indentation error that broke linux support
Fix more indentation errors
Remove debugging text
Emmanuelle Gouillart (18):
Give explicitly the git clone command in the installation notes.
New module for total variation denoising, for 2D and 3D arrays.
Moved the tests of tv_denoise to filter/tests
documented the input dtype in tv_denoise
Modified README to point to the new github repo. Mentioned in install doc
Modified README to point to the new github repo. Mentioned in install doc
Known errors during build for Windows.
Fixed broken plot_directive.py so to build the doc.
Merge branch 'master' of https://github.com/scikits-image/scikits.image
Name of new github repository in setup.py of submodules
Example generation from scripts, taken from scikit learn
A few fixes: give credit to scikit-learn guys, fix examples...
Change default angles in iradon (as many angles as projections)
More tests on radon and iradon
Merge branch 'stefan-radon'
Renamed fast_watershed to watershed.
Docstring for rank_order
BUG: division by zero for small arrays in iradon
Gael varoquaux (1):
MISC: Clean ups in TV
Gary Ruben (1):
Added forward and inverse 2-D Finite Radon Transform
Holger Rapp (5):
Fixed shutil.cp -> shutil.copy; the former doesn't exist on python2.6
Added a more stable detection of opencv library by introducing a new file: _libimport.py
Added cvFindChessboardCorners
Added support for cvDrawChessboardCorners
Merged with trunk
James Turner (5):
JT: added PyFITS plugin, tests and data
JT: various minor comments from Stefan
JT: more minor comments from Stefan
JT: fix an import when pyfits is missing
Warn user when Cython can't be imported
Johannes Schönberger (33):
added draw.polygon function with test cases
replaced fixed output array size with dynamic lists
improved doc string
removed area function and removed old comment
added example script for draw.polygon function
removed geometry package from setup script
added draw circle and ellipse functions
improved doc string
renamed function bresenham to line
combined all draw functions in one example script
changed interface of draw.polygon function for a more consistent usage
improved color assignment of circle in shapes example script
added explicit cython list type and changed creation of contiguous arrays
DOC: update contributors
added adaptive threshold
fixed some typos
added mean method to adaptive thresholding
renamed adaptive_threshold to threshold_adaptive
updated thresholding example script with more examples for adaptive thresholding
clarified comment
removed unused import
adapted new function name for adaptive threshold in test cases
updated test cases for adaptive thresholding
added generic method to adaptive thresholding
replaced unicode characters in doc string
separated filter masks of mean filtering in adaptive thresholding
improved doc string of adaptive threshold with more detailed description and example
changed name of array variable
restored old otsu threshold example script
cython implementation of adaptive thresholding replaced with pure python version
removed unnecessary cast step
fixed typo in doc string
fixed bug when sigma is set manually
K.-Michael Aye (1):
Fixed 2 typos and 2 wrong argument types in the docs.
Kyle Mandli (8):
Add source related to generation of functionality coverage.
Modify TASKS to include pointer to coverage docs
Colored missing text in table
Add complete matlab image API
Change look and feel of table, add better handling of table columns
Change default css to include coverage bar formatting
Bug fixes and documentation writing
Fix display of coverage bar
Luis Pedro Coelho (2):
Fix freeimage_plugin.imsave
BUG: Correctly handle images with an alpha channel
Martin Bergtholdt (1):
BUG: Windows does not have round in math.h
Neil (21):
Remove outdated reference to 'load_plugins'
Convert from CRLF line endings
Rework exception handling logic in freeimage_plugin.py
Fix logic error in _load_library
replace TemporaryFile with NamedTemporaryFile, for compatability with later python versions
Only call MultiImage if PIL is available to ensure nose handles this case properly
Remove temporary files
Replace old raise form
Return correct type for as_grey with freeimage
Pass as_grey to the imread plugins
Skip pil_plugin tests if PIL isn't available
Don't rely on pil for plugin_priority test. Skip test if neither pil or freeimage are available
Revert "Pass as_grey to the imread plugins"
Remove as_grey from plugins
Fix bug with 2D images
Add qt-based imread function
Only enable imread for new enough sip versions. Warn user if sip is too old
Try initialise multiple plugins, not just PIL
Don't return an alpha channel if it's not present. Fix return type of as_grey
Remove as_grey from qt imread
Fix axes color order
Neil Yager (24):
Initial revision of skeletonization
Added skeleonize example
Merge remote-tracking branch 'upstream/master' into neil_yager-skeletonize
Added more objects to skeletonize demo
Added unit tests to skeletonization
Added a new unit test
Updates based on review comments
Address 2nd round of review comments
Bug fix: Ignore alpha channel when opening RGBA image as grayscale
Homography docstring update
BUG: Fix failing test_homography unit test.
BUG: Problem importing imread
NF: Initial commit of greylevel co-occurance (pure python)
ENH: Compute some standard propertices for GLCMs
ENH: Added a gallery example of GLCM textures
DOC: Added latex formulas to docstring
ENH: Use Cython to compute GLCM
BUG: Make sure image array is contiguous
ENH: Updates based on review comments
BUG: Fix typo and docstrng
ENH: Address division by zero errors
BUG: Fixed warning suppression error
Long lines, remove doctest, division by zero, data type ranges
Update to docstring
Nelle Varoquaux (9):
Renamed scikits.image to skimage
skimage/version.py should be ignored. Doc has been updated with new module
Harris corner detector
Added tests
Small fixes on the Harris corner detector - documentation, method renaming etc
Added tests for harris, and small fixes
Added parameter to Harris corner detector to set the deviation for the gaussian kernel of the harris response computation
small fixes on the Harris' documentation: added capital letters where needed
Added Gaël Varoquaux to the corner detector contributors
Nicolas Pinto (14):
ENH: move 'util.array_views' to 'util.shape'
STY: pep8 in util.shape + its tests
FIX: revert version.py
STY: fix typos
STY: move 'util.shape' contributors to CONTRIBUTORS.txt
ENH: add montage2d with tests
ENH: add a 'normalize' kwarg to util.montage2d()
DOC: add example of use of view_as_blocks with kmeans for simple dictionary learning
FIX: util.montage2d 'normalize' becomes 'rescale_intensity' and defaults to False
DOC: update view_as_blocks and gabors_from_lena example using comments from @stevanv (PR #138)
DOC: don't divide by 255 when it's not required ;-)
DOC: remove dependency on PIL, see PR #138
DOC: remove <BLANKLINE> nastiness, replace with appropriate doctest directive
FIX: montage2d should not use rescale_intensity's out_range kwarg
Nicolas Poilvert (6):
initial push of array view codes. tests for block views
remove empty line in __init__
more tests on rolling views
simplifying code for clarity and modifying tests
make doctests pass with nose
DOC: add example for util.shape.view_as_{blocks,windows}
Pieter Holtzhausen (44):
Added CellProfiler sobel and prewitt functions.
Fixed PEP8 and added numpy documentation.
Added destination to Makefile and fixed doc system
Fixes
Removed followed files
push script fix
Push script excludes all git* fix
Removed generation
Script to checkout docs repo and commit (ipython based)
Makefile option for gh-pages generation.
Update the numpy sphinx extensions from http://projects.scipy.org/numpy/browser/trunk/doc/sphinxext/
Updated the documentation repo location to the offical destination.
Tag now a prettier version number from setup.py
GStreamer and opencv player versions.
Seeking in video
Added video duration routines
First working version of radon and iradon
Implemented various filters and interpolation methods.
Test and image dimension checking
Tutorial
Created Video base class and handle backend import errors.
Tutorial edit
Phantom image example for radon transform
get_collection method interfacing ImageCollection
Docstring mods
Docstring optional
Tutorial 80 line length
Fixes
Probabilistic hough transform
Testing different accumulator clearing on good lines.
Merge
Hough tutorial
Formatting
Tutorial work
Tutorial, adjusted threshold
Improved line detection
Added a settle count for similar angles to resolve themselves
Debugging similar angles
Merge
Tutorial save figs
Fixes
Removed unused definition
Fixed opencv reversion to using cv.fromarray, fixed numpy datatype.
Fixed padding in radon, iradon. Tests for small images.
Ralf Gommers (47):
Add Stefan's io.py
Added a MultiImg class similar to the ImageCollection one, to function as the data structure for multi-image files.
Add MultiImg to __all__.
Remove Image class, and implement Stefan's suggestions.
Cleaned up ImageCollection and added tests for it.
Now really commit all changes.
Make as_grey settable, and provide reload function.
Fixes to MultiImage, added tests for it, plus a test TIF image.
Rename collection test file and fix it.
Added dtype keyword to imread plus a test for that.
Add dtype parameter to MultiImagei and ImageCollection.
Move docs to correct place inside class.
Change "Additional Parameters" to "Other Parameters".
Fix link in top corner to always point to main page.
Add a few docstrings.
Add support for MPL plots in the docs.
Update tasks, link to docstandard.
Remove "Functions" links/headings.
Clean up title of API reference.
Use same bullet level for functions and classes.
Fix up API generation.
Add build dir to .gitignore.
Change import to form used everywhere else.
Add documentation for rgb2hsv.
Implement hsv2rgb.
Add note on loss of precision.
Extract the type and shape checks into a common function.
Add RGB to XYZ bidi conversion.
Add docstrings for rgb2xyz and xyz2rgb.
Add description of the API to the module docstring.
Convert matrix lists to arrays, add RGB CIE color space.
Bug fix for imread so images that are already grey-scale do not get flattened.
Add NTSC color space.
Clean up the colorconv module docstring.
Remove NTSC color space.
Add a function to convert from any color space directly to any other space.
Remove explicit checks of image type and NaN, and correct dtype descriptor.
Add color spaces work to contributors file.
Add note on assumed data range.
Make "make test" work.
Add make coverage command.
Add some docs for 'make coverage'.
Minor changes to Tony Yu's palette_is_grayscale.
Fix the description of make coverage.
Fix link to issue tracker.
Remove note about patent issues with marching squares, was resolved on list.
Correct calling of coverage plugin, no spurious output anymore.
Riaan van den Dool (1):
GDAL plugin added.
Stefan van der Walt (728):
Initial framework for scikits.image.
Add Sphinx documentation.
Credit contributors.
Pull in LPI filters and add image reading (via PIL for now).
Refactor LPI filtering.
Fix and test filter API.
Merge branch 'master' of git://github.com/npinto/scikits.image
Move data files to common directory.
Move data directory.
Move data directory.
Merge branch 'master' of git at github.com:stefanv/scikits.image
Fix paths in colorconv.
Add Hough transform.
Add Makefile.
Correctly label targets as phony.
Update contributors.
Add link to mailing list.
Local licenses override.
Add ignores.
Update ignores.
Fix houghtf docs.
Add numpy-sphinx docs extensions.
Add API generation and fix documentation build.
Script to automatically build and upload docs.
Add license info to numpy sphinx extensions.
Generate cleaner API reference with autosummary tables.
Update license in docs.
Docs: clean up front page.
Docs: include license directly.
Docs: add header to table of contents.
Docs: update install and overview.
Docs: add inheritance diagram extension.
Fix docstring formatting.
Minor fixes to patch.
Remove executable flag.
Add SURF and SIFT feature file reader.
Add projective transformation / homography.
Fix markup in docs.
Add 3rd clause to license (thanks to David Warde-Farley for noticing the omission).
Only update gh-pages branch when committing new docs.
Add documentation on how to contribute to the SciKit.
Merge branch 'homography'
Update meta-data for PyPi.
Instructions on how to make a release.
Remember to generate docs when releasing. Also update version in setup.py.
Grab version number from setup.py for docs.
Move test data to global data dir and fix test.
Update version to 0.2dev in setup.py.
Rename collections module.
Update tasks list.
Add collections to io.__init__.
Change mail-archive link to Nabble.
Rename collection test file.
Add only_directives.py and plot_directive.py from numpy.
Remove dependency on only_directives.
Set plot directory prefix.
Plot_directive: copy source files to output.
Shorten and comment show_collection example.
Clean up output of plotting directive:
When pushing docs to github, rename _images to images.
Remove completed task: plots in docs.
Update license phrase for plot_directive.
Merge remote branch 'colbert/master'
Update .gitignore for whole scikit.
Update setup to build scikits.image.opencv.
Only build OpenCV extensions when source has been modified.
setup: Remove dependencies -- easy_install doesn't always know when
Clean up and fix setup.
Update build instructions.
Fix references scikits.gpu -> scikits.image.
Add setup.py in scikits/image.
Fix typo in opencv setup.
Clean up long lines and whitespace in opencv_backend.
OpenCV: clean up long lines and whitespace.
Allow unit tests to be run when OpenCV is not available.
Update contributors.
Expand OpenCV installation instructions.
Fix importing of opencv when libraries are not installed / extensions are not compiled.
Ignore build directory.
Merge branch 'master' of github.com:stefanv/scikits.image
Update contributors.
Merge branch 'docs' of http://github.com/rgommers/scikits.image
Clean up opencv namespace and imports.
Remove self-referencing import.
Remove task completed by Ralf.
Clean up scikits.image namespace.
Docs: In API generator, also recognise extensions.
Update tasks list.
Add MANIFEST.in for building source package.
Include auto-generated API files in distribution.
Fix _libimport when libcv is not available.
Unify libcv loader under different platforms.
Update tasks list and release instructions.
Merge with Chris's branch.
Fix bug in libimport.
Add package __version__.
Merge branch 'color' of http://github.com/rgommers/scikits.image
Add default version file.
Merge branch 'master' of http://github.com/sccolbert/scikits.image
Add dist to gitignore.
Generate new API only when the current version of the library is installed, otherwise revert to pre-generated files. [Patch by Helge Reikeras]
Fix opencv for systems without libraries installed.
Merge branch 'coverage' of http://github.com/rgommers/scikits.image
Plugin framework for image I/O.
Merge Chris's cv docs updates.
Merge branch 'docs' of http://github.com/sccolbert/scikits.image
cv: Fix function signatures.
cv: Add references section for adding URL to docs.
cv: Update Cython generated C-files.
Add new docs API files.
Add tests for IO plugins.
Restore plugin registry after testing.
Document _call_plugin.
Remove plugin functionality from io.py. Implement setting default plugins and querying the plugins available.
Merge branch 'master' of http://github.com/tonysyu/scikits.image
Add Tony as a contributor.
Check that scikit is built before generating docs for upload.
docs: Backup generated files before switching to docs branch.
Merge plugin branch.
Add QT4 image display plugin.
io: qt4 plugin: allow multiple images to be displayed. Keep track of Windows so that they don't get deallocated before they are closed.
Add Chris's plugin utility converter and wxpython plugin.
Rather use global than list to track app.
io: qt4: Use prepare_for display. Add demo snippet.
Fix q4thread typo.
Reorganise plugin infrastructure.
Second part of I/O infrastructure reorganisation.
Import PIL plugin using load_plugin.
Add shortest path algorithm. Refactor Cython build.
Merge branch 'io' of git://github.com/sccolbert/scikits.image
Minor text cleanups.
Add tests for prepare_for_display.
Add tests for window manager.
Fix subtle rstrip bug.
Fix subtle rstrip bug.
Fix subtle rstrip bug.
Describe plugins using .ini files, so that we don't need to import them to know their capabilities.
Merge branch 'coverage' of git://github.com/rgommers/scikits.image
io: Clean up 'available' according to Chris's review.
Merge branch 'io'
io: Allow plugin names that don't end on _plugin.
Merge branch 'spath'
doc: Add analysis API.
build: Fix c extension.
spath: Fix indexing errors.
io: Add plugin descriptions.
spath: Allow importing even when not compiled.
io: Track meta-data on plugins.
io: Add table of available plugins to module docstring.
analysis: Add as subpackage.
docs: Update API.
io: Combine use_plugin and load_plugin.
doc: Update API.
Update tasks.
io: Add plugin .ini files to setup as data files.
io: Add setup files for colour mixer.
io: Document colour mixer.
io: Add tests for colormixer.
Rename analysis -> graph.
Remove Cython-generated C-files.
doc: Update github push script.
Align image to top so that pixel tracking is accurate.
Add image stack.
Merge branch 'io' of git://github.com/sccolbert/scikits.image into io
Add basic tests for _histograms.
io: Fix Qt import accidentally removed.
io: Combine qt imports.
Update tasks list.
Add scikits.image.test.
Add image viewer script.
Remove `imsave` from matplotlib until fixed in their source.
Add user guide and documentation on plugins.
io: Add _app_show for matplotlib plugin.
Merge branch 'doc' of git://github.com/tonysyu/scikits.image
doc: Update dependencies.
Add scripts for launching without setuptools.
Merge branch 'io' of git://github.com/sccolbert/scikits.image into io
io: Move plugin tests to io/tests.
Merge branch 'threadingio' of git://github.com/sccolbert/scikits.image into io
Merge branch 'threadingio' of git://github.com/sccolbert/scikits.image into io
io: Fix one more instance of cdivision.
io: Throw exception when qt plugin can't be loaded.
io: Add imsave using PIL.
Merge branch 'io'
docs: Update API.
Update tasks.
Merge remote branches 'colbert/master' and 'colbert/luttables' into chris_merge
doc: Update API.
Set version to 0.2.
Update development status to 'beta'.
setup: Add MANIFEST.in.
Revert accidental change out of version.py
Document problem with 'python setup.py sdist upload'.
setup: Only check for new Cython file if Cython executed successfully.
setup: Fix Cython build.
Fix MANIFEST.
setup: Fix author field not to be tuple.
Release 0.2.1 to fix build issues.
Update release info now that setup is fixed.
Update tasks.
Fix with statement for 2.5.
io: Add null-plugin to simplify testing.
io: Fix doctests.
io: Remove unneccesary import.
Merge branch 'compatibility2.5' of git://github.com/tonysyu/scikits.image
Update TASKS.
Fix MANIFEST.in after report by Lev Givon.
Set version to 0.2.2 to release a bugfix sdist.
Clean up setup script.
Setting version to 0.3dev.
Update TASKS.
Merge branch 'damian-morphology' of git://github.com/deads/scikits.image into damian
morphology: Wrap long lines.
Add Zachy Pincus's trace_path routine for finding a low-cos path between a given start and end point.
trace_path: PEP7 fixes.
trace_path: Add tests.
trace_path: reformat docs
Add Zachary Pincus to contributors list.
spath: Remove debug prints.
Restore version file.
spath: Add Cython definition file to allow external use.
docs: Multiple columns in API reference.
docs: Update API.
Cython division fixes. Ignore version file after build.
docs: Add project title to header.
docs: Fix typo.
Add easy way to grab a logger.
docs: Update api.
Add docs for logger.
graph: heap: Cast known integer after division.
graph: spath: Fix documentation indentation.
morphology: Clean setup.
graph: mcp: Clean up long lines. Fix tests.
graph: Fix typo in heap docs. Wrap long line.
Merge speed fixes to heap.pyx from Zach.
Update links to CellProfiler code.
Add Zachary's freeimage wrapper. Fix Ctypes loader to use NumPy.
Add description file for freeimage plugin.
Add imread and imsave wrappers to freeimage plugin.
Wrap long lines in freeimage plugin.
In freeimage plugin, fix order of parameters to 'write'. Provide colour images to 'write' as CxMxN arrays.
Add ctypes API for freeimage plugin for use on 64-bit platforms.
In freeimage plugin, use array_interface for array construction.
Try to load both libfreeimage and libFreeImage.
Fix freeimage loading via array interface.
Use c_void_p to handle (*BYTE) in freeimage plugin.
In freeimage plugin, set DummyArray to writable, use correct dtype.
Found shorthand for constructing dtype str (thanks, Zach!).
Update links to OpenCV docs.
Clarify dependencies.
Add gitwash documentation.
Add imshow to PIL plugin.
Allow PIL plugin to read grey-level images with alpha layer.
More accurate docstring for imread.
Merge branch 'master' of git://github.com/sccolbert/scikits.image into chris
DOC: Add CellProfiler relicensing announcement.
ENH: Refactor ImageCollection to allow more general file loading schemes.
DOC: Add place to document API changes.
ENH: Add imread_collection to plugin framework.
Ignore vim swap files.
Fix link to api changes in docs.
Merge branch 'master' of git://github.com/luispedro/scikits.image
Modify numpy cimport order to satisfy Cython 0.13.
BUG: Hough failed on provision of angles argument.
Update Git docs with link to Fernando's post.
More updates to dev guidelines based on Fernando's post.
API: Remove dtype parameter from imread and collections. Remove as_grey from collections.
ENH: Add rgb2grey.
ENH: Add a free standing test for freeimage.
Merge branch 'io_cleanup'
Merge branch 'imagecollection'
Merge branch 'james_turner-fits_plugin'
ENH: Update Cython imports.
BUG: PIL tests should set plugin at setup.
DOC: Add explanation to test plugin.
BUG: Build fixes for Windows 7, Python 2.6 [patch by Amit Aides].
DOC: Note that grey-level morphological operations only support flat structuring elements [provided by Ingrid Fabris-Rotelli].
BUG: Fix Windows 7 build fix.
DOC: Update dependency to Cython 0.13.
ENH: Find libcv.so.2.1 in addition to just libcv.so.
DOC: Wrappers are now for OpenCV 2.1.
ENH: Fix cvUndistort2 according to OpenCV 2.1 calling convention.
ENH: Add test for cvUndistort2 with new intrinsics provided.
ENH: Add parameter checking for cvCalibrateCamera2.
ENH: Add opencv wrapper for FindFundamentalMat.
BUG: Include default parameters for cvFindFundamentalMat.
BUG: Fix status shape in cvFindFundamentalMat.
BUG: OpenCV checks shape of memory provided.
BUG: Compare ``method``, not ``status``.
BUG: Status should be 2-dimensional.
ENH: Add test framework for cvFindFundamentalMat.
DOC: Note about Ubuntu + cv + Atlas problem.
BUG: Remove status parameter that causes OpenCV 2.1 to complain.
BUG: Fill status with zeros. Squeeze dimensions of F.
ENH: Complete test for cvFindFundamentalMat.
DOC: Better document test for cvFindFundamentalMat.
Merge branch 'OpenCV_2.1'
Merge branch 'cvFindFundamentalMat'
Update tasks.
Fix Cython build on Windows [patch by Christoph Gohlke].
Merge branch 'mcp_infinite' of ssh://github.com/zachrahan/scikits.image
ENH: Allow stand-alone execution of ctmf test suite.
ENH: Remove unnecessary C defines.
ENH: Stylistic changes.
DOC: Update median_filter doc to numpy format.
ENH: Clean up whitespace and remove class in ctmf tests.
ENH: Execute median filter without mask array by default.
DOC: Give credit to Lee Kamentsky and Thouis Jones.
Merge constant time median filter by Lee Kamentsky and Thouis Jones.
BUG: Fix building under Python 3.
BUG: Fix mcp tests.
BUG: Cython build: Open file correctly under Python 3 [patch by Nadav Horesh].
BUG: Python 3 compatibility fixes by Christoph Gohlke.
BUG: More Python3 fixes by Christoph Gohlke.
BUG: Do not break on import if PIL isn't available.
BUG: Fix filename handling under Python 3.
BUG: Do not rely on PIL by default.
ENH: Also scan /home/stefan/lib for freeimage.so.
DOC: Update tasks.
BUG: Fix sed in docs build script.
DOC: Update tasks.
ENH: morphology: Add connected components labelling.
Merge remote branch 'dfarmer/dfarmer-filters-canny'
DOC: Add Dan Farmer as contributor.
ENH: Add faster numpy hough version as well as a Cython version. Add appropriate setup.py files to build the Cython module. Fix hough tests.
Update Chris's contribution.
BUG: Import PIL.Image correctly. Skip tests if not available.
DOC: morphology: Document connectivity in ccomp.
Merge branch 'ccomp'
ENH: Minor clean-ups to edge-detection patch.
DOC: Add Pieter Holtzhausen as a contributor.
Merge branches 'holtzhau_edge_filters' and 'ccomp'.
BUG: Correctly convolve integer and floating point arrays.
ENH: graph: Fix typo.
Merge remote branch 'zach/FreeImage64'
Merge remote-tracking branch 'emmanuelle/tv_denoise'
DOC: Update contributors.
Merge Dan Farmer's Windows platform updates to the NumPy ctypes library loader.
DOC: Update contributors.
Merge Tony Yu's tv denoise fixes.
Allow test_sift to be ran independently.
_hough_transform: Type fix.
Update contributors.
Merge documentation build system fixes by Pieter Holtzhausen and Tony Yu.
Update contributors.
DOC: Update coverage instructions.
ENH: Add default target for docs Makefile.
ENH: Ignore .coverage output.
DOC: Add new project URL to setup.py.
DOC: Add gitwash generator code.
DOC: Use the correct suffix when building gitwash docs.
DOC: Add more prominent link to gitwash docs.
DOC: Rewrite project overview.
DOC: Update gitwash generated docs.
TST: Test both Cython and Python versions of the hough tf.
DOC: Add missing space.
Remove outdated push_github script.
DOC: Save plots with tight bounding boxes.
DOC: Setup plot_directive.
DOC: Update hough docstring.
DOC: Also copy plot files to html doc output.
ENH: Add hough transform plot.
ENH: Update gitignores.
Merge Neil's fixes, including those for py3k.
Update contributors.
DOC: Retheme docs, credit IPython authors.
Merge Tony's documentation enhancements.
DOC: Shrink table for better layout.
DOC: Update contributors.
DOC: Turn gh-pages into phony target.
DOC: Fix repo address in installation instructions.
DOC: Minor cleanups. Strike through completed items on TODO list.
DOC: Deploy current docs to scikits-image.org/docs/dev.
Merge coverage states into main .css.
DOC: Update contributors.
DOC: Add coverage table to Makefile.
DOC: Complete coverage bar.
DOC: Ignore generated coverage table.
Use absolute path for scikits.image.data_dir.
Correctly detect missing FreeImage.
Update license to credit team.
Merge pull request #17 from emmanuelle/change_repo_name
DOC: Describe usage of different types (first draft).
DOC: Fix typo in data types description.
Use only snake image.
Adjust orange snake brightness. Add --no-plot flag.
Add SVG logo with text and Makefile to convert to png.
Match scikits.image directory structure.
Merge Tony's logo generator.
Match logo filename used in website.
Also produce a scaled down version of the logo.
Add logo to generated documentation.
Merge branch 'logo'
DOC: Note that data type document is still preliminary.
Merge branch 'dtype_info'
DOC: Update Tony's contributions.
DOC: Update release instructions.
Add summed area table, using Nicolas Pinto's suggestion for a pure
DOC: Update sat docs after feedback from Brian Holt.
Merge branch 'summed_area_table'
Merge radon transform by Pieter Holtzhausen.
Merge pull request #22 from mandli/master
ENH: Rename sat and sat_sum to be in-line with CV community convention.
ENH: Expose data module. Currently just provides scipy's lena in a more convenient location.
DOC: Update tv example to use data module. Rewrap some text.
Merge Emmanuelle's work on documentation examples / build.
Merge pull request #24 from tonysyu/doc_tweaks
Add Cython homography implementation. Not well optimised yet.
ENH: Minor clean ups of data loader.
DOC: Update contributors.
Merge branch 'data_loader'
ENH: fast_homography: 20x speed improvement.
BUG: fast_homography: Fix mirror mode.
Fix mirror mode. Update docstrings. Update tests
BUG: fast_homography: Fix constant mode.
Import fast homography as transform.fast_homography.
Merge radon/fast_homography.
ENH: Use fast homography instead of PIL's rotate. Minor cleanup.
Add drawing module with Bresenham line.
ENH: Use new draw module to construct HOG image.
ENH: Minor setup.py cleanups.
BUG: Remove numpy 2 usage of .astype.
Merge pull request #33 from amueller/median_filter_minor
ENH: Add dtype converters.
DOC: Fix dtype converter docstring typos.
BUG: Fix typo in dtype converter integer list.
DOC: Warn about OpenCV deprecation.
TST: Make LPIFilter tests operate on a smaller image, since they take long to execute, and cameraman.png is now bigger than before.
DOC: Move radon example to gallery.
DOC: Use correct location of blank_image in example generator.
DOC: Update Makefile's clean target.
BUG: Always return contiguous array from colour conversion.
BUG: fast_homography should ensure input data is contiguous.
BUG: Fix fast_homography test based on new lena.
BUG: Use local lena data file in tv_denoise test.
DOC: Update contributor howto.
ENH: Add img_as_ubyte.
Merge branch 'dtype_converters'
BUG: Add 'util' subpackage.
Merge pull request #35 from amueller/color_converters_dtype
Merge pull request #29 from amueller/canny_usability
Merge pull request #36 from amueller/dtype_minor
PKG: Allow make clean to run twice in a row.
PKG: Remove both .so and .pyc files in find . -name "*.so" -o -name "*.pyc" | xargs rm -f.
BUG: Make test file non-executable.
BUG: Add 'color' subpackage.
BUG: Adopt lena example to use new data module.
Merge pull request #38 from amueller/dtype_minor
BUG: Fix default log-level.
Merge Andy's plugin cleanups require to build the Debian package.
PKG: Remove empty placeholder files.
PKG: Do not build Cython files on clean.
Merge pull request #40 from emmanuelle/watershed
Add drawing module with Bresenham line.
ENH: Use new draw module to construct HOG image.
BUG: Add 'draw' and 'feature' sub-modules.
Merge pull request #28 from stefanv/hog
Merge pull request #27 from stefanv/radon
Merge furhter improvements to histogram of gradients.
Merge pull request #12 from holtzhau/hough
Merge pull request #10 from holtzhau/video-io
Qt-based image reading.
DOC: Update contributors.
Merge video I/O.
BUG: Fix watershed tests.
BUG: Use integer image values as expected in tv denoise test.
DOC: Move Hough tutorial to examples gallery.
DOC: Remove PIL dependency.
DOC: Release notes for 0.3.
DOC: Update release notes.
PKG: Update version number for release.
DOC: Update doc url in release notes.
PKG: After release, update version to 0.4dev.
DOC: Update release instructions (run setup.py register to login to pypi).
Merge pull request #42 from riaanvddool/gdal_plugin
DOC: Typo in release notes.
DOC: Fix broken link in watershed docs.
DOC: Do not rebuild the doc versions index automatically.
PKG: Also include .pxi files in the source package.
PKG: Add python 3 and operating system tags to setup.py.
BUG: Untabify video.py.
Merge pull request #48 from cgohlke/patch-5
Merge pull request #47 from cgohlke/patch-4
Merge pull request #49 from cgohlke/patch-6
Merge pull request #50 from cgohlke/patch-7
Merge pull request #52 from cgohlke/patch-15
Merge pull request #51 from cgohlke/patch-8
Merge pull request #53 from cgohlke/patch-1
Replace .npy files by .npz. Smaller, and avoids pickling problems on Python 3.
Use .npz test data in opencv tests.
Merge npz fixes from Christoph Gohlke.
Fix another instance of an .npy file.
Merge npy -> npz transition.
Remove OpenCV wrappers for 0.4 release.
BUG: Fix scikits.image.test.
DOC: Update contributors.
Remove empty gitwash directory in order to fix submodule.
DOC: Add gitwash as a submodule.
DOC: Use correct repo URL in gitwash.
DOC: Rewash the git docs.
Merge pull request #56 from cgohlke/patch-1
Merge pull request #59 from cgohlke/patch-2
Merge pull request #58 from cgohlke/patch-3
Merge pull request #63 from amueller/matplolib_plugin
Merge remote-tracking branch 'nelle/skimage' into nelle_varoquaux_skimage_rename
PKG: Move remaining files that changed since skimage rename.
DOC: Add Nelle to contributors.
Rename package to ``skimage``.
DOC: Update repo address.
PKG: Import skimage instead of scikits.image in changes made since rename.
DOC: Update gitwash.
DOC: Minor spacing fixes in docstrings.
Merge Emmanuelle's port of CellProfiler's medial axis skeletonization.
Merge pull request #67 from NeilYager/neil_yager-alpha
ENH: Add binary convex hull computation.
ENH: Add coins image.
DOC: Better docstring for coins.
ENH: Pre-allocate coordinate corner array.
ENH: Improve convex_hull execution speed.
ENH: Only perform convex hull on select candidate pixels. Gets us a factor 30 speedup.
Merge pull request #77 from NeilYager/neil_yager-homography-docstring
PKG: Move io to _io (closes #39).
Merge pull request #73 from tonysyu/fix-ctmf
DOC: Update tasks list.
DOC: Add url for convex hull algorithm overview.
ENH: In test, do not compute hull twice.
BUG: Allow test suite to pass with scipy < 0.9.
Update test data set descriptions. Convert 'coins' to grey-level image.
DOC: Update tasks with a link to a free qhull implementation.
Merge pull request #76 from stefanv/coins
ENH: Rename convex_hull to convex_hull_image to allow later clean API addition of convex_hull with labels.
Merge pull request #75 from stefanv/convex_hull
ENH: Use hashes of .pyx files to see whether re-compilation is needed or not.
Merge pull request #74 from stefanv/cython_hash
Merge pull request #78 from emmanuelle/doc_canny
DOC: See also to skimage.sobel instead of ndimage.sobel.
ENH: Add verbose test function.
BUG: data: Fix chessboard file name.
Merge pull request #79 from zachrahan/mcp-64bit
DOCS: Tighten borders around image in GLCM example.
Merge branch 'neil_yager-greycomatrix'
DOC: Use convex_hull_image instead of convex_hull.
DOC: Improve example gallery layout.
BUG: Import find_contours from correct location.
ENH: Whitespace cleanup.
REF: Convert find_contours to Cython.
BUG: Import imread from renamed _io module.
DOC: Update contributors.
DOC: Add contour finding example.
STY: Clean up docstrings.
DOC: Bold headers for Notes, Reference, etc. sections in reference docs.
STY: Remove unused imports.
DOC: Fix team name in license and docs.
Merge pull request #82 from zachrahan/find-contours
DOC: Fix some scikits.image mentions.
DOC: Script to generate contributors.
DOC: 0.4 release notes.
BUG: Python 3 fixes.
Release 0.4.
Move to 0.5 development.
DOC: Update release process.
Merge pull request #84 from cgohlke/patch-1
Merge branch 'master' of github.com:scikits-image/scikits-image
BUG: Wrong distribution name.
DOC: Update installation instructions.
Merge pull request #89 from cgohlke/patch-4
BUG: Fix selective plugin loading. Provide function to inspect current plugin configuration.
ENH: Use dtype scaling routines in qt and pil plugins.
ENH: Tie imshow and _app_show together.
Merge pull request #90 from stefanv/plugin_load_fix
DOC: Update Cython dependency.
Merge pull request #96 from emmanuelle/glcm
Merge pull request #97 from cgohlke/patch-1
DOC: Update 0.4 release notes (wrong gallery url).
Ignore auto examples.
BUG: Correctly load bi-level images via PIL.
Merge pull request #102 from tonysyu/pil-big-endian
ENH: Allow choice between 4 and 8 neighbor mode. Improve documentation.
Merge pull request #104 from tonysyu/pil-big-endian
DOC: Add index of tutorials to user guide.
DOC: Add Emmanuelle's SciPy India segmentation tutorial.
BUG: Dispatch threads to process entire image.
ENH: Add background labelling.
DOC: Update contributors.
DOC: Explain why bincount is used to histogram integer arrays.
DOC: Rename equalize example to match function name.
DOC: Move around plot statements so that all axes are labeled.
Merge branch 'tony-exposure'
DOC: Display thresholding example with gray colormap.
DOC: Add script to plot GitHub pull-request activity.
DOC: Better x-axis labelling of PR plot.
BUG: Fix OpenCV array conversion in video loader.
DOC: Add script to randomly link to a gallery image.
DOC: Generate correct link to gallery and build javascript before gh-pages upload.
DOC: Ignore random.js generated file.
BUG: Edge detection routines returned images with invalid ranges [0-255] but dtype float.
Merge pull request #115 from stefanv/edges_float_conversion
ENH: Use nearest neighbor interpolation by default in matplotlib plugin.
Merge pull request #112 from zachrahan/freeimage-64-bit-cleanup
STY: Whitespace cleanup freeimage patch.
Merge pull request #118 from 'zachrahan-freeimage-new-metadata'
ENH: When displaying images using matplotlib, use the grey colormap by default.
Merge pull request #110 from tonysyu/peak-detection
Merge pull request #99 from cgohlke/patch-2
ENH: Add contrast stretching to histogram equalization example.
DOC: Fix some typos in plot_equalize example.
ENH: Cleanups as suggested by Tony.
PKG: Rename scivi to skivi.
PKG: Remove version file that should be auto-generated.
Merge pull request #121 from tonysyu/dtype-convert-updates
PKG: Add back version file, but with version unbuilt-dev.
BUG: Fix import of harris.
Merge pull request #123 from tonysyu/doc-user-guide-dtypes
Merge pull request #122 from tonysyu/doc-css-changes
Merge pull request #107 from tonysyu/rescale-intensity
DOC: Show version of skimage that was used to build example.
Merge pull request #126 from michaelaye/master
DOC: Ignore all auto generated results.
Merge pull request #127 from tonysyu/module-docstrings
DOC: Expand on Tony's module summary.
Merge remote-tracking branch 'tonysyu/versions-in-sidebar' into tonysyu-versions-in-sidebar
DOC: Refactor Javascript for listing doc versions to only have the version in one place.
PKG: Update release instructions to update doc versions javascript.
DOC: Use absolute path to versions javascript.
Merge PR #128 from 'tonysyu/versions-in-sidebar'.
DOC: Add arrow to indicate current doc version.
Safely check doc version in javascript.
DOC: Link logo to main webpage. Add navigation side bar.
DOC: Fix Other Parameters section.
ENH: Fix dtype conversion before hsv2rgb and rgb2hsv.
ENH: Add grey2rgb.
Merge pull request #129 from tonysyu/minor-build-fixes
Merge pull request #131 from tonysyu/versions-sidebar-tweaks
DOC: Fix outdated docstring.
Merge pull request #132 from tonysyu/doc-dtype-tweaks
DOC: Update dependencies.
DOC: Update installation instructions to match those on web page.
DOC: Add FreeImage as optional dependency.
Use matplotlib as the default display/read plugin.
ENH: Add show() to PIL plugin to support more consistent code over different plugins.
DOC: Import hog from skimage instead of scikits-image. Rescale the output histogram to be more visible.
Merge PR #135 from 'bdholt/enh-hog' after rebasing.
DOC: Fix formatting typos in HoG example.
BUG: Fix FreeImage tests.
DOC: Add FreeImage as optional dependency.
DOC: Import hog from skimage instead of scikits-image. Rescale the output histogram to be more visible.
DOC: Fix formatting typos in HoG example.
STY: Whitespace cleanup.
BUG: Fix FreeImage tests.
Merge PR #134 from 'zachrahan/freeimage-linuxload'
Merge pull request #139 from cgohlke/patch-3
Merge pull request #141 from emmanuelle/user_guide
Merge pull request #142 from tonysyu/fix-readme-file
Merge pull request #138 from poilvert/array_views
Merge pull request #143 from tonysyu/array-view-docstring
BUG: Fix data range in exposure tests.
BUG: Use PIL as default imread plugin, since MPL imread is still somewhat broken.
Merge pull request #148 from amueller/doc_error_message
Merge PR #147 from 'tonysyu/fix-gallery-sizes
DOC: Update tasks.
PKG: Move README.md to README.rst.
Merge pull request #151 from tonysyu/cleanup-tasks
Merge pull request #152 from cgohlke/patch-1
Merge pull request #156 from tonysyu/fix-tifffile-test
Merge pull request #155 from cgohlke/patch-4
DOC: Add image colorization to tasks.
DOC: Add v0.5 release notes.
PKG: Update version to 0.5.
PKG: Update doc versions.
PKG: Move development to 0.6dev.
DOC: Update release instructions.
DOC: Fix typo in 0.5 release notes.
DOC: Update release instructions.
PKG: Change gitwash submodule git remote so that ShiningPanda can pull that repo.
TST: Try to get Jenkins build working via Tox.
ENH: Remove annoying version.py.
Merge pull request #157 from tonysyu/fix-plugin-call
PKG: Fix version import to allow build on 3.2.
BUG: Fix imports for Python 3.2.
Merge pull request #160 from stefanv/python3.2-fixes
BUG: Fix typo in montage--xrange is no longer supported.
BUG: Correctly fix zip import for Python 3.2. 2to3 simply removes the itertools import line.
ENH: Add freeimage as fallback io plugin, to allow buildbot to read test images.
ENH: Allow forced copy of data upon type conversion.
Explicitly use float64 instead of float.
ENH: Do not use global root logger state in skimage.
Merge pull request #171 from emmanuelle/modif_radon
Merge pull request #176 from tonysyu/peak-fixes
DOC: Add Yaroslav Halchenko to contributors.
Merge pull request #177 from ahojnnes/draw-polygon-alt
BUG: Provide bresenham as backward compatible name for line.
Merge pull request #179 from neurodebian/master
Merge pull request #169 from stefanv/local_logging
Merge pull request #181 from tonysyu/fix-logging-py26
Merge pull request #178 from ahojnnes/adaptive-thresholding
BUG: Remove import of non-existent module.
DOC: Add CSS for LaTeX math.
PKG: Add first Debian packaging files.
PKG: Depend on Cython >= 0.13.
PKG: Use dh_python instead of py_support to build. Add 'noclean' build option.
PKG: Progress towards doc building.
PKG: Working Debian package.
PKG: Add scipy build dependency (when the API is built, scipy is imported by some packages).
PKG: Bring Debian package files up to date with 0.5.
PKG: Fix timestamp timezone.
PKG: Add template for skivi man page.
PKG: Add first Debian packaging files.
PKG: Depend on Cython >= 0.13.
PKG: Use dh_python instead of py_support to build. Add 'noclean' build option.
PKG: Progress towards doc building.
PKG: Working Debian package.
PKG: Add scipy build dependency (when the API is built, scipy is imported by some packages).
PKG: Bring Debian package files up to date with 0.5.
PKG: Fix timestamp timezone.
PKG: Add template for skivi man page.
Merge branch 'yarik_debian' into debian
DOC: Update man page.
PKG: Update copyright.
Merge pull request #187 from tonysyu/morph-cleanup
Merge pull request #186 from holtzhau/radon_fixes
Merge pull request #182 from tonysyu/threshold-example
PKG: Require Python 2.6.
PKG: Update SciPy and matplotlib dependencies.
PKG: Update version.
BUG: Fix Python 3 syntax error.
BUG: Ensure that the appropriate I/O plugin is used in the test suite.
BUG: Fix plugin import on systems without PIL or FreeImage.
TST: Increase radon transform threshold to make test more robust.
Thouis (Ray) Jones (2):
Constant time per pixel median filter
Fix docstring to match new default value and constraint for radius.
Tony (5):
Add palette images
Fix imread so palette images are converted to grayscale or RGB images
Add test for palette_is_grayscale
Add list of build requirements
Rewrite as_grey property without enhanced property decorators to be python 2.5 compliant
Tony S Yu (143):
Remove print statements
Fix order of keyword arguments to _tv_denoise_2d.
Make test_tv_denoise_2d more strict.
Reorder eps and weight keyword args to tv_denoise
Use matplotlib's plot_directive.py for Sphinx documentation.
Fix import in apigen.py, which fails when other scikits are present.
Change Makefile so that autogenerated API docs are removed with "make clean".
Replace plot_directive.py with copy from matplotlib's trunk.
Fix lengths of restructuredtext section headers in docs.
Fix docstring so Sphinx doesn't complain about indentation.
Remove index.html template and use markup in index.txt instead.
Add version number to index page of docs
Format front page so it looks similar to old template.
Initial commit with working logo generator
DOC: Fix order of parameters passed to cp
DOC: adjust default table styling for a cleaner look
DOC: make index.html the master doc
DOC: fix copyright
Add parameter to flip structuring element about its origin
Remove unnecessary if-block.
Reuse open/close operations for white/black tophat
Add tests for correct behavior of square structuring elements
Fix morphological open/close for square structuring elements with even sides.
Move test functions to test class
Add tests for rectangular structuring elements
Replace flip parameter in erode/dilate with shift_x and shift_y
Minor fix to docstring
Improve docstrings in grey morphology module
Add examples to grey morphology docstrings
Specify that input arrays to grey morphology filters must be uint8
Reformat doctests so that tests pass
Require median filter radius >= 2
Switch radius and mask arguments for median_filter
DOC: Add note about changed arguments for median_filter
Merge pull request #81 from NeilYager/neil_yager-io_fix
Merge pull request #85 from cgohlke/patch-2
Add thresholding module with Otsu's method to calculate threshold.
Rename otsu_threshold to threshold_otsu
Add handling for images with negative integers
Change docstring threshold_otsu output
Remove binarize function
Add thresholding example
Remove thresholding example from user guide in favor of docstring example.
Fix minor typo in docstring example
Remove thresholding subpackage and integrate into filter subpackage.
Merge pull request #91 from stefanv/imshow_plugin_scales
Minor changes in wording.
Rename `bins` parameter to `nbins`.
Merge pull request #101 from stefanv/pil_bilevel_png
Fix imread regression for int16 images with PIL plugin.
Add test for reading uint16 image
Add test using big-endian uint16 image.
Add example for threshoding
Improve thresholding example
DOC: emphasize annotation in histogram.
Merge pull request #98 from tonysyu/thresholding
Add exposure module with histogram equalization function
Change API for equalize_hist and cumulative_distribution.
Rename equalize_hist to equalize and minor cleanup
Remove `density` parameter in `histogram`
Add rescale_intensity function with test and example.
Merge pull request #108 from WarrenWeckesser/ph-doc-fix
Merge pull request #106 from NelleV/harris_corner_detection
Minor modifications to Harris corner detector
Fix peak detection algorithm.
Refactor peak detection algorithm from Harris detector.
Make test more robust.
Use ndimage.maximum_filter to simplify peak detection.
Rename peak_min_dist to peak_local_max.
Move harris corner detection from filter to feature subpackage.
Fix casting error when converting from int8 to uint16.
ENH: Add tests for full coverage.
ENH: Check that float images are between 0 and 1.
Merge pull request #1 from stefanv/tony_rescale_intensity
Merge pull request #105 from stefanv/label_cleanup
DOC: Change body layout so that it doesn't wrap around sidebar.
DOC: Adjust font sizes.
DOC: Remove duplicate css definition.
DOC: Increase spacing between paragraphs.
DOC: Adjust heading size and color.
DOC: Adjust header and link colors.
DOC: Remove duplicate "pre" formatting.
DOC: Adjust link font in contentstable.
DOC: Tweak layout of contents table.
DOC: Adjust spacing between sections of sidebar.
Fix test: clip image that exceeded float range.
DOC: Adjust size of tt text (i.e. ``text``).
DOC: Adjust spacing after `pre` block.
DOC: Fix grid layout of gallery.
DOC: Improve description of image data types in user's guide.
Merge pull request #116 from stefanv/matplotlib_interpolation
Merge pull request #120 from stefanv/scivi_rename
DOC: Add description of subpackages to package docstring.
DOC: Add sidebar section listing package versions.
Minor fixes to build process.
DOC: Use CSS to style versions sidebar.
DOC: Add (u)int32 data type ranges to table.
DOC: Tweak superscript formatting.
DOC: Add example of bad dtype conversion.
Merge pull request #124 from stefanv/doc-gallery-show-version
Merge pull request #130 from stefanv/grey2rgb
DOC: Convert README to markdown for proper github rendering.
Merge pull request #136 from stefanv/plugin_consistency
Clarify difference between view_as_blocks and view_as_windows.
DOC: Limit figures to 8 inch widths.
DOC: minor example clean up.
DOC: tweak image sizes in gallery.
DOC: Add note about figure width to developer guide.
Merge pull request #146 from stefanv/imread_default_plugin
DOC: Add hidden toctree for main index.
DOC: Add toctree to example gallery.
DOC: Add hidden toctree to tasks
DOC: Remove completed tasks.
DOC: Delete completed task.
DOC: Remove "completed" labeled-image plotting task.
Merge pull request #153 from cgohlke/patch-2
Merge pull request #154 from cgohlke/patch-3
Fix test when tifffile plugin is not available.
FIX: Check plugin is loaded before checking its functions.
Merge pull request #159 from 'stefanv/version_remove'
Remove version.py reference in Makefile
Merge pull request #163 from stefanv/convert_with_copy
Fix import
Deprecate threshold and replace absolute and relative thresholds.
Change threshold test from >= to >.
Fix: return empty list for flat image.
Add docstring comment about flat peaks.
Rename for clarity
ENH: Add `num_peaks` to limit the number of peaks.
Merge pull request #166 from 'vincent-albufera/exemple_modif'
BUG: fix logging for Python < 2.7.
DOC: Add example of adaptive thresholding.
Change "text" image to grayscale.
Add "page.png" and use for threshold example.
Merge pull request #185 from stefanv/doc_math_css
Remove unused imports
Rename greyscale morphology functions.
Make test module runnable.
Fix dtype compatibility for functions in morphology.grey
Replace `import *` with `import grey`.
Remove unused variable.
Add `__all__` to grey module.
Rename test module to match module.
Vincent Albufera (4):
No interpolation when displaying small patches in example
Addition of examples in the harris and peak local max function
Addition of examples in the harris and peak local max function
Addition of examples in the harris and peak local max function
Warren Weckesser (1):
DOC: fix probabilistic_hough docstring--use correct keyword arg in the docstring, plus a few spacing tweaks.
Yaroslav Halchenko (42):
PKG: Let's stay at slightly lower level of debhelper compatibility
PKG: let's use 3.0 (quilt) format for the pkg
PKG: must be a non-Debian-native version, so added -1 for Debian revision
PKG: pkg should match the module name (hence python-scikits.image) + Uploaders (me)
PKG: mangle the name of the downloaded tarball from github
PKG: Use dh_installdocs to install additional docs instead of incorrect cp
PKG: lintian-override for -doc to ship the license.txt
PKG: use dh_links (with links specified in .links) to use system-wide installed jquery and underscore
PKG: do not use system-wide underscore.js for now
PKG: ignore changes in version.py while preparing source package
PKG: Boosted standards policy compliance to 3.9.2 (no changes needed iirc)
adjusting version to match git snapshot
source name should match in changelog and control
adjusted extend-diff-ignore to exclude skimage/version.py
libfreeimage3 into *Depends
removing residual of scikits.image in favor of skimage in debian/rules
python-imaging into Build-Depends and Recommends
fixing some typos and minor in debian/rules
PKG: Let's stay at slightly lower level of debhelper compatibility
PKG: let's use 3.0 (quilt) format for the pkg
PKG: must be a non-Debian-native version, so added -1 for Debian revision
PKG: pkg should match the module name (hence python-scikits.image) + Uploaders (me)
PKG: mangle the name of the downloaded tarball from github
PKG: Use dh_installdocs to install additional docs instead of incorrect cp
PKG: lintian-override for -doc to ship the license.txt
PKG: use dh_links (with links specified in .links) to use system-wide installed jquery and underscore
PKG: do not use system-wide underscore.js for now
PKG: ignore changes in version.py while preparing source package
PKG: Boosted standards policy compliance to 3.9.2 (no changes needed iirc)
PKG: Adjusted upstream version to match the reality
PKG: We should aim for compliance with up-to-date policy 3.9.3 ;-)
PKG: actually install the pre-crafted manpage
PKG: Adjusted lintian-overrides for now having no scikits. namespace and no license.txt
PKG: Move any handing of docs under if_nodoc, no need for custom mv if there is .docs
PKG: rudimentary gbp.conf to ease building with git-buildpackage
PKG: fixed forgotten scikits.statsmodels reference ;-)
PKG: simplified and unified debian/copyright to match released 1.0 version of DEP5
PKG: actually we should only care about "requested" not all "supported" python version
PKG: fixed debian/watch, made it now use githubredir.debian.net
PKG: added .doc-base file
Merge commit 'v0.5-100-gfeb3e92' into debian
adjusting debian/changelog -- preparing for the first ever upload to Debian proper
Zach Pincus (24):
Fix memory leak due to not properly using __cinit__ in heap classes
Fixed (?) segfaults on 64-bit platforms
use 64-bit safe types
Fix another 64-bit corner case
fix _spath error
Add contour-finding
Make it work
Move to measure submodule
add _find_contours.c
Tighten up _find_contours.pyx
Clean up void-pointer handling to clarify intent and fix multipage 64-bit bugs
Make library-loading more robust and provide better errors
Fix indentation error
ENH: Add metadata reading functions
DOC: Fix read_multipage docstring
ENH: Clarify FreeImage IO flags, improve tests, and fix documentation
ENH: load libfreeimage based on case-insensitive libname prefixes
BUG: Make it work actually...
STY: Clarify logic of code for FreeImage loading.
ENH: Add tifffile IO plugin
Fix description of tifffile plugin
ENH: Add tifffile tests and improve freeimage tests
Fix copy/paste error
BUG: Fix tests
Zachary Pincus (12):
Modify _build.py:cython() to be cleaner:
Add fast binary heap classes (from Almar Klein)
Added classes for minimum-cost-pathfinding through n-d arrays.
Rewrite spath.shortest_path to use new mcp classes
Finish commits of changes to graph: __init__ and setup and remove old cruft.
Fix heap.pyx to work when infinite values are pushed.
Performance fix for heap; correctness for _mcp
Oops: actually fix heap performance problem...
palette support for saving 8-bit greyscale images
fix infinite-handling in mcp and precision issues in heap
allow negative-cost elements
add tests
andy (9):
Convenience functions to load example images.
hog: uniform filter instead of integral image
pep8
use dtype.img_as_float in _convert for colorspaces.
bug: color convertion. make tests arrays float.
don't use np.empty_like with dtype argument to be numpy 1.5 compatible.
have preferrence list of plugins instead of just trying "null" and "pil"
null_plugin gets imread as promised in __ini__.py of plugins
pep8
cgohlke (33):
Fix ValueError on win-amd64
Fix `TypeError: must use keyword argument for key function` on Python 3
Work around `AttributeError: 'module' object has no attribute 'BufferedIOBase'` on Python 2.7+, Windows
Fix `AttributeError: 'function' object has no attribute 'func_name'` on Python 3
Fix watershed failures on Python 3
Fix Python 3 import error
Fix Python 3 import error
Fix Python 3 import error
Edited scikits/image/morphology/watershed.py via GitHub
Edited scikits/image/draw/draw.py via GitHub
Edited scikits/image/morphology/__init__.py via GitHub
Fix ImportError on Python 3
Fix: use npz instead of npy format for matlab-output files
Fix: use npz instead of npy format for matlab-output files
Fix: don't run all scikits tests when running scikits.image.test()
Fix print statements missed by 2to3
Update URL in package description
Remove print statements
Remove print statements
Fix ImportError on Python 3
Fix ImportError on Python 3
Fix ImportError on Python 3
Fix docstring use_plugin example
Workaround 16 bit image to numpy array conversion bug in PIL
Fix reading 16 bit big-endian images with PIL
Rewrite dtype._convert function
Merged some code paths
Restore numpy 1.5 compatibility
Restore previous io plugins
Fix invalid Python 3 syntax
Fix invalid Python 3 syntax
Fix conversion of bytes to str on Python 3
Fix TypeError on 64 bit platforms
emmanuelle (32):
Initial integration of CellProfiler's watershed module
Removed unnneeded code to compute strides
Added the is_local_maximum function, that is useful to determine
Import is_local_maximum in __init__.py
New example for the gallery: watershed
ENH: watershed docstring
ENH: give a short definition of rank order in docstring
Merge pull request #62 from tonysyu/fix_morph_symmetry
Renaming: scikits.image -> skimage
ENH: more efficient binary operation in skeletonize
Merge branch 'neil_yager-skeletonize'
First integration of cell profiler medial axis transform
Medial axis transform (skeletonization) from cell profiler
ENH address comments on PR #65 made by Stefan and Neil
Moved cython file that had not been automaticall moved by rename
scikits/image -> skimage in examples
DOC: Canny filter. Improved docstring + example for the gallery
Short tutorial on segmentation for the user guide +
ENH contours of segmentation in segmentation tutorial
BUG: greycomatrix, one of the tests was failing for symmetric case
Merge pull request #1 from tonysyu/scipy_india
Random walker algo for segmentation + example
__init__.py in segmentation submodule
More explanations about the algorithm
Cross-See also in watershed and random walker
ENH: addressed Tony's comments (renaming of functions, doc)
ENH Removed unused argument in random_walker_segmentation
ENH Tony's comments on random walker
Merge branch 'random_walker'
User guide: first draft of "getting help"
getting_help file
Merge pull request #162 from vincent-albufera/improve_doc
nich2o (4):
corrected path.join in test_lpi_filter.py
added a color image
added rgb2hsv color conversion
updated __init__.py in color
sccolbert (77):
OpenCV infrastructure largely in place. A test function wrapped: cvSmooth()
wrapped 7 more functions
added unit-tests for existing functions. and prelimenary docstrings
updated tests to be shorter and OO. Deleted unnecessary data files.
added cvCornerSubPix and cvResize impementations. Added a bash build script.
added a bash script for build to holdover until a setup.py solution
added cvGoodFeaturesToTrack. Added clone_array_shape function.
added a setup.py, moved the data files to the head folder.
fixed the setup.py, it works now.
Added cvFind and DrawChessboardCorners - from Holger
added chessboard data images, modified install.txt, and .gitignore
added 4 warping functions. Added CvMat support.
added "cxcore" to __all__
added camera calibration from Holger Rapp and fixed a bug in CvMat struct
added morphology functions and support for IplConvKernel
added cvFilter2D. This supports convolution with an arbitrary filter.
verified only float32 is valid for cvFilter2D kernel
synched with upstream and added integral images
added color conversion constants
fixed camera calibration to 4-vec for opencv 1 support
bogus build commit
added color conversion
Merge branch 'cvtcolor'
fixed camera calib back to a 5 vec since we support opencv >= 2.0
added threshold and adpative threshold
fixed threshold to add otsu as a kwarg
added threshold and adpative threshold
fixed threshold to add otsu as a kwarg
added pyramid up and pyramid down
added pyramid up and pyramid down
standardized the handling of out arguments, replaced assertions with exceptions.
1/3 of the doc-strings complete. Doc decorator created and added to a _utilies.py module.
this is the actualy commit for _utilities.py
changed how the doc decorator works. now it only adds the url.
fixed an assertion that was preventing a slice of an array from being
Added some more docs and fixed up a few warts in the process.
more docs
Finished the docs, and caught a couple more warts.
Added the beginning of the gtk imshow plugin. And added the generic window manager.
cleaned up the gtk plugin and window manager. rock and roll!
cleaned up the window manager, and modified the qt-plugin to use it.
removed the wx_plugin until which point wx supports pyos_inputhook
removed the block= kwarg in the qt_plugin that i missed previously
beginning of qt fancy imshow
fixed event flow order for fancy imshow
added the beginnings of the color mixes, and improved fancy imshow for qt
Modified the fancy imshow widget, and added brightness control to the mixer.
fixed a bug in slider signal connection.
added slider value labels and fixed their layout a little.
fixed an alignment centering bug.
added HSV operations to the ColorMixer and fancy imshow.
Finalized HSV support in the color-mixer and fixed a few subtle bugs therein.
added histograms to fancy imshow and colormixer.
added sigmoidal gamma
progress commit
further progress on the refactoring of the fancy imshow.
added regular gamma to the mixer, refactored more of fancy imshow.
Finished the refactor of the mixer and the histogram.
fixed the gamma correction in the color mixer.
updated string formatting for slider labels.
Made it so that aspect ratio is maintained on imshow and fancy imshow for
fixed mouse tracking to not go out of bounds. Added save-to-file.
added save_to_variable functionality.
Added save to variable function using io.push() functionality.
removed a dangler.
Added tests for colormixer and histograms. Moved tests up a directory level because
first go at multithreading the mixer.
added better logic to the thread dispatcher.
added try except to deal with missing multiprocessing.
added division decorators to cython. Improved how data gets chunked up.
Fixed a small but serious bug in cvCvtColor.
finished the lut tables
added cvUndistort2 and its tests
worked on prettying up scivi.
added cvFindExtrinsicCameraParams2 and cvWatershed
added cvFloodFill and cvMatchTemplate
Merge pull request #18 from GaelVaroquaux/master
zachrahan (3):
Merge pull request #1 from stefanv/find-contours
Merge pull request #117 from zachrahan/freeimage-library_loader
Merge pull request #149 from zachrahan/tifffile-plugin
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