[skimage] annotated tag debian/0.7.2-1 created (now 2a9aba8)
Andreas Tille
tille at debian.org
Fri Dec 23 08:22:12 UTC 2016
This is an automated email from the git hooks/post-receive script.
tille pushed a change to annotated tag debian/0.7.2-1
in repository skimage.
at 2a9aba8 (tag)
tagging 2df4a65bca8677d06d2324f15def870c0fec69a8 (commit)
replaces debian/0.6-1
tagged by Yaroslav Halchenko
on Sat Dec 1 22:23:13 2012 -0500
- Log -----------------------------------------------------------------
Debian release 0.7.2-1
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Andreas Mueller (80):
COSMIT pep8
COSMIT don't let pep8 make your matrices ugly.
COSMIT fix ugly line breaks.
COSMIT minor pep8
COSMIT no spaces around power ``**``. Fun: https://gist.github.com/1671995
COSMIT minor stype improvements, whitespace in error messages
COSMIT some manual pep8, removed unused imports, removed unused variables and fixed a bug in a ValueError statement.
ENH slight cleanup, fixed *1000 bug, added test and rgb2lab convenience.
MISC minor cleanup in doctests / examples
Add segmentation setup.py for felsenzwalb algorithm
ENH first draft of felzenszwalbs graph based image segmentation in Python
ENH using union find from morphology module
MISC remove debugging tracer, unnecessary variable.
ENH naive pure python implementation of quickshift
ENH fixed stupid bug in quickshift, example
ENH start cythonizing quickshift, get rid of hstack.
misc Uncomment Felzenszwalb as it is not messing with quickshift.
ENH reasonable speed.
Color example :)
ENH CRAZY speedup
Bigger example
ENH dirty fix, works though. Starting profiling.
ENH much faster.
forgot a line :-/
enh cythonizing some arrays
ENH reasonable speed for felzenszwalbs's segmentation
ENH felzenszwalb for color images
ENH Polish examples.
DOC more docs....
misc remove profiling outputs from quickshift
DOC document and export felzenszwalb_segmentation_grey, prettify plots for the web.
ENH: make quickshift more tolerant to input type, just convert to float. Also keep track of random seed for reproducable tests.
FIX build problem and cython problem resolved.
enh: minor simplifications
ENH Rename parameters in quickshift, add "ratio"
Remove felzenszwalb_segmentation_gray again since it just complicates the interface.
ENH tests for Felzenszwalbs segmentation, fixed off-by-one error
First draft for numpy based km_segmentation
FIX Tried to address @stefanv's comments on the PR.
FIXed test to work with the fixed "hashing" of colors
DOC updates CONTRIBUTORS.txt
fix trying to make this implementation more like slic
starting cython implementation of km_segmentation
ENH speedup, means and image use pointers
MISC some simplifications, minor speedup
Documentation, example for km_segmentation
Fix initialization in km_segmentation, prettier examples
Rename km_segmentation to slic. They have a PAMI paper now so I guess we should use their name.
Put RGB2Lab into slic as it seems to be essential.
Some scaling issues to be closer to reference implementation
quickshift: convert to lab in function, some comments in code.
Fixed bug in SLIC smoothing
Added smoothing option to quickshift
merge segmentation examples
Post-processing for felzenszwalbs algorithm.
Pep8
Fixup tests, add test for slic.
MISC some typos in Example, titles set.
pep8
Minor fixes addressing @tonysyu's comments.
FIX width/height trouble, add non-regression test
ENH renamed "felzenszwalb_segmentation" to "felzenszwalb", remove debug output from slic
Trying to avoid name collisions.
DOC a bit nicer figure
make figure smaller again.
ENH minor speedups.
ENH added some cdefs
ENH more speeeeed
ENH Felzenszwalbs segmentation somewhat faster
Merge pull request #247 from ahojnnes/label-dtype-fix
cosmit: changed the names of x and y to r and c. that was no fun, i tell you.
ENH addressed (hopefully all) of Tony's and Stefan's comments.
MISC move felzenszwalb_cy.pyx to _felzenszwalb_cy.pyx, don't use xrange when not necessary
fixed data of tv_denoise result images with float datatype to be in default range [0.0:1.0]
use existing functionality for fix
convert image to float before performing tv_denoise operation now
cleanup of tests hence all results of tv denoise operations are returned as float
specified float array result in docstring
MISC remove unused imports, some pep8 corrections.
COSMIT some pep8
Brian Holt (1):
simplified hog code + extra unit test
Dharhas Pothina (5):
added xyz2lab, lab2xyz not quite working
fixed array being modified in place. lab2xyz working
tests added for xyz2lab and lab2xyz
minor cleanup of comments & move ref_white to global lab_ref_white
Merge pull request #2 from amueller/dharhas-lab-color-space
Emmanuelle Gouillart (19):
Modifications to random walker segmentation algorithm:
Better handling of labeled pixels in random walker segmentation when we
[BUG] fixing import problem
ENH: better handling of labels that need to be reordered
PEP8: indentation in random_walker_segmentation
Fixed two tests that were failing because of draw imports
acronym --> full name of algorithm in example
DOC: example in slic segmentation docstring
PEP 8: _quickshift module
Example in route_through_array
DOC: docstring of route_through_array
Merge pull request #248 from ahojnnes/clear-border
Merge pull request #281 from mkcor/harris_threshold
Merge pull request #284 from ahojnnes/regionprops-coords
Merge pull request #285 from ahojnnes/label-example
Merge pull request #282 from JDWarner/multispectral_random_walker
Merge pull request #278 from wuan/tv_denoise_fix
DOC: removed unused import in docstring
[BUG] Corrected a bug in the random walker that appeared
JDWarner (8):
Multispectral modifications applied to random walker.
Added return_full_prob kwarg to solve call if pyamg not present.
Added multispectral random walker test.
Changes based on PR review recommendations: input format, scaling, and bugfix.
sqrt(gradients) line removed
PEP8 compliance, removed `scaling`, different data parsing.
Documentation fix for `labels` input in random_walker.
Docfix for img_as_float; appended myself to CONTRIBUTORS
James Bergstra (19):
ENH: initialize AffineTransform to identity when no args are provided
FIX: added default identity matrix to SimilarityTransform to match AffineTransform
Merge pull request #1 from ahojnnes/default-params-geometric
FIX: corrected docstring for transform.warp
FIX: transform.warp supports cval outside 0-1 range
Added test case for warp() when cval out of clipping range
ENH: moved code generating coords out of warp() to _warp_coords
ENH: test_warp test case to make sure _warp_coords works for grey and rgb images
ENH: renamed and docd _build_coords -> warp_coords
ENH: test warp with data.lena instead of scipy.misc.lena
ENH: remove call in tests to deprecated homography fn
ENH: better docstring and test for warp_coords
FIX: doctest of warp_coords
ENH: warp_coords docstring
ENH: stricter check on test_const_cval_out_of_range
FIX: wordwrap to 78
FIX: docstring mentions inverse instead of inverse_map
FIX: configure just skimage logger on import
ENH: default logger blocks messages from global handler
Johannes Schönberger (21):
add perimeter measurement
improve and restructure geomtric transformations
remove old import
add example to make_tform doc string
update contributors
fixe index errors and improve setup of some matrices
apply PEP8 guideline
remove inconsistent numeric correction and fix test case
change API design and rename some functions
change arguments of function estimate_transformation
fix wrong exception type
fix doc string formatting of function estimate_transformation
redesign class interface
fix inconsistent doc strings
fix transformation union and add test case
change interface of transformation merging
add support for using transformation objects in warp function
extend doc string example for geometric transformations
add missing doc string for polynomial forward transformation
geometric_transform can transform single coordinate tuple
add short tutorial for geometric transformations
Johannes Schönberger (243):
Merge pull request #1 from stefanv/projection
remove some blank lines
fix bug in estimation of similarity transformation
reimplement implicit parameter functionality of transformations
combination of two transformations of the same type result in this type again
fix scale initialization in implicit composition of similarity
add doc for and restructure polynomial coefficients
fix orientation of regionprops with correct quadrant determination
add test case for correct quadrant determination
fix and improve estimation of geometric transformation parameters
fix incorrect comment
fix and improve comments, doc strings, variable names for consistency reasons
fix geometric transformation example after refactoring the module
remove confusing comment
handle composition of transformations with implicit parameters with __init__
add mathematical description of estimation in doc strings
fix typo
change inverse_map parameter handling of warp function
adapt geometric example script to new API and improve some expressions
add test for shape of transformation matrix
fix, improve and extend test cases related to geometric transformations
add information about unit of angles to doc strings
cast input of image label function
fix num_peaks parameter bug in peak_local_max
raise exception if matrix and implicit parameter arguments provided
extend test cases for num_peaks parameter of peak_local_max
complete default matrix initialization of geometric transforms
add test case for polynomial transform initialization
fix comment
add local binary pattern texture analysis
apply PEP8 guidelines
merge contributors changes
fix typos in doc string and comment
add example script for local binary pattern
move local binary pattern example script
make local binary pattern example script use skimage sample images
add plots to local binary pattern example
rewrite local binary pattern in Cython for performance reasons
fix bilinear interpolation when position outside of image
fix test cases for local binary pattern
improve doc string of local_binary_pattern function
use new subplots function in example script of LBP
Share bilinear interpolation function for other code
Use shared bilinear interpolation function and improve performance.
Wrap column
Add doc string to bilinear_interpolation
Rename matrix transform function and remove from pxd
Add full-stop at end of short doc string description
Remove unused imports and wrap text
Fix typo in doc string
Use numpy dtype objects instead of strings
Make different methods of LBP more readable in Cython code
Add doc string to Cython version of LBP
Improve printed output of example
Add plot labels
Fix import bug due to rebase
Add new package for shared code
Move bilinear interpolation code to shared package
Add integrate function to shared package
Remove unused imports
Add nearest neighbour interpolation
Use predefined header files from Cython
Refactor pnpoly function in Cython and add to shared package
Fix indentation
Add doc string to point in polygon functions
Add empty line between functions
Simplify code by removing duplicate loops
Remove empty line
Fix test cases of warps
Merge pull request #253 from jaberg/warp_cval_outside_unit_interval
add polygon approximation algorithm
add example script for polygon approximation
remove unused import and code from polygon approximation example
remove colons in comments
make loop condition more readable
improved polygon approximation example script
add subdivision of polygonal curves using B-Splines
add note about size if resulting polygonal curves
update polygon example with subdivision
add test case for subdivision of polygons
add some more comments to subdivision of polygons code
make subdivision mask code more readable und debuggable
fix wrong parameter name in doc string
add test case for non-circular subdivision of polygons
Add possibility to preserve ends and update tests
Update subdivision example with preserve_ends parameter
Add support for boolean dtype conversion
Update test cases for boolean dtype conversion
Add bool dtype range
Fix typo in Cython compiler directives
Optimize fast homography
Merge pull request #262 from stefanv/doc_intersphinx
Fix C-contiguous array bug in match template
Fix doc string of texture detection
Delete unnecessary file
Fix shape format of arrays in doc strings
Fix short description in doc string
Fix parameter format in doc string of peak_local_max
Capitalize parameter descriptions in draw package
Fix examples of exposure package
Capitalize parameter descriptions in geometric transforms
Fix description of polygon example script
Add deprecation warning in doc string to homography
Refactor image warps
Fix import error in geometric test cases
Update radon transform with new warp function
Fix doc string example of warp_coords
Add function for image rotation
Fix import of rotate function
Fix rotate translation bug
Fix translation bug in image rotate
Rename parameter of image rotation
Apply numpy doc style for deprecation warning
Move image transform functions to _geometric file
Add missing return type to matrix transform function
Add function to clear border in binary images
Refactor clear_border for better performance
Move clear_border to segmentation package
Use function pointer for different interpolation methods
Simplify mode determination
Add (bi-)cubic interpolation
Add examples to doc string of clear_border
Use explicit keyword for dtype
Apply clipping also to fast cython implementation
Fix example of estimate_transform
Update doc string of _warp_fast for bicubic interpolation
Add nearest mode for positions outside image
Remove duplicate subtraction
Add biquadratic interpolation
Add image resize function
Add new Coordinates property to regionprops
Add example script for image labelling
Improve visualization of labelling
Update description with more detailed explanation of applied steps
Explicitly define colormap
Add parallel execution support
Revert to non parallelized execution
Fix decision whether to use warping or fast warping
Refactor erosion and dilation for better performance
Remove unused imports and add missing types
Convert selem to uint8
Improve doc string layout
Add fast morphological operations for binary images
Use numpy testing functions
Fix support for predefined output array
Fix for predefined output array
Hide coefficient variable of geometric transforms
Merge pull request #286 from TimSC/master
Apply PEP8 and improve docs
Speed up transformation of piecewise-affine
Add missing doc string for inverse transform
Implement inverse transformation for piecewise-affine
Remove unnecessary params section in doc string
Fix fast warping of images
Add note about coordinates outside of mesh
Fix inverse piecewise affine
Add test cases for piecewise affine
Fix typo in polygon example script doc
Add example script for piecewise affine transform
Add mesh points to plot
Merge pull request #298 from tonysyu/edge-masking-tweak
Add Coordinates property to property list
Merge pull request #299 from ahojnnes/regionprops-coords
Add function to build gaussian and laplacian pyramids
Add missing references
Rename file of pyramid functions
Add tests for pyramid functions
Fix wrong factor in pyramid_expand
Fix singleton dimension for 1 pixel image
Make pyramid functions generators
Use consistent dtype for all levels of pyramid
Rename factor parameters for better comprehensibility
Add example script for image pyramids
Add missing 0th layer of laplacian pyramid
Update doc string return type of image pyramids
Remove unnecessary C-contiguous flag
Add test case for memory order
Add dependencies to setup process
Improve code layout
Implement own dependency checking before installation
Update pyramid example with longer description
Use more readable variable name for image
Add doc string to helper function _smooth
Remove default parameter values from doc string
Update short description of pyramid functions
Add information about return dtype
Use gaussian pyramid function for collection viewer example
Update description of collection viewer example
Fix bug in laplacian pyramid caused by renamed variables
Update legacy comment
Add another reference to laplacian pyramid
Move comment to correct code
Remove unused import
Merge pull request #307 from kuantkid/inlinedisplay
Make font-size of documentation smaller
Merge pull request #306 from tonysyu/doc-negative-dtypes
Remove scipy build dependency
Merge pull request #312 from ahojnnes/dependency-fix
Fix bug in grey erosion and dilation
Let travis build bot run tests
Fix bug in binary dilation and test case
Add test case for non-square images
Merge pull request #314 from tonysyu/doctest-fixes
Merge pull request #316 from tonysyu/doc-img_as_bool
Rename pyramid functions
Fix typo
Add more detailed description for pyramid functions
Update name of pyramid function in pyramid example description
Merge pull request #317 from tonysyu/testing-compatibility
BUG: Remove unused fopenmp compile args.
Add new doc theme
Remove uncompressed bootstrap files
Fix download link in navigation bar
Rename scikits-image to scikit-image
Rename scikits-learn to scikit-learn
Fix navigation docs link
Extend CSS rule for all headings
Fix navigation home page link
Remove unused fopenmp compile args
Add favicon for docs
Change domain name
Revert changes to release notes
Fix doc version 0.7 link
Fix bug in warp which caused 1 pixel images not to be clipped
Full test coverage for image pyramids
Full test coveragem for data package
Full test coverage for canny filter
Improve test coverage for ctmf
Fix callable test in LPI filter
Improve test coverage of LPI filter
Fix polygon approximation for 0 or less tolerance
Full test coverage for polygon approximation and subdivision
Full test coverage for regionprops
Full test coverage for structural similarity
Improve test coverage of find_contours
Remove obsolete license note as code has been refactored
Remove redundant dtype conversion
Change Exception type for wrong input dims
Add note about random test failure for some systems
Split tests for different channel numbers into separate functions
Add missing empty lines between test functions
Fix failing perimeter test caused by bug in scipy
Fix reference links in doc strings
Jonathan Helmus (1):
ImageCollection now slices like other iterables
Jonathan J. Helmus (3):
ImageCollection now supports slicing
added test for ImageCollection slicing
variable name changes and small fixes
Juan Nunez-Iglesias (6):
Add function 'concatenate' to ImageCollection
Add test for ImageCollection.concatenate
Add concatenate() support for MultiImage
Sort files from a global pattern alphanumerically
Add test coverage for alphabetic sort
Simplify alphanumeric_key logic
Leon Tietz (2):
Updated Image Segmentation tutorial
corrected plot title
Marianne Corvellec (2):
Fixed deprecated threshold.
Fixed layout (bracket alignment).
Matt McCormick (6):
BUG: Fix testing failures when FreeImage not installed.
BUG: Fix tests when FreeImage is not installed.
STY: Align multi-line string statements.
BUG: Ignore colorconv RuntimeWarning:invalid value encountered in true_divide.
BUG: Fix OTSU thresholding tests with matplotlib IO plugin.
TST: Add buffer for threshold tests.
Neil Yager (1):
Fix bug in skeletonize LUT
Nicolas Pinto (1):
BUG: fix side-effect in util.montage()
Paul Ivanov (1):
complete singularization of scikit-image
Pavel Campr (1):
fix hog.py - orientation and visualization
Stefan van der Walt (95):
PKG: Start 0.7 development cycle.
PKG: Use different delimiter in contributors list.
DOC: Update release instructions.
Merge pull request #205 from amueller/pep8
BUG: Allow rgb2grey to be called on grey-level images.
TST: Check number of input angles in radon tf.
Merge pull request #214 from cgohlke/patch-1
Merge pull request #216 from ahojnnes/perimeter
PKG: Update Debian packaging instructions.
DOC: Add SciPy as a runtime dependency.
DOC: Update tasks.
Merge pull request #220 from thewtex/freeimage_error
Merge pull request #222 from thewtex/freeimage_error_2
Refactor geometric transforms.
Merge pull request #225 from lct123/ImageSegTut
Merge pull request #223 from jni/jni-concatenate-image-collection
Merge pull request #228 from thewtex/color_numpy_warnings
Merge pull request #219 from wilsaj/remove-nose-message
Merge pull request #197 from ahojnnes/projection
DOC: Fix typos in see-also references.
Merge pull request #249 from ahojnnes/peak-local-max
Merge pull request #252 from gatagat/patch-regionprops
Merge pull request #240 from tonysyu/rename-duplicates
BUG: Fix broken import in ctmf.
DOC: Update development guidelines.
DOC: More coding conventions.
Merge pull request #244 from pcampr/master
Merge pull request #239 from ahojnnes/texture
Merge pull request #206 from amueller/felsenzwalb
Merge pull request #256 from NeilYager/skeleton_fix
BUG: Remove uses of xrange for py3 compatibility.
DOC: Update development guidelines from PR 255 feedback.
Merge pull request #250 from ahojnnes/approx-polygon
Merge pull request #258 from tonysyu/imshow-filename
BUG: Remove print statement that caused py3 tests to fail.
DOC: Add intersphinx so we can refer to numpy, scipy, sklearn docs.
Merge pull request #229 from tonysyu/qtmpl-viewer
BUG: Workaround to unit tests failing if PyQt4 not available.
Merge pull request #261 from emmanuelle/fix_import_glcm
PKG: Update release notes, plot_pr.
Merge pull request #260 from ahojnnes/convert-bool
Merge pull request #266 from tonysyu/viewer-fix-hard-exit
Merge pull request #267 from tonysyu/viewer-adapt-dtype
Merge pull request #215 from tonysyu/morph-reconstruction
Merge pull request #257 from ahojnnes/shared
Merge pull request #269 from tonysyu/viewer-fix-doc-and-test
Merge pull request #270 from tonysyu/cython-0.15-compat
Merge pull request #274 from ahojnnes/doc-update
Merge pull request #273 from ahojnnes/draw-file-deletion
Merge pull request #276 from tonysyu/reconstruction-fix
Merge pull request #272 from ahojnnes/template-contiguous
Merge pull request #259 from emmanuelle/fix_random_walker
Merge pull request #277 from emmanuelle/fix_tests_draw
Merge pull request #275 from ahojnnes/warps
Merge pull request #288 from tonysyu/bento-update
Merge pull request #287 from ahojnnes/morph
Merge pull request #290 from tonysyu/qtmpl-lineprofile
Merge pull request #289 from tonysyu/qtmpl-collection-viewer
Merge pull request #291 from tonysyu/sphinx-import-warnings
Merge pull request #295 from tonysyu/doc-cleanups
BUG: Add missing imports in transform module.
Merge pull request #297 from ahojnnes/piecewise-affine
Merge pull request #300 from tonysyu/viewer-qapp-fix
TST: Add Travis configuration based on nipy's.
Merge pull request #303 from jaberg/local_logger
Merge pull request #308 from ahojnnes/doc-font-size
Merge pull request #305 from ahojnnes/setup-import-warning
Merge pull request #313 from ahojnnes/travis-tests
Merge pull request #301 from tonysyu/viewer-user-guide
Merge pull request #310 from ahojnnes/morph
TST: Invoke Travis nosetests differently.
Merge pull request #315 from tonysyu/doctest-plot-fix
ENH: Bool dtype conversion speed improvements.
Conversion to bool: threshold on half dtype max.
Merge pull request #322 from JDWarner/random_walker_docfix
Merge pull request #323 from emmanuelle/bug_rw
BUG: Fix homography.
PKG: Remember to check that random.js file is correctly generated.
Merge pull request #326 from amueller/cleanup_imports
Merge pull request #332 from cgohlke/patch-8
Merge pull request #327 from cgohlke/patch-1
Merge pull request #328 from cgohlke/patch-3
Merge pull request #329 from cgohlke/patch-4
Merge pull request #330 from cgohlke/patch-5
Merge pull request #331 from cgohlke/patch-7
PKG: Set version to 0.7.1.
DOC: Fix typo in release instructions.
DOC: Credit Johannes for website layout.
DOC: Rename skimage.org to scikit-image.org.
DOC: Clean up one last skimage -> scikit-image.
PKG: Print something when bento check passes.
DOC: Fix pip command.
PKG: Set version to 0.7.2.
PKG: Temporarily disable failing gradient check.
Merge branch 'v0.7.2-prep' into v0.7.x
Tim Sheerman-Chase (7):
Initial work to introduce piecewise affine transform
Achieved functional piecewise affine transform
Update doc strings with piecewise affine
Improve comments
Improve comments
Setting _matrix to None, because the transform is not of this form
Wrap long line
Tomas Kazmar (2):
BUG: Fix Orientation for diagonal regions in regionprops.
Wrap long lines.
Tony S Yu (181):
Add morphological reconstruction with test and example.
DOC: Add list of tasks for SciPy 2012 sprints
ENH: Add orientation kwarg to IntelligentSlider
ENH: Add image viewer based on Qt and Matplotlib
API change: switch order of image viewer and callback arguments.
Add PlotPlugin and cleanup code.
Add LineProfile plugin.
Fix: Move on_draw method to base Plugin
Merge pull request #227 from thewtex/thresholding_failures_2
Clean up old code and add docstrings.
Delete overlay when deleting plugin.
Add docstring for `overlay` and reorder methods.
Show coordinate and intensity info in status bar.
Add plugin names
Add `update_on` parameter to slider and allow update on release.
Refactor image overlays to special plugin base class.
Move OverlayPlugin and PlotPlugin to their own modules.
Change ImageViewer to automatically call plugins.
ENH: Align image and plugin windows
Fix `add_argument`.
ENH: Simplify creation of Slider widget.
ENH: Rename callback functions for clarity.
ENH: Simplify widget addition.
ENH: Move closeEvent definition to base class.
ENH: Generalize add_widget function.
ENH: Allow `Plugin.add_widget` to hook into Plugin attributes.
Make alpha value to ClearColormap adjustable.
API Change: Attach ImageViewer to Plugin after init.
Minor cleanup.
Merge pull request #226 from jni/jni-alphanumeric-sort
Change image_viewer to Plugin property.
ENH: Let Qt handle most of the window sizing.
Rename (dis)connect_event to (dis)connect_image_events.
DOC: Add todo note
ENH: Display overlay by default
ENH: filter image when Plugin is attached to ImageViewer
BUG: in-place add should return object
ENH: Add example of adding widgets to plugin
ENH: Change inplace-add to normal add to support alternate syntax
BUG: Don't override `image_filter` method if defined by subclass
Merge pull request #234 from bdholt1/fix-hog
STY: Remove unused `add_artist` method.
DOC: Improve docstrings for ImageViewer.
DOC: Improve docstrings for Plugin class.
ENH: allow color to be set by name
STY: reorder methods for clarity.
DOC: clean up docstring for PlotPlugin
DOC: cleanup docstring and reuse parameter defined by parent class
DOC: Add class docstring
STY: Refactor MatplotlibCanvas from ImageCanvas and PlotCanvas.
ENH: Create new Slider with editbox.
Revert modifications of IntelligentSlider.
Remove lineprofile temporarily (saved in a branch)
Remove unused import
STY: Refactor BaseWidget from Slider and ComboBox
BUG: Fix behavior when initial overlay limits are bad.
DOC: Explain use of callback parameter.
DOC: Add explanation of add operator.
BUG: Fix scaling when setting default slider value.
ENH: Add Slider `value_type` to allow int values.
Merge pull request #230 from dharhas/dharhas-lab-color-space
BUG: Rename modules with duplicate function names.
BUG: more module renaming to prevent duplicates.
ENH: Add RequiredAttr to raise warnings when attr not set.
DOC: Clean up docstring for Slider
ENH: Add SaveButtons widget.
BUG: reset image when plugin is closed.
ENH: Add OK/Cancel buttons
STY: Tweak button sizes.
Merge pull request #238 from ahojnnes/regionprops-orientation
Merge pull request #221 from jjhelmus/imagecollection_slicing
DOC: Add note about ImageCollection slicing.
BUG: fix import of Cython extension.
STY: PEP8 and other clean up.
Update function names that were changed since original PR.
STY: minor PEP8 change
BUG: Rename files with similar function, python module, and cython extension names.
STY: Use standard skimage data type conversion.
DOC: add comments to clarify algorithm
STY: Rename returned image to distinguish input from output.
ENH: Add reconstruction by erosion.
DOC: Clarify code comments and docstring
STY: Rename variables for clarity.
DOC: Reorder docstring sections.
ENH: Add examples of morphological reconstruction.
DOC: Remove peak detection tutorial.
ENH: Add test of reconstruction by erosion.
ENH: Use Cython data types instead of Numpy dtypes.
DOC: Fix docstring to match rank order.
DOC: Combine examples for finding spots and filling holes.
ENH: Add regional maxima example
Merge pull request #254 from jaberg/default_AffineTransform
ENH: Allow imshow to show images when given file name.
BUG: Update filter when edit-box is changed.
Merge pull request #255 from stefanv/coding_conventions
Merge pull request #233 from wilsaj:image-html-repr
Remove custom dtype range
BUG: Closing ImageViewer shouldn't quit parent program
BUG: Adjust pixel limits based on image data type
DOC: Improve description of reconstruction
DOC: Bump up Cython version up to 0.16
BUG: Fix nosetest and autodoc errors when PyQt4 not available
Change error to warning so that autodoc doesn't fail.
Change reconstruction to support Cython 0.15.
BUG: fix import of rank_order
BUG: Fix division error for Python 3
ENH: Change assert statement for better error output
BUG: Bento version must end with number
ENH: Add script to check that bento.info is up-to-date.
BUG: Update bento.info to match setup.py files
ENH: Add CollectionViewer
Add line profile plugin back in.
DOC: Fix broken doc build due to broken import
DOC: Turn off numpydoc flag to silence warnings
Change import to silence import errors in docs.
DOC: Separate config sections in conf.py
Merge pull request #292 from ahojnnes/geometric-coeffs
DOC: Remove inheritance-diagram Sphinx role.
DOC: Remove inherited-members Sphinx role.
DOC: Remove commented out code.
DOC: Fix Sphinx warnings for regionprops
DOC: Change title to match numpy docstring standard
DOC: Fix Sphinx warning.
DOC: Fix formatting to prevent Sphinx warnings
DOC: Reformat shape argument
DOC: Fix citation syntax
DOC: Shorten plugin description so it fits in table
DOC: Fix section titles to match numpy doc standard
DOC: Fix rendering bug.
DOC: Wrap long lines
DOC: Integrate uncompleted Scipy2012 Sprint tasks
STY: Clean up whitespace
Merge pull request #279 from emmanuelle/fix_doc
STY: Clean up imports
STY: Rename tests.
TST: Add tests for masked region
DOC: Add note about expanded masking
Refactor masking
STY: Rework masking based on suggestions by @ahojnnes
STY: Refactor initialization of QApplication.
BUG: Initialize QApplication when creating Plugin.
DOC: Add quickstart for viewer to User Guide
ENH: Set viewer min-intensity to zero when possible.
STY: Clean up formatting and remove repeated imports
Merge pull request #304 from ahojnnes/contours-array-fix
Merge pull request #302 from ahojnnes/pyramids
DOC: Add note about negative dtypes
DOC: float dtype changed from (0, 1) to (-1, 1).
DOC: suppress plot display in doctests
DOC: Fix block-formatting in doctest
DOC: Fix doctests in io collection module
DOC: Fix array formatting in doctest
DOC: Fix doctests in viewer subpackage
DOC: Add missing import in doctest
DOC: Fix doctests in lpi_filter
DOC: rewrap docstring lines and remove unused import
DOC: fix numpy dtype print out.
DOC: Replace doctest with literal code block
DOC: Remove plots from docstring examples
Merge pull request #311 from stefanv/dtype_bool_fast
DOC: Fix docstring note about conversion range
Add `assert_greater` compatibility function.
Merge pull request #320 from ahojnnes/pyramids-fix
DOC: Fix attribution for testing function
Merge pull request #325 from JDWarner/img_as_float_docfix
DOC: Add 0.7 release notes
PKG: Update version to 0.7.0
PKG: Update docversions.js to 0.7
PKG: Use correct version in docversions.js
PKG: Add attributions to contributors.txt
DOC: Change algorithm for depth of API generation
PKG: Start 0.8 development cycle.
PKG: Clarify instructions for gh-pages.
PKG: Update release notes.
PKG: Add attributions to contributors.txt
DOC: Change algorithm for depth of API generation
DOC: Format gallery into a grid
DOC: Save thumbnails with a fixed image shape
DOC: Remove task list from docs
BUG: Pass package directory as positional argument to nose.run
DOC: Add imports to doctests to fix errors
Yaroslav Halchenko (3):
Merge tag 'v0.7.2' into debian
New changelog + refreshed control (version dependency on scipy + multilined depends)
fixed up watch for rename of the project
cgohlke (16):
Fix io.imsave() problems with passing arguments to plugin "freeimage"
Open image files in default binary write mode
Fix ValueError: Buffer dtype mismatch on 64 bit platforms
Fix: round function is not provided by libc.math on all platforms
Fix: round function is not provided by libc.math on all platforms
Fix: 'inline' not permitted on data declarations
Fix: 'inline' not permitted on data declarations
Document correct parameter types
Use io.BytesIO instead of StringIO
Open image files in default binary write mode
Fix ValueError: Buffer dtype mismatch on 64 bit platforms
Fix: round function is not provided by libc.math on all platforms
Fix: round function is not provided by libc.math on all platforms
Fix: 'inline' not permitted on data declarations
Fix: 'inline' not permitted on data declarations
Document correct parameter types
kuantkid (4):
FIX convert to (unsigned) integer from bool type
FIX: early fix for dtype conversion from bool to other type PR #306, Issue #263
FIX: multiply by the maximum value may change dtype
FIX: issue sign loss warning only for signed type
pcampr (3):
fixing multiple bugs in hog.py, adding two tests to test_hog.py
fixed imports
several fixes and 3 new tests for Histograms of Oriented Gradients
wilsaj (17):
remove message about not being able to load nose; fixes #218
raise an import error if trying to run test suite without nose
add stefan's image class
add html repr method for Image class
add support for serializing to file-like objects (e.g. StringIO) to PIL plugin
fix test so it looks for new Image class
use repr_png and repr_jpeg hooks rather than repr_html
allow qt_plugin imsave() function to write to file-like objects
close temp StringIO buffers when we're done with them
open buffer on on byte_array
remove superfluous conditional logic
remove unused import
use standard conventions for Image.__new__() cls attribute and docstring
role duplicate logic for Image._repr_png_() and Image._repr_jpeg_() into a common method
add note about to display protocol to Image docstring
add unit test for Image._repr_png_() with PIL plugin
Remove tag metadata-related fucntions from Image class
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