[mlpack] 28/30: Merge tag 'upstream/2.1.1'

[Barak A. Pearlmutter]

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commit 5f5c053056b645600a2d54090c262f0ae7e68830
Merge: f4c07b2 4e20f35
Author: Barak A. Pearlmutter <barak+git at pearlmutter.net>
Date:   Mon Dec 26 10:40:12 2016 +0100

    Merge tag 'upstream/2.1.1'

 .appveyor.yml                                      |   2 +-
 .travis.yml                                        |   2 +-
 CMake/mlpack.pc.in                                 |   5 -
 COPYRIGHT.txt                                      |   2 +
 Doxyfile                                           |   2 +-
 HISTORY.md                                         |  12 ++
 README.md                                          |   2 +-
 doc/guide/build.hpp                                |   2 +-
 doc/guide/sample.hpp                               |   6 +-
 doc/tutorials/det/det.txt                          |  10 +-
 src/mlpack/core.hpp                                |   2 +
 src/mlpack/core/arma_extend/Mat_extra_bones.hpp    |   9 +
 src/mlpack/core/arma_extend/SpMat_extra_bones.hpp  |   8 +
 src/mlpack/core/util/prefixedoutstream_impl.hpp    |   6 +-
 src/mlpack/core/util/version.hpp                   |   4 +-
 .../methods/approx_kfn/drusilla_select_impl.hpp    |   1 -
 .../methods/decision_stump/decision_stump.hpp      |   4 +-
 .../methods/decision_stump/decision_stump_impl.hpp |   9 +-
 src/mlpack/methods/emst/dtb.hpp                    |   4 +-
 src/mlpack/methods/hmm/hmm_impl.hpp                |  11 +-
 src/mlpack/methods/hmm/hmm_train_main.cpp          | 131 +++++++++-----
 src/mlpack/methods/lsh/lsh_search.hpp              |   4 -
 src/mlpack/tests/CMakeLists.txt                    |   2 +
 src/mlpack/tests/cli_test.cpp                      | 198 ---------------------
 src/mlpack/tests/decision_stump_test.cpp           |  34 ++++
 src/mlpack/tests/hmm_test.cpp                      |   5 +-
 src/mlpack/tests/kernel_test.cpp                   |  58 +++---
 src/mlpack/tests/lsh_test.cpp                      |   2 +-
 src/mlpack/tests/mean_shift_test.cpp               |   2 -
 src/mlpack/tests/prefixedoutstream_test.cpp        | 164 +++++++++++++++++
 src/mlpack/tests/timer_test.cpp                    |  93 ++++++++++
 src/mlpack/tests/ub_tree_test.cpp                  |   8 +-
 32 files changed, 487 insertions(+), 317 deletions(-)

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