[scikit-learn] annotated tag debian/0.18-1 created (now 4b5232b)
Andreas Tille
tille at debian.org
Wed Dec 28 13:11:08 UTC 2016
This is an automated email from the git hooks/post-receive script.
tille pushed a change to annotated tag debian/0.18-1
in repository scikit-learn.
at 4b5232b (tag)
tagging 595703ce7e6e70dfc86bd31a81da7b2180cdadf9 (commit)
replaces debian/0.17.1-2
tagged by Yaroslav Halchenko
on Thu Sep 29 22:21:57 2016 -0400
- Log -----------------------------------------------------------------
scikit-learn Debian release 0.18-1
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Aditya Joshi (1):
Update cross_validation.py
Agamemnon Krasoulis (1):
lda_qda doc: QDA vs Naive Bayes correction (#5997)
Alejandro Correa Bahnsen (1):
[MRG +1] DOC - add example to cross_val_predict and cross_val_score (#6446)
Alexander Fabisch (4):
Make clear that GMM is a clustering algorithm
Remove "clustering" from headings
Rename example to plot_gmm_covariances.py
Fix memory leak in Barnes-Hut SNE
Alexander Loginov (1):
I guess it is some small mistake
Alexander Minyushkin (1):
[MRG] Misprint in documentaion fixed
Alexander Rudy (1):
Fix a typing issue in expected mutual information (#7240)
Alexandre Abadie (8):
referencing datasets documentation in toc
Update deprecation message in metrics/regression.py (use uniform_average as default multioutput parameter of r2_score function after 0.19)
Updating deprecation message in metrics.py:
removing sklearn/metrics/metrics.py
[MRG+2] DOC: update persistence documentation with Joblib new behavior (#7434)
DOC fix deprecation warning in faces decomposition example
fixing failing faces decomposition example
replace RandomizedPCA by new API in remaining documentation
Alexandre Abraham (3):
Naive optimization
Pre-allocate array in _graph_is_connected
Add test for _graph_connected_component function
Alexandre Gramfort (102):
Merge pull request #5437 from rvraghav93/remove_deprecated_stuff
Merge pull request #5468 from jmschrei/pomegranate
Merge pull request #5475 from glouppe/gp-deprecation
Merge pull request #5479 from pletelli/fix_circleci_build
Merge pull request #5478 from rvraghav93/description_undefinedmetricwarning
Merge pull request #5486 from jakevdp/xrange-fix
Merge pull request #5457 from aabadie/remove_deprecation_metrics_second_pass
Merge pull request #5465 from massil94/dev-massil
Merge pull request #5519 from ishank08/imp_transform
Merge pull request #5487 from arjoly/example-node
Merge pull request #5544 from Mbompr/check-PR-5417
Merge pull request #5274 from MechCoder/liblinear_samples_weights
MISC : Y->y
nitpicks
Merge pull request #5560 from arjoly/serialization-bug-tree
Merge pull request #5594 from betatim/isolationtree-docs
Merge pull request #5597 from vortex-ape/matplotlib_issue
Merge pull request #5613 from jakevdp/tsne-cleanup
Merge pull request #5617 from ngoix/doc-iforest
Merge pull request #5648 from sieben/default_argument_mutable
Merge pull request #5647 from sieben/patch-1
Merge pull request #5655 from sieben/deprecated
Merge pull request #5657 from sieben/remove_cython_warnings
Merge pull request #5666 from amueller/sag_sparse_warnings
Merge pull request #5753 from staranjeet/grammatical-fix
Merge pull request #5526 from giorgiop/fix-weight-linearregression
Merge pull request #5796 from max-moroz/dummy_classifier_memory_efficiency
Merge pull request #5798 from vruusmann/patch-1
Merge pull request #5752 from hrjn/fix-5694-proper
Merge pull request #5809 from lmcinnes/doc_related_hdbscan
Merge pull request #5754 from rvraghav93/deprecated_mpl_15
Merge pull request #5831 from codevig/mybranch
Merge pull request #5895 from toastedcornflakes/master
Merge pull request #5913 from mekman/doc_fix_minor2
Merge pull request #5954 from KjellSwedin/correct_LinearRegression_example
Merge pull request #5962 from alexfields/master
Merge pull request #5966 from hlin117/pairwise-docs
Merge pull request #5949 from olologin/plot_svm_anova.py-and-"all-CPU's"
Merge pull request #5980 from dshieble/Odd_docstring_for_CountVectorizer_analyzer
Merge pull request #5634 from sieben/space_indentation
Merge pull request #5990 from jblackburne/fix-test_no_sparse_y_support
Merge pull request #5994 from fabioticconi/add_link
Merge pull request #5942 from hlin117/lda_svd
Merge pull request #5773 from amueller/python3.3_fix_again
Merge pull request #5721 from amueller/examples_deprecation_fixes
Merge pull request #6006 from hlin117/logistic_docs
Merge pull request #5946 from nmayorov/fetch_kddcup99_bug
Merge pull request #6042 from kputnam/patch-2
Merge pull request #6046 from davidthaler/plot_krr_fixup
Merge pull request #6044 from yarikoptic/master
Merge pull request #6060 from nelson-liu/add-deep-learning-to-faq
Merge pull request #6067 from IsaacHaze/lsh_link_fix
Merge pull request #6069 from MechCoder/mbkmeans_fix
Merge pull request #6068 from nelson-liu/rework_nearest_centroid_classification
Merge pull request #6097 from mrandrewandrade/master
Merge pull request #6104 from maniteja123/issue5715
Merge pull request #6107 from MechCoder/2016
Merge pull request #6148 from MechCoder/ridge_cleare
polish figure
Merge pull request #6187 from mth4saurabh/update-paper-url
Merge pull request #6208 from TomDLT/authors-update
Merge pull request #6213 from dsquareindia/add_profile_link
Merge pull request #6244 from harrymvr/patch-1
Merge pull request #6272 from jakevdp/fix6269
Merge pull request #6296 from pestrickland/master
Merge pull request #6311 from jakirkham/badge_svg_travis
Merge pull request #6339 from yenchenlin1994/fix-typo-in-test_ranking
Merge pull request #6336 from GaelVaroquaux/fix_roc_auc_doc_phrasing
Merge pull request #6360 from alyssaq/patch
Merge pull request #6366 from yarikoptic/master
Merge pull request #6412 from Naereen/patch-3
Merge pull request #6427 from nelson-liu/fix_svm_doc_citation
Merge pull request #6442 from radarhere/patch-1
Merge pull request #6458 from yenchenlin1994/add-doc-for-voting-classifier
Merge pull request #6469 from ralexx/docstring-typos
Merge pull request #6481 from maniteja123/logistic-doc
Merge pull request #6490 from nelson-liu/fix_isolation_forest_docstring
Merge pull request #6530 from Arafatk/master
Merge pull request #6531 from gasagna/patch-1
Merge pull request #6546 from Naereen/patch-1
Merge pull request #6549 from FlorianWilhelm/ardregression_doc_addition
Merge pull request #6565 from bryandeng/doc-link
Merge pull request #6575 from hlin117/logregdocs
Merge pull request #6608 from tacaswell/doc_knc_docstring
Merge pull request #6606 from tkamishima/tkamishima_one_hot_encoder_parameter_checking
misc
fix test warning
pep8
fuse anomaly examples
cleanup bench script
misc
better figsize in iforest bench
fix pep8
Update ISSUE_TEMPLATE.md
pep8
pep8
DOC rm obsolete DATASET_PROPOSAL.txt (#7133)
cosmit
cosmit
rephrasing
update what's new + simplify test
phrasing
Alexandre Saint (2):
Fix deprecation warning for 1d matrix input (#7263)
Fix ConvergenceWarning's in tests
Alvaro Ulloa (1):
predictions are float but np.bincount can only be used on integers, thus an error comes out when using it
Amlan Kar (1):
Typo
Andreas Mueller (148):
Merge pull request #5416 from giorgiop/fix-scaler-refit
DOC cosmit I find it confusing to say that fit resets the estimator, at it always does that.
FIX skip LDA deprecation test on python3.3 that has no reload.
DOC update doc/readme
Merge pull request #5451 from zermelozf/deprecated-stuff
Merge pull request #5446 from deepcharles/charles1
Merge pull request #5456 from aabadie/remove_deprecation_metrics
Merge pull request #5512 from giorgiop/randomized-svd-versionadded
refactor mlp optimization methods into _fit_lbfgs and _fit_sgd, add Ctrl+C stop option for SGD
minor fixes to bench_mnist.
FIX partial fit test for MLP
iterate, improve. Nesterov's momentum.
Merge pull request #5008 from TomDLT/logistic_multiclass
undo change by @arthurmensch that was probably accidental ;)
Merge pull request #5517 from lesteve/replace-base-class-method-calls-by-super
Merge pull request #5506 from RachitKansal/my-work
Merge pull request #5214 from glennq/mlp_refactoring
doc fix lates in softmax formula
Merge pull request #5633 from sieben/list_litteral
Merge pull request #5632 from sieben/chain_comparaisons
Merge pull request #5629 from sieben/dict_litteral
Merge pull request #5566 from rvraghav93/mod_sel_doc
Merge pull request #5650 from shawpan/fix-user-guide-link-ransac#5621
Merge pull request #5626 from ogrisel/fix-osx-logistic-class-weights
DOC polish documentation of output types of train_test_split, add change to 0.16 whatsnew.
Merge pull request #5659 from ElDeveloper/doc-fix
Merge pull request #5644 from trevorstephens/export_gviz_32bit_fix
TST make tsne tests 32bit save
COSMIT don't use the deprecated residuals property of ols
TST catch warnings in tests that the solver is changed to SAG in the sparse case.
TST close /dev/null in the theil sen tests.
FIX port LDA covariance fix to decomposition module
FIX we shouldn't warn the user if the solver is auto
Merge pull request #5661 from amueller/tsne_test_32bit
Don't use floats to index numpy arrays
Merge pull request #5673 from amueller/sag_dont_warn_on_auto
skip unstable tests on 32bit platform
Merge pull request #5637 from MechCoder/one_hot_enc_doc
COSMIT missing whitespace in error message
Merge pull request #5572 from dohmatob/fix-5562
DOC some fixes to the doc build.
fix 1 sparse row scaling in robust scaler
Merge pull request #5688 from amueller/robust_scaler_1column_fix
FIX don't compare things that can be arrays to strings.
Merge pull request #5668 from amueller/multioutput_string_comparison
Merge pull request #5695 from amueller/doc_fixes
Add missing whatsnew entries for 0.17
Merge pull request #5708 from amueller/0.17_whatsnew
Merge pull request #5698 from gclenaghan/fix_5687
DOC Typo fixes in whatsnew. Thanks @jnothman
split installation into simple and advanced part
Merge pull request #5511 from KamalakerDadi/sphinx_version_added
skip doctests on 32 bits
Merge pull request #5692 from amueller/skip_32_bit_tests
Merge pull request #5257 from amueller/installation_instructions
Merge pull request #5740 from perimosocordiae/patch-2
DOC fix link to pdf documentation
Merge pull request #5742 from amueller/pdf_doc_link
Fix import of reload for python 3.3
Merge pull request #5846 from hlin117/whatsnew
Merge pull request #5860 from pwgerman/rbm_doc_hidden_units
Merge pull request #5885 from sieben/has_key_deprecated
Merge pull request #5834 from hugobowne/dev_requirement_documentation
REL add 0.17.0 release to news, fix versions in menu
Merge pull request #5828 from mth4saurabh/add-mlp-to-changelog
More doc fixes. Latex builds again.
Merge pull request #5886 from sieben/with_statement
website: added NYU funding to front-page footer and the about section.
Merge pull request #5910 from amueller/nyu_funding
fix link to contributing in website drop-down
Merge pull request #5829 from joshuacook/repair_link
Merge pull request #5890 from amueller/post_release_dev_doc_fixes
Merge pull request #5925 from lesteve/fix-coveralls
Merge pull request #5981 from seales/master
MAINT Don't use deprecated 1d X (or deprecated matplotlib stuff) in examples.
Merge pull request #5999 from jseabold/doc-fix
Merge pull request #5706 from shawpan/Fix-#5702-test-warnings-in-ranking
Merge pull request #6004 from leosartaj/affprop
Merge pull request #5578 from waterponey/circleCI_push
HOTFIX skip partial dependence plot so we can run circleci without errors.
HOTFIX actually fixing the california housing problem
Merge pull request #6018 from proinsias/provide_argument
Merge pull request #6034 from alexloginov/patch-2
install latex required for docbuild on circleci
DOC add links to some issues in whatsnew
Merge pull request #6229 from dsquareindia/LabelEncode-error-msg-fix
Merge pull request #6214 from mth4saurabh/minor-fix-RandomizedLasso-doc
Merge pull request #6293 from yenchenlin1994/fix-doc-typo-in-binary-tree
Merge pull request #6292 from yenchenlin1994/fix-error-message-in-check-cv
Merge pull request #6285 from yenchenlin1994/update-DictVectorizer-doc-about-one-hot-encoding
Merge pull request #6058 from davidthaler/carousel_fix
Merge pull request #6294 from rasbt/whats_new_typos
Merge pull request #5945 from mth4saurabh/improve-mlp-docs
Merge pull request #6260 from ogrisel/pr-5920-followup
Add numpy dev wheel to travis build matrix.
weird work-around for spearman test
add test for auto increasing
fix floating point indexing in generic univariate
make X_stride be np.npy_intp
Semantics of ``assert_almost_equal`` now consistent on floats and arrays. see https://github.com/numpy/numpy/issues/5200
add get_feature_names to PolynomialFeatures
fix PolynomialFeatures.powers_ in python 0.16.1
don't do ^1
fixed doc for powers, added test
Merge pull request #6379 from lesteve/fix-stratified-shuffle-split-train-test-overlap
Merge pull request #6411 from nelson-liu/create_issue_pr_template
Merge pull request #5699 from bhargav/mlp-test-warning
don't import train_test_split from deprecated cross_validation module in mlp
Merge pull request #6503 from rhiever/patch-1
ENH added elkan k_means algorithm
add booking.com testimonial
add badge for doi into readme (#6672)
Merge pull request #6677 from MechCoder/remove_checks_sparse
make Parallel be one less verbose in LDA (#6772)
DOC add betaworks testimonial (#6825)
Merge pull request #6966 from doshyt/doc-update-confusion
DOCS / COSMIT duplicate word typos
add __dir__ to bunch for better autocomplete (#7090)
add missing verb in whatsnew
fix error in boolean mask usage in GaussianNB. (#7258)
TST remove print statement in gmm test, remove verbosity in mlp test.
fix some warnings in test outputs.
gitter is not for issues
make more explicit which checks are run
pep8
fix warning and behavior in randomized_svd wrt power iterations
change default iterated_power to auto.
@ogrisel's suggestions
[MRG + 2] remove complicated equality checks in clone as __init__ shouldn't touch anything. (#5540)
DOC minor doc fixes for sphinx. (#7357)
change installation description to not discourage people from installing scipy or numpy with pip. (#7313)
[MRG+1] fix sampling in stratified shuffle split (#6472)
[MRG] add warning when importing old or new pickle. (#7248)
link to scikit-learn tag on stackoverflow, minor formatting.
COSMIT don't use docstrings in tests (gp kernel tests) (#7399)
make pickle version test more stable (#7415)
clean up deprecation warning stuff in common tests
added contributors for 0.18, minor formatting fixes.
[MRG+2] Timing and training score in GridSearchCV (#7325)
REL changes for release in 0.18.X branch (#7414)
no fixed width within bold
DOC Attempt to impose some order on What's New 0.18
fix rebase messup
fix scoring function table
minor fixes to whatsnew
fix lbfgs rename (#7503)
minor doc fixes
[MRG + 1] More versionadded everywhere! (#7403)
Andrew Jackson (1):
[MRG+1] DOC Modified the navbar menu to be responsive with mobile. (#7098)
Andrew McCulloh (3):
Change super call to pass presort value to super
The presort parameter is never acutally used
Merge branch 'master' of github.com:scikit-learn/scikit-learn into gradientboost
Andrew Murray (1):
Fixed typo
Anish Shah (1):
inverse_transformation for NMF decomposition
Arafat (1):
Correcting Typo
Archit Sharma (1):
fixes #6829 - user guide links to DiscriminantAnalysis (#6838)
Ariel Rokem (1):
Typo in `plot_cv example`
Arnaud Joly (25):
Implement decision path in tree
DOC add an example highlighting the tree structure
take glouppe comment
DOC make visualizatoin aware of the tree depth
ENH rename decision_paths to decision_path
Add an hardcoded test
typo
Add a decision_path function to forest estimator
Take into account glouppe comments
Take into account amueller comments
wording
Rename since we don't plot anything
Take into account ngoix comment
Merge pull request #5541 from johannah/module-classification-colorblind
Merge pull request #5537 from johannah/module-linear-colorblind
FIX serialization bug in the implementation of the pickle protocol
ENH don't unpickle capacity, but infer it
Raise appropriate error if y is sparse
Update what's new
Merge pull request #5546 from johannah/module-svm-colorblind
Merge pull request #5573 from johannah/module-model-colorblind
Update what's new
Merge pull request #5531 from arjoly/float-min_samples
Merge pull request #5665 from amueller/no_deprecated_residuals
Merge pull request #5654 from sieben/simplify_chain_comparaisons
Arnaud Rachez (2):
MAINT Removed deprecated stuff.
Addressed comments on PR #5451
Arthur Mensch (3):
Fix fit_transform, stability issue and scale issue in PLS
C file removal + cython build + Travis build cache
Add subpackage _build_utils
Ash Hoover (1):
ENH: classification_report format supports long string labels
Behzad Tabibian (8):
removing confusing comment (#7007)
fixing ElasticNet sparse decision function to match output with dense output
test case for ElasticNet multiple output matching with dense
pushing Transpose into dot product
removing make_sparse_data call
removing extra fit call and cleanup code
droping extra y
fixing alignment
Bernardo Vecchia Stein (1):
Added sample weight support to confusion matrix.
Bernhard Kratzwald (1):
DOC - improved doc on ridges alpha parameter (#6844)
Bhargav Mangipudi (3):
DOC - neural network module only links to unsupervised, not supervised docs
DOC - Minor documentation fixes - Fixes #5770 and #5761
Fix MLP batch_size test warning for default value
Boyuan Deng (1):
Fix broken link in ABOUT
Brandon Carter (4):
fix typo in comment of hierarchical clustering (#6912)
fix issues with manifold tests throwing pep8 errors (#7209)
[MRG] Fix TSNE init as NumPy array (#7208)
[DOC] add release dates for each version on whats_new page (#7225)
Brett Naul (1):
Properly handle bounds in isotonic regression with `np.clip` (#6949)
Brian McFee (1):
Implemented keyword arguments in FunctionTransformer
CJ Carey (2):
BUG: use pre-parsed scipy version
avoid creating a diagonal matrix (#6989)
Caio Oliveira (1):
[MRG+1] Fix for "_transform_selected" not copying when "selected='all'" (#7201)
Camilo Lamus (5):
FIX: improve docs of randomized lasso
Fix consistency in docs and docstring
Added ref to Bach and improved docs
Try to fix link to pdf
fix x and y order
Carol Willing (2):
Edit CONTRIBUTING doc (#7017)
Reorganize README
Cass (1):
Update decomposition.rst
CeShine Lee (1):
DOC Correction: max_depth is effective when max_leaf_nodes is not None (#7183)
Charles Truong (1):
Fixed the docstring (issue #5313)
Chyi-Kwei Yau (1):
fix joblib error in LatentDirichletAllocation
Colin Ni (1):
[DOC] Added return values to _intercept_dot docstring in linear.logistic
Dan Shiebler (1):
removed the doc line 'Only applies if analyzer == 'word'' from CountVectorizer analyzer'
Daniel (1):
Replace print statement in fastica() with warning (#6807)
Daniel Hnyk (2):
importing VotingClassifier in the example
Sync docstring and definition default argument in kneighbors (#7476)
David Ellis (1):
Update plot_roc_crossval.py (#6765)
David Nicholson (1):
typofix in modules/grid_search.rst (#7045)
David Staub (3):
Updated docstring for bootstrap argument of IsolationForest (#7095)
[MR] Speed issues in sample_without_replacement - bugfix (#7104)
[MRG] Remove heavy memory footprint in BaseBagging due to OOB scoring (#7118)
David Thaler (2):
FIX Changed zorder so support vectors are clearly visible
FIX #5485 Replaced missing plot_gp_regression with plot_gpr_co2 in carousel.
David Warshaw (1):
Removed redundant Classification metrics entry: metrics.brier_score_loss.
Davide Lasagna (1):
change "lasso_path" to use "return_n_iter" argument
Deborah (1):
[MRG+1] Deprecated GMM functions (#7012)
Didi Bar-Zev (1):
ENH TfidfTransformer.transform() performance bug fix (#7125)
Elias Kuthe (1):
typing mistake
Elvis DOHMATOB (5):
ENH: fixes issue #5484
BF: FIX OvR decision_function_shape in SVC
DOC: added <what's new> entry regarding BF
REFACTOR: fixed huge code duplication in _RidgeGCV
DOC+ENH: RidgeClassifier doesn not support multi-label
Ethan White (1):
Improve wording for best choice of calibration method
Fabian Pedregosa (1):
Update my website on whats_new.rst
Fabio Ticconi (3):
Fixed transformation of test set via RobustScaler in plot_robust_scaling.py
adding missing 0.16 doc link and removing broken support links
adding 0.17 support link
Florian Wilhelm (2):
Added additional references for ARDRegression
DOC: Fix order in ARD references
Francis O'Donovan (1):
DOC Add missing parameter defaults for Naive Bayes classes
Francis T. O'Donovan (4):
Provide 'self' argument to instance method
Fix minor typo in grid_search.py
DOC Add missing parameter defaults for some ensembles
Fix doc refs to StratifiedKFold and KFold (#6936)
Gael Varoquaux (71):
MAINT: remove unused import
Merge pull request #5440 from giorgiop/scaler-deprecation
Merge pull request #4995 from yanlend/patch-1
Merge pull request #5454 from GaelVaroquaux/test_branch
Merge pull request #5443 from AlexandreAbraham/optimize_graph_is_connected
Merge pull request #5458 from glouppe/labelkfold-withoutshuffle
Merge pull request #5452 from MaryanMorel/issue_5313
Merge pull request #5445 from tomMoral/devTom
Merge pull request #4826 from rvraghav93/exceptions
Merge pull request #5431 from hlin117/nan-targets
Merge pull request #5012 from yanlend/patch-2
Merge pull request #5467 from tomMoral/travis-ci
Merge pull request #5579 from rvraghav93/inspect_fix
Merge pull request #5590 from glouppe/param-sampler-rng
Merge pull request #5636 from TomDLT/appveyor_logistic
Merge pull request #5652 from sieben/trailing_semicolon
Merge pull request #5658 from amueller/train_test_split_conserves_type_doc
Merge pull request #5682 from trevorstephens/OneHotEncoder_warn_fix
Merge pull request #5684 from amueller/deprecated_float_indexing_rfe
Merge pull request #5680 from amueller/lda_fix_refactoring
Merge pull request #5727 from Naereen/patch-2
Merge pull request #5801 from hlin117/pca-plotting
Merge pull request #5791 from MechCoder/scale_csc
Merge pull request #5819 from hlin117/pca-docs
Merge pull request #5771 from bhargav/minor-doc-fixes
Merge pull request #5728 from amueller/more_doc_fixes
Merge pull request #5896 from fayeshine/fayeshine-patch-1
DOC: Comment better the importance of the mask
Merge pull request #5936 from olologin/MultiLabelBinarizer_check_is_fitted
Merge pull request #6108 from chezou/chezou-patch-1
Merge pull request #6005 from seales/SpellingFix
Merge pull request #6087 from kaichogami/binary_partial_fit
COSMIT: whitespace
Merge pull request #5219 from scikit-learn/authors-update
Merge pull request #6151 from MechCoder/silhouette_score_refactor
TST: More tests for Ledoit-Wolf
Merge pull request #6227 from strixcuriosus/classification-report-format
Merge pull request #6225 from ogrisel/fix-6147-scoring-memmap
Merge pull request #6152 from halwai/faq
DOC: incorrect phrasing of inputs to roc
Merge pull request #6125 from AnishShah/issue6118
Merge pull request #6354 from rgommers/fix-build-error
Merge pull request #6343 from lesteve/fix-tsne-memory-leak
Merge pull request #6391 from yenchenlin1994/remove-redundant-assignment-in-test-locally-linear
Merge pull request #6396 from nelson-liu/reorganize_build_files
Merge pull request #6349 from yenchenlin1994/remove-redundant-shuffle-assignment
Merge pull request #6426 from yenchenlin1994/remove-redundant-typo
Merge pull request #6543 from ohld/update-footer-year
Merge pull request #6705 from mathcass/decomposition_typo
Merge pull request #6790 from arokem/patch-1
Merge pull request #6274 from jakevdp/setup_py_fix
Merge pull request #6613 from nelson-liu/correct_license_spelling
Merge pull request #6908 from HashCode55/master
Merge pull request #6900 from fishcorn/fishcorn-patch-1
TST: Speed up: cv=2
Merge pull request #6946 from proinsias/proinsias-doc-nb
Merge pull request #6979 from ClimbsRocks/patch-8
Merge pull request #7064 from Erotemic/quickfix_py2_libsvm_kernel_unicode
Merge pull request #7119 from jrfiedler/remove-unused-imports
Merge pull request #4658 from Titan-C/sphx-glr
Contributing statement (#7097)
Merge pull request #7165 from tKammy/fixed_typo
Merge pull request #7172 from jasonlaska/patch-1
Merge pull request #7143 from iver56/patch-1
Merge pull request #7199 from nelson-liu/edit_cv_sparse_docs
Merge pull request #7213 from zhengruifeng/doc_fix
Merge pull request #7217 from ClimbsRocks/patch-9
MAINT/DOC: pngmath deprecated for sphinx >= 1.4 (#7279)
Merge pull request #7261 from betatim/negative-scorers
ENH: display the original exception (#5906)
ENH: display the original exception (#5906)
Ganiev Ibraim (5):
Fix of issue #5601
check_is_fitted validation for transform() and inverse_transform()
It's better to fix a comment
[MRG] fix #5269: Overflow error with sklearn.datasets.load_svmlight (#7101)
[MRG+2] parallelized VotingClassifier and sample_weight support (#5805)
Gilles Louppe (49):
Merge pull request #5423 from MechCoder/example_fix
Merge pull request #5375 from rvraghav93/set_precision
FIX: remove shuffling in LabelKFold
Merge pull request #5466 from glouppe/gp_new
DOC: added entry for new GP implementation
doc: fix typo
FIX: gaussian_process will be deprecated in 0.19, not 0.18
Merge pull request #5438 from aabadie/datasets_doc
Merge pull request #5494 from dohmatob/minor-issues
FIX: GaussianProcess will be deprecated in 0.20, not 0.19
Merge pull request #5469 from rvraghav93/zero_gamma
Merge pull request #5543 from ltiao/patch-1
DOC: fix what's new alignment
Merge pull request #5582 from gclenaghan/remove_balanced_weights
Merge pull request #5587 from jnothman/model_selection-whatsnew
Merge pull request #4163 from ngoix/iforest
doc: added entry for isolation forest
Merge pull request #5552 from johannah/module-tree-colorblind
Merge pull request #5556 from johannah/module-feature-colorblind
Merge pull request #5575 from johannah/module-other-colorblind
FIX: pass random_state to parameter distributions
Merge pull request #5591 from antialias/master
Merge pull request #5592 from antialias/correct-typo
Merge pull request #5607 from giorgiop/doc-broken-links
Merge pull request #5645 from sieben/useless_pass
Merge pull request #5646 from mscherer/fix_doc
Merge pull request #5667 from amueller/theilsen_test_closes_dev_null
Merge pull request #5700 from bhargav/neural-network-documentation
Merge pull request #5731 from ClimbsRocks/patch-2
Merge pull request #5714 from rvraghav93/learning_curve_doc
DOC: fix what's new alignment
Merge pull request #5678 from betatim/no-warning-iforest
Merge pull request #5806 from vighneshbirodkar/nmf_fix
Merge pull request #5802 from alvarouc/master
Merge pull request #5858 from mcculloh/gradientboost
Merge pull request #6111 from betatim/base-not-a-list
Merge pull request #5880 from jakevdp/spectral-doc
Merge pull request #5675 from AlexanderFabisch/gmm_clustering
Merge pull request #5863 from trevorstephens/cw_util_fix
Merge pull request #5872 from lucasdavid/parallel-nn-in-isomap
Merge pull request #6362 from hlin117/dummy
Merge pull request #6542 from ohld/make_scorer-link
Merge pull request #6498 from clamus/rand-lasso-fix-6493
Merge pull request #6466 from lesteve/nose-ignore-files-tweak
Merge pull request #6638 from braunmagrin/patch-1
Merge pull request #6935 from proinsias/proinsias-gs-typo
Merge pull request #6944 from proinsias/proinsias-rfc-doc-defaults
Merge pull request #6982 from fisache/master
Merge pull request #7062 from neo01124/master
Giorgio Patrini (19):
BUG: reset internal state of scaler before fitting
MAINT: deprecation warns from StandardScaler std_
randomized_svd: power iter, normalization, benchmark
DOC versionadded randomized_svd
DOC: only 'sag' supports sparse input in Ridge now
DOC: broken links
tests sample_weights linearreg, ridge
nose-timer added to CI
MAINT speed up test_gpc
MAINT speed up test_gpr
MAINT speed up test_kernels
MAINT speed up test_extmath
MAINT speed up test_coordinate_descent
MAINT speed up tests in test_neighbors
MAINT speed up test_split
Limit the number of thread and force install libgfortran
MAINT depr of center_data, normalize in linear_model
ENH RandomizedPCA collapsed into PCA
Update Python version in README
Giovanni Cherubin (1):
Kullback-Leibler divergence as a parameter of TSNE
Giovanni Lanzani (1):
Add a check whether stripping accents is needed (#6805)
Glenn Qian (2):
fix log_loss for multiclass case and add binary_log_loss for multilabel case
Finish up mlp_refactoring and squash previous commits
Gordon Mohr (1):
[MRG+1] test against single-class y_true values for #6980 (#6987)
Graham Clenaghan (2):
remove _balance_weights
Ensure that n_nonzero_coefs is an int
Greg Reda (1):
fix math in soft VotingClassifier example
Greg Stupp (1):
use sparse contingency matrix for supervised cluster metrics
Guillaume Lemaitre (1):
Add the possibility to add prior to Gaussian Naive Bayes
Gustav Mörtberg (1):
[MRG] Fixed issue #6635: incorrect docstring for Birch
Harizo Rajaona (3):
Proper fix for issue #5694: added [RW2006]'s corresponding reference with link to the book's website and PDF version available online.
Reduced nb of characters per line.
Reduced size of line 167.
Harry Mavroforakis (1):
Fixes make_sparse_spd_matrix documentation
Henry Lin (35):
#5322: Wrote check_supervised_y_no_nan in estimator_checks
Resolving rebase conflicts on forest.py
#5322: Added check for DecisionTreeRegressor
#5322: Resolving errors for SVR and NuSVR
#5322: Fixed build for tree failures, fixing estimator_checks.check_estimator
#5322: Added check for MultiTaskElasticNet and MultiTaskLasso
#5322: Resolving Random Forest build errors (bad input shape)
#5322: Fixing the fix - now RFs should be okay
#5322: Fixing test in test_estimator_checks.test_check_estimator
#5322: check_supervised_y_no_nan raises error when error message is incorrect
#5322: Fixed python3 build
#5322: Regression test for test_check_estimator
#5322: Made error message in check_supervised_y_no_nan more helpful
#5322: Making check_supervised_y_no_nan deterministic
#5322: Addressing @MechCoder's changes
#5322: Removing unused ConvergenceWarning import in svm/base.py
Added documentation about y nan handling in check_X_y
#5322: Changed check_supervised_y_no_nan to not seed global
#5322: Using multioutput_estimator_convert_y_2d in check_supervised_y_no_nan
#5322: Small change to estimator_check.py
#5766: Removed unused code from plotting tutorial
#5751: Adding explained_variance_ and clarification about components_ to docstring
#5840: Adding my name to one of the bug fixes
Adding email to the mailmap
LDA: explained_variance_ratio_ can be found using svd solver
Added default gamma info for laplacian_kernel and rbf_kernel
Added more gamma info for sigmoid, polynomial kernels
Changed orders of docstring descriptions for polynomial_kernel
\#6001: Adding LogisticRegression's default param for 'solver'
DummyClassifier: Added doc information about default strategy
Fixing typos in logistic regression docs
Merge PR #6037: copy_X in KernelPCA
Fixed minor typo in multitasklasso docs
and related minor documentation fixes
[MRG + 1] DOC Default parameter info for KernelPCA (#6035)
Hobson Lane (4):
fix regressor var name
clf = Perceptron
make it clear that linear_model.Perceptron is a classifier
colon
Hugo Bowne-Anderson (8):
added cython to requirements in documentation
edited cython to requirements in documentation
edited cython requirement in README making obvious that it is for dev
Merge branch 'dev_requirement_documentation' of https://github.com/hugobowne/scikit-learn into dev_requirement_documentation
edited bleeding edge install instructions to include cython
Update README.rst
Update advanced_installation.rst
added MultiOneVsRest classifier & testing suite
Igor Andriushchenko (6):
DOC make confusion_matrix_plot.py exmaple more copy-pastable
DOC update refs for MiniBatchKmeans
DOC fix MiniBatchKmeans See Also and colon
DOC harmonize KMeans docstring with doc standards
DOC fix typo in KMeans docstring
[MRG] Add Deprecation Warning to address making "batch" the default learning method in LDA in 0.19 release (#6999)
Imaculate (3):
Added sample_weight parameter to ransac.fit
[MRG+1] Added support for sample_weight in linearSVR, including tests and documentation. Fixes #6862 (#6907)
[MRG] Added sample weight parameter to LinearSVC.fit (#6939)
Inki Hwang (1):
Fix minor typo in doc (#7001)
Isaac Sijaranamual (1):
Fixes the link to Bawa et al., "LSH Forest: Self-Tuning Indexes for Similarity Search", WWW'05 in the Nearest Neighbor section.
Ishank Gulati (1):
as_float_array removed
Issam Laradji (1):
(WIP) Added Multi-layer perceptron (MLP)
Iver Jordal (1):
Fix typo in example feature_stacker.py
JPFrancoia (3):
Added 4 spaces to conform to PEP8.
Modified the length of the slice: now uses a variable, not a hardcoded
Modified the What's new file to mention the bug fix about the wrong
Jacob Schreiber (1):
ENH add pomegranate to related
Jake VanderPlas (14):
MAINT: use xrange from six
MAINT: remove unused code from TSNE
DOC: clarify terms in documentation of Spectral Clustering
DOC: further clarify spectral clustering doc
BUG: fix initialization in Isomap to work correctly with GridSearch
BUG: fix pickling of DistanceMetric instances (fixes #6269(
Merge pull request #6393 from yenchenlin1994/add-test-for-local-linear-embedding
Merge pull request #6447 from MechCoder/whiten_pca
Merge pull request #6372 from amueller/poly_feature_names
Merge pull request #6453 from yenchenlin1994/fix-its-typo
MAINT: re-organize setup.py & make sure all tests are discoverable by nose
MAINT: fix setup for metrics/cluster
TST: fix relative import in model_selection tests
TST: make model_selection test an absolute import
James Fiedler (1):
Removed unused imports
James Routley (1):
Fixing typo (#7402)
Jan Hendrik Metzen (165):
ADD New kernel module for GPs which supports kernel engineering
ADD New implementation of GaussianProcessRegression
ADD Gaussian Process classification based on Laplace approximation
TST Tests for GP regression and classification
ADD Examples for GP classification
ADD Examples for GP regression
FIX cross_correlation of anisotropic RBF kernel computed correctly
FIX Fix some bugs in kernel module discovered during writing unit test
TST Test for GP kernels
REFACTOR auto_correlation() -> auto(), cross_correlation() -> cross()
DOC GP's kernel module documented
DOC Revised GP examples (added doc etc.)
ENH GPR.predict allows returning standard-deviations of predictions
DOC Revised examples based on @eickenberg's comments
MISC Revised gaussian_process package based on @eickenberg's suggestions
TST Dealing with failing tests from test_common
REFACTOR Merging kernel methods auto() and cross() in __call__()
ENH Adding PairwiseKernel for GPs (wraps kernels from metrics.pairwise)
REFACTOR GaussianProcessClassification/Regression -> ...Classifier/Regressor
ENH More efficient approximation of gradient in PairwiseKernel
ENH Avoid to create square matrix W_sr in all but one place (TODO)
ENH Adding RationalQuadratic and ExpSineSquared kernels
FIX Dealing with singular kernel matrix (-inf log-marginal-likelihood)
ENH Adding DotProduct kernel and fixing ExpSine2 kernel
DOC Initial version of Mauna Loa CO2 example
REFACTOR Hyperparameter optimization in GPs enabled explicitly by optimizer parameter
DOC Revising CO2 example
TST Cover more kernels in tests
ENH Analytic gradients for ExpSine2, RationalQuadratic, DotProduct kernels
DOC Extended documentation of GP kernels module
MISC Reorganizing kernel module
ENH Adding method is_stationary to GP kernels
TST Testing kernel stationarity
DOC Illustrating different kernels in plot_gpr_prior_posterior.py
FIX test_converged_to_local_maximum deals with convergence to boundary
ENH More efficient computation of lml-gradient in GPR using einsum
FIX GPs do not modify kernel attribute but store optimized kernels in kernel_
REFACTOR GP kernels use separate specification of bounds and params (no joint param_space)
REFACTOR REnamed kernel property params to theta
ENH Kernel implements equality check and get_params() method
TST Tests for cloning kernels with sklearn.base's clone function
REFACTOR Replacing all calls to deepcopy() by clone()
TST Replace call to deepcopy() by clone()
ENH Added Exponentiation kernel (DotProduct no longer has internal degree)
TST test_kernels tests Exponentiation kernel
FIX Using numpy-downward compatible ones_lile() instead of full_like()
DOC Reorganizing gaussian_process examples
FIX Minor bugfixes and downward-compatibility/python3 issue
REFACTOR Rename GPR method sample to sample_y
REFACTOR Compute standard deviation of predictive distribution at n points in O(n)
FIX GPC uses LabelEncoder in fit() and returns (n_samples, n_classes) array in predict_proba()
FIX Adapted examples and tests to GPC.predict_proba() adapted return shape
FIX GaussianProcessRegressor inherits from RegressorMixin
ENH Reducing memory-consumption of GPC.predict_proba()
FIX Numpy downward-compatible way of computing sum over two axis
ENH GPC can use warm-starts in _posterior_mode()
ENH Adding diag(X) method to GP kernels.
DOC Adding GPC to plot_classifier_comparison.py script and enabling warm_start
DOC gpr module fully documented
DOC gpc module fully documented
REFACTOR Kernel hyperparamters are now set via their name
TST Adapted tests to changes in kernels and added additional test for theta property
DOC Adapted GP examples to changes in kernel module
FIX Kernel property theta can deal with anisotropic RBF kernel
FIX Dealing with anisotropic length-scales correctly
DOC Revised docstrings of kernels.py
REFACTOR Removed literal form of specifying bounds for ConstantKernel
REFACTOR Changed order of l and alpha in RationalQuadratic kernel
ENH GPR can use individual noise-levels for each datapoint
ENH GaussianProcessRegressor supports multiple restarts of the optimizer
TST An increasing number of random-starts of GPR only increases the LML of the chosen theta.
DOC Adapted old example of fitting with noisy targets to new GPR class
ENH GaussianProcessClassifier supports multiple restarts of the optimizer
TST An increasing number of random-starts of GPC only increases the LML of the chosen theta.
FIX Fetching CO2 data from mldata
FIX GP kernels check for type equality before checking attribute equality
FIX cross_validation and pairwise_kernels treat GP kernels as special case
DOC Adding example comparing kernel ridge with GPR.
DOC Revised plot_gpc example
DOC Adding documentation for GP kernels
DOC Documentation of the CO2 example
DOC Backported documentation to kernels module
DOC Extending further the GP documentation
ENH GPR supports normalization of target values
TST Testing normalization of output values in GPR
ENH GPR supports target value with more than one dimension
TST Testing multi-out GPR
FIX Not performing hyperparamter-tuning in GPR if there are no hyperparameters
ENH GPR can use an externally defined optimizer for hyperparameter tuning
TST Testing GPR with custom external optimizer
REFACTOR GP kernel hyperparameters theta and their bounds are log-tranformed
TST Adapting GP tests to changed hyperparameter representation
DOCAdapting GP examples to changed hyperparameter representation
REFACTOR Remove theta_ attribute from GPR and GPC
ENH GPC can use an externally defined optimizer for hyperparameter tuning
TST Testing GPC with custom external optimizer
REFACTOR normalize_y in GPR does not modify standard-deviation
FIX Sampling theta_intial uniformly from log-bounds in GPR
FIX Correcly composing theta vector in GP kernels
FIX Ensuring that predicted variances are never negative
ENH Adding Matern kernel for Gaussian Processes
DOC Adding documentation on Matern kernel
TST Added test checking that GPR can deal with different outputs for same input
FIX Checking for correct dimensionality of anisotropic kernels
FIX RBF and Matern kernel handle 1d length 1 length-scales correctly
DOC Added further doc for GPC
ADD CompoundKernel for multi-class GP classification
FIX GPR's random_state is cloned correctly
ENH Support for multi-class GPC added based on OneVsRestClassifier
DOC Adding GPC to plot_classification_probability.py example
TST Testing GPC for multi-class classification problems
FIX Several minor changes/fixes in gaussian_process module
FIX Using six.string_types instead of basestring (python3 compatibility)
FIX Excluding WhiteKernel from one unit-test
TST Extending testing of multi-class GP
DOC Updated documentation of Gaussian process classifier
ADD Example illustrating Gaussian process classifier on iris dataset
TST Fixing some GP-releated issues in estimator checks
TST Fix GPC and GPR such that all tests are ok
TST Further GP-related fixes
FIX Hiding method decision_function in GaussianProcessClassifier
TST GaussianProcessRegressor added to MULTI_OUTPUT estimators
PEP8 Fixing PEP8 issues in gaussian_process package
ENH X_train_ can be copied if requested
ENH Adding max_iter parameter for Newton iteration in GPC
COS Removing keyword magic from PairwiseKernel
FIX Added missing import of ConstantKernel in gpc.py
TST Excluded GPC from test_non_transformer_estimators_n_iter()
MISC Deprecating legacy GP implementation
COS Making BinaryGaussianProcessClassifierLaplace private
DOC Cleaning up documenation of legacy GPs
DOC Updating GPC XOR example (showing also results for DotProduct kernel)
FIX Remove BinaryGaussianProcessClassifierLaplace from packages __all__ list
FIX Undoing regression_model and correlation_model deprecation
TST Testing n_jobs option of GaussianProcessClassifier
REF Realizing multi-class GPC bei delegating to OneVsRest or OneVsOne
DOC Updating documentation of multi-class GPC
REF Several small changes based on @eickenberg's suggestions
ENH More efficient computation of K_gradient for anisotropic Matern kernel
REF Renaming sigma_squared_n to alpha (consistency with Ridge)
ENH Full support of (deep) get_params() and set_params() in GP kernels
DOC Revising GP documentation based on @kastnerkyle comments
FIX theta_vars correctly supported in KernelOperators
TST Adding two unittests for testing GP kernels
REF Removing theta_vars attribute from kernels and using Hyperparameter instances instead
DEL Removing bounds.setter in kernels.py
REF Renaming max_iter to max_iter_predict in GaussianProcessClassifier
DOC Documenting GP kernel API
DOC Fixing some minor issues in narrative doc of GPs
FIX Fix failing tests (doctest, order of hyperparameters, pairwise_kernels)
FIX python3 compatibility in doctest
FIX Fixing test_kernel_theta
FIX Further python3 related fixes
FIX Fixing a python2.6-related issue
FIX Changing bounds in GP doctest
MISC copy_X_train defaults to True in GPR and GPC
FIX Fix message of ValueError for wrong shape of alpha in GPR
PEP8 Making pep8 and pyflakes happy
REF More meaningful names for hyperparameters of GP kernels
MISC Changing default for copy_X_train to True in GaussianProcessClassifier
FIX String comparison via equality and not identity in Hyperparameter.__init__
ENH GPR.log_marginal_likelihood() returns the current log-likelihood if no theta vector is provided
FIX Enforcing y to be numeric in GPR and fixing python3 issue with maps
ADD Mixins for normalized and stationary kernels
TST test_lml_precomputed() checks only for equality in first 7 digits
Janna Brettingen (1):
[MRG + 1] docs: Change example of KDTree to prevent DeprecationWarning (#6962)
Jason Laska (2):
Add spherecluster related package
Address reviewer comments
Jeffrey Blackburne (1):
Fixed unit test in sklearn/tree/tests/test_tree.py.
Jeffrey04 (7):
the test to reflect issue #5433
code fix for issue #5433
updated test with tips from @giorgiop
fixing MaxAbsScaler according to MinMaxScaler
add test for inverse_transform
add fix for inverse transform
remove test for self.scale_
Jeremy Hintz (1):
updating changelog links on homepage (#6901)
Jeroen Van Goey (1):
Update plots_digits_classification.py
Jessica Yung (1):
DOC Typo: consequective -> consecutive (#7171)
Jill-Jênn Vie (1):
TYPO Update decomposition.rst (#6803)
Jimmy Jia (1):
BLD: Add 'alldeps' extra for installing with pip (#6990)
Jiyuan Qian (1):
MLP bug fixes with random state and loss, removed decision_function, and added test
Joel Nothman (66):
DOC update AUTHORS.rst to better reflect team
DOC describe constitution of AUTHORS.rst list
DOC sort AUTHORS.rst by surname
DOC clearer what's new for model_selection
Merge pull request #5749 from ethanwhite/calibration-wording
Merge pull request #6088 from duboism/solve6078
Merge pull request #6157 from lesteve/fix-faq-link
Merge pull request #5425 from amueller/update_doc_readme
ENH use n_jobs in brute-force radius_neighbors
Merge pull request #6404 from dsquareindia/dbscan_doc_enh
Merge pull request #6566 from practicalswift/fix-nameerror-and-remove-unused-variable-in-multiclass
Merge pull request #6539 from yenchenlin1994/use-fused-type-in-inplace-normalize
Merge pull request #6653 from davidwarshaw/doc-remove-redundant-brier_score_loss
Merge pull request #6658 from ClimbsRocks/patch-5
Merge pull request #6607 from maniteja123/imputer_indicator
Merge pull request #6682 from hlin117/multilasso
Merge pull request #6698 from ixjlyons/fix-neighbor-docs
Merge pull request #6707 from saiwing-yeung/my-fixes
Merge pull request #6671 from zivori/model_seclection._validation.cross_val_predict_apply_func
COSMIT better test name
Merge pull request #6770 from nelson-liu/fix_check_array_typo
Merge pull request #6760 from maniteja123/average_precision
Merge pull request #6755 from hnykda/hnykda-fix-votingclassifier-example
FIX bug where expected_mutual_information may miscalculate
Merge pull request #6724 from jnothman/emi_bug
DOC minor whats_new tweaks
ENH remove excessive verbosity when no parameters set for CV
Merge pull request #6610 from jeff1evesque/feature-6609
Merge pull request #6817 from TomDLT/logistic_class_weight
Merge pull request #6785 from yenchenlin1994/make-csr_row_norms-support-fused-types
Merge pull request #6801 from jnothman/noparams
Merge pull request #6850 from kmike/class_weight_error
[MRG+1] FIX support memmap scalars as CV scores (#6789)
Merge pull request #6853 from krishnakalyan3/class_weight_balance
DOC insert missing function description
DOC fix broken image path
PEP8
TST ensure tests are importable
DOC If git is not installed, need to catch OSError
DOC add what's new for clone fix
TST avoid imports from deprecated module
DOC what's new entries for LinearSVR/C weight support
DOC fix misconception in DBSCAN documentation
DOC revert removal of duplicate word in doctest
[MRG + 1] ENH show no warning with chi2 of empty feature (#6978)
DOC fix Olivier's misspelt name
DOC improve formatting for learning_rate docstrings
[MRG] ENH enable setting pipeline components as parameters (#1769)
Revert "ENH: Add indicator features to imputer output (#6607)" (#7292)
ENH/MAINT/TST Complete deprecation of default average in P/R/F metrics
PEP8
Move comment on relationship between labels and pos_label to docstring
DOC fix code formatting
DOC move changelog heading to correct place
TST fix test to match altered deprecation msg
FIX Revert unintentionally committed code
[MRG + 1] FIX use high precision cumsum and check it is stable enough (#7331)
DOC mention true positives etc in confusion matrix docs (#7392)
Fix #6994: MLP partial_fit with unseen classes (#7358)
TST fix generated test names in case where test fails
TST move test naming and use inspect
Make named_check private
ENH raise error when scoring=sklearn.metrics.{classification,ranking,...}.*
[MRG+1] Fix regression in silhouette_score for clusters of size 1 (#7438)
[MRG+2] FIX adaboost estimators not randomising correctly (#7411)
DOC more what's new subdivision
John B Nelson (1):
Add missing double quote (#6831)
John Boersma (10):
Test edit.
Removing test edit.
Moved Multi-task Lasso to immediately follow Lasso
Edits to intro paragraph of Multi-task Elastic net.
Edits to math paragraph, added reference to MultiTaskElasticNetCV.
Corrected reference to "lasso" to "ElasticNet".
Correct for Frobenius norm
Corrected {}
Corrected MultiTaskLasso objective function and moved some related definitions there
Fixed typos: whitespace after '.', `` around inline code.
John Kirkham (1):
DOC: Use SVG badge for Travis CI. [ci skip]
John Moeller (4):
Make KernelCenterer a _pairwise operation
Adding test for PR #6900
Simplifying imports and test
pep8
Jordi (1):
[MRG] Disabled randomized_svd warning when number of iterations is not specified #6746 (#6749)
Joseph Munoz (1):
Fixed typo in one word.
Joshua Cook (1):
repaired dead link
JulianKahnert (1):
fix of typo (#7137)
KamalakerDadi (4):
Version Added for Robust Scaler
Version added for all new classes
Added more documentation of version adds
Added more versions of 0.17
Kenneth Lyons (2):
[DOC] clarify distance mode in graph creation functions.
[MRG+1] Check for bad labels in confusion_matrix. (#6958)
Kevin Wang (1):
DOC cross-reference preprocessing estimators and functions in their docstrings
Kirill Bobyrev (1):
Addressing issue #7468. (#7472)
Konstantin Podshumok (1):
[MRG+2] ENH: (minor) add quantile_low/high parameters to robust scaler (#5929)
Kornel Kielczewski (1):
Ridge coefficients as a function of regularisation
Krishna Kalyan (1):
link to gpr guide (#6885)
Kvle Putnam (2):
Fix minor typo in RandomizedSearchCV documentation
Fix omitted word in SVM-Anova example
Kyle Jackson (3):
DOC Fixed check_estimator example (#7025)
[MRG] DOC updated normalize param docstring (#7161)
[MRG] DOC removed redundant word from KNN docs (#7345)
Lars Buitinck (4):
COSMIT nicer output from NMF with verbose > 0
MAINT/TST: public export of non_negative_factorization
Merge pull request #6327 from yenchenlin1994/fix-lda-transform-output-probability
MAINT remove my email address
LeiG (1):
#5877 fix confusing n_samples and n_features
LeightonZhang (1):
DOC: minor docstring format fixed (#7249)
Leland McInnes (1):
Update related_projects.rst
Liang-Chi Hsieh (1):
[MRG+1] Add a set recording pushed elements in DBSCAN (#6799)
Lilian Besson (8):
Typo on doc for default value of solver for lda.LDA
Update copyright year in the doc footer (2014 → 2015)
Update svm.rst
Update svm.rst
Update cross_validation.rst
Update svm.rst
Add and print a total_n_estimators information
Two typo on my change, sorry
Loic Esteve (33):
MAINT use super rather than calls to base class methods
MAINT update joblib to 0.9.3
Fix coveralls report sending
FIX fetch_california_housing
DOC fix FAQ link at the bottom of main page
Fix reading of bunch pickles
Added changelog entry about #6196
Fix test_label_binarizer on Windows
Add sklearn/preprocessing/tests to source distribution
MAINT simplify freeing logic for Barnes-Hut SNE memory leak fix
FIX StratifiedShuffleSplit train and test overlap
MAINT temporary disable MKL in Travis
Do not ignore files starting with _ in nose
Fix IsotonicRegression __setstate__ (#6729)
[MRG+1] Reenable MKL for python 3.5 in Travis (#6661)
FIX segmentation fault in libsvm (#6708)
Fix CircleCI failure (#6903)
Fix sklearn.base.clone for all scipy.sparse formats (#6910)
COSMIT fix typo in author name
Merge pull request #7041 from jnothman/dbscan_doc
DOC joblib default start method is not forkserver (#7077)
COSMIT fix python2 -> python3 in comment
Use pgtol parameter in fmin_l_bfgs call (#7167)
MockDataFrame.__array__ should take an optional dtype
NotAnArray.__array__ should take an optional dtype
[MRG+3] Add flake8 linting of the diff in Travis (#7127)
Update joblib to 0.10.2
Exclude sklearn/externals from diff for flake8
Merge pull request #7300 from nelson-liu/rename_unveil_tree_structure
Merge pull request #7282 from asnt/fix-convergence-warnings
Fix flake8_diff.sh when Travis runs in a fork
Change flake8_diff.sh logic for branch in main repo (#7437)
Fix typo in whats_new.rst
Louis Tiao (1):
Fixed typo..
Léonie Borne (1):
[MRG+1] RadiusNeighborsClassifier edit (#6918)
Mads Jensen (1):
fixed error message when y_pred and y_test labels don't match
Maniteja Nandana (7):
Solves issue #5715: enables pandas input to log_loss
MAINT: Print info message for fetch_20newsgroups
DOC: Clarify the scoring in Logistic Regression
DOC: Correct some errors in chebyshev distance
Meta estimator for multi output classification
ENH: Add indicator features to imputer output
DOC: Improve docs for average precision score
Manoj Kumar (57):
Fix broken examples using RandomTreeEmbeddings
Merge pull request #5421 from shagunsodhani/proposed-fix-for-#5387
Patch liblinear for sample_weights in LogisticRegression(and CV)
Add check for sample_weights
Replace GETC to SAMPLE_WEIGHT
HOTFIX for incorrect cast in liblinear.pyx
DOC: Correct confusing docs of n_values in OneHotEncoder
Merge pull request #5755 from rvraghav93/fix_depr_version
Merge pull request #5492 from arthurmensch/remove_cython
Scaling a sparse matrix along axis 0 should accept a csc by default
Merge pull request #5783 from varun-kr/check_classification_bug
Merge pull request #5251 from TomDLT/sag_multi
Parallelize embarrassingly parallel loop in RFECV.fit
Merge pull request #5784 from MechCoder/parallel_rfecv
Update whats_new.rst
Merge pull request #6048 from zhengqm/fix-cluster-example-bug
FIX: Cluster centers after fir in KMeans and MBKMeans need not be ordered in the same way
First pull request of 2016!
Merge pull request #6119 from Qwasser/fetch_lfw_pairs-target-shape
Merge pull request #5833 from welch/issue-5581-doc-warm-start
Make ridge path with ill-conditioned matrices clearer
Use row_norms in f_regression
Update whats_new for partial_fit OvR and OvO
Merge pull request #6139 from dsquareindia/fetch_lfw_doc_fix
Merge pull request #6150 from MechCoder/fix
Deprecate residual_metric and add support for loss
Merge pull request #5497 from MechCoder/ransac_residual
MAINT: Refactor and speed up silhoutte_score
Merge remote-tracking branch 'upstream/pr/6182'
Merge pull request #6212 from kingjr/fix_kernel_ridge_doc
Merge pull request #6235 from lesteve/fix-reading-of-bunch-pickle-generated-with-0.16
Merge pull request #5794 from rasbt/check_votingclassifier
Merge pull request #6331 from joerobmunoz/fix-model-evaluation-typo
Merge pull request #6384 from yenchenlin1994/fix-broken-link-in-sparse-example
Correct PCA and RandomizedPCA docs related to whitening
Huber regressor
Merge pull request #5291 from MechCoder/huber_loss
Merge pull request #5299 from giorgiop/pca+randomizedpca
Merge pull request #6173 from dsquareindia/featurehasher_fix
MAINT: Simplify n_features_to_select in RFECV
Merge pull request #6221 from dsquareindia/LabelBinarizer_fix
Update whatsnew
Merge pull request #6588 from yenchenlin1994/use-fused-types-in-assign_rows_csr
Merge pull request #6419 from nelson-liu/fix_linkcheck
Merge pull request #6127 from hugobowne/MultiOneVsRestClassifier
Merge pull request #6611 from maniteja123/chebyshev_doc
Merge pull request #6632 from mszep/patch-1
Disable checks in _centers_sparse
Merge pull request #5414 from vighneshbirodkar/el
Remove add_row_csr (#6676)
[MRG + 1] [MAINT] Remove non-trivial logic during kernel initialization (#6963)
Add labels argument to log_loss to provide labels explicitly when number of classes in y_true and y_pred differ
Merge pull request #7252 from lesteve/fix-mock-dataframe-check-array
Merge pull request #7264 from MridulS/kmeansdoc
[MRG+2] Fix repr on isotropic kernels when a 1-D length scale is given (#7259)
[MRG] Fail imputer early when number of features are not the same in fit and transform (#7374)
Merge pull request #6400 from scikit-learn/radneigh-njobs
Manvendra Singh (3):
[MRG + 1] load_iris dataset: added return_X_y option (#7049)
[MRG] load_breast_cancer dataset: added return_X_y option (#7152)
[MRG+1] added return_X_y option to toy datasets in sklearn.datasets (#7154)
Marco De Nadai (1):
Lasso docs fixed (#6880)
Mario Krell (1):
Unify documentation in GMM module
Mark Bao (1):
Doc: spectral.py: Add default value to gamma (#6941)
Mark Szepieniec (1):
Fix grammar bug in docstring of SelectFromModel
Martin Madsen (1):
Typo documentation fixes in Advanced Installation (#6753)
MartinBpr (2):
Corrected macro ROC in example plot_roc
fixed typo in LDA
MaryanMorel (1):
Deprecate residues_ in LinearRegression
Massil (4):
fixed issue #3450 for hamming loss
changed weighting in hamming_loss in sklearn/metrics/classification.py
added test to compare scipy implementation of hamming loss with ours, in sklean/metrics/tests/test_classification.py
deleted a commented line (line 1464 in sklearn/metrics/classification.py)
Matheus (1):
Small fix on ensemble.rst
Mathieu Blondel (4):
Merge pull request #5586 from giorgiop/patch-1
Typo.
Merge pull request #5865 from hlin117/mailmap
Merge pull request #5855 from pieteradejong/doc-edits-transforms
Mathieu Dubois (3):
Use kwargs instead of functools.partial to define some scorers
Smoke test the repr of scorers.
Use items instead of iteritems for python 3 compatibility.
Matteo Visconti di Oleggio Castello (1):
[DOC] fix reference to examples
Matthias Ekman (1):
DOC: fix shape lambda_ attribute in BayesianRidge
Max Moroz (1):
fixed memory / efficiency issue in DummyClassifier(strategy='most_frequent')
Michael Scherer (1):
Fix formatting issue in tree.rst
Mikhail Korobov (2):
fixed error message for invalid class_weight values
use == instead of 'is' for string comparison (#7422)
Moussa Taifi (3):
Fix small typos in docstring and comment (#6840)
Add Brier_score_loss to model validation doc
fix pipeline docs typos (#6940)
Mridul Seth (2):
Add class example for KMeans
Remove dtype conversion warning (#7265)
Naoya Kanai (1):
add load_breast_cancer to API reference (#7149)
Nate George (1):
Fix docs links (#7005)
Nelle Varoquaux (5):
Merge pull request #7063 from samuelstjean/patch-1
Merge pull request #7057 from doshyt/doc-update-confusion
Merge pull request #7033 from nelson-liu/fix_tfidf_intro_to_ir_citation
Merge pull request #7083 from amueller/typos
Merge pull request #7324 from raghavrv/rename_results_
Nelson Liu (40):
replaced matplotlib function finance.quotes_historical_yahoo() (deprecated as of matplotlib 1.4.x) with finance.quotes_historical_yahoo_ochl(), enabling the example to work for the latest version of matplotlib (1.5.0).
edited docstring for clarity regarding the naming of the pipeline components.
edited FAQ to include info about deep learning
doc/fix: edited inaccuracies in nearest centroid classification example
Updated examples and tests that use scipy's lena
enh: reorganize build files
doc: fix capitalization in svm.rst citation to match paper.
DOC: add issue and pull request template
doc: add link to user guide in isolation forest docstring
doc: fix spellings of 'license'
DOC: refactor issue and PR template (#6470)
DOC: fix typo in check_arrays
doc: update mailing list info (#6812)
DOC: fix spelling of Schütze in tfidf citations
DOC: fix typo in sprint title in about (#7043)
[MRG+3] Add mean absolute error splitting criterion to DecisionTreeRegressor (#6667)
[MRG+1] feature: add beta-threshold early stopping for decision tree growth (#6954)
add versionadded for MAE (#7105)
DOC: fix spacing in forest mae versionadded (#7106)
[MRG + 1] add "versionadded" tags to min_impurity_split docstrings (#7093)
doc: fix early stopping indentation in what's new (#7108)
fix indent in whats_new and fix indent in datasets/base.py (#7138)
fix MultiOutputEstimator fit return docstring (#7150)
fix some sphinx warnings in whats_new.rst (#7151)
[MRG] edit citation indentation in about.rst and add gsoc info for '15 '16 (#7191)
clarify splitting sparse data always outputs csr matrix
edit docstring for arrays argument as well
remove accidentally added whitespace
removed versionadded for arrays param and fixed spacing
feature: add tests for sparse matrices
try to fix travis error
be more explicit about purpose of test
Minor doc fixes in pairwise metrics (#7227)
Wrap up changes to fix log_loss bug and clean up log_loss
[MRG + 1] doc: specifically address reinforcement learning in faq (#6479)
[MRG + 1] Rebased navbar fix (#7202)
rename unveil_tree_structure example to enable CI on it
[MRG] Add link to AUTHORS.rst in readme (#7320)
[MRG+1] edited the FAQ to fix a typo and include info regarding global random states (#5927)
DOC add species distributions dataset to classes.rst (#7430)
Nick James (1):
fix for #5725 (makes sure numpy array is not compared to string, which will fail in future versions of numpy)
NickleDave (1):
add directions for contact to AUTHORS.rst
Nico de Vos (1):
added k-modes clustering project
Nicolas Goix (12):
iforest
change doc outlier_detection
plot decision function histogram on bench datasets
binary predict in IsolationForest + test added
cosmit
update doc + bench
add an example + change predict to respect convention
cosmit
fuse benchmarks
cosmit
cosmit
take into account raghav comments
Nikolay Mayorov (26):
BUG: Fixed fetch_kddcup99 for Python 3
ENH: Implemented mutual_info function
DOC: Documentation update related to mutual_info
MAINT: Use six.moves.zip in mutual_info
MAINT: Renamed module mutual_info to mutual_info_
DOC: Example for mutual_information
API: Split mutual_info into _regression and _classif
MAINT: Add blank lines between parameters in mutual_info_.py
MAINT: Add check_classification_targets to mutual_info_classif
TST: Change tolerance checks in test_mutual_info.py
MAINT: Small changes to plot_f_test_vs_mi.py
MAINT: Slightly improve logic of discrete-continuous MI estimation
MAINT: Slightly improve copy logic in _estimate_mi
DOC: Add short descriptions of methods for mutual info estimation
DOC: Add a short explanation of F-test vs MI in narrative doc
BUG: Fix copy logic for mutual info functions
TST: Speed up 2 tests related to mutual info
DOC: Small fixes in mutual_info_.py documentation
MAINT: Small refactoring in mutual_info_.py
MAINT: Get rid of classes in test_mutual_info.py
DOC: Add one more reference for mutual info methods
MAINT: Add a clarification comment in mutual_info_.py
DOC: Modify SelectKBest and SelectPercentile docstrings slightly
MAINT: Mention mutual info methods in whats_new.rst
BUG: Remove non-ASCII symbols from mutual_info_.py
MAINT: Modify whats_new item related to mutual information
Okhlopkov Daniil Olegovich (2):
updated info for cross_val_score
Update copyright year in the doc footer (2015 → 2016)
Olivier Grisel (111):
MAINT switching master to 0.18.dev0
MAINT Use the full listing of the rackspace wheelhouse for appveyor
Merge pull request #5429 from amueller/python33_reload
Merge pull request #5459 from waterponey/circleCI
Merge pull request #5480 from pletelli/gpc_plot
Merge pull request #5319 from nicodv/patch-1
Merge pull request #5436 from Mbompr/plot-roc-example-4976
Merge pull request #5449 from Jeffrey04/5433-MaxAbsScaler-1-row-csr-fix
Merge pull request #5141 from giorgiop/power-iter-randomized-svd
ENH better 'constant' learning rate schedule
Merge pull request #5565 from MechCoder/hot_fix
Merge pull request #5550 from johannah/module-text-colorblind
Merge pull request #5576 from johannah/module-mixture-colorblind
Merge pull request #5577 from waterponey/circleCI_doc
MAINT Cython will soon be a build requirement
Merge pull request #5574 from johannah/module-decomposition-colorblind
MAINT make nosetests verbose output more informative
FIX increase tolerance of class weight check for OS X
Merge pull request #5635 from ogrisel/ogrisel-joblib-0.9.3
MAINT fix the coveralls badge
Merge pull request #6050 from ogrisel/coveralls-tweaks
MAINT fix data home dir in circle.yml
Merge pull request #6084 from ogrisel/rebased-pr-3804
FIX boolean indexing in test_label_kfold
FIX deprecation warning for inspect.getargspec
ENH less verbose output in plot_partial_dependence example
Upgrade joblib to 0.9.4 to fix important bugs
DOC entry for joblib 0.9.4 upgrade
Merge pull request #6179 from ogrisel/joblib-0.9.4
Merge pull request #6201 from GaelVaroquaux/more_ledoit_wold_tests
Merge pull request #6230 from yenchenlin1994/fix-Hierarchical-parameter-doc
Merge pull request #6238 from amlankar/patch-1
Merge pull request #6218 from mth4saurabh/update-input-data-note-clustering-docs
TST non-regression test for #6147, roc_auc on memmap data
FIX 6147: ensure that AUC is always a float
DOC add fix for #6147 to the changelog
DOC missing changelog entry for #5857
Merge pull request #6241 from louridas/fix-iris-decision-tree
Merge pull request #5701 from ziky90/gp-comparison-fixes
Merge pull request #6277 from rasbt/latendDAupdate
Merge pull request #6264 from yenchenlin1994/fix-multioutput-regression-tree-example
Merge pull request #6232 from maniteja123/fetch_20newsgroups
FIX restore previous title layout in examples/tree/plot_iris.py
Merge pull request #6267 from yenchenlin1994/fix-LDA-doc-error
Merge pull request #6286 from ogrisel/pr-6206-followup
Merge pull request #6270 from ogrisel/pr-5711-followup
FIX performance issue in _graph_connected_component
Merge pull request #6268 from ogrisel/fix-spectral-embedding-stopping-condition
MAINT display pip version in appveyor
MAING Upgrade pip in appveyor
Merge pull request #6299 from ogrisel/fix-appveyor-pip
MAINT split test_ridge.test_dense_sparse with generator
STYLE missing whitespace in isomap comment
MAINT speed up slow test_iforest_sparse
Merge pull request #6324 from chyikwei/fix-lda-joblib-error
DOC whats_new entry for #6258
Merge pull request #6040 from amueller/circle_texlive
MAINT clean up install script
MAINT more informative output to circle/check_build_doc.py
FIX check_build_doc.py false positive detections
Merge pull request #6363 from ogrisel/pr-6332-followup
Merge pull request #6254 from rvraghav93/cythonize_when_pxd_changes
Merge pull request #6508 from lesteve/travis-nomkl
MAINT bump up numpy and scipy versions for travis latest
Merge pull request #6494 from ogrisel/fix-travis-conda-numpy
[MRG] Fix strict tests
FIX assert_array_almost_equal in test_image
Merge pull request #6636 from ogrisel/fix-strict-tests-2
Merge pull request #6664 from yenchenlin1994/make-cython-compiler-directives-global
Merge pull request #6666 from tguillemot/GSoC-GMM-new
STYLE minor flake8 fixes in nmf.py
STYLE use one-liner
DOC do not mention private class in changelog
FIX SquaredHinge is a classification loss (#6771)
FIX workaround bug in numpy 1.9 (#6856)
Joblib 0.10.0 (#6985)
TST make test_forest robust to platform variability
FIX broken NMF test with numpy 1.7.1
STYLE trailing whitespace
FIX broken iforest test under numpy 1.7.1
FIX broken test when run with arch -i386 on OSX
FIX make HuberRegressor tests stable under 32 bit Linux (#7196)
DOC reference CalibratedClassifierCV in SGDClassifier.predict_proba (#7281)
[MRG] identity activation function for MLPs (#7267)
[MRG] Update joblib to 0.10.2 (#7290)
ENH make validation message easier to understand (#7294)
FIX #7293: StandardScaler.with_mean in preprocessing doc
Merge pull request #7216 from b0noI/master
Merge pull request #7316 from totalgood/doc-clf-reg-patch
Merge pull request #7317 from amueller/common_test_names
Merge pull request #7342 from themrmax/pydotplus-decision-tree-plotting
DOC fix iterated_power='auto' in doctests
Merge pull request #7304 from jnothman/binary_prf_mine
Add Dirichlet process prior to BayesianGaussianMixture (#7386)
DOC fix for svd_solver in PCA docstring
DOC fix class.rst for Label / Group CV tools
ENH more informative validation error message
Merge pull request #7393 from ogrisel/mlp-multilabel
ENH rename l-bfgs to lbfgs in MLP for the sake of consistency
ENH rename algorithm to solver in MLP for consistency
Merge pull request #7309 from amueller/how_to_ask_questions
Merge pull request #7396 from ogrisel/mlp-optimizer
Merge pull request #7401 from ogrisel/sgdclf-predict_proba-delegation
DOC add what's new entry for #7159
Merge pull request #7404 from amueller/capitalization_rebase
Release 0.18rc
Release 0.18rc1
FIX use == to avoid relying on string interning
FIX missing import in setup.py
Release 0.18rc2
[MRG+2] Faster isotonic rebased (#7444)
Panos Louridas (2):
remove shuffling and standardization fix layout
move title in the bottom
Paul Strickland (1):
Correct typo in ``decomposition.rst``. Merge latest changes.
Perrine Letellier (2):
fontsize legend parameter is not available for matplotlib < 1.3
colorbar doesn't handle label parameter
Peter Fischer (6):
Bug fix for unnormalized laplacian
Update whats_new.rst
Bug fix for unnormalized laplacian
Update whats_new.rst
Initialize ARPACK eigsh
Update test_utils.py
Pieter de Jong (1):
minor grammatical fix
Ping-Yao, Chang (1):
Add description about default score_func
Preston Parry (9):
removes extra spaces from error message
DOC clarifies that sparse matrices are scipy
[DOC] Moves comma to make sentence more clear
DOC Minor grammar fix (#6925)
Minor grammar fix
minor wording fix
Minor docstring clarification (#6926)
DOC Updates sklearn naming convention for consistency (#7268)
[DOC] Capitalizes "C/C++" from "c/c++" (#7273)
Qimu Zheng (1):
Fix bug in mini batch kmeans example
Rachit Kansal (1):
Tweaking the legend of GP plot in plot_compare_gpr_krr.py
Raghav R V (36):
FIX precision to float64 across the codebase
MAINT remove deprecated stuff that will no longer be supported in 0.18
MAINT move custom error/warning classes into sklearn.exceptions
DOC/SPHINX Add template for classes which don't have init (Exception classes)
MAINT Deprecated the UndefinedMetricWarning at sklearn.metrics.base
MAINT move deprecated into deprecation.py
FIX/ENH Make the moved class resilient to the deprecation patching
DOC Add description for UndefinedMetricWarning
MAINT Remove deprecated stuff that will be removed in 0.18
Main Commits - Major
FIX inspect.argspect is deprecated; use signature
DOC Modify documentation/examples for the new model_selection module
DOC Add the learning curve documentation to model_selection.rst
MNT 0.19 --> 0.20; As the model_selection changes will be released in 0.18 only
FIX Explicitly specify the plot colors for each curve
DOC Reworded cv documentation
Leading underscores for warnings imported from sklearn.exceptions
ENH Add sample weight support to matthews_corrcoef metric
ENH/FIX std error is computed for mean across a set of 3 scores, not len(X)
TST/FIX Make model selection tests warning free!
FIX/NRT signature expects the init to not be a c-defined method (Py2.7)
ENH/MAINT Check for changes in pxd files too. Cleanup code
ENH/MAINT Save hashes once for every file
FIX use the model_selection
ENH move the raise statement alone inside a gil block (#6644)
DOC Make the PR/Issue headers smaller (#6685)
FIX Don't warn when scoring param is passed + PEP8 (#6798)
[MRG] ENH Restructure grid_scores_ into a dict of 1D arrays
CI Install psutil (#6897)
MNT use model_selection (#7082)
[MRG] MAINT Removing more deprecated stuff for v0.18 (#5528)
ENH Better error message when refit=True. (#7234)
results_ --> cv_results_; "test_mean_score" --> "mean_test_score" et al.
[MRG+1] ENH/MNT Rename labels --> groups in CV tools (#6660)
MNT Remove unused constants from public API(?) (#6517)
[MRG+1] TST Stronger test for _check_is_permutation (#7395)
Ralf Gommers (1):
BLD: fix build issue introduced by gh-5492.
Ramana.S (2):
Add missing pairwise metrics to classes.rst
doc:added multilabel y support for all splitters
Rammig (1):
[MRG+1] Added text and logo for ottogroup testimonial (#6802)
Randy Olson (2):
Add Python and PyPi version badges
Add TPOT to related projects (#6732)
Rob Alexander (1):
Corrected typos in cross_validation.KFold docstring
Rob Hall (1):
added contributors to whats new for 0.16 and 0.17 (#5840)
Robert Lutz (1):
[MRG+1] Fix: Replace pylab with matplotlib.pyplot #6754 (#6762)
Robin Schucker (1):
Fixed doc for issue #7409 (#7410)
Rohan Jain (1):
DOC Fix text data tutorial (#6923)
Roman Yurchak (1):
[MRG] Text vectorizers memory usage improvement (#7272)
Ruifeng Zheng (2):
[MRG+3] Add weighting option to cohen_kappa_score
[MRG+1] Add hyperlink and example for kappa (#7214)
Russell Smith (1):
Add OneVs{One,All}Classifier._pairwise: fix for #7306 (#7350)
Ryan Yu (2):
Update tree.rst (#6826)
fix a typo in ridge.py (#6917)
Rémy Léone (14):
List creation could be litteral
Dictionary creation could be rewritten as litteral
Chained compararisons can be simplified
remove useless pass
Redirecting to open issues
Default mutable argument
Useless trailing semicolon
Simplify chain comparaison
Migrate examples to avoid deprecated module
Remove cython warnings
dict.has_key() deprecated
MAINT Use with to handle file
Inconsistent indentation
[DOC] Fix broken links
Saiwing Yeung (3):
Merge remote-tracking branch 'scikit-learn/master'
DOC: fixed typos and one style issue in plot examples
FIX does not draw the ellipse! #6640 (#6757)
Sam Shleifer (1):
DummyClassifier and DummyRegressor should raise NotFittedError (#7069)
Samuel St-Jean (3):
Doc: Fix typo (#6854)
DOC: fix typo (#7044)
DOC: fix typo
Sartaj Singh (1):
update file header in affinity_propagation.py
Sasank Chilamkurthy (1):
NMF Bug fix when init='custom'
Scott Andrews (1):
Fixed issue #5830, capitalization in advanced installation documenation
Scott Lowe (2):
DOC: Align the code blocks in CONTRIBUTING.md with tab
MAINT: Fix typo in comment for travis/install.sh
Sebastian Raschka (6):
added LatentDA to the Incremental learning page
raise NotFittedError in VotingClassifier and unit test improvements
rename function to func (#6700)
remove redundant NotFittedError import from voting classifier (#7060)
[MRG] extending tfidf documentation (#7015)
update setup.py PyPI trove classifier section (#7197)
Sebastian Saeger (1):
Fixes the 'make cython' by adjusting the path to cythonize.py
Sebastián Vanrell (1):
Doc minor fix ensemble.rst (#7186)
Sergei Lebedev (1):
BUG fixed a typo in ``sklearn.gmm`` (#7182)
Shashank Shekhar (1):
Added user guide link in function_tranformer docstring (#5785)
Shota (1):
Fix typos (#6942)
Skipper Seabold (1):
DOC: Fix spelling
SmedbergM (1):
Read web pages as UTF-8 by default. Use with-blocks to open files.
Steven C. Howell (2):
fix typo in DBSCAN explanation
remove unnecessary comma
Sébastien Lerique (1):
[MRG] fix documentation typo
Taranjeet (1):
grammatical fix in tutorial.rst under basic category
Thierry (2):
Integration of the new GaussianMixture class.
Modification of the ignore_warning function and _IgnoreWarning class.
Thierry Guillemot (10):
Correct the deprecation of the random_integers numpy function. (#6712)
Modification of the GaussianMixture class to use cholesky precision matrices. (#6743)
Modification of the GaussianMixture class. (#6824)
Change GMM -> GaussianMixture. (#6886)
[MRG] ENH Add Calinsky-Harabaz and Fowkes-Mallows clustering metrics (#6823)
Correct Deprecation of DPGMM and VBGMM. (#7124)
[MRG+1] Dpgmm alpha (#7028)
[MRG+2] Modification of GaussianMixture class. (#7123)
Fix -np.infty in GaussianMixture. (#7180)
[MRG+1] Bayesian Gaussian Mixture (Integration of GSoC2015 -- second step) (#6651)
Thomas A Caswell (1):
DOC: mark weights as optional
Thomas Hallock (2):
s/labe/label
corrected typo
Thomas Moreau (8):
- Add max_n_classes param to cluster.supervised metric
Reduce test time.
Correct Typo with Gael comment
Improve travis config file (for :#5455)
Add test before miniconda download
WIP commit - add ls and print
Test caching strategy for travis
Remove testvenv from cache
Tim Head (29):
English language changes to IsolationForest documentation
The docs have moved
Calculate max_depth when max_samples is known
Fix docs and remove duplicated checks
Comment on weird initialisation for scoping reasons
Test for max_depth calculation and re-adding max_samples_ property
Test max_samples_ attribute, set max_depth in BaseBagging
Fix doc string and number vs string ordering
Reference correct variable
Use six to detect integral numbers
base_estimator_ attribute is a single estimator not a list
Multitarget regression meta estimator
What's new?
[MRG] Check for NaN or Inf in metric input (#6976)
Rename smaller-is-better scoring metrics
Update tests to new scorer names
Introduce deprecation warning and fix tests
Keep old metric names for deprecation period
Keep old metric names in tests
Do not show deprecated scorers in list of valid names
Do not remove log_loss scorer during deprecation period
Distinguish instances from functions in deprecated
Go back to warning all callers
Remove unused import
Link to mean_squared_error function
Small documentation fix
Keep abstractmethod decorator
Update examples to new scorer names
Test that warning is raised when using deprecated scorer
Tom Dupré la Tour (34):
Merge pull request #5733 from giorgiop/trevis-with-timer
Merge pull request #5850 from JeremyNixon/jeremy-feature
Merge pull request #5892 from mth4saurabh/add-user-guide-link-to-lda
Merge pull request #5882 from LeiG/fix_confusing_n_samples
Merge pull request #5919 from nelson-liu/fix_stock_example
Merge pull request #5944 from nelson-liu/fix_make_pipeline_doc
Merge pull request #5923 from fabioticconi/add_link
Merge pull request #5800 from fabioticconi/patch-1
Merge pull request #5852 from nickyj88/master
Merge pull request #5730 from hdmetor/bugfix/5720
Merge pull request #6036 from kputnam/patch-1
DOC add version_added for multinomial sag
Merge pull request #6102 from toastedcornflakes/denoising_doc_fix
Merge pull request #6146 from toastedcornflakes/MLP_fix
DOC add jmetzen and tomdlt to authors.rst
Merge pull request #6314 from tshauck/remove-superfluous-declaration
Merge pull request #6319 from gjreda/fix-soft-voting-docs
Merge pull request #6328 from rvraghav93/model_selection_repr_fix
Merge pull request #6333 from lesteve/fix-test-label-binarizer-on-windows
Merge pull request #6414 from ssaeger/issue_6413
Merge pull request #6461 from scottclowe/fix-typo
Merge pull request #6462 from scottclowe/doc-align-contrubting-code-indents
Merge pull request #6371 from yenchenlin1994/add-test-for-vote-classifier
Merge pull request #6521 from giorgiop/patch-2
DOC update docstring in LogisticRegression
Merge pull request #6579 from nlathia/issue-6541
Merge pull request #6569 from MechCoder/minor
Merge pull request #6395 from yenchenlin1994/make-dump_svmlight_file-support-sparse-y
Merge pull request #6376 from tracer0tong/issue_6352
DOC add reference to multinomial logistic example
change last pl to plt
use class_weight through sample_weight in LogisticRegression with liblinear
[MRG+2] convert to boolean arrays for boolean distances (#6932)
DOC fix various syntax in whats_new (#7421)
TomDLT (5):
FIX class_weight in LogisticRegression and LogisticRegressionCV
update whats_new for #5008
FIX decrease tolerance in test_logistic for appveyor failure
add .tags in gitignore
ENH add multinomial SAG solver for LogisticRegression
Toshihiro Kamishima (2):
type checking before comparison, to avoid warning messages
type echecking before comparison, to avoid warning of multiple comparison (#6615)
Trent Hauck (1):
Removes X= after raise.
Tue Vo (1):
[DOC] update and rename readme to readme.md (#6669)
Varun (3):
BUG :#5782 check_classification_targets returns y instead of y_type
#5782 added test case for check_classification_targets()
added check for type in test_check_classification_targets
Varun Jewalikar (1):
Typo
Viacheslav V Kovalevskyi (7):
Merge branch 'master' of https://github.com/b0noI/scikit-learn
"values" has been changed ot the "value" in the ValueError message.
Text of the ValueError in _check_param_grid has been changed.
Tests that are checking that _grid_search method throws correct ValueError have been added.
Test method test_grid_search_incorrect_param_grid has been renamed to test_grid_search_param_grid_includes_sequence_of_a_zero_length.
MockClassifier has been added to the _grid_search tests.
Lines over 81 chracter length got reformatted.
Vighnesh Birodkar (8):
Removed exit() call in topic extraction example
change default order in check_array and update variable names in _k_means_elkan.pyx
docstring elaboration and typo in fixes.py
doc typo
fixed doc formatting
Revert definition of check_array
revert doc string of check_array
make centers C contig
Vikram (1):
update for issue #6523 (add logistic_regression_path to classes.rst (#6970)
Villu Ruusmann (3):
Added a related PMML serialization project
Distinguished more clearly between two PMML serialization projects
Explained implementation details
Vinayak Mehta (1):
Replaced fontsize legend parameter
Wenhua Yang (1):
FIX incorrect gradient computation for SquaredEpsilonInsensitive loss
Wenjian Huang (1):
Update text.py
Will Welch (1):
added warm_start flag to example
Yaroslav Halchenko (8):
DOC: few minor typos spotted
DOC: very minor typo
Merge tag '0.18' into releases
Merge branch 'releases' into dfsg
Merge branch 'dfsg' into debian
changelog + dropped changesets
refreshed patches
a little patch for PY3_OR_LATER import
Yen (12):
[MRG+2] Use fused types in sparse mean variance functions (#6593)
[MRG] Allows KMeans/MiniBatchKMeans to use float32 internally by using cython fused types (#6846)
COSMIT Reduce duplicated code (#7053)
Fix typo (#7145)
DOC Add LabelKFold in _BaseKFold's docstring (#6344)
[MRG] Make Silhouette_score support sparse X (#7170)
[MRG] Add whats_new about fixing example (#7184)
[MRG+1] Rename CV params n_{folds,iter} to n_splits (#7187)
[MRG] Add homogeneous time series cross validation (#6586)
[MRG+2] ElasticNet and Lasso now support float32 dtype input (#6913)
Rename `TimeSeriesCV` to `TimeSeriesSplit` (#7245)
[MRG+2] Make `enet_coordinate_descent_gram` support fused types (#7218)
YenChenLin (23):
Make doc for parameter consistent
Fix axis label of multioutput regression tree example
Fix typo in parameter's doc
Add doc to clarify the use of DictVectorizer when categorical features are represented as numeric values
Fix check_cv error message
Remove redundant and
Normalize LDA transform's return value
Remove redundant that in test_ranking.py
Remove redundant assignment of parameter shuffle
Add test for init errors
Fix broken link of Wainwright's paper
Remove redundant assignment of variable tol
Add test for local linear embedding
Remove redundant words in sklearn
Fix misuse of it's
Add doc of attributes for VotingClassifier
Make dump_svmlight_file support sparse y
Make assign_rows_csr support Cython fused types
Use fused type in inplace normalize
Test normalize function in data.py
Make cython compiler directives global
Make csr_row_norms support fused types
Test row_norms for float32 data
Yichuan Liu (1):
FIX 7155: GridSearchCV predict_proba delegation to SDGClassifier
Yoav Ram (1):
emphasis on "higher return values are better..." (#6909)
Yoshiki Vázquez Baeza (1):
DOC: Add defaults for oob_score in docstrings
Zheng RuiFeng (1):
GaussianNB now support sample weighting
Zikes, Jan (2):
Fixed string comparison on arrays in new Gaussian process described in issue #5663
shortened if condition based on glouppe's suggestion
alexfields (1):
Add link to multiisotonic
alyssaq (1):
Fixed legend text and pep8 warnings
andrew giessel (1):
DOC: clarify inputs for haversine metric
b0noI (3):
ValueError that is thrown by _check_param_grid method now includes parameters name when values of a parameter have incorrect type.
ValueError that is thrown by _check_param_grid method now includes parameters name when values of a parameter have incorrect type.
[MRG+1] Support of the collections.Sequence type has been added to the _check_param_grid method from model_selection. (#7323)
blakeflei (1):
[MRG + 1] update test_common.py deprecation warning (#7024)
codevig (1):
add docs
definitelyuncertain (1):
Explicit warnings in model persistence documentation (#7157)
djipey (4):
Attribute explained_variance ratio is now available for LDA with the SVD
Corrected the dimension of the array explained_variance_ratio_ for LDA,
Cleaned the calculation of explained_variance_ratio_ in
Regression test for explained_variance_ratio_, LDA, SVD solver.
dsquareindia (13):
FIX Eliminated the use of color_cycle in out of core example
Fixed the broken nose link in advanced installation docs.
Fixed doc in lfw.py.
Addressed comments
SKF raises error if n_labels<n_folds for individual classes. Updated whats_new
Added link to profile in whats_new.rst
LabelEncoder now raises error for 0-D arrays
FIX in randomized_svd flip sign
DOC: Fix redundant doc for f_regression.
DOC: Added memory workaround to dbscan doc
Made seperate topic for mem consumption for large sample sizes
ENH: FeatureHasher now accepts string values.
LabelBinarizer single label case now works for sparse and dense case
edwinENSAE (1):
Change comment formula of enet_coordinate_descent_gram
elena-sharova (1):
Provided a fix for issue #7140 - Minor discrepancy in hashing feature
fisache (1):
Fix minor typo
ghg (1):
fixed log_loss bug
govin-vatsan (1):
Changes to be committed:
halwai (1):
Rewordin algorithm requirements in FAQ
hashcode55 (3):
first commit
changed binary average back to macro
changed binomialNB to multinomialNB
hdmetor (1):
Using rain_test_split and StandardScaler instead of reimplementing them
jackmartin (2):
Fixed pep8 errors
pep8
jarfa (2):
much faster isotonic regression prediction (involved re-setting interpolation to linear)
change to test_isotonic_regression_ties_min
jblackburne (1):
Removed isclose from _binary_clf_curve. (#7353)
jeff levesque (1):
#6609: related_projects.rst, one commit - @rvraghav93, @jnothman
jeremynixon (1):
update ambiguous out of bag generalization terminology - from 'error' to 'accuracy' or 'the R^2...'.
johannah (11):
Added colorblind compatibility to classification
Added colorblind compatibility
Added colorblind compatibility
Changed from plot to scatter for consistency
added colorblind compatibility
Made plots colorblind friendly
Added colorblind compatibility
Added colorblind capability
Added colorblind compatibility
Added colorblind compatibility
Added colorblind compatibility
jonathan.striebel (1):
documentation: fixing typo (#6938)
joncrall (1):
Fixed libsvm call with unicode kernel.
jrfiedler (3):
Added deprecation cycle and modified examples (#7013)
DOC Reword description to remove ambiguity (#7066)
Modify v0.18 DeprecationWarning messages (#7067)
juliathebrave (1):
[MRG +1] adds DeprecationWarning to DPGMM and VBGMM (#7020)
kaichogami (5):
Added partial_fit method for ovo and ovr
Added doc, tests
Removed joblib comment, made compatible for python3
Changed izip import statement, importing from six moudle
Made few tweaks based on commemnts
kingjr (1):
FIX: doc KernelRidge
kjell (2):
residual sum of squares should be computed by summing the squared differences instead of taking the mean.
change comment, printed comment, and code behavior to all reflect computation of mean squared error
krishnakalyan3 (3):
fix balance
fix Indentation and redundant info
fix Indentation and redundant info
ldavid (1):
Add parallelism to multiple algorithms
lizsz (1):
Update scorer.py
michiaki ariga (1):
Remove extra `+` in document
mlliou112 (1):
DOC: Added Nested Cross Validation Example (#7111)
mrandrewandrade (1):
fixed target link to isotonic regression example
nadya-p (1):
[MRG+1] Parameter check in NMF and IsolationForest (#6814)
ningchi (2):
[MRG] #6581 n_samples of utils.resample can be more when replace is True
[MRG+1] issue #6532 Add `inverse_transform` function (#6570)
nlathia (1):
Fix typo in html target
okbalefthanded (1):
Update OAS estimator description (#6758)
pestrickland (2):
Minor grammar fix.
Removed duplicate word and corrected grammar in decomposition documentation.
practicalswift (1):
[gardening] Fix NameError ("estimator" not defined). Remove unused var "ind".
rasbt (1):
typo fixes in the current changelog
root (1):
Change shape of target in fetch_lfw_pairs docstring to 2200 for consistence with data and pairs shape
saihttam (1):
[MRG+1] Fix for test_neighbors_metrics() check kd-tree algorithm when possible (#7339)
saurabh.bansod (6):
Add MLP to what's new
Add user guide link to lda
add warning, new images and links in MLP docs
update url of ARD reference
minor fix in RandomizedLasso API docs
update note on Input Data in clustring docs
seales (2):
Fix Kernel PCA docstring to reflect how remove_zero_eig defaults to false
General spelling fixes
shagun Sodhani (1):
proposed fix for #5387
shanmuga cv (1):
[MRG+1] Bug fix for OneVsOneClassifier - converted input to numpy array (#6626)
shawpan (2):
Fixed user guide link in ransac.py #5621
added warning tests for test_roc_curve method
shengxiduan (1):
adding user guide link to LinearDiscriminantAnalysis issue #6829 (#7031)
shuckle16 (1):
small grammar fix
sklearn-ci (1):
Adding shield for circleCI in README
srvanrell (1):
classes parameter renamed to labels in hamming_loss()
tKammy (1):
fixed typo
themrmax (3):
change decision tree example to use pydotplus for compatibility with Python 3
make export_graphviz return string if out_file is None
MAINT remove unneeded import (#7465)
toastedcornflakes (3):
minor grammatical fix
Remove useless normalization — fixes #6075
Fix hyperparameter check error
tracer0tong (2):
Fix for issue #6352
Fixed codestyle
trevorstephens (4):
fix rounding, adjust tests for 32 bit export_graphviz
OneHotEncoder warn fix
fix for missing classes found in y #4327
fix pplot example for uneven grids
walter (1):
Fix grammar in rbm docstring
waterponey (3):
fix #4986 doc building on master with circleCI
Pushing doc to github.io
adding sklearn data home
wyseguy7 (1):
Updated README, removed git clone with write reference (#7009)
xyguo (2):
Fixing default order docs of sklearn.utils.check_array
add doctest extension (#6774)
yanlend (11):
- test for unnormalized Laplacian computation
correct comments
Merge branch 'master' of https://github.com/scikit-learn/scikit-learn into patch-1
- removed incorrectly commited file
- test for unnormalized Laplacian computation
correct comments
- removed incorrectly commited file
Revert "- removed incorrectly commited file"
Merge branch 'patch-1' of https://github.com/yanlend/scikit-learn into patch-1
Merge branch 'master' of https://github.com/scikit-learn/scikit-learn into patch-1
fix docs and doctests for KernelPCA
yelite (1):
In tree, min_samples_split and min_samples_leaf now accept float number as percentage.
zivori (1):
model_seclection._validation.cross_val_predict_apply_func
Óscar Nájera (16):
[MAINT] Install sphinx-gallery v0.1.0
conf.py integrate sphinx-gallery
update image sources namespace
update references link namespace
update reference namespace in gallery scripts
Add carousel
References to examples
more examples references
[MAINT] Update to sphinx-gallery v0.1.1
[MAINT] update to sphinx-gallery v0.1.2
Remove custom touch to backreferences files
Sphinx-Gallery has to be loaded after autodoc
Python 2 backwards compatibility in example
Fix example to use rst syntax in notebook comments
Extra missing links complained by sphinx
Sphinx-doc absolute path for auto_example images
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