[r-base] 02/04: Imported Upstream version 3.3.1
Johannes Ranke
jranke-guest at moszumanska.debian.org
Fri Jul 1 13:36:56 UTC 2016
This is an automated email from the git hooks/post-receive script.
jranke-guest pushed a commit to branch debian/jessie-backports
in repository r-base.
commit f2bf3dd03d1b11fe1722b724aef5ce3483c0f298
Author: Johannes Ranke <jranke at uni-bremen.de>
Date: Thu Jun 30 10:17:01 2016 +0200
Imported Upstream version 3.3.1
---
SVN-REVISION | 4 +-
VERSION | 2 +-
VERSION-NICK | 2 +-
configure | 18 +-
debian/R-2.5.0.patch | 149 -
debian/R.bash-completion | 499 --
debian/README.Atlas | 186 -
debian/README.debian | 13 -
debian/README.mathlib | 89 -
debian/Renviron-R_LIBS.patch | 14 -
debian/Renviron.site | 19 -
debian/Rprofile.site | 23 -
debian/arm-perl-regexp.patch | 31 -
debian/build-help.pl | 27 -
debian/build-help.pl.patch | 38 -
debian/changelog | 3540 ---------
debian/compat | 1 -
debian/control | 375 -
debian/copyright | 660 --
debian/icon-class-patch/R.desktop | 10 -
debian/icon-class-patch/philip_johnson_email.txt | 149 -
debian/icon-class-patch/r_icon_class.patch | 95 -
debian/icon-class-patch/rlogo_icon.png.mpack | 99 -
debian/javareconf.patch | 18 -
debian/libR.conf | 2 -
debian/override-bz2-version-check.patch | 22 -
debian/papersize.sh | 19 -
debian/r-base-core-dbg.dirs | 1 -
debian/r-base-core-dbg.lintian | 2 -
debian/r-base-core.bash-completion | 1 -
debian/r-base-core.dirs | 12 -
debian/r-base-core.files | 3 -
debian/r-base-core.lintian | 109 -
debian/r-base-core.menu | 5 -
debian/r-base-core.postinst | 65 -
debian/r-base-core.preinst | 34 -
debian/r-base-core.prerm | 26 -
debian/r-base-core.shlibs.hidden | 1 -
debian/r-base-dev.dirs | 1 -
debian/r-base-dev.links | 1 -
debian/r-base-dev.preinst | 26 -
debian/r-base-html.files | 1 -
debian/r-base-latex.dirs | 1 -
debian/r-base-latex.files | 1 -
debian/r-base-latex.lintian | 1 -
debian/r-cran.mk | 147 -
debian/r-doc-html.doc-base.admin | 9 -
debian/r-doc-html.doc-base.data | 9 -
debian/r-doc-html.doc-base.exts | 11 -
debian/r-doc-html.doc-base.faq | 10 -
debian/r-doc-html.doc-base.intro | 17 -
debian/r-doc-html.doc-base.ints | 10 -
debian/r-doc-html.doc-base.lang | 11 -
debian/r-doc-html.files | 1 -
debian/r-doc-html.links | 7 -
debian/r-doc-html.links.hidden | 1 -
debian/r-doc-html.preinst | 32 -
debian/r-doc-info.files | 1 -
debian/r-doc-pdf.files | 1 -
debian/r-doc-pdf.links | 10 -
debian/r-doc-pdf.links.hidden | 1 -
debian/r-doc-pdf.preinst | 26 -
debian/r-gnome.NEWS | 13 -
debian/r-gnome.links | 1 -
debian/r-gnome.lintian | 1 -
debian/r-gnome.menu | 4 -
debian/r-gnome.preinst | 26 -
debian/r-mathlib.dirs | 1 -
debian/r-mathlib.files | 3 -
debian/r-mathlib.links.hidden | 1 -
debian/r-mathlib.lintian | 4 -
debian/r-mathlib.postinst | 27 -
debian/r-mathlib.shlibs.hidden | 1 -
debian/r-recommended.dirs | 2 -
debian/r-recommended.files | 14 -
debian/r-recommended.links | 1 -
debian/r-recommended.lintian | 8 -
debian/r-recommended.preinst | 26 -
.../R-set-buildstamp-via-INSTALL.patch | 63 -
.../R-set-buildstamp-via-MAKE-env-var.patch | 32 -
debian/rules | 741 --
debian/rules,v | 758 --
debian/shlibs.local | 2 -
debian/shlibs.local.hidden | 1 -
debian/simulate-buildd | 10 -
debian/source/format | 1 -
debian/unused/Renviron-R_PAPERSIZE.patch | 12 -
debian/unused/control.r-gnome | 27 -
debian/unused/makeLazyLoad.R.patch | 79 -
debian/unused/r-gnome.links | 1 -
debian/unused/r-gnome.lintian | 1 -
debian/unused/r-gnome.menu | 4 -
debian/unused/r-gnome.preinst | 26 -
debian/updated_x11_logo.patch | 7692 --------------------
debian/watch | 5 -
doc/FAQ | 4 +-
doc/NEWS | 40 +
doc/NEWS.Rd | 53 +-
doc/NEWS.pdf | Bin 423988 -> 426159 bytes
doc/html/NEWS.html | 64 +
doc/html/R-admin.html | 100 +-
doc/manual/R-FAQ.texi | 4 +-
doc/manual/R-admin.texi | 28 +-
doc/manual/R-intro.texi | 16 +-
doc/manual/R-ints.texi | 36 +-
share/texmf/bibtex/bib/RJournal.bib | 78 +
src/gnuwin32/cran/rdevel.in | 9 +-
src/include/R.h | 2 +-
src/library/Recommended/KernSmooth_2.23-15.tar.gz | Bin 24572 -> 24572 bytes
src/library/Recommended/MASS_7.3-45.tar.gz | Bin 487268 -> 487268 bytes
src/library/Recommended/boot_1.3-18.tar.gz | Bin 231830 -> 231831 bytes
src/library/Recommended/class_7.3-14.tar.gz | Bin 19726 -> 19726 bytes
src/library/Recommended/nlme.tgz | 2 +-
src/library/Recommended/nlme_3.1-127.tar.gz | Bin 776625 -> 0 bytes
src/library/Recommended/nlme_3.1-128.tar.gz | Bin 0 -> 778999 bytes
src/library/Recommended/nnet_7.3-12.tar.gz | Bin 28523 -> 28521 bytes
src/library/Recommended/rpart_4.1-10.tar.gz | Bin 818525 -> 818520 bytes
src/library/Recommended/spatial_7.3-11.tar.gz | Bin 44664 -> 44666 bytes
src/library/Recommended/survival.tgz | 2 +-
src/library/Recommended/survival_2.39-2.tar.gz | Bin 5015076 -> 0 bytes
src/library/Recommended/survival_2.39-4.tar.gz | Bin 0 -> 5033647 bytes
src/library/base/R/datetime.R | 5 +
src/library/base/R/factor.R | 3 +-
src/library/base/R/format.R | 7 +-
src/library/base/R/namespace.R | 4 +-
src/library/base/R/windows/system.R | 5 +-
src/library/base/man/Platform.Rd | 6 +-
src/library/base/man/assign.Rd | 4 +-
src/library/base/man/assignOps.Rd | 11 +-
src/library/base/man/bindenv.Rd | 4 +-
src/library/base/man/difftime.Rd | 12 +-
src/library/base/man/files.Rd | 13 +-
src/library/base/man/locales.Rd | 6 +-
src/library/base/man/merge.Rd | 8 +-
src/library/base/man/ns-load.Rd | 9 +-
src/library/base/man/raw.Rd | 9 +-
src/library/base/man/sink.Rd | 11 +-
src/library/base/man/weekday.POSIXt.Rd | 5 +-
src/library/base/man/withVisible.Rd | 6 +-
src/library/datasets/man/Nile.Rd | 6 +-
src/library/grDevices/R/prettyDate.R | 11 +-
src/library/grDevices/tests/ps-tests.Rout.save | 4 +-
src/library/grDevices/tests/xfig-tests.Rout.save | 4 +-
src/library/graphics/R/text.R | 7 +-
src/library/graphics/man/legend.Rd | 5 +-
src/library/graphics/man/text.Rd | 4 +-
src/library/grid/inst/doc/displaylist.pdf | Bin 157081 -> 157013 bytes
src/library/grid/inst/doc/frame.pdf | Bin 155673 -> 155617 bytes
src/library/grid/inst/doc/grid.pdf | Bin 251516 -> 251586 bytes
src/library/grid/inst/doc/grobs.pdf | Bin 106861 -> 106784 bytes
src/library/grid/inst/doc/interactive.pdf | Bin 90560 -> 90490 bytes
src/library/grid/inst/doc/locndimn.pdf | Bin 89208 -> 89146 bytes
src/library/grid/inst/doc/moveline.pdf | Bin 86954 -> 86880 bytes
src/library/grid/inst/doc/nonfinite.pdf | Bin 79199 -> 79127 bytes
src/library/grid/inst/doc/plotexample.pdf | Bin 223636 -> 223699 bytes
src/library/grid/inst/doc/rotated.pdf | Bin 121541 -> 121455 bytes
src/library/grid/inst/doc/saveload.pdf | Bin 133573 -> 133501 bytes
src/library/grid/inst/doc/sharing.pdf | Bin 70524 -> 70446 bytes
src/library/grid/inst/doc/viewports.pdf | Bin 162721 -> 162672 bytes
src/library/grid/tests/testls.Rout.save | 4 +-
src/library/methods/man/setClass.Rd | 47 +-
src/library/methods/tests/testIs.R | 9 +
src/library/parallel/inst/doc/parallel.pdf | Bin 291612 -> 291231 bytes
src/library/parallel/tests/multicore2.Rout.save | 4 +-
src/library/parallel/tests/snow2.Rout.save | 4 +-
src/library/stats/COPYRIGHTS.modreg | 2 +-
src/library/stats/R/runmed.R | 4 +-
src/library/stats/man/dendrogram.Rd | 9 +-
src/library/stats/man/deriv.Rd | 10 +-
src/library/stats/man/median.Rd | 6 +-
src/library/stats/man/model.matrix.Rd | 10 +-
src/library/stats/man/relevel.Rd | 13 +-
src/library/stats/man/reorder.factor.Rd | 23 +-
src/library/stats/man/shapiro.test.Rd | 4 +-
src/library/stats/man/smooth.spline.Rd | 4 +-
src/library/stats/src/deriv.c | 2 +-
src/library/stats/tests/glm.Rout.save | 4 +-
src/library/stats/tests/ks-test.Rout.save | 4 +-
src/library/stats/tests/nls.Rout.save | 4 +-
src/library/stats/tests/simulate.Rout.save | 4 +-
src/library/tools/R/Vignettes.R | 4 +-
src/library/tools/R/build.R | 10 +-
src/library/tools/R/index.R | 4 +-
src/library/tools/R/install.R | 17 +-
src/library/utils/R/sessionInfo.R | 3 +-
src/library/utils/inst/doc/Sweave.pdf | Bin 320240 -> 319810 bytes
src/library/utils/man/SweaveUtils.Rd | 7 +-
src/library/utils/man/download.file.Rd | 14 +-
src/library/utils/man/url.show.Rd | 2 +-
src/main/CommandLineArgs.c | 1 -
src/main/character.c | 76 +-
src/main/coerce.c | 6 +-
src/main/envir.c | 50 +-
src/main/eval.c | 12 +-
src/main/objects.c | 2 +-
src/main/printutils.c | 22 +-
src/main/unique.c | 60 +-
src/nmath/rgamma.c | 14 +-
src/unix/sys-std.c | 47 +-
tests/Examples/datasets-Ex.Rout.save | 4 +-
tests/Examples/grDevices-Ex.Rout.save | 4 +-
tests/Examples/graphics-Ex.Rout.save | 8 +-
tests/Examples/grid-Ex.Rout.save | 4 +-
tests/Examples/splines-Ex.Rout.save | 4 +-
tests/Examples/stats-Ex.Rout.save | 22 +-
tests/Examples/stats4-Ex.Rout.save | 4 +-
tests/Examples/tools-Ex.Rout.save | 6 +-
tests/R-intro.Rout.save | 2 +-
tests/any-all.Rout.save | 2 +-
tests/arith-true.Rout.save | 4 +-
tests/arith.Rout.save | 2 +-
tests/complex.Rout.save | 2 +-
tests/d-p-q-r-tests.Rout.save | 4 +-
tests/datasets.Rout.save | 2 +-
tests/datetime.Rout.save | 2 +-
tests/datetime2.Rout.save | 2 +-
tests/demos.Rout.save | 8 +-
tests/eval-etc.Rout.save | 2 +-
tests/iec60559.Rout.save | 2 +-
tests/internet.Rout.save | 4 +-
tests/isas-tests.Rout.save | 4 +-
tests/lapack.Rout.save | 2 +-
tests/lm-tests.Rout.save | 2 +-
tests/method-dispatch.Rout.save | 2 +-
tests/ok-errors.Rout.save | 2 +-
tests/p-r-random-tests.Rout.save | 4 +-
tests/print-tests.Rout.save | 2 +-
tests/r-strict-tst.R | 5 +
tests/reg-IO.Rout.save | 2 +-
tests/reg-IO2.Rout.save | 2 +-
tests/reg-S4.Rout.save | 2 +-
tests/reg-examples3.Rout.save | 2 +-
tests/reg-plot.Rout.save | 2 +-
tests/reg-tests-1c.R | 80 +-
tests/reg-tests-2.Rout.save | 8 +-
tests/reg-tests-3.Rout.save | 2 +-
tests/simple-true.Rout.save | 2 +-
237 files changed, 892 insertions(+), 16743 deletions(-)
diff --git a/SVN-REVISION b/SVN-REVISION
index 104267c..a6ddb49 100644
--- a/SVN-REVISION
+++ b/SVN-REVISION
@@ -1,2 +1,2 @@
-Revision: 70573
-Last Changed Date: 2016-05-03
+Revision: 70800
+Last Changed Date: 2016-06-21
diff --git a/VERSION b/VERSION
index 15a2799..bea438e 100644
--- a/VERSION
+++ b/VERSION
@@ -1 +1 @@
-3.3.0
+3.3.1
diff --git a/VERSION-NICK b/VERSION-NICK
index cdfb158..362a1bd 100644
--- a/VERSION-NICK
+++ b/VERSION-NICK
@@ -1 +1 @@
-Supposedly Educational
+Bug in Your Hair
diff --git a/configure b/configure
index e53821d..c6736e5 100755
--- a/configure
+++ b/configure
@@ -1,6 +1,6 @@
#! /bin/sh
# Guess values for system-dependent variables and create Makefiles.
-# Generated by GNU Autoconf 2.69 for R 3.3.0.
+# Generated by GNU Autoconf 2.69 for R 3.3.1.
#
# Report bugs to <https://bugs.r-project.org>.
#
@@ -590,8 +590,8 @@ MAKEFLAGS=
# Identity of this package.
PACKAGE_NAME='R'
PACKAGE_TARNAME='R'
-PACKAGE_VERSION='3.3.0'
-PACKAGE_STRING='R 3.3.0'
+PACKAGE_VERSION='3.3.1'
+PACKAGE_STRING='R 3.3.1'
PACKAGE_BUGREPORT='https://bugs.r-project.org'
PACKAGE_URL='https://www.r-project.org'
@@ -1663,7 +1663,7 @@ if test "$ac_init_help" = "long"; then
# Omit some internal or obsolete options to make the list less imposing.
# This message is too long to be a string in the A/UX 3.1 sh.
cat <<_ACEOF
-\`configure' configures R 3.3.0 to adapt to many kinds of systems.
+\`configure' configures R 3.3.1 to adapt to many kinds of systems.
Usage: $0 [OPTION]... [VAR=VALUE]...
@@ -1738,7 +1738,7 @@ fi
if test -n "$ac_init_help"; then
case $ac_init_help in
- short | recursive ) echo "Configuration of R 3.3.0:";;
+ short | recursive ) echo "Configuration of R 3.3.1:";;
esac
cat <<\_ACEOF
@@ -1989,7 +1989,7 @@ fi
test -n "$ac_init_help" && exit $ac_status
if $ac_init_version; then
cat <<\_ACEOF
-R configure 3.3.0
+R configure 3.3.1
generated by GNU Autoconf 2.69
Copyright (C) 2012 Free Software Foundation, Inc.
@@ -3141,7 +3141,7 @@ cat >config.log <<_ACEOF
This file contains any messages produced by compilers while
running configure, to aid debugging if configure makes a mistake.
-It was created by R $as_me 3.3.0, which was
+It was created by R $as_me 3.3.1, which was
generated by GNU Autoconf 2.69. Invocation command line was
$ $0 $@
@@ -46481,7 +46481,7 @@ cat >>$CONFIG_STATUS <<\_ACEOF || ac_write_fail=1
# report actual input values of CONFIG_FILES etc. instead of their
# values after options handling.
ac_log="
-This file was extended by R $as_me 3.3.0, which was
+This file was extended by R $as_me 3.3.1, which was
generated by GNU Autoconf 2.69. Invocation command line was
CONFIG_FILES = $CONFIG_FILES
@@ -46548,7 +46548,7 @@ _ACEOF
cat >>$CONFIG_STATUS <<_ACEOF || ac_write_fail=1
ac_cs_config="`$as_echo "$ac_configure_args" | sed 's/^ //; s/[\\""\`\$]/\\\\&/g'`"
ac_cs_version="\\
-R config.status 3.3.0
+R config.status 3.3.1
configured by $0, generated by GNU Autoconf 2.69,
with options \\"\$ac_cs_config\\"
diff --git a/debian/R-2.5.0.patch b/debian/R-2.5.0.patch
deleted file mode 100644
index bcf7b3c..0000000
--- a/debian/R-2.5.0.patch
+++ /dev/null
@@ -1,149 +0,0 @@
-diff -uNr R-2.5.0/src/nmath/standalone/Makefile.in R-2.5.0-patched/src/nmath/standalone/Makefile.in
---- R-2.5.0/src/nmath/standalone/Makefile.in 2007-03-26 18:42:08.000000000 +0200
-+++ R-2.5.0-patched/src/nmath/standalone/Makefile.in 2007-04-29 14:50:55.000000000 +0200
-@@ -67,7 +67,7 @@
- libRmath_la_LDFLAGS =
-
- CLEANFILES = Makedeps *.d *.o *.lo test $(SOURCES)
--DISTCLEANFILES = Makefile $(Rexeclibdir_LIBRARIES) $(Rexeclibdir_LTLIBRARIES)
-+DISTCLEANFILES = Makefile libRmath.pc $(Rexeclibdir_LIBRARIES) $(Rexeclibdir_LTLIBRARIES)
-
- DEFS = -DHAVE_CONFIG_H -DMATHLIB_STANDALONE
- ALL_CPPFLAGS = $(R_XTRA_CPPFLAGS) -I$(srcdir)/.. $(CPPFLAGS) $(DEFS)
-@@ -78,7 +78,7 @@
- @r_cc_lo_rules_frag@
-
-
--all: Makefile inc static shared
-+all: Makefile inc static shared build-pc
-
- inc:
- (cd ../../include; $(MAKE) Rmath.h)
-@@ -100,6 +100,11 @@
- shared: Makefile ../../include/Rconfig.h Copy Makedeps
- @$(MAKE) $(Rexeclibdir_LTLIBRARIES)
-
-+build-pc:
-+ @$(SED) -e "s:@libdir:$(libdir):" -e "s:@includedir:$(includedir):" \
-+ -e 's/@VERSION/$(VERSION)/' -e 's/@libm/$(LIBM)/' $(srcdir)/libRmath.pc.in \
-+ > "libRmath.pc"
-+
- ../../include/Rconfig.h:
- (cd $(@D); $(MAKE) $(@F))
-
-@@ -163,9 +168,7 @@
-
- install-pc:
- @$(MKINSTALLDIRS) "$(libdir)/pkgconfig"
-- @$(SED) -e "s:@libdir:$(libdir):" -e "s:@includedir:$(includedir):" \
-- -e 's/@VERSION/$(VERSION)/' -e 's/@libm/$(LIBM)/' $(srcdir)/libRmath.pc.in \
-- > "$(libdir)/pkgconfig/libRmath.pc"
-+ @$(INSTALL_DATA) libRmath.pc "$(libdir)/pkgconfig/libRmath.pc"
-
- uninstall:
- @rm -f $(includedir)/Rmath.h $(libdir)/$(libRmath_la) $(libdir)/libRmath.a "$(libdir)/pkgconfig/libRmath.pc"
-diff -uNr R-2.5.0/src/scripts/Makefile.in R-2.5.0-patched/src/scripts/Makefile.in
---- R-2.5.0/src/scripts/Makefile.in 2007-03-26 18:42:09.000000000 +0200
-+++ R-2.5.0-patched/src/scripts/Makefile.in 2007-04-29 14:50:14.000000000 +0200
-@@ -23,17 +23,22 @@
- DISTFILES = Makefile.in Makefile.win $(SCRIPTS_S) $(SCRIPTS_B_IN) R.sh.in
-
- CLEANFILES =
--DISTCLEANFILES = Makefile R.fe R.sh $(SCRIPTS_B)
-+DISTCLEANFILES = Makefile R.fe R.fe2 R.sh $(SCRIPTS_B)
-
- all: Makefile R
-
- Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status
- @cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@
-
--R: $(SCRIPTS_B) R.fe
-+R: $(SCRIPTS_B) R.fe R.fe2
- @$(MAKE) rhome=$(top_builddir) install-cmds
- @$(INSTALL_SCRIPT) R.fe $(top_builddir)/bin/R
-
-+R.fe2:
-+ @(d=`echo '$(rhome)' | sed 's,/,\\\/,g';`; \
-+ sed -e "s/\\(R_HOME_DIR=\\).*/\\1$${d}/;" -e "s+\\(R_SHARE_DIR=\\).*+\\1$(rsharedir)+;" -e "s+\\(R_INCLUDE_DIR=\\).*+\\1$(rincludedir)+;" -e "s+\\(R_DOC_DIR=\\).*+\\1$(rdocdir)+;"\
-+ < R.fe > $@)
-+
- ## <NOTE>
- ## Seems we need target rules for creating FOO from FOO.in: pattern
- ## rules ('%:%.in') are not portable, and some versions of Make do not
-@@ -95,10 +100,8 @@
-
- install: installdirs install-cmds
- @rm -f $(bindir)/R
-- @(d=`echo '$(rhome)' | sed 's,/,\\\/,g';`; \
-- sed -e "s/\\(R_HOME_DIR=\\).*/\\1$${d}/;" -e "s+\\(R_SHARE_DIR=\\).*+\\1$(rsharedir)+;" -e "s+\\(R_INCLUDE_DIR=\\).*+\\1$(rincludedir)+;" -e "s+\\(R_DOC_DIR=\\).*+\\1$(rdocdir)+;"\
-- < R.fe > "$(Rexecbindir)/R")
-- @$(INSTALL_SCRIPT) "$(Rexecbindir)/R" "$(bindir)/R"
-+ @$(INSTALL_SCRIPT) R.fe2 "$(Rexecbindir)/R"
-+ @$(INSTALL_SCRIPT) R.fe2 "$(bindir)/R"
- @chmod 755 "$(bindir)/R" "$(Rexecbindir)/R"
- ## why of all the scriots does this alone chmod just one copy?
- installdirs:
-diff -uNr R-2.5.0/src/unix/Makefile.in R-2.5.0-patched/src/unix/Makefile.in
---- R-2.5.0/src/unix/Makefile.in 2007-03-26 18:41:33.000000000 +0200
-+++ R-2.5.0-patched/src/unix/Makefile.in 2007-04-29 14:51:55.000000000 +0200
-@@ -26,7 +26,7 @@
-
- @WANT_R_SHLIB_TRUE at ALL_CFLAGS = $(ALL_CFLAGS_LO)
-
--all: Makefile Makedeps R
-+all: Makefile Makedeps R
-
- Makefile: $(srcdir)/Makefile.in \
- $(top_builddir)/config.status \
-@@ -38,11 +38,23 @@
- @cat $(DEPENDS) >> Makefile
- @touch $@
-
--R: Makefile
-+R: Makefile
- @$(MAKE) Makedeps
- @WANT_R_SHLIB_FALSE@ @$(MAKE) libunix.a
- @WANT_R_SHLIB_TRUE@ @$(MAKE) stamp-lo
-+ @$(MAKE) rhome=$(abs_top_builddir) build-Rscript
- @$(MAKE) rhome=$(abs_top_builddir) install-Rscript
-+ @$(MAKE) build-Rscript
-+ @$(MAKE) build-pc
-+
-+build-pc:
-+ @$(SED) -e "s:@rhome:$(rhome):" -e "s:@rincludedir:$(rincludedir):" \
-+ -e 's/@VERSION/$(VERSION)/' $(srcdir)/libR.pc.in \
-+ > "libR.pc"
-+
-+build-Rscript:
-+ $(CC) $(ALL_CPPFLAGS) $(ALL_CFLAGS) -DR_HOME='"$(rhome)"' -o Rscript \
-+ $(srcdir)/Rscript.c
-
- ## is this portable?
- ../include/Rversion.h:
-@@ -60,22 +72,19 @@
- clean:
- @-rm -rf .libs _libs
- @-rm -f Makedeps *.d *.o *.a *.lo *.la stamp-lo
-+ @-rm -f Rscript libR.pc
- distclean: clean
- @-rm -f Makefile
- maintainer-clean: distclean
-
--## we need to build at install time to capture the correct 'rhome'
-+## install previously built Rscript
- install-Rscript:
-- $(CC) $(ALL_CPPFLAGS) $(ALL_CFLAGS) -DR_HOME='"$(rhome)"' -o Rscript \
-- $(srcdir)/Rscript.c
- @$(MKINSTALLDIRS) "$(Rexecbindir)"
- @$(INSTALL_PROGRAM) Rscript "$(Rexecbindir)/Rscript"
--## substitute at install time to allow 'prefix' to be overridden
-+## install previously built libR.pc
- install-pc:
- @$(MKINSTALLDIRS) "$(libdir)/pkgconfig"
-- @$(SED) -e "s:@rhome:$(rhome):" -e "s:@rincludedir:$(rincludedir):" \
-- -e 's/@VERSION/$(VERSION)/' $(srcdir)/libR.pc.in \
-- > "$(libdir)/pkgconfig/libR.pc"
-+ @$(INSTALL_DATA) libR.pc "$(libdir)/pkgconfig/libR.pc"
- install: install-Rscript @WANT_R_SHLIB_TRUE@ install-pc
- @$(MKINSTALLDIRS) "$(bindir)"
- @$(INSTALL_PROGRAM) Rscript "$(bindir)/Rscript"
diff --git a/debian/R.bash-completion b/debian/R.bash-completion
deleted file mode 100644
index 8ca80b5..0000000
--- a/debian/R.bash-completion
+++ /dev/null
@@ -1,499 +0,0 @@
-## Copyright (C) 2005-2014 Deepayan Sarkar <Deepayan.Sarkar at R-project.org>
-###
-### This file provides programmable completion for R under the bash
-### shell. It is made available under the terms of the GNU General
-### Public License, version 2, or at your option, any later version,
-### incorporated herein by reference.
-###
-### This program is distributed in the hope that it will be
-### useful, but WITHOUT ANY WARRANTY; without even the implied
-### warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
-### PURPOSE. See the GNU General Public License, available at
-### http://www.gnu.org/licenses/licenses.html, for more details.
-
-
-### NOTE: This does NOT provide completion for commands within R, only
-### for R's command-line options. For example,
-###
-### R CMD build --f[TAB]
-###
-### will complete to --force and so on. In other words, this is
-### potentially useful (for the most part) to package developers, not
-### regular users.
-
-### NEWS: Updated for R 2.4.0 (October 2006)
-
-### BUGS: As it stands, this is far from perfect. Known bugs include:
-###
-### (1) Not all mutually exclusive options are properly handled
-###
-### (2) Doesn't test for the existence of R before defining the
-### (2) completion function (not strictly a bug, but definitely not a
-### (2) good feature)
-
-
-### INSTALLATION AND USAGE: You need to first install and enable bash
-### completion on your system to use this script. See
-###
-### http://www.caliban.org/bash/index.shtml#completion
-###
-### to learn more about bash completion. On a modern Debian system,
-### all the necessary files are already installed by the bash package.
-### To enable it, just uncomment the following lines in your .bashrc
-###
-### # if [ "$PS1" -a -f /etc/bash_completion ]; then
-### # . /etc/bash_completion
-### # fi
-###
-### or to try it out in your current shell, type
-###
-### . /etc/bash_completion
-###
-### Once you are using bash completion, you can enable completion for
-### R by similarly sourcing this file. For permanent use, place it in
-### your $BASH_COMPLETION_DIR (/etc/bash_completion.d in Debian). If
-### you don't have access to do that, copy the contents of this file
-### in it's entirety to your ~/.bash_completion, which is sourced by
-### the bash_completion script.
-
-
-
-
-_R()
-{
- local cur loneOpts helpOpts stdOpts argOpts versOpts cmds cmd furtherOpts
- local fileNames dirNames i lastToken
- # local IFS=$'\t\n'
-
- COMPREPLY=()
- cur=${COMP_WORDS[COMP_CWORD]}
-
- loneOpts='--version RHOME'
- versOpts='-v --version' # only on commands
- helpOpts='-h --help'
-
- stdOpts='--save --no-save --no-environ --no-site-file \
- --no-init-file --restore --no-restore-data --no-restore-history \
- --no-restore --vanilla --no-readline -q --quiet --silent --slave \
- --interactive --verbose -d -g --args -f -e'
-
- ## these should end with a '=' and not be followed by a space.
- ## Unfortunately, I haven't figured out how to make that work.
- ## -nospace doesn't suppress the space, and if I add = at the end,
- ## they get completed as "--debugger\= " etc. Anyway, they are
- ## kept separate in anticipation of some future fix...
-
- argOpts='--min-vsize --max-vsize --min-nsize --max-nsize \
- --encoding --max-ppsize --debugger --debugger-args \
- --gui --arch --file'
-
- cmds='BATCH COMPILE SHLIB INSTALL REMOVE build check LINK Rprof \
- Rdconv Rd2pdf Rd2txt Stangle Sweave Rdiff config javareconf rtags'
-
-
-
-
- fileNames='' # possible to have files in certain commands (e.g. BATCH)
- dirNames=''
-
-
- if [[ $COMP_CWORD -eq 1 ]] ; then
- COMPREPLY=(
- $( compgen -W "CMD $loneOpts $helpOpts $stdOpts" -- $cur )
- $( compgen -o nospace -W "$argOpts" -- $cur )
- )
- return 0
- fi
-
- ## certain tokens preclude further activity
- if [[ ${COMP_WORDS[$COMP_CWORD-1]} == @(-v|--version|RHOME|-h|--help) ]] ; then
- return 0
- fi
-
- ## more complicated stuff
- ## keep last token for use later
- lastToken=${COMP_WORDS[$COMP_CWORD-1]}
-
-
- ## if [[ $COMP_CWORD -gt 1 ]] && (implied)
- if [[ ${COMP_WORDS[1]} == "CMD" ]] ; then
-
- if [[ $COMP_CWORD -eq 2 ]] ; then
- COMPREPLY=(
- $( compgen -W "$cmds" -- $cur )
- )
- return 0
- else
-
- ## COMP_CWORD >= 3. cmd=${COMP_WORDS[2]} is (hopefully)
- ## one of $cmds. At this point, all further options
- ## (except -v|-h|RHOME etc handled above) will be assumed
- ## repeatable (except for duplicates and exclusives, to be
- ## handled later). In the next step, possible completions
- ## for each cmd will be derived.
-
- ## A largely similar derivation is also needed for the
- ## case when ${COMP_WORDS[2]} is not CMD. A similar
- ## completion list will be derived in that case.
- ## Afterwards, things will be removed from these as
- ## needed, before the final COMPREPLY is computed.
-
- cmd=${COMP_WORDS[2]}
- case $cmd in
- BATCH)
-
- ## if last word is a filename (not starting with
- ## -) then no more options are allowed, but can be
- ## followed by any file (outfile)
-
- if [[ $COMP_CWORD -gt 3 ]] && \
- [[ $lastToken != -* ]] ; then
-
- furtherOpts=""
- fileNames=$( compgen -f -- "$cur" )
- dirNames=$( compgen -d -- "$cur" )
-
- else
-
- furtherOpts="$versOpts $helpOpts $stdOpts $argOpts --no-timing"
- fileNames=$( compgen -f -X '!*.@(R|r|S|s)' -- "$cur" )
- dirNames=$( compgen -d -- "$cur" )
-
- fi
- ;;
-
- COMPILE)
- if [[ $COMP_CWORD -gt 3 ]] && \
- [[ $lastToken != -* ]] ; then
-
- furtherOpts=""
- fileNames=$( compgen -f -X '!*.@(c|cc|cpp|C|f)' -- "$cur" )
- dirNames=$( compgen -d -- "$cur" )
-
- else
-
- furtherOpts="$versOpts $helpOpts -D"
- fileNames=$( compgen -f -X '!*.@(c|cc|cpp|C|f)' -- "$cur" )
- dirNames=$( compgen -d -- "$cur" )
-
- fi
- ;;
-
- SHLIB)
- if [[ $COMP_CWORD -gt 3 ]] && \
- [[ $lastToken != -* ]] ; then
-
- furtherOpts=""
- fileNames=$( compgen -f -X '!*.@(a|o)' -- "$cur" )
- dirNames=$( compgen -d -- "$cur" )
-
- else
-
- furtherOpts="$versOpts $helpOpts -o --output -c --clean \
- --preclean -n --dry-run"
- fileNames=$( compgen -f -X '!*.@(a|o)' -- "$cur" )
- dirNames=$( compgen -d -- "$cur" )
-
- fi
-
- ;;
-
- INSTALL)
- if [[ $COMP_CWORD -gt 3 ]] && \
- [[ $lastToken == @(-l|--library) ]] ; then
-
- furtherOpts=""
- dirNames=$( compgen -d -- "$cur" )
-
- else
-
- furtherOpts="$versOpts $helpOpts \
---configure-args --configure-vars -c --clean --preclean -d --debug -l \
---library --no-configure --no-docs --html --no-html --latex --example \
---fake --no-lock --lock --pkglock --build --install-tests --no-R \
---no-libs --no-data --no-help --no-demo --no-exec --no-inst \
---no-multiarch --libs-only --data-compress --resave-data \
---compact-docs --with-keep.source --without-keep.source --byte-compile \
---no-byte-compile --no-test-load --no-clean-on-error --merge-multiarch \
---built-timestamp"
- fileNames=$( compgen -f -X '!*.@(tar.gz|tgz)' -- "$cur" )
- dirNames=$( compgen -d -- "$cur" )
-
- fi
- ;;
-
- REMOVE)
- furtherOpts="$versOpts $helpOpts -l --library"
- if [[ $COMP_CWORD -gt 3 ]] && \
- [[ $lastToken == @(-l|--library) ]] ; then
- dirNames=$( compgen -d -- "$cur" )
- fi
- ;;
-
- build)
-
- furtherOpts="$versOpts $helpOpts \
---force --keep-empty-dirs --no-build-vignettes --no-manual --resave-data \
---no-resave-data --compact-vignettes --md5"
- dirNames=$( compgen -d -- "$cur" )
- ;;
-
- check)
-
- furtherOpts="$versOpts $helpOpts \
--l --library -o --output \
---no-clean --no-codoc --no-examples --no-install --no-tests \
---no-manual --no-vignettes --no-build-vignettes --run-dontrun \
---run-donttest --use-gct --use-valgrind --timings \
---install-args --test-dir --check-subdirs --as-cran \
---extra-arch --multiarch --no-multiarch --force-multiarch"
-
- fileNames=$( compgen -f -X '!*.@(tar.gz|tgz)' -- "$cur" )
- dirNames=$( compgen -d -- "$cur" )
- ;;
-
- LINK)
- furtherOpts="$versOpts $helpOpts"
- ;;
-
- Rprof)
- furtherOpts="$versOpts $helpOpts --lines --total --self --linesonly --min%total --min%self"
- fileNames=$( compgen -f -- "$cur" )
- dirNames=$( compgen -d -- "$cur" )
- ;;
-
- Rdconv)
-
- furtherOpts="$versOpts $helpOpts -t --type \
- --encoding --package -o --output --os --OS"
-
- fileNames=$( compgen -f -X '!*.@(Rd)' -- "$cur" )
- dirNames=$( compgen -d -- "$cur" )
- ;;
-
- Rd2pdf)
-
- furtherOpts="$versOpts $helpOpts --batch \
- --no-clean --no-preview --encoding --outputEncoding \
- --os --OS -o --output --force --title \
- --no-index --no-description --internals"
-
- fileNames=$( compgen -f -X '!*.@(Rd)' -- "$cur" )
- dirNames=$( compgen -d -- "$cur" )
- ;;
-
- Rd2txt)
- furtherOpts="$versOpts $helpOpts -t --type --encoding --package -o --output --os --OS"
- fileNames=$( compgen -f -X '!*.@(Rd)' -- "$cur" )
- dirNames=$( compgen -d -- "$cur" )
- ;;
-
- Sweave)
-
- ## if last word is a filename (not starting with
- ## -) then nothing more is allowed
-
- if [[ $COMP_CWORD -gt 3 ]] && \
- [[ $lastToken != -* ]] ; then
-
- return 0
-
- else
-
- furtherOpts="$versOpts $helpOpts --driver --engine --encoding --options --pdf --compact"
- fileNames=$( compgen -f -X '!*.@(Rnw|rnw|Snw|snw|Rmd|rmd)' -- "$cur" )
- dirNames=""
- ## dirNames=$( compgen -d -- "$cur" )
-
- fi
- ;;
-
- Stangle)
-
- ## if last word is a filename (not starting with
- ## -) then nothing more is allowed
-
- if [[ $COMP_CWORD -gt 3 ]] && \
- [[ $lastToken != -* ]] ; then
-
- return 0
-
- else
-
- furtherOpts="$versOpts $helpOpts --engine --encoding --options"
- fileNames=$( compgen -f -X '!*.@(Rnw|rnw|Snw|snw|Rmd|rmd)' -- "$cur" )
- dirNames=""
- ## dirNames=$( compgen -d -- "$cur" )
-
- fi
- ;;
-
- config)
-
- if [[ $COMP_CWORD -gt 3 ]] ; then
-
- return 0
-
- else
-
- furtherOpts="$versOpts $helpOpts --ldflags --cppflags \
---no-user-files --no-site-files \
-BLAS_LIBS CC CFLAGS CPICFLAGS CPP CPPFLAGS CXX CXXCPP CXXFLAGS \
-CXXPICFLAGS DYLIB_EXT DYLIB_LD DYLIB_LDFLAGS F77 FFLAGS FLIBS \
-FPICFLAGS FC FCFLAGS FCPICFLAGS JAR JAVA JAVAC JAVAH JAVA_HOME \
-JAVA_LIBS JAVA_CPPFLAGS LAPACK_LIBS LIBnn LDFLAGS OBJC OBJCFLAGS MAKE \
-SAFE_FFLAGS SHLIB_CFLAGS SHLIB_CXXLD SHLIB_CXXLDFLAGS SHLIB_EXT \
-SHLIB_FFLAGS SHLIB_LD SHLIB_LDFLAGS SHLIB_FCLD SHLIB_FCLDFLAGS \
-TCLTK_CPPFLAGS TCLTK_LIBS"
-
- fi
- ;;
-
-
- javareconf)
- furtherOpts="$versOpts $helpOpts -n --dry-run -e"
- ;;
-
-
- rtags)
- furtherOpts="$versOpts $helpOpts -o --output --no-c --no-R \
- --no-Rd -a --append -V --verbose"
- dirNames=$( compgen -d -- "$cur" )
- ;;
-
- esac
-
- fi
-
- elif [[ $lastToken == "<" ]] ; then
-
- ## R [options] < <need .R file here>
- furtherOpts=""
- fileNames=$( compgen -f -X '!*.@(R|r|S|s)' -- "$cur" )
- dirNames=$( compgen -d -- "$cur" )
-
- elif [[ $lastToken == ">" ]] ; then
-
- ## R [options] > <need output file here>
- furtherOpts=""
- fileNames=$( compgen -f -- "$cur" )
- dirNames=$( compgen -d -- "$cur" )
-
- else
-
- case $lastToken in
-
- -g|--gui)
- furtherOpts="X11 Tk"
- ;;
- -d|--debugger) ## allow commands
- furtherOpts=$( compgen -c -- "$cur" )
- ;;
-
- -f|--file)
- fileNames=$( compgen -f -X '!*.@(R|r|S|s)' -- "$cur" )
- dirNames=""
- ## dirNames=$( compgen -d -- "$cur" )
- ;;
-
- *) ## NOT 'R CMD <something> ': see comments above
- furtherOpts="$versOpts $helpOpts $stdOpts $argOpts" ;;
-
- esac
- fi
-
- ## need some removal
-
- ## take out options already given
- for (( i=1; i<=$COMP_CWORD-1; ++i )) ; do
-
- opt=${COMP_WORDS[$i]}
-
- case $opt in
- --*) optBase=${opt/=*/} ;;
- -*) optBase=${opt:0:2} ;;
- esac
-
- ## can't seem to do this using case
- if [[ $opt == "<" ]] ; then
- ## no more args allowed
- furtherOpts=""
- elif [[ $opt == ">" ]] ; then
- ## no more args allowed
- furtherOpts=""
- fi
-
-
- allOpts=" $furtherOpts "
- allOpts=${allOpts/ ${optBase} / }
-
- #echo $allOpts
-
- ## take out alternatives and mutually exclusives
- case $optBase in
-
-# not working
-# "<") ## only filenames allowed
-# echo "-----------"
-# allOpts=">" ;;
-# ">") ## only filenames allowed
-# allOpts="<" ;;
-
- -q|--quiet|--silent)
- allOpts=${allOpts/ -q / }
- allOpts=${allOpts/ --quiet / }
- allOpts=${allOpts/ --silent / }
- #echo $allOpts
-
- ;;
- --save|--no-save)
- allOpts=${allOpts/ --save / }
- allOpts=${allOpts/ --no-save / }
- ;;
- --vanilla)
- allOpts=${allOpts/ --no-save / }
- allOpts=${allOpts/ --no-restore / }
- allOpts=${allOpts/ --no-site-file / }
- allOpts=${allOpts/ --no-init-file / }
- allOpts=${allOpts/ --no-environ / }
- ;;
- -d) allOpts=${allOpts/ --debugger / } ;;
- --debugger) allOpts=${allOpts/ -d / } ;;
- --restore) allOpts=${allOpts/ --no-restore / } ;;
- --no-restore) allOpts=${allOpts/ --restore / } ;;
- -g|--gui)
- allOpts=${allOpts/ -g / }
- allOpts=${allOpts/ --gui / }
- ;;
-
- BATCH)
- allOpts=${allOpts/ --restore / }
- allOpts=${allOpts/ --save / }
- allOpts=${allOpts/ --no-readline / }
- ;;
-
- esac
-
- done
-
- ## and finally:
-
- COMPREPLY=(
- $( compgen -W "$allOpts $fileNames $dirNames" -- $cur )
- )
- return 0
-
-
-}
-
-complete -F _R -o default R
-
-## Add more aliases here, e.g.
-
-# for e in R-devel R-patched; do complete -F _R -o default ${e}; done
-
-
-
-### Local variables:
-### mode: shell-script
-### End:
diff --git a/debian/README.Atlas b/debian/README.Atlas
deleted file mode 100644
index 8e29236..0000000
--- a/debian/README.Atlas
+++ /dev/null
@@ -1,186 +0,0 @@
-
- Notes on using Atlas libs with GNU Octave and GNU R
-
-I. Overview
-===========
-
-As of the Debian releases 2.1.34-6 (for GNU Octave) and 1.3.0-3 (for GNU R),
-both Octave and R can be used with Atlas, the Automatically Tuned Linear
-Algebra Software, in order to obtain much faster linear algebra operations.
-
-To make use of Atlas, Debian users need to install the Atlas libraries for
-their given cpu architecture. Concretely, one of
-
- libatlas3gf-base - Automatically Tuned Linear Algebra Software, generic
- libatlas3gf-sse - Automatically Tuned Linear Algebra Software, SSE1
- libatlas3gf-sse2 - Automatically Tuned Linear Algebra Software, SSE2
- libatlas3gf-3dnow - Automatically Tuned Linear Algebra Software, 3dnow
-
-must be installed. Here, 'base' provides generic libraries which run on all
-platforms whereas 'sse' and 'sse2' stand for the SSE (v1 and v2) extension
-available on most Intel cpus, and '3dnow' for those made by AMS.
-
-The Atlas libraries can be loaded dynamically instead of the (non-optimised)
-blas and lapack libraries against which both Octave and R are compiled.
-
-Section III below briefly describes how Atlas libraries can be compiled for
-your specific machine to further optimise performance.
-
-
-II. Using the Atlas libraries
-=============================
-
-II.A New default behaviour with automatic loading of the Atlas libraries
-------------------------------------------------------------------------
-
-Users have to make no changes whatsoever as the Atlas library will be loaded
-instead of the standard blas and lapack libraries.
-
-An example such as the script below can be useful to test the performance.
-
-II.B Old behaviour requiring LD_LIBRARY_PATH for Octave
--------------------------------------------------------
-
-[ NB: This section has long been obsolete is kept for the historical record
- only. ]
-
-For Octave, use the variable LD_LIBRARY_PATH. On a computer with the
-atlas2-base package:
-
- $ LD_LIBRARY_PATH=/usr/lib/atlas octave2.1 -q
- octave2.1:1> X=randn(1000,1000);t=cputime();Y=X'*X;cputime-t
- ans = 7.9600
-
- $ edd at homebud:~> octave2.1 -q
- octave2.1:1> X=randn(1000,1000);t=cputime();Y=X'*X;cputime-t
- ans = 61.520
-
-For R version 1.3.0-4, the R_LD_LIBRARY_PATH variable has to be used, and its
-value needs to be copied out of /usr/bin/R (or edited therein). For R version
-1.3.1 or later this is done automatically in the R startup shell script. For
-an Athlon machine, and with the explicit definition which is no longer needed
-as of R 1.3.1, the example becomes
-
- $ R_LD_LIBRARY_PATH=/usr/lib/R/bin:/usr/local/lib:/usr/X11R6/lib:/usr/lib/3dnow/atlas:/usr/lib:/usr/X11R6/lib:/usr/lib/gcc-lib/i386-linux/2.95.4:. R --vanilla -q
- > mm <- matrix(rnorm(10^6), ncol = 10^3)
- > system.time(crossprod(mm))
- [1] 2.38 0.04 2.84 0.00 0.00
-
- $ R --vanilla -q
- > mm <- matrix(rnorm(10^6), ncol = 10^3)
- > system.time(crossprod(mm))
- [1] 28.28 0.08 33.54 0.00 0.00
- >
-
-Running such a small example is highly recommded to ascertain that the
-libraries are indeed found, and to "prove" that the speed gain is real (and
-significant) for problems of at least a medium size as the 1000x1000 examples
-above.
-
-Note that the example use "/usr/lib/atlas" for the atlas2-base package;
-Athlon users should employ "/usr/lib/3dnow/atlas", Pentium III users should
-employ "/usr/lib/xmm/atlas" and Pentium IV users should employ
-"/usr/lib/26/atlas".
-
-Lastly, it should be pointed out that it is probably worthwhile to locally
-compile, and thereby optimise, the Atlas libraries if at least a moderately
-intensive load is expected. This is described in the next section.
-
-
-III. Locally compiling the Atlas libraries
-==========================================
-
-The Debian Atlas packages have been setup to allow for local recompilation of
-the Atlas libraries. This way the behaviour will be tuned exactly to the
-specific CPU rather than the broader class of CPUs. It has been reported that
-this can increase performance by a further 12% on the examples above.
-Detailed instructions are in /usr/share/doc/atlas2-base/README.debian.gz but
-the process is essentially the following [ courtesy of Doug Bates ]
-
- apt-get source libatlas3gf-base
- cd atlas-$VERSION
- fakeroot debian/rules custom
- # wait for a *very* long time
- dpkg -i ../libatlas3gf-base*.deb
-
-
-IV. See also
-=============
-
-The Atlas packages have a very detailed README.Debian file which should be
-consulted; it also details local recompilation. Sources and documentation for
-Atlas are at http://www.netlib.org/atlas.
-
-
-V. Acknowledgements
-====================
-
-Camm Maguire developed the scheme of overloading Atlas over the default blas
-libraries and deserves all the credit. Many thanks to John Eaton for helping
-debug some errors in the initial setup, and to Doug Bates for work on the R
-package. Special thanks to Ben Collins for providing a patched ldconfig as
-part of the libc6 package.
-
-
-VI. Appendix
-============
-
-A simple test script such as the following
-
------------------------------------------------------------------------------
-#!/bin/sh
-
-# remove Atlas et al
-sudo dpkg --purge libatlas3gf-base > /dev/null
-dpkg -l | grep "blas\|lapack\|atlas"
-
-: ${SIZE=1500}
-: ${REPS=20}
-r_cmd="m<-matrix(rnorm(${SIZE}*${SIZE}),ncol=${SIZE}); cat(mean(replicate($REPS,system.time(crossprod(m))[1]),trim=0.1),'\n')"
-
-echo ""
-echo "GNU R: $r_cmd"
-echo -n " Without Atlas: "
-echo -n "$r_cmd" | R --vanilla --slave
-
-sudo apt-get install libatlas3gf-base > /dev/null
-echo -n " With Atlas base : "
-echo -n "$r_cmd" | R --vanilla --slave
-
-sudo dpkg --purge libatlas3gf-base > /dev/null
-sudo apt-get install libatlas3gf-sse > /dev/null
-echo -n " With Atlas sse : "
-echo -n "$r_cmd" | R --vanilla --slave
-
-sudo dpkg --purge libatlas3gf-sse > /dev/null
-sudo apt-get install libatlas3gf-sse2 > /dev/null
-echo -n " With Atlas sse2 : "
-echo -n "$r_cmd" | R --vanilla --slave
-
-sudo dpkg --purge libatlas3gf-sse2 > /dev/null
------------------------------------------------------------------------------
-
-can be used to test the setup. On a dual Xeon running Debian testing (x86, ie
-32bit) in May 2009, I see the following output:
-
-GNU R: m<-matrix(rnorm(1500*1500),ncol=1500); cat(mean(replicate(20,system.time(crossprod(m))[1]),trim=0.1),'\n')
- Without Atlas: 4.146438
- With Atlas base : 1.788125
- With Atlas sse : 1.573625
- With Atlas sse2 : 0.8465625
-
-indicating about a three-fold increase in speed for the 'base' version and
-even a five-fold increase for the sse2 version.
-
-
-VI. Revision History
-====================
-
-Initial version
- -- Dirk Eddelbuettel <edd at debian.org> Tue, 21 Aug 2001 21:37:15 -0500
-
-First updated
- -- Dirk Eddelbuettel <edd at debian.org> Sun, 11 Nov 2001 11:03:19 -0600
-
-Major update
- -- Dirk Eddelbuettel <edd at debian.org> Sun, 31 May 2009 21:04:47 -0500
diff --git a/debian/README.debian b/debian/README.debian
deleted file mode 100644
index 82c686c..0000000
--- a/debian/README.debian
+++ /dev/null
@@ -1,13 +0,0 @@
-r-base for DEBIAN
-----------------------
-
-This Debian package was created from the sources on the Comprehensive R Archive
-Network sites. The master site is http://cran.r-project.org/
-
-Douglas Bates <bates at stat.wisc.edu>, Wed, 10 Dec 1997 14:17:31 -0600
-
-The executable is called R.
-
-In accordance with the Debian package policy, the executable,
-/usr/lib/R/bin/R.binary, has been stripped. Trying to use the --debugger
-option to R may not be as useful as hoped.
diff --git a/debian/README.mathlib b/debian/README.mathlib
deleted file mode 100644
index 3aa5034..0000000
--- a/debian/README.mathlib
+++ /dev/null
@@ -1,89 +0,0 @@
-
-The Debian package r-mathlib provides the library of standalone mathematical
-functions from the GNU R sources.
-
-Please consult the header file Rmath.h for the full list of available
-functions, and see section "The R API", subection "Using these functions in
-your own code" from the "Writing R Extensions" manual (available in pdf, html
-and info in the r-doc-pdf, r-doc-html and r-doc-info packages, respectively)
-for their usage.
-
-A simple example is provided in the file test.c which, on a Debian system,
-can be built as
- $ gcc test.c -o test_mathlib -lRmath -lm
-Running 'ldd test_mathlib' can verify that the library is linked dynamically.
-
-The full README for the source directory R-$VERSION/src/nmath/standalone is
-included below; you can safely ignore the part about building this library as
-it provided by the Debian r-mathlib package.
-
- -- Dirk Eddelbuettel <edd at debian.org> Thu, 13 Jun 2002 21:27:38 -0500
-
-
------ file R-$VERSION/src/nmath/standalone/README below ---------------------
-
-If you have not yet made R, under Unix you must first configure R, and
-under Windows you need to set up almost all the tools to make R and
-then run (cd .../src/gnuwin32/fixed; make).
-
-
-Under Unix, making in this directory will make standalone libraries
-libRmath.a and libRmath.so. `make static' and `make shared' make
-just one of them.
-
-Under Windows, use make -f Makefile.win. This makes Rmath.dll with
-import library libRmath.a.
-
-NB: certain compilers are unable to do compile-time IEEE-754
-arithmetic and so cannot compile mlutils.c. The known example is
-Sun's cc. Use gcc for mlutils.c (or the whole library).
-
-
-To use the routines in your own C or C++ programs, include
-
-#define MATHLIB_STANDALONE
-#include <Rmath.h>
-
-and link against -lRmath. The example file test.c does nothing
-useful, but is provided to test the process. Note that you will
-probably not be able to run it unless you add the directory containing
-libRmath.so to the LD_LIBRARY_PATH.
-
-
-A little care is needed to use the random-number routines. You will
-need to supply the uniform random number generator
-
- double unif_rand(void)
-
-or use the one supplied (and with a shared library or DLL you will
-have to use the one supplied, which is the Marsaglia-multicarry with
-an entry point
-
- set_seed(unsigned int, unsigned int)
-
-to set its seeds).
-
-The facilties to change the normal random number generator are
-available through the constant N01_kind. This takes values
-from the enumeration type
-
-typedef enum {
- KINDERMAN_RAMAGE,
- AHRENS_DIETER,
- BOX_MULLER
-} N01type;
-
-(and USER_NORM is not available).
-
-
-There is full access to R's handling of NaNs, Inf and -Inf via special
-versions of the macros and functions
-
- ISNAN, R_FINITE, R_log, R_pow and R_pow_di
-
-and (extern) constants R_PosInf, R_NegInf and NA_REAL. These
-facilities work best on IEEE 754 machines, but are available for all.
-
-There is no support for R's notion of missing values, in particular
-not for NA_INTEGER nor the distinction between NA and NaN for doubles.
-
diff --git a/debian/Renviron-R_LIBS.patch b/debian/Renviron-R_LIBS.patch
deleted file mode 100644
index e06d5b2..0000000
--- a/debian/Renviron-R_LIBS.patch
+++ /dev/null
@@ -1,14 +0,0 @@
---- Renviron.orig 2003-04-04 06:52:22.000000000 -0500
-+++ Renviron 2003-04-04 06:49:05.000000000 -0500
-@@ -33,6 +33,11 @@
- PERL=${PERL-'/usr/bin/perl'}
- TAR=${TAR-'tar'}
-
-+# edd Apr 2003 Allow local install in /usr/local, also add a directory for
-+# Debian packaged CRAN packages, and finally the default dir
-+# edd Jul 2007 Now use R_LIBS_SITE, not R_LIBS
-+R_LIBS_SITE=${R_LIBS_SITE-'/usr/local/lib/R/site-library:/usr/lib/R/site-library:/usr/lib/R/library'}
-+
- ### Local Variables: ***
- ### mode: sh ***
- ### sh-indentation: 2 ***
diff --git a/debian/Renviron.site b/debian/Renviron.site
deleted file mode 100644
index ed6fe2a..0000000
--- a/debian/Renviron.site
+++ /dev/null
@@ -1,19 +0,0 @@
-## Emacs please make this -*- R -*-
-## empty Renviron.site for R on Debian
-##
-## Copyright (C) 2008 Dirk Eddelbuettel and GPL'ed
-##
-## see help(Startup) for documentation on ~/.Renviron and Renviron.site
-
-# ## Example ~/.Renviron on Unix
-# R_LIBS=~/R/library
-# PAGER=/usr/local/bin/less
-
-# ## Example .Renviron on Windows
-# R_LIBS=C:/R/library
-# MY_TCLTK="c:/Program Files/Tcl/bin"
-
-# ## Example of setting R_DEFAULT_PACKAGES (from R CMD check)
-# R_DEFAULT_PACKAGES='utils,grDevices,graphics,stats'
-# # this loads the packages in the order given, so they appear on
-# # the search path in reverse order.
diff --git a/debian/Rprofile.site b/debian/Rprofile.site
deleted file mode 100644
index f44b62a..0000000
--- a/debian/Rprofile.site
+++ /dev/null
@@ -1,23 +0,0 @@
-## Emacs please make this -*- R -*-
-## empty Rprofile.site for R on Debian
-##
-## Copyright (C) 2008 Dirk Eddelbuettel and GPL'ed
-##
-## see help(Startup) for documentation on ~/.Rprofile and Rprofile.site
-
-# ## Example of .Rprofile
-# options(width=65, digits=5)
-# options(show.signif.stars=FALSE)
-# setHook(packageEvent("grDevices", "onLoad"),
-# function(...) grDevices::ps.options(horizontal=FALSE))
-# set.seed(1234)
-# .First <- function() cat("\n Welcome to R!\n\n")
-# .Last <- function() cat("\n Goodbye!\n\n")
-
-# ## Example of Rprofile.site
-# local({
-# # add MASS to the default packages, set a CRAN mirror
-# old <- getOption("defaultPackages"); r <- getOption("repos")
-# r["CRAN"] <- "http://my.local.cran"
-# options(defaultPackages = c(old, "MASS"), repos = r)
-#})
diff --git a/debian/arm-perl-regexp.patch b/debian/arm-perl-regexp.patch
deleted file mode 100644
index 5687c50..0000000
--- a/debian/arm-perl-regexp.patch
+++ /dev/null
@@ -1,31 +0,0 @@
---- r-base-2.15.2.orig/src/library/tools/R/install.R
-+++ r-base-2.15.2/src/library/tools/R/install.R
-@@ -54,7 +54,11 @@
- SHLIB_EXT <- if (WINDOWS) ".dll" else {
- ## can we do better?
- mconf <- file.path(R.home(), paste0("etc", rarch), "Makeconf")
-- sub(".*= ", "", grep("^SHLIB_EXT", readLines(mconf), value = TRUE))
-+ if (substr( Sys.info()["machine"], 1, 3) == "arm") { # arm has broken regexps in libc
-+ sub(".*= ", "", grep("^SHLIB_EXT", readLines(mconf), value = TRUE), perl = TRUE)
-+ } else {
-+ sub(".*= ", "", grep("^SHLIB_EXT", readLines(mconf), value = TRUE))
-+ }
- }
-
- options(warn = 1)
-@@ -1616,8 +1620,13 @@
- mconf <- readLines(file.path(R.home(),
- paste0("etc", Sys.getenv("R_ARCH")),
- "Makeconf"))
-- SHLIB_EXT <- sub(".*= ", "", grep("^SHLIB_EXT", mconf, value = TRUE))
-- SHLIB_LIBADD <- sub(".*= ", "", grep("^SHLIB_LIBADD", mconf, value = TRUE))
-+ if (substr( Sys.info()["machine"], 1, 3) == "arm") { # arm has broken regexps in libc
-+ SHLIB_EXT <- sub(".*= ", "", grep("^SHLIB_EXT", mconf, value = TRUE), perl = TRUE)
-+ SHLIB_LIBADD <- sub(".*= ", "", grep("^SHLIB_LIBADD", mconf, value = TRUE), perl = TRUE)
-+ } else {
-+ SHLIB_EXT <- sub(".*= ", "", grep("^SHLIB_EXT", mconf, value = TRUE))
-+ SHLIB_LIBADD <- sub(".*= ", "", grep("^SHLIB_LIBADD", mconf, value = TRUE))
-+ }
- MAKE <- Sys.getenv("MAKE")
- rarch <- Sys.getenv("R_ARCH")
- } else {
diff --git a/debian/build-help.pl b/debian/build-help.pl
deleted file mode 100644
index 51b4276..0000000
--- a/debian/build-help.pl
+++ /dev/null
@@ -1,27 +0,0 @@
-#!/usr/bin/perl -w
-#
-# Under Debian, R add-on packages (i.e. any of the r-cran-* packages)
-# used to call 'build-help.pl' in postinst and postrm:
-# /usr/bin/R CMD perl /usr/lib/R/share/perl/build-help.pl --htmllists
-#
-# However, R changed upstream and html help indices are created on the fly
-# when the user calls help.start() from within R. With that, the call above
-# is no longer needed and has been phased out in most but not yet all of
-# the postinst and postrm scripts.
-#
-# Moreover, starting with R 2.2.1-3, architecture-independent files are placed
-# below /usr/share/R/ --- breaking the call above. 2.2.1-4 introduced a
-# symbolic link from /usr/share/R/share to /usr/lib/R/share which works
-# on fresh installs but fails on upgrades from older versions of the R
-# package as dpkg cannot replace an existing directory with a softlink.
-#
-# Hence the need for this empty script to provide a place holder until
-# all r-cran-*, r-omegahat-*, r-other-*, ... packages have been updated.
-#
-# Dirk Eddelbuettel <edd at debian.org> 06 Feb 2005
-#
-
-use strict;
-
-print STDERR "Ignoring deprecated call to build-help.pl from postinst or postrm script.\n";
-exit 0;
diff --git a/debian/build-help.pl.patch b/debian/build-help.pl.patch
deleted file mode 100644
index a2854dd..0000000
--- a/debian/build-help.pl.patch
+++ /dev/null
@@ -1,38 +0,0 @@
---- build-help.pl.orig 2005-07-27 15:10:08.000000000 -0500
-+++ build-help.pl 2005-09-28 20:28:08.000000000 -0500
-@@ -17,6 +17,10 @@
- # writing to the Free Software Foundation, Inc., 59 Temple Place,
- # Suite 330, Boston, MA 02111-1307 USA.
-
-+# edd Sep 2005 R 2.2.0 no longer supports (or needs) --htmllists, yet all
-+# of the r-cran-* postinst still call it so we need this patch
-+# implementing a null-op function to show it is recognised.
-+
- use File::Basename;
- use Cwd;
- use Getopt::Long;
-@@ -33,11 +37,12 @@
- ($name = $0) =~ s|.*/||;
-
- @knownoptions = ("rhome:s", "html", "txt", "latex", "example", "debug|d",
-- "dosnames", "help|h", "version|v", "os|OS:s",
-+ "dosnames", "help|h", "version|v", "os|OS:s", "htmllists",
- "index");
- GetOptions (@knownoptions) || usage();
- &R_version($name, $version) if $opt_version;
- &usage() if $opt_help;
-+htmllists() if $opt_htmllists;
-
- $OSdir ="unix";
- $OSdir = $opt_os if $opt_os;
-@@ -268,3 +273,10 @@
- END
- exit 0;
- }
-+
-+sub htmllists {
-+ print STDERR <<END;
-+Ignoring deprecated option --htmllists called from postinst or postrm script.
-+END
-+ exit 0;
-+}
diff --git a/debian/changelog b/debian/changelog
deleted file mode 100644
index 91f8db0..0000000
--- a/debian/changelog
+++ /dev/null
@@ -1,3540 +0,0 @@
-r-base (3.3.0-1) unstable; urgency=medium
-
- * New upstream version released this morning
-
- -- Dirk Eddelbuettel <edd at debian.org> Tue, 03 May 2016 06:05:36 -0500
-
-r-base (3.2.5.20160429-1) unstable; urgency=medium
-
- * Second rc build (r70561) of R 3.3.0 expected for May 03
-
- * debian/control: Remove remaining use of gcc-4.9 on mips (Closes: #818781)
-
- -- Dirk Eddelbuettel <edd at debian.org> Fri, 29 Apr 2016 06:22:06 -0500
-
-r-base (3.2.5.20160428-1) unstable; urgency=low
-
- * Initial rc build (r70556) of R 3.3.0 expected for May 03
-
- -- Dirk Eddelbuettel <edd at debian.org> Thu, 28 Apr 2016 06:42:20 -0500
-
-r-base (3.2.5-1) unstable; urgency=low
-
- * New upstream release made today (as the version scheme in
- 3.2.4-revised created issues for some systems)
-
- * debian/updated_x11_logo.patch: Applied again to src/modules/X11/ files
- devX11.c and rlogo_icon.h to provide the new R logo
-
- -- Dirk Eddelbuettel <edd at debian.org> Thu, 14 Apr 2016 11:58:11 -0500
-
-r-base (3.2.4.20160412-1) unstable; urgency=low
-
- * Fourth beta build (r70470) of R 3.3.0 expected for May 03
-
- * debian/rules: Remove gcc-4.9 invocation for mips (Closes: #818781)
-
- -- Dirk Eddelbuettel <edd at debian.org> Tue, 12 Apr 2016 22:06:54 -0500
-
-r-base (3.2.4.20160411-1) unstable; urgency=low
-
- * Third beta build (r70465) of R 3.3.0 expected for May 03
-
- * debian/control: Remove use of gcc-4.9 on mips (Closes: #818781)
-
- * debian/r-core.shlibs: Removed (Closes: #819343)
- * debian/r-mathlib.shlibs: Ditto
-
- -- Dirk Eddelbuettel <edd at debian.org> Mon, 11 Apr 2016 22:13:07 -0500
-
-r-base (3.2.4.20160406-1) unstable; urgency=medium
-
- * Second beta build (r70427) of R 3.3.0 now expected for May 03
-
- -- Dirk Eddelbuettel <edd at debian.org> Wed, 06 Apr 2016 09:00:27 -0500
-
-r-base (3.2.4.20160331-1) unstable; urgency=medium
-
- * Initial beta build (r70404) of R 3.3.0 expected for April 14
-
- * debian/r-cran.mk: Also remove LICENSE (Closes: #819344)
-
- -- Dirk Eddelbuettel <edd at debian.org> Thu, 31 Mar 2016 19:43:27 -0500
-
-r-base (3.2.4-revised-1) unstable; urgency=medium
-
- * New upstream release this afternoon
-
- * debian/updated_x11_logo.patch: Applied again to src/modules/X11/ files
- devX11.c and rlogo_icon.h to provide the new R logo
-
- -- Dirk Eddelbuettel <edd at debian.org> Wed, 16 Mar 2016 16:40:51 -0500
-
-r-base (3.2.4-1) unstable; urgency=medium
-
- * New upstream version released this morning
-
- * debian/updated_x11_logo.patch: Applied again to src/modules/X11/ files
- devX11.c and rlogo_icon.h to provide the new R logo
-
- -- Dirk Eddelbuettel <edd at debian.org> Thu, 10 Mar 2016 06:04:56 -0600
-
-r-base (3.2.3.20160306-1) unstable; urgency=medium
-
- * Second rc build (r70278) of R 3.2.4 expected for March 10
-
- * debian/rules: Do not install bash_completion in /etc (Closes: #816531)
-
- * debian/updated_x11_logo.patch: Applied again to src/modules/X11/ files
- devX11.c and rlogo_icon.h to provide the new R logo
-
- -- Dirk Eddelbuettel <edd at debian.org> Fri, 04 Mar 2016 06:29:56 -0600
-
-r-base (3.2.3.20160303-1) unstable; urgency=low
-
- * Initial rc build (r70270) of R 3.2.4 expected for March 10
-
- * debian/rules: Adding 'R_TEXI2DVICMD=emulation' to cope with texinfo 6.1
-
- * debian/updated_x11_logo.patch: Applied again to src/modules/X11/ files
- devX11.c and rlogo_icon.h to provide the new R logo
-
- * debian/rules: Commented-out make check with does not find packages
-
- -- Dirk Eddelbuettel <edd at debian.org> Thu, 03 Mar 2016 21:01:10 -0600
-
-r-base (3.2.3-6) unstable; urgency=low
-
- * Rebuilding to now use openjdk-8-jdk (rather than openjdk-7-jdk) as
- keep in sync with the change at the default-jdk package
-
- * debian/rules: Added explicit 'cd doc/manual && $(MAKE) html)'
-
- -- Dirk Eddelbuettel <edd at debian.org> Thu, 18 Feb 2016 07:00:11 -0600
-
-r-base (3.2.3-5) unstable; urgency=low
-
- * debian/icon-class-patch/R.desktop: Add trailing ';' in Categories
- (with thanks to Pino Toscano) (Closes: #812475)
-
- -- Dirk Eddelbuettel <edd at debian.org> Sun, 24 Jan 2016 21:04:36 -0600
-
-r-base (3.2.3-4) unstable; urgency=low
-
- * debian/r-base-core.postinst: Don't run mktexlsr
-
- -- Dirk Eddelbuettel <edd at debian.org> Wed, 13 Jan 2016 22:14:27 -0600
-
-r-base (3.2.3-3) unstable; urgency=low
-
- * debian/control: Also add 'gcc-4.9 [mips]' to Depends: for r-base-core
- to ensure compiler is present on installed system (thanks, Sébastien)
-
- * debian/rules: Set 'R_GZIPCMD=gzip -n' to avoid a Lintian warning about
- gzip files with timestamps
-
- * debian/rules: No longer install menu file (and we have a desktop file)
-
- -- Dirk Eddelbuettel <edd at debian.org> Tue, 12 Jan 2016 12:51:40 -0600
-
-r-base (3.2.3-2) unstable; urgency=low
-
- [ Sébastien Villemot ]
- * Use gcc-4.9 to compile C code on mips, as a workaround to a gcc-5 bug.
- (Closes: #810357).
- * Enable back optimization flags on mips and mipsel.
-
- [ Dirk Eddelbuettel ]
- * debian/control: Use Sebastien's patch and add gcc-4.9 for mips
- * debian/rules: Use Sebastien's patch and enforce gcc-4.9 for mips, also
- comment-out remaining suppression of optmization
-
- -- Dirk Eddelbuettel <edd at debian.org> Sun, 10 Jan 2016 21:22:03 -0600
-
-r-base (3.2.3-1.wily.0) wily; urgency=low
-
- * PPA build for Ubuntu 15.10 ("wily")
-
- -- Dirk Eddelbuettel <edd at debian.org> Mon, 14 Dec 2015 13:08:31 -0600
-
-r-base (3.2.3-1) unstable; urgency=low
-
- * New upstream version released this morning
-
- * debian/updated_x11_logo.patch: Applied again to src/modules/X11/ files
- devX11.c and rlogo_icon.h to provide the new R logo
-
- -- Dirk Eddelbuettel <edd at debian.org> Thu, 10 Dec 2015 06:31:10 -0600
-
-r-base (3.2.2.20151203-1) unstable; urgency=low
-
- * Initial rc build (r69731) of R 3.2.3 expected for December 10
-
- * debian/updated_x11_logo.patch: Applied again to src/modules/X11/ files
- devX11.c and rlogo_icon.h to provide the new R logo
-
- -- Dirk Eddelbuettel <edd at debian.org> Thu, 03 Dec 2015 22:08:11 -0600
-
-r-base (3.2.2-1) unstable; urgency=low
-
- * New upstream version released this morning
-
- * debian/updated_x11_logo.patch: Applied to refresh bitmap'ed logo; now
- using second patch with reduced memory footprint and resolution
-
- -- Dirk Eddelbuettel <edd at debian.org> Fri, 14 Aug 2015 05:12:26 -0500
-
-r-base (3.2.1.20150808-1vivid2) vivid; urgency=low
-
- * PPA build for Ubuntu 15.04 ("vivid")
-
- -- Dirk Eddelbuettel <edd at debian.org> Mon, 10 Aug 2015 11:56:02 -0500
-
-r-base (3.2.1.20150808-1) unstable; urgency=low
-
- * Initial rc build (r68909) of R 3.2.2 expected for August 14
-
- * debian/R.bash-completion: Updated from Deepayan's GH repo
-
- * debian/updated_x11_logo.patch: Applied to refresh bitmap'ed logo; now
- using second patch with reduced memory footprint and resolution
-
- -- Dirk Eddelbuettel <edd at debian.org> Sat, 08 Aug 2015 11:24:33 -0500
-
-r-base (3.2.1.20150804-1) unstable; urgency=low
-
- * Initial beta build (r68823) of R 3.2.2 expected for August 14
-
- * debian/updated_x11_logo.patch: Applied to refresh bitmap'ed logo
-
- -- Dirk Eddelbuettel <edd at debian.org> Tue, 04 Aug 2015 16:24:59 -0500
-
-r-base (3.2.1-4) unstable; urgency=low
-
- * src/main/datetime.c: One more change for the additional leapsecond
-
- * debian/control: Add ca-certificates to Depends: for r-base-core to
- support https via method "libcurl"
-
- -- Dirk Eddelbuettel <edd at debian.org> Fri, 03 Jul 2015 03:40:19 -0500
-
-r-base (3.2.1-3) unstable; urgency=low
-
- * src/library/base/R/zdatetime.R: Added additional leap second (also
- included in R-patched and R-devel)
-
- -- Dirk Eddelbuettel <edd at debian.org> Wed, 01 Jul 2015 02:47:09 -0500
-
-r-base (3.2.1-2) unstable; urgency=low
-
- * configure: Apply patch by Martin Michlmayr to ensure texi2any version
- 6 or later is not wrongly rejected as too old (Closes: #790436)
-
- -- Dirk Eddelbuettel <edd at debian.org> Mon, 29 Jun 2015 12:13:49 -0500
-
-r-base (3.2.1-1) unstable; urgency=low
-
- * New upstream version released this morning
-
- -- Dirk Eddelbuettel <edd at debian.org> Thu, 18 Jun 2015 05:06:51 -0500
-
-r-base (3.2.0.20150613-1) unstable; urgency=low
-
- * Initial rc build (r68509) of R 3.2.1 expected for June 18
-
- -- Dirk Eddelbuettel <edd at debian.org> Sat, 13 Jun 2015 12:31:20 -0500
-
-r-base (3.2.0-4) unstable; urgency=low
-
- * debian/rules: Set JAVA_HOME explicitly as suggested in a patch kindly
- supplied by Emmanuel Bourg (Closes: #745098)
-
- -- Dirk Eddelbuettel <edd at debian.org> Sun, 24 May 2015 08:17:33 -0500
-
-r-base (3.2.0-3vivid2) vivid; urgency=low
-
- * PPA build for Ubuntu 14.10 ("vivid")
-
- -- Dirk Eddelbuettel <edd at debian.org> Tue, 12 May 2015 17:11:11 -0500
-
-r-base (3.2.0-3vivid1) utopic; urgency=low
-
- * PPA build for Ubuntu 14.10 ("vivid")
-
- -- Dirk Eddelbuettel <edd at debian.org> Mon, 11 May 2015 06:51:17 -0500
-
-r-base (3.2.0-3) unstable; urgency=low
-
- * debian/control: The r-base-core package now 'Provides: r-api-3' which
- can be used to have r-cran-* depend on a particular API vintage.
- (Closes: #704805)
-
- * debiab/r-cran.mk: Have the build-time API vintage encoded as a Depends
- (with thanks to Julian Gilbey, Charles Plessy, and others for the patch)
-
- * debian/control: Set Standards-Version: to current version
-
- -- Dirk Eddelbuettel <edd at debian.org> Mon, 11 May 2015 06:08:12 -0500
-
-r-base (3.2.0-2) unstable; urgency=low
-
- * debian/r-cran.mk: Apply (modified) patch by Philipp Rinn to set
- built-time (if unset) based on timestamp in debian/changelog
- (Closes: #782764)
-
- -- Dirk Eddelbuettel <edd at debian.org> Tue, 21 Apr 2015 20:38:57 -0500
-
-r-base (3.2.0-1utopic1) utopic; urgency=low
-
- * PPA build for Ubuntu 14.10 ("utopic")
-
- -- Dirk Eddelbuettel <edd at debian.org> Thu, 09 Apr 2015 06:41:55 -0500
-
-r-base (3.2.0-1) unstable; urgency=low
-
- * New upstream version released this morning
-
- -- Dirk Eddelbuettel <edd at debian.org> Thu, 16 Apr 2015 06:04:48 -0500
-
-r-base (3.1.3.20150413-1) unstable; urgency=low
-
- * Third rc build (r68170) of R 3.2.0 expected for April 16
-
- -- Dirk Eddelbuettel <edd at debian.org> Sun, 12 Apr 2015 21:38:03 -0500
-
-r-base (3.1.3.20150410-1) unstable; urgency=low
-
- * Second rc build (r68169) of R 3.2.0 expected for April 16
-
- -- Dirk Eddelbuettel <edd at debian.org> Thu, 09 Apr 2015 19:00:20 -0500
-
-r-base (3.1.3.20150409-1) unstable; urgency=low
-
- * Initial rc build (r68161) of R 3.2.0 expected for April 16
-
- -- Dirk Eddelbuettel <edd at debian.org> Wed, 08 Apr 2015 22:38:30 -0500
-
-r-base (3.1.3-1) unstable; urgency=low
-
- * New upstream version released this morning
-
- * debian/reproducibility-patch/*.patch: Added two patches submitted to R
- upstream and already integrated into upcoming R 3.2.0 releases; these
- help setting a timestamp for the DESCRIPTION file of a) base R package
- via a new env var PKG_BUILT_TIME passed down from debian/rules, and
- also b) r-cran-* package built via r-cran.mk through a new option to
- R CMD INSTALL
-
- -- Dirk Eddelbuettel <edd at debian.org> Mon, 09 Mar 2015 06:32:25 -0500
-
-r-base (3.1.2.20150306-1) unstable; urgency=low
-
- * Second rc build (r67947) of R 3.1.3 expected for March 9
-
- * debian/reproducibility-patch/*.patch: Added two patches submitted to R
- upstream and already integrated into upcoming R 3.2.0 releases; these
- help setting a timestamp for the DESCRIPTION file of a) base R package
- via a new env var PKG_BUILT_TIME passed down from debian/rules, and
- also b) r-cran-* package built via r-cran.mk through a new option to
- R CMD INSTALL
-
- -- Dirk Eddelbuettel <edd at debian.org> Sat, 07 Mar 2015 09:51:04 -0600
-
-r-base (3.1.2.20150304-1) experimental; urgency=low
-
- * Initial rc build (r67940) of R 3.1.3 expected for March 9
-
- * debian/reproducibility-patch/*.patch: Added two patches submitted to R
- upstream and already integrated into upcoming R 3.2.0 releases; these
- help setting a timestamp for the DESCRIPTION file of a) base R package
- via a new env var PKG_BUILT_TIME passed down from debian/rules, and
- also b) r-cran-* package built via r-cran.mk through a new option to
- R CMD INSTALL
-
- -- Dirk Eddelbuettel <edd at debian.org> Wed, 04 Mar 2015 20:01:18 -0600
-
-r-base (3.1.2-3) experimental; urgency=low
-
- * debian/reproducibility-patch/*.patch: Added two patches submitted to R
- upstream and already integrated into upcoming R 3.2.0 releases; these
- help setting a timestamp for the DESCRIPTION file of a) base R package
- via a new env var PKG_BUILT_TIME passed down from debian/rules, and
- also b) r-cran-* package built via r-cran.mk through a new option to
- R CMD INSTALL (Closes: #774031)
-
- * debian/rules: Added support for PKG_BUILT_TIME, but left commented-out
-
- * debian/r-cran.mk: Added support for --built-timestampe, also inactive
-
- -- Dirk Eddelbuettel <edd at debian.org> Mon, 12 Jan 2015 21:03:42 -0600
-
-r-base (3.1.2-2) unstable; urgency=low
-
- * debian/control: Upgrade Build-Depends: to tcl and tk 8.6
- (Closes: #768868)
-
- -- Dirk Eddelbuettel <edd at debian.org> Sun, 09 Nov 2014 14:05:44 -0600
-
-r-base (3.1.2-1) unstable; urgency=low
-
- * New upstream version released this morning
-
- -- Dirk Eddelbuettel <edd at debian.org> Fri, 31 Oct 2014 05:04:22 -0500
-
-r-base (3.1.1.20141024-1) unstable; urgency=low
-
- * Initial rc build (r66864) of R 3.1.2 expected for October 31
-
- -- Dirk Eddelbuettel <edd at debian.org> Sat, 25 Oct 2014 14:16:00 -0500
-
-r-base (3.1.1-1) unstable; urgency=low
-
- * New upstream version released this morning
-
- -- Dirk Eddelbuettel <edd at debian.org> Thu, 10 Jul 2014 05:04:12 -0500
-
-r-base (3.1.0.20140705-1) unstable; urgency=low
-
- * Initial rc build (r66073) of R 3.1.1 expected for July 10
-
- -- Dirk Eddelbuettel <edd at debian.org> Sat, 05 Jul 2014 10:48:31 -0500
-
-r-base (3.1.0-1) unstable; urgency=low
-
- * New upstream version released this morning
-
- -- Dirk Eddelbuettel <edd at debian.org> Thu, 10 Apr 2014 06:04:45 -0500
-
-r-base (3.0.3.20140408-1) unstable; urgency=low
-
- * Third rc build (r65383) of R 3.1.0 expected for April 10
-
- * debian/rules: Also reflect 'dpkg-buildflags --get cppflags'
-
- -- Dirk Eddelbuettel <edd at debian.org> Tue, 08 Apr 2014 14:56:36 -0500
-
-r-base (3.0.3.20140405-1) unstable; urgency=low
-
- * Second rc build (r65382) of R 3.1.0 expected for April 10
-
- -- Dirk Eddelbuettel <edd at debian.org> Sun, 06 Apr 2014 14:09:44 -0500
-
-r-base (3.0.3.20140403-1) unstable; urgency=low
-
- * Initial rc build (r65367) of R 3.1.0 expected for April 10
-
- * debian/rules: Also export ldflags variable
-
- -- Dirk Eddelbuettel <edd at debian.org> Thu, 03 Apr 2014 18:48:57 -0500
-
-r-base (3.0.3.20140331-1) unstable; urgency=low
-
- * Second beta build (r65345) of R 3.1.0 expected for April 10
-
- * debian/control: Added liblzma-dev to Depends: of r-base-dev
- (Closes: #743076)
-
- * debian/rules: Set optimflags, fcflags and ldflags via calls to
- dpkg-buildflags with thanks to Julian Gilbey for the suggestion and
- discussion (Closes: #726913)
-
- -- Dirk Eddelbuettel <edd at debian.org> Mon, 31 Mar 2014 19:58:17 -0500
-
-r-base (3.0.3.20140328-1) unstable; urgency=low
-
- * Initial beta build (r65330) of R 3.1.0 expected for April 10
-
- * debian/R.bash_completion: New version from Deepayan's repository
- * debian/rules: Updated installation command for bash completion
- * debian/control: Added bash-completion to Build-Depends:
-
- -- Dirk Eddelbuettel <edd at debian.org> Fri, 28 Mar 2014 20:05:20 -0500
-
-r-base (3.0.3-1) unstable; urgency=low
-
- * New upstream version released this morning
-
- -- Dirk Eddelbuettel <edd at debian.org> Thu, 06 Mar 2014 06:16:18 -0600
-
-r-base (3.0.2.20140301-1) unstable; urgency=low
-
- * Second rc build (r65090) of R 3.0.3 expected for March 6
-
- * debian/control: Re-enable Java on mips, mipsel as OpenJDK 7 is now
- available for both. Thanks to Niels Thykier for the follow-up.
-
- -- Dirk Eddelbuettel <edd at debian.org> Sat, 01 Mar 2014 11:18:10 -0600
-
-r-base (3.0.2.20140226-1) unstable; urgency=low
-
- * Initial rc build (r65081) of R 3.0.3 expected for March 6
-
- * debian/arm-perl-regexp.patch: Patch no longer needed as the change has
- now been applied upstream
-
- * debian/control: Remove Build-Depends: on texi2html which has been
- deprecated as a standalone package. (Closes: #726947)
- * debian/control: Also remove Suggests: on texi2html for r-base-dev
-
- * debian/control: Added "!mipsel" to the Build-Depends as OpenJDK 7 is
- not available here (cf emails with Niels Thykier in #727805)
-
- -- Dirk Eddelbuettel <edd at debian.org> Wed, 26 Feb 2014 19:59:05 -0600
-
-r-base (3.0.2-1) unstable; urgency=low
-
- * New upstream version released this morning
-
- * debian/arm-perl-regexp.patch: Re-apply ARM patch for regexp
-
- -- Dirk Eddelbuettel <edd at debian.org> Wed, 25 Sep 2013 05:55:00 -0500
-
-r-base (3.0.1.20130919-1) unstable; urgency=low
-
- * Initial rc build (r63954) of R 3.0.2 expected for September 25
-
- * debian/arm-perl-regexp.patch: Re-apply ARM patch for regexp
-
- -- Dirk Eddelbuettel <edd at debian.org> Thu, 19 Sep 2013 21:53:29 -0500
-
-r-base (3.0.1.20130915-1) unstable; urgency=low
-
- * Initial build (r63932) of R 3.0.2 expected for September 25
-
- * Version number scheme reverted to maj.min.pat.date rather than
- maj.min.pat~date as the latex runs of the manuals once again break
- when a tilde is present in the filename -- texi2dvi regression?
-
- * debian/arm-perl-regexp.patch: Re-apply ARM patch for regexp
-
- -- Dirk Eddelbuettel <edd at debian.org> Sun, 15 Sep 2013 08:07:40 -0500
-
-r-base (3.0.1-6) unstable; urgency=low
-
- * debian/r-cran.mk: Undo brown paper bag error and add pipe symbol
-
- * debian/rules: Do not run checks on kFreeBSD as it timed out
-
- -- Dirk Eddelbuettel <edd at debian.org> Mon, 29 Jul 2013 19:35:24 -0500
-
-r-base (3.0.1-5) unstable; urgency=low
-
- * debian/rules: Make a minor debian/rules clean more robust by using
- 'rm -f' instead of plain 'rm'
-
- -- Dirk Eddelbuettel <edd at debian.org> Fri, 26 Jul 2013 09:12:06 -0500
-
-r-base (3.0.1-4) unstable; urgency=low
-
- * debian/rules: Set optimisation to -O2 on kFreeBSD (Closes: #714506)
-
- * debian/r-cran.mk: Minor tweak to regexp in 'make clean' step
-
- * debian/watch: Adjusted path to look in R-3/ directory
-
- -- Dirk Eddelbuettel <edd at debian.org> Fri, 26 Jul 2013 06:24:24 -0500
-
-r-base (3.0.1-3) unstable; urgency=low
-
- * debian/rules: Tweak the pdf creation to overcome error from missing
- r-recommend packages sources which should be ignored, but is not
-
- -- Dirk Eddelbuettel <edd at debian.org> Sat, 25 May 2013 12:41:01 -0500
-
-r-base (3.0.1-2) unstable; urgency=low
-
- * doc/manual: Apply changes from upstream (SVN revs 62773 + 62778) to
- permit compilation of the manuals under both texinfo 4 and texinfo 5
-
- * debian/rules: No longer temporarily disabled moving info files now
- that they build correctly with texinfo 5 as well.
-
- -- Dirk Eddelbuettel <edd at debian.org> Thu, 23 May 2013 21:36:21 -0500
-
-r-base (3.0.1-1) unstable; urgency=low
-
- * New upstream version released this morning
-
- * debian/arm-perl-regexp.patch: Re-apply ARM patch for regexp
-
- * debian/rules: Temporarily disabled moving info files. Not all help
- files will be built as a result. We are looking into this.
-
- -- Dirk Eddelbuettel <edd at debian.org> Thu, 16 May 2013 06:05:31 -0500
-
-r-base (3.0.1~20130512-1) unstable; urgency=low
-
- * Initial rc build (r62731) of R 3.0.1 expected for May 16
-
- * debian/arm-perl-regexp.patch: Re-apply ARM patch for regexp
-
- * debian/rules: Temporarily disabled moving info files
-
- -- Dirk Eddelbuettel <edd at debian.org> Sun, 12 May 2013 14:47:49 -0500
-
-r-base (3.0.0-2) unstable; urgency=low
-
- * debian/r-cran.mk: Revert recent patch to convert '.' in package names
- to '-' as it breaks existing packages (Closes: #704606)
-
- -- Dirk Eddelbuettel <edd at debian.org> Wed, 03 Apr 2013 10:26:43 -0500
-
-r-base (3.0.0-1) unstable; urgency=low
-
- * New upstream version released this morning
-
- * debian/arm-perl-regexp.patch: Re-apply ARM patch for regexp
-
- -- Dirk Eddelbuettel <edd at debian.org> Wed, 03 Apr 2013 05:19:08 -0500
-
-r-base (3.0.0~20130330-1) unstable; urgency=low
-
- * Second rc build (r62448) of R 3.0.0 expected for April 3
-
- * debian/arm-perl-regexp.patch: Re-apply ARM patch for regexp
-
- -- Dirk Eddelbuettel <edd at debian.org> Sat, 30 Mar 2013 23:34:53 -0500
-
-r-base (3.0.0~20130327-1) unstable; urgency=low
-
- * Initial rc build (r62427) of R 3.0.0 expected for April 3
-
- * debian/rules: Explicitly call 'make javaconf;
-
- * debian/arm-perl-regexp.patch: Re-apply ARM patch for regexp
-
- -- Dirk Eddelbuettel <edd at debian.org> Wed, 27 Mar 2013 20:02:31 -0500
-
-r-base (3.0.0~20130324-1) unstable; urgency=low
-
- * Initial beta build (r62384) of R 3.0.0 expected for April 3
-
- * debian/arm-perl-regexp.patch: Re-apply ARM patch for regexp
-
- -- Dirk Eddelbuettel <edd at debian.org> Sun, 24 Mar 2013 08:54:05 -0500
-
-r-base (2.15.3-2) unstable; urgency=low
-
- * debian/r-cran.mk: Applied patch by m.eik michalke to also convert '.'
- in package names to '-'
-
- * debian/arm-perl-regexp.patch: Re-apply ARM patch for regexp from 2.15.2
- with big thanks to Luka Luca Falavigna (Closes: #702427)
-
- -- Dirk Eddelbuettel <edd at debian.org> Sun, 10 Mar 2013 10:04:12 -0500
-
-r-base (2.15.3-1) unstable; urgency=low
-
- * New upstream version released this morning
-
- -- Dirk Eddelbuettel <edd at debian.org> Fri, 01 Mar 2013 06:23:30 -0600
-
-r-base (2.15.3~20130327-1) unstable; urgency=low
-
- * Third rc build (rev62077) of R 2.15.3 expected March 1
-
- * debian/r-base-core.postinst: Fix typo in /etc/R/Renviron mode correction
- creation (thanks again, Don Armstrong!) (Closes: #701774)
-
- -- Dirk Eddelbuettel <edd at debian.org> Wed, 27 Feb 2013 15:09:55 -0600
-
-r-base (2.15.3~20130326-1) unstable; urgency=low
-
- * Second rc build (rev62062) of R 2.15.3 expected March 1
-
- * debian/r-base-core.postinst: Ensure /etc/R/Renviron is created with
- proper 0644 modes (thanks, Don Armstrong!) (Closes: #701774)
-
- -- Dirk Eddelbuettel <edd at debian.org> Tue, 26 Feb 2013 16:56:17 -0600
-
-r-base (2.15.3~20130324-1) unstable; urgency=low
-
- * Initial rc build (rev62054) of R 2.15.3 expected March 1
-
- * debian/rules: No longer patch the R script javareconf
-
- -- Dirk Eddelbuettel <edd at debian.org> Sun, 24 Feb 2013 17:55:56 -0600
-
-r-base (2.15.2-2) unstable; urgency=low
-
- * debian/control: Switch Build-Depends: from libtiff4-dev to libtiff5-dev
-
- * debian/control: Set Standards-Version: to current version
-
- * debian/rules: Generate md5sums for all files (Closes: #700381)
- * debian/r-base-core.postinst: Modied ucf file treatment to avoid
- triggering md5sum changes (with thanks to Andreas Beckman)
-
- -- Dirk Eddelbuettel <edd at debian.org> Sat, 23 Feb 2013 11:11:51 -0600
-
-r-base (2.15.2-1) unstable; urgency=low
-
- * New upstream release
-
- * src/library/tools/R/install.R: Pass "perl = TRUE" parameter to sub()
- function when defining SHLIB_* macros to work-around an erroneus
- string replacement which causes build failures on arm* architectures
- but make the change conditonal on actually being on arm*.
-
- -- Dirk Eddelbuettel <edd at debian.org> Fri, 26 Oct 2012 06:17:58 -0500
-
-r-base (2.15.1-5) unstable; urgency=low
-
- * debian/control: Switch Build-Depends: from openjdk-6-jdk to default-jdk
- (Closes: #684285)
-
- -- Dirk Eddelbuettel <edd at debian.org> Wed, 08 Aug 2012 17:59:25 -0500
-
-r-base (2.15.1-4) unstable; urgency=low
-
- * src/library/tools/R/install.R: Pass "perl = TRUE" parameter to sub()
- really passing it to sub and not to grep (Closes: #679180)
-
- -- Dirk Eddelbuettel <edd at debian.org> Sun, 15 Jul 2012 17:56:35 -0500
-
-r-base (2.15.1-3) unstable; urgency=low
-
- * src/library/tools/R/install.R: Pass "perl = TRUE" parameter to sub()
- and correcting error in logic of patch used in -2. (Closes: #679180)
-
- -- Dirk Eddelbuettel <edd at debian.org> Sun, 15 Jul 2012 16:17:25 -0500
-
-r-base (2.15.1-2) unstable; urgency=low
-
- * src/library/tools/R/install.R: Pass "perl = TRUE" parameter to sub()
- function when defining SHLIB_* macros to work-around an erroneus
- string replacement which causes build failures on arm* architectures
- but make the change conditonal on actually being on arm*.
- With big thanks to Luca Falavigna for finding this fix. (Closes: #679180)
-
- -- Dirk Eddelbuettel <edd at debian.org> Sat, 14 Jul 2012 09:44:24 -0500
-
-r-base (2.15.1-1) unstable; urgency=low
-
- * New upstream version released this morning
-
- * src/X11/*: Applied revised patch by Philip Johnson to to set the X11
- icon and window class for improved desktop experience; patch source
- and support files are in debian/icon-class-patch/.
- * debian/rules: Install icon png file and desktop file from Philip too
- * debian/r-base-core.dirs: Add two directories for icon and desktop
-
- -- Dirk Eddelbuettel <edd at debian.org> Fri, 22 Jun 2012 06:04:05 -0500
-
-r-base (2.15.1~20120617-1) unstable; urgency=low
-
- * Initial rc build (rev59569) of R 2.15.1 expected June 22
-
- * debian/control: Removed dpatch from Depends: for r-base-dev [lintian]
-
- * src/X11/*: Applied patch posted by Philip Johnson to r-devel on June 7
- to set the X11 icon and window class for improved desktop experience
-
- -- Dirk Eddelbuettel <edd at debian.org> Sun, 17 Jun 2012 09:10:43 -0500
-
-r-base (2.15.0-2) unstable; urgency=low
-
- * debian/rules: Test for gcc version 4.7.* and if found, reduce
- optimisation to -O2 as gcc-4.7 fails to build R with -O3
- (as per email discussions with Kurt Hornik of the R Core team)
-
- -- Dirk Eddelbuettel <edd at debian.org> Sun, 22 Apr 2012 09:46:28 -0500
-
-r-base (2.15.0-1) unstable; urgency=low
-
- * New upstream release
-
- -- Dirk Eddelbuettel <edd at debian.org> Fri, 30 Mar 2012 07:42:33 -0500
-
-r-base (2.15.0~20120323-1) unstable; urgency=low
-
- * Initial rc build (58802) of R 2.15.0 expected for March 30
-
- * R/m4, configure: Override bzip2 test for 1.0.6 to let our patched
- 1.0.5 version pass as lintian does not like the embedded library
-
- -- Dirk Eddelbuettel <edd at debian.org> Fri, 23 Mar 2012 07:48:55 -0500
-
-r-base (2.15.0~20120317-1) unstable; urgency=low
-
- * Initial beta build (r58769) of R 2.15.0 expected for March 30
-
- * debian/R.bash_completion: New version from SVN (thanks, Deepayan!)
-
- * R/m4, configure: Override bzip2 test for 1.0.6 to let our patched
- 1.0.5 version pass as lintian does not like the embedded library
-
- -- Dirk Eddelbuettel <edd at debian.org> Sat, 17 Mar 2012 13:27:32 -0500
-
-r-base (2.14.2-3) unstable; urgency=low
-
- * debian/control: Really change Build-Depends: to libpng-dev this time
- * debian/control: Also update Depends: for (virtual) r-base-dev
-
- -- Dirk Eddelbuettel <edd at debian.org> Wed, 07 Mar 2012 14:52:20 -0600
-
-r-base (2.14.2-2) unstable; urgency=low
-
- * debian/control: Change Build-Depends: to libpng-dev (Closes: #662488)
-
- -- Dirk Eddelbuettel <edd at debian.org> Wed, 07 Mar 2012 14:27:40 -0600
-
-r-base (2.14.2-1) unstable; urgency=low
-
- * New upstream release
-
- * R/m4, configure: Override bzip2 test for 1.0.6 to let our patched
- 1.0.5 version pass as lintian does not like the embedded library
-
- * debian/control: Set Standards-Version: to current version
-
- -- Dirk Eddelbuettel <edd at debian.org> Wed, 29 Feb 2012 06:52:40 -0600
-
-r-base (2.14.2~20120222-1) unstable; urgency=low
-
- * Initial rc build (r58449) of R 2.14.2 expected for Feb 29
-
- * R/m4, configure: Override bzip2 test for 1.0.6 to let our patched
- 1.0.5 version pass as lintian does not like the embedded library
-
- * debian/r-cran.mk: Include simple-patchsys.mk only if quilt not used
- as requested by Andreas Tille (Closes: #652456)
-
- * debian/r-cran.mk: Support "R:Depends" expansion in debian/substvars
- as requested by Andreas Tille and Charles Plessy (Closes: #659163)
-
- -- Dirk Eddelbuettel <edd at debian.org> Wed, 22 Feb 2012 08:51:46 -0600
-
-r-base (2.14.1-1) unstable; urgency=low
-
- * New upstream release
-
- * R/m4, configure: Override bzip2 test for 1.0.6 to let our patched
- 1.0.5 version pass as lintian does not like the embedded library
-
- -- Dirk Eddelbuettel <edd at debian.org> Thu, 22 Dec 2011 06:32:24 -0600
-
-r-base (2.14.1~20111215-1) unstable; urgency=low
-
- * Initial rc build (r57901) of R 2.14.1 expected for Dec 22
-
- * R/m4, configure: Override bzip2 test for 1.0.6 to let our patched
- 1.0.5 version pass as lintian does not like the embedded library
-
- * debian/control: Added the battery of texlive-* packages in
- Build-Depends: to 'Suggests:' for r-base-dev so that users can build
- all related documentation too
-
- -- Dirk Eddelbuettel <edd at debian.org> Thu, 15 Dec 2011 21:57:29 -0600
-
-r-base (2.14.0-1) unstable; urgency=low
-
- * New upstream release
-
- * R/m4, configure: Override bzip2 test for 1.0.6 to let our patched
- 1.0.5 version pass as lintian does not like the embedded library
-
- -- Dirk Eddelbuettel <edd at debian.org> Mon, 31 Oct 2011 05:00:31 -0500
-
-r-base (2.14.0~20111027-1) unstable; urgency=low
-
- * Initial rc build (r57443) of R 2.14.0 expected for Oct 31
-
- * R/m4, configure: Override bzip2 test for 1.0.6 to let our patched
- 1.0.5 version pass as lintian does not like the embedded library
-
- * debian/control: Set Standards-Version: to current version
-
- -- Dirk Eddelbuettel <edd at debian.org> Thu, 27 Oct 2011 12:59:54 -0500
-
-r-base (2.14.0~20111021-1) unstable; urgency=low
-
- * Initial beta build (r57355) of R 2.14.0 expected for Oct 31
-
- * R/m4, configure: Override bzip2 test for 1.0.6 to let our patched
- 1.0.5 version pass as lintian does not like the embedded library
-
- -- Dirk Eddelbuettel <edd at debian.org> Fri, 21 Oct 2011 14:56:51 -0500
-
-r-base (2.14.0~20111015-1) unstable; urgency=low
-
- * Initial alpha release (r57258) of R 2.14.0 expected for Oct 31
-
- * debian/rules: Setting '-std=gnu99' as part of CC, not CFLAGS (with
- thanks to Kurt Hornik for the suggestion)
-
- * R/m4, configure: Override bzip2 test for 1.0.6 to let our patched
- 1.0.5 version pass as lintian does not like the embedded library
-
- -- Dirk Eddelbuettel <edd at debian.org> Sun, 16 Oct 2011 00:39:15 -0500
-
-r-base (2.13.2-1) unstable; urgency=low
-
- * New upstream release
-
- * R/m4, configure: Override bzip2 test for 1.0.6 to let our patched
- 1.0.5 version pass as lintian does not like the embedded library
-
- * debian/control: Added 'texlive-fonts-extra' to Build-Depends which R
- 2.14.0 will need for the inconsolate font used in vignettes.
-
- -- Dirk Eddelbuettel <edd at debian.org> Fri, 30 Sep 2011 07:02:04 -0500
-
-r-base (2.13.2~20110922-1) unstable; urgency=low
-
- [ Dirk Eddelbuettel ]
- * First rc build (r57046) of R 2.13.2 expected for Sep 30
- * R/m4, configure: Override bzip2 test for 1.0.6 to let our patched
- 1.0.5 version pass as lintian does not like the embedded library
- * Applied patch by Jonathan Nieder re 'make check' (Closes: #638265)
-
- [ Jonathan Nieder ]
- * debian/rules: Run tests in build target, not the install target (since
- they do not require root privileges).
- * debian/rules: Do not run tests when DEB_BUILD_OPTIONS contains
- "nocheck".
-
- -- Dirk Eddelbuettel <edd at debian.org> Fri, 23 Sep 2011 07:23:10 -0500
-
-r-base (2.13.1-1) unstable; urgency=low
-
- * New upstream release
-
- * R/m4, configure: Override bzip2 test for 1.0.6 to let our patched
- 1.0.5 version pass as lintian does not like the embedded library
-
- -- Dirk Eddelbuettel <edd at debian.org> Fri, 08 Jul 2011 06:17:17 -0500
-
-r-base (2.13.0-4) unstable; urgency=low
-
- * debian/r-cran.mk: Make call to xvfb-run more robust by adding '-a'
- option to allow automatic switching to free virtual server; with thanks
- to Salvatore Bonaccorso for the suggestions (Closes: #630869)
-
- -- Dirk Eddelbuettel <edd at debian.org> Wed, 22 Jun 2011 08:59:55 -0500
-
-r-base (2.13.0-3) unstable; urgency=low
-
- * debian/control: Switch Build-Depends: (and Depends: for r-base-dev)
- from libjpeg62-dev to libjpeg-dev for libjpeg8 transition -- with
- thanks to Bill Allombert for the heads-up (Closes: #629978)
-
- -- Dirk Eddelbuettel <edd at debian.org> Thu, 09 Jun 2011 17:43:27 -0500
-
-r-base (2.13.0-2) unstable; urgency=low
-
- * debian/control: Add 'Depends: cdbs' to r-base-dev so that the r-cran-*
- packages do not need to depend on it individually; it is a feature
- of the r-cran.mk script sourced from r-base-dev (Closes: #627831)
-
- -- Dirk Eddelbuettel <edd at debian.org> Tue, 24 May 2011 19:28:19 -0500
-
-r-base (2.13.0-1) unstable; urgency=low
-
- * New upstream version released this morning
-
- * R/m4, configure: Override bzip2 test for 1.0.6 to let our patched
- 1.0.5 version pass as lintian does not like the embedded library
-
- -- Dirk Eddelbuettel <edd at debian.org> Wed, 13 Apr 2011 06:24:26 -0500
-
-r-base (2.13.0~20110407-1) unstable; urgency=low
-
- * First rc build (r55373) of R 2.13.0 expected for Apr 13
-
- * R/m4, configure: Override bzip2 test for 1.0.6 to let our patched
- 1.0.5 version pass as lintian does not like the embedded library
-
- -- Dirk Eddelbuettel <edd at debian.org> Fri, 08 Apr 2011 12:10:17 -0500
-
-r-base (2.13.0~20110401-1) unstable; urgency=low
-
- * First beta build (r55246) of R 2.13.0 expected for Apr 13
-
- * R/m4, configure: Override bzip2 test for 1.0.6 to let our patched
- 1.0.5 version pass as lintian does not like the embedded library
-
- -- Dirk Eddelbuettel <edd at debian.org> Sat, 02 Apr 2011 07:38:54 -0500
-
-r-base (2.13.0~20110324-1) unstable; urgency=low
-
- * Second alpha build (r55004) of R 2.13.0 expected for Apr 13
-
- * R/m4, configure: Override bzip2 test for 1.0.6 to let our patched
- 1.0.5 version pass as lintian does not like the embedded library
-
- -- Dirk Eddelbuettel <edd at debian.org> Fri, 25 Mar 2011 07:15:21 -0500
-
-r-base (2.13.0~20110316-1) unstable; urgency=low
-
- * Initial alpha release (r54827) of R 2.13.0 expected for Apr 13
-
- * R/m4, configure: Override bzip2 test for 1.0.6 to let our patched
- 1.0.5 version pass as lintian does not like the embedded library
-
- -- Dirk Eddelbuettel <edd at debian.org> Thu, 17 Mar 2011 08:05:43 -0500
-
-r-base (2.12.2-1) unstable; urgency=low
-
- * New upstream version released this morning
-
- * R/m4, configure: Override bzip2 test for 1.0.6 to let our patched
- 1.0.5 version pass as lintian does not like the embedded library
-
- -- Dirk Eddelbuettel <edd at debian.org> Fri, 25 Feb 2011 07:16:46 -0600
-
-r-base (2.12.2~20110218-1) unstable; urgency=low
-
- * First rc built (r54487) of R 2.12.2 expected for Feb 25
-
- * R/m4, configure: Override bzip2 test for 1.0.6 to let our patched
- 1.0.5 version pass as lintian does not like the embedded library
-
- -- Dirk Eddelbuettel <edd at debian.org> Sat, 19 Feb 2011 10:50:12 -0600
-
-r-base (2.12.2~20110215-1) unstable; urgency=low
-
- * First beta built (r54439) of R 2.12.2 expected for Feb 25
-
- * R/m4, configure: Override bzip2 test for 1.0.6 to let our patched
- 1.0.5 version pass as lintian does not like the embedded library
-
- -- Dirk Eddelbuettel <edd at debian.org> Tue, 15 Feb 2011 17:45:22 -0600
-
-r-base (2.12.1-1) unstable; urgency=low
-
- * New upstream version released this morning
-
- * R/m4, configure: Override bzip2 test for 1.0.6 to let our patched
- 1.0.5 version pass as lintian does not like the embedded library
-
- -- Dirk Eddelbuettel <edd at debian.org> Thu, 16 Dec 2010 06:15:09 -0600
-
-r-base (2.12.1~20101208-1) unstable; urgency=low
-
- * First rc built (r53817) of R 2.12.1 expected for Dec 16
-
- * R/m4, configure: Override bzip2 test for 1.0.6 to let our patched
- 1.0.5 version pass as lintian does not like the embedded library
-
- -- Dirk Eddelbuettel <edd at debian.org> Thu, 09 Dec 2010 06:44:18 -0600
-
-r-base (2.12.0-1) unstable; urgency=low
-
- * New upstream version released this morning
-
- * As a new major release, this will go to unstable despite the freeze
-
- -- Dirk Eddelbuettel <edd at debian.org> Fri, 15 Oct 2010 05:11:09 -0500
-
-r-base (2.12.0~20101007-1) experimental; urgency=low
-
- * First rc built (r53048) of R 2.12.0 expected for Oct 15
-
- * Distribution still set to 'experimental' as release freeze is ongoing
-
- -- Dirk Eddelbuettel <edd at debian.org> Thu, 07 Oct 2010 20:44:50 -0500
-
-r-base (2.11.1-7) unstable; urgency=low
-
- * debian/control: Add 'liblzma-dev' to Build-Depends (Closes: #599120)
-
- -- Dirk Eddelbuettel <edd at debian.org> Mon, 04 Oct 2010 16:12:19 -0500
-
-r-base (2.12.0~20101002-1) experimental; urgency=low
-
- * First beta built (r53048) of R 2.12.0 expected for Oct 15
-
- * Distribution still set to 'experimental' as release freeze is ongoing
-
- -- Dirk Eddelbuettel <edd at debian.org> Sat, 02 Oct 2010 14:27:42 -0500
-
-r-base (2.12.0~20100928-1) experimental; urgency=low
-
- * Third alpha built (r53048) of R 2.12.0 expected for Oct 15
-
- * Distribution still set to 'experimental' as release freeze is ongoing
-
- * debian/control: Added liblzma-dev to Build-Depends
-
- -- Dirk Eddelbuettel <edd at debian.org> Tue, 28 Sep 2010 14:59:37 -0500
-
-r-base (2.12.0~20100924-1) experimental; urgency=low
-
- * Second alpha built (r52983) of R 2.12.0 expected for Oct 15
-
- * Distribution still set to 'experimental' as release freeze is ongoing
-
- -- Dirk Eddelbuettel <edd at debian.org> Fri, 24 Sep 2010 09:28:16 -0500
-
-r-base (2.12.0~20100917-1) experimental; urgency=low
-
- * Initial alpha release (r52529) of R 2.12.0 expected for Oct 15
-
- * Distribution set to 'experimental' as release freeze is ongoing
-
- * R/m4, configure: Check zlib version for 1.2.3.4, not 1.2.3
-
- -- Dirk Eddelbuettel <edd at debian.org> Fri, 17 Sep 2010 06:52:33 -0500
-
-r-base (2.11.1-6) unstable; urgency=low
-
- * debian/control: Add [!mips] to the list architectures that do not have
- a Build-Depends: on openjdk-6-jdk (per request of release team)
-
- -- Dirk Eddelbuettel <edd at debian.org> Sun, 15 Aug 2010 08:09:11 -0500
-
-r-base (2.11.1-5) unstable; urgency=low
-
- * debian/rules: Also set ${cflags}, ${cxxflags}, ${fcflags} during
- configure in light of #590126
- * debian/rules: Set FCFLAGS as well as FFLAGS
-
- -- Dirk Eddelbuettel <edd at debian.org> Fri, 06 Aug 2010 07:10:57 -0500
-
-r-base (2.11.1-4) unstable; urgency=low
-
- * debian/rules: Impose '-g0' for mips and mipsel in light of #590126
-
- -- Dirk Eddelbuettel <edd at debian.org> Thu, 05 Aug 2010 13:06:00 -0500
-
-r-base (2.11.1-3) unstable; urgency=low
-
- * m4/R.m4: Apply patch Arnaud Patard to suppress -g flag during
- configure which currently upsets tcl/tk on the mips and mipsel
- platform (see the release-critical bug report #590126).
- A big thanks to Arnaud for the patch and detailed analysis.
-
- -- Dirk Eddelbuettel <edd at debian.org> Sun, 01 Aug 2010 13:50:21 -0500
-
-r-base (2.11.1-2) unstable; urgency=low
-
- * debian/rules: Re-apply arm fixes from 2.11.0-2 below which
- inadvertently slipped. Thanks once again to Modestas for
- spotting this. (Closes: #581237)
-
- -- Dirk Eddelbuettel <edd at debian.org> Thu, 03 Jun 2010 17:19:17 -0500
-
-r-base (2.11.1-1) unstable; urgency=low
-
- * New upstream version released this morning
-
- -- Dirk Eddelbuettel <edd at debian.org> Mon, 31 May 2010 06:52:52 -0500
-
-r-base (2.11.1~20100525-1) unstable; urgency=low
-
- * Release Candidate (r52102) of R 2.11.1 expected for May 31
-
- -- Dirk Eddelbuettel <edd at debian.org> Wed, 26 May 2010 06:48:15 -0500
-
-r-base (2.11.0-2) unstable; urgency=low
-
- * debian/rules: Withdraw old hack to let armel build without system blas
- and lapack as these now work. With special thanks to Modestas Vainius
- for spotting this and testing the fix. (Closes: #581237)
-
- * debian/rules: Also withdraw setting of radical -O0 -g0 on armel
- which was once needed due to poor Fortran compiler performance.
- Once again thanks to Modestas Vainius for spotting and checking!
-
- -- Dirk Eddelbuettel <edd at debian.org> Wed, 12 May 2010 21:25:38 -0500
-
-r-base (2.11.0-1) unstable; urgency=low
-
- * New upstream version released this morning
-
- -- Dirk Eddelbuettel <edd at debian.org> Thu, 22 Apr 2010 06:29:47 -0500
-
-r-base (2.11.0~20100419-1) unstable; urgency=low
-
- * Initial rc release (r51778) of R 2.11.0 expected for April 22
-
- -- Dirk Eddelbuettel <edd at debian.org> Tue, 20 Apr 2010 10:04:38 -0500
-
-r-base (2.11.0~20100409-1) unstable; urgency=low
-
- * Initial beta release (r51661) of R 2.11.0 expected for April 22
-
- -- Dirk Eddelbuettel <edd at debian.org> Sat, 10 Apr 2010 14:35:56 -0500
-
-r-base (2.11.0~20100402-1) unstable; urgency=low
-
- * Initial alpha release (r51564) of R 2.11.0 expected for April 22
-
- * debian/control: Fix typo / editing mistake in Description for r-base
- (Closes: #563234)
-
- * debian/rules: Add softlink from /usr/lib/R/lib/libR.so into /usr/lib
- to make the R library visible as /etc/ld.so.conf.d/ is no longer used
- (Closes: #575913)
-
- * debian/control: Set Standards-Version: to current version
-
- -- Dirk Eddelbuettel <edd at debian.org> Sat, 03 Apr 2010 08:44:29 -0500
-
-r-base (2.10.1-2) unstable; urgency=low
-
- * configure: Apply patch by Nobuhiro Iwamatsu to allow for builds
- on the sh4 architecture (Closes: #561180)
-
- -- Dirk Eddelbuettel <edd at debian.org> Mon, 14 Dec 2009 21:30:07 -0600
-
-r-base (2.10.1-1) unstable; urgency=low
-
- * New upstream version released this morning
-
- * debian/control: For r-recommended, replace r-cran-vr with the four
- unbundled packages r-cran-{mass,class,nnet,spatial}
-
- -- Dirk Eddelbuettel <edd at debian.org> Mon, 14 Dec 2009 06:14:03 -0600
-
-r-base (2.10.1~20091210-1) unstable; urgency=low
-
- * New upstream release candidate for R 2.10.1 expected for December 14
-
- -- Dirk Eddelbuettel <edd at debian.org> Thu, 10 Dec 2009 13:42:48 -0600
-
-r-base (2.10.1~20091206-1) unstable; urgency=low
-
- * New upstream beta release for R 2.10.1 expected for December 14
-
- -- Dirk Eddelbuettel <edd at debian.org> Sun, 06 Dec 2009 15:27:49 -0600
-
-r-base (2.10.0-2) unstable; urgency=low
-
- * debian/control: Replace Build-Depends: on xpdf-reader with xdg-utils
- with thanks to Moritz Muehlenhoff
-
- * debian/r-base-core.postinst: Switch from texhash to mktexlsr with
- thanks to Julian Gilbey (Closes: #555187)
-
- * debian/control: Fix grammar error by switching to 'This package provides'
- in five of the package entries (which still does not quite call for this
- somewhat inflationary use of automated bug filing seen here ...)
- (Closes: #557842 #557843 #557844 #557845 #557846 #557847 #55849)
-
- -- Dirk Eddelbuettel <edd at debian.org> Sat, 28 Nov 2009 03:37:58 -0600
-
-r-base (2.10.0-1) unstable; urgency=low
-
- * New upstream version released this morning
-
- -- Dirk Eddelbuettel <edd at debian.org> Mon, 26 Oct 2009 07:31:30 -0500
-
-r-base (2.10.0~20091019-1) unstable; urgency=low
-
- * First release candidate of R 2.10.0 expected for October 26
-
- * debian/rules: Configure with R_BROWSER=xdg-open as default HTML browser
-
- * debian/control: As html documentation is now dynamically generated, the
- r-doc-html package is no longer six mb in size and can be promoted from
- Suggested: to Recommended: (thanks to Michael Rutter for the suggestion).
-
- * debian/control: Add Conflicts/Provides/Replaces for r-base-core
- on r-base-latex to uninstall existing (and now redundant) packages.
-
- -- Dirk Eddelbuettel <edd at debian.org> Mon, 19 Oct 2009 10:15:03 -0500
-
-r-base (2.10.0~20091013-1) unstable; urgency=low
-
- * First beta release of R 2.10.0 expected for October 26
-
- * debian/rules: No longer call 'make html' or 'make help' as starting
- with R 2.10.0, documentation is now rendered on-demand by the R engine
- * debian/rules: No longer fix modes on help-{links,print}.sh as these
- script are no longer shipped
-
- * debian/control: Removed entry for package r-base-latex
-
- -- Dirk Eddelbuettel <edd at debian.org> Tue, 13 Oct 2009 12:41:48 -0500
-
-r-base (2.9.2-4) unstable; urgency=low
-
- * configure: Re-insert xdg-open into list of pdf viewers tested
- for at build time -- thanks to Sebastian P. Luque for the heads-up!
-
- -- Dirk Eddelbuettel <edd at debian.org> Tue, 06 Oct 2009 17:21:20 -0500
-
-r-base (2.9.2-3) unstable; urgency=low
-
- * debian/control: Also change Depends: in r-base-dev from
- from 'libreadline5-dev' to 'libreadline-dev'
-
- -- Dirk Eddelbuettel <edd at debian.org> Wed, 16 Sep 2009 20:56:57 -0500
-
-r-base (2.9.2-2) unstable; urgency=low
-
- * debian/control: As requested by Matthias Klose, change
- Build-Depends: from 'libreadline5-dev' to 'libreadline-dev'
-
- * debian/rules: Soft link from /usr/lib/R/COPYING against GPL-2
- instead of GPL, with thanks to Isaac for spotting this.
-
- * debian/control: Set Standards-Version: to current version
-
- * debian/control: Add Depends: for r-doc-info on
- 'dpkg (>= 1.15.4) | install-info'
-
- * debian/rules: No longer install /etc/ld.so.conf.d/libR.conf
-
- * debian/r-base-core.postinst: Call paperconf without prepended path
-
- -- Dirk Eddelbuettel <edd at debian.org> Sun, 13 Sep 2009 20:27:45 -0500
-
-r-base (2.9.2-1) unstable; urgency=low
-
- * New upstream version released this morning
-
- * r-doc-{info,html}.{postinst,prerm}: Omit calls to install-docs
- and install-info which is now handled by dpkg triggers.
- * debian/control: Builds-Depends: on debhelper (>= 7.2.3)
-
- * debian/control: Add 'xdg-utils' to Depends: for r-base-core
-
- * debian/r-cran.mk: Improved find command in clean target
-
- -- Dirk Eddelbuettel <edd at debian.org> Mon, 24 Aug 2009 06:15:24 -0500
-
-r-base (2.9.1-2) unstable; urgency=low
-
- * Re-activated Java support using an updated ca-certificates-java
- package by Matthias Klose -- Thanks!
- * debian/control: Build-Depends: on openjdk-6-jdk added back in
-
- * debian/control: Update Standards-Version: to current value.
-
- -- Dirk Eddelbuettel <edd at debian.org> Mon, 29 Jun 2009 19:20:13 -0500
-
-r-base (2.9.1-1) unstable; urgency=low
-
- * New upstream version released this morning
-
- * configure,m4/R.m4: Add xdg-open to set of pdf viewers checked by configure
- (and this change has been committed upstream for 2.10.0 as well).
-
- * As of this morning, the Debian Java toolchain is broken (#534520) so
- support for Java is disabled by temporarily removing
- openjdk-6-jdk [!arm !hppa !kfreebsd-i386 !kfreebsd-amd64 !hurd-i386]
- from Build-Depends: --- a new upload will be provided once this problem
- is fixed.
-
- -- Dirk Eddelbuettel <edd at debian.org> Fri, 26 Jun 2009 09:34:58 -0500
-
-r-base (2.9.1~20090621-1) unstable; urgency=low
-
- * First beta release of R 2.9.1 which should be released on June 26
-
- * configure,m4/R.m4: Add xdg-open to set of pdf viewers checked by configure
-
- -- Dirk Eddelbuettel <edd at debian.org> Sun, 21 Jun 2009 21:21:25 -0500
-
-r-base (2.9.1~20090618-1) unstable; urgency=low
-
- * First beta release of R 2.9.1 which should be released on June 26
-
- * debian/control: Switched (Build-)Depends: from xpdf-reader to xdg-utils;
- pdf files will now be opened with xdg-open to reflect desktop choices.
-
- * debian/README.Atlas: Further editing, added test script
-
- * debian/r-cran.mk: Do not remove src/Makevars.in in clean step as this was
- seen to upset some packages when used by cran2deb for all of CRAN
-
- -- Dirk Eddelbuettel <edd at debian.org> Thu, 18 Jun 2009 07:00:11 -0500
-
-r-base (2.9.0-4) unstable; urgency=low
-
- * debian/r-cran.mk: Applied suggestion by Julian Gilbey to correct
- accidental lowercasing of CRAN package names which can prevent removal
- ot extra license files (Closes: #531224)
-
- * debian/README.Atlas: Updated to current packages (Closes: #531223)
-
- * debian/r-cran.mk: Small correction to previously added 'clean' target
-
- -- Dirk Eddelbuettel <edd at debian.org> Sun, 31 May 2009 21:15:27 -0500
-
-r-base (2.9.0-3) unstable; urgency=low
-
- * debian/r-cran.mk: Applied patch by Steffen Moeller that adds a
- 'clean' target which is useful if one builds outside of pbuilder.
-
- -- Dirk Eddelbuettel <edd at debian.org> Sat, 16 May 2009 18:07:02 -0500
-
-r-base (2.9.0-2) unstable; urgency=low
-
- * debian/r-base-core.prerm: Remove /etc/R/Renviron on remove or purge to
- not leave unowned files around. Also make sure ucf forgets all about it.
- Special Thanks! to Holger Levsen. (Closes: #527618)
-
- -- Dirk Eddelbuettel <edd at debian.org> Sun, 10 May 2009 19:00:28 -0500
-
-r-base (2.9.0-1) unstable; urgency=low
-
- * New upstream version released this morning
-
- * debian/rules: Turn optimisation back to -O3 on alpha (as elsewhere)
- with thanks to Kurt Roeckx for applying a fix to gcc
-
- -- Dirk Eddelbuettel <edd at debian.org> Fri, 17 Apr 2009 06:56:48 -0500
-
-r-base (2.9.0~20090410-1) unstable; urgency=low
-
- * First release candidate of R 2.9.0 expected for April 17
-
- * debian/rules: Lower optimisation to -O2 on alpha
-
- -- Dirk Eddelbuettel <edd at debian.org> Sat, 11 Apr 2009 16:10:24 -0500
-
-r-base (2.9.0~20090403-1) unstable; urgency=low
-
- * First beta release of R 2.9.0 expected for April 17
-
- -- Dirk Eddelbuettel <edd at debian.org> Sat, 04 Apr 2009 10:52:59 -0500
-
-r-base (2.9.0~20090327-1) unstable; urgency=low
-
- * Second alpha release of R 2.9.0 expected for April 17
-
- * debian/control: Update Standards-Version: to current value.
-
- -- Dirk Eddelbuettel <edd at debian.org> Sat, 28 Mar 2009 13:53:36 -0500
-
-r-base (2.9.0~20090320-1) unstable; urgency=low
-
- * Initial alpha release of R 2.9.0 expected for April 17
-
- * debian/control: Changed Section: of r-base, r-base-core, and r-base-dev to
- new section 'gnu-r'
-
- * debian/control: Add r-cran-matrix to r-recommended as the upstream package
- 'Matrix' is part of the core R release as of 2.9.0.
-
- * debian/control: Change Depends: on 'ucf' to 'ucf (>= 3.0)' (Closes: #516508)
-
- * debian/rules: No longer apply build-help.pl.patch, and no longer install
- build-help.pl as the R help system was rewritten (mostly in R itself).
-
- * debian/{control,compat}: Switch to debhelper compat level 7, and hence
- set Build-Depends: on 'debhelper (>= 7.0.0)'
-
- * debian/r-doc-html.{postinst,prerm}: Created manually as debhelper seemingly
- stopped creating these from dh_installdocs
-
- -- Dirk Eddelbuettel <edd at debian.org> Sat, 21 Mar 2009 13:06:30 -0500
-
-r-base (2.8.1-2) unstable; urgency=low
-
- * debian/control: Add another Build-Depends: exclusion for the
- 'kfreebsd-i386 kfreebsd-amd64 hurd-i386' architecture to openjdk-6-jdk.
- Thanks to Petr Salinger for the heads-up. (Closes: 512324)
-
- -- Dirk Eddelbuettel <edd at debian.org> Mon, 19 Jan 2009 12:40:24 -0600
-
-r-base (2.8.1-1) unstable; urgency=low
-
- * New upstream version released today
-
- -- Dirk Eddelbuettel <edd at debian.org> Mon, 22 Dec 2008 20:10:19 -0600
-
-r-base (2.8.1~20081219-1) unstable; urgency=low
-
- * Updated to Dec 19 release candidate of R 2.8.1 expected for Dec 22
-
- * r-doc-pdf expected to be empty due to the tex/texinfo bug below
-
- * debian/control: Change Build-Depends: on openjdk-6-jdk to
- 'openjdk-6-jdk [!arm !hppa]' as arm and hppa do not have one.
-
- -- Dirk Eddelbuettel <edd at debian.org> Sat, 20 Dec 2008 09:26:38 -0600
-
-r-base (2.8.1~20081212) unstable; urgency=low
-
- * Initial beta release of R 2.8.1 expected for Dec 22
- * Fixes 'dev2bitmap fails with gsexe related error' (Closes: #505698)
-
- * As #487974 is still open, the r-doc-pdf documentation package is again
- almost empty due to the tilde in the Debian revision number which breaks
- the texinfo-to-pdf conversions. Users are advised to hold onto the
- 2.8.0 version of the package until 2.8.1 comes out in ten days.
-
- * debian/control: Added 'openjdk-6-jdk' to Build-Depends:
- * debian/r-cran.mk: Removed commented-out code that attempted to
- configure Java at package build-time, we now do that at R builds
-
- * debian/rules: Set softlinks for COPYING and COPYING.LIB to GPL-2 and
- LGPL-2.1, respectively, to ensure the correct versions are linked.
- Thanks to Deepayan Sarkar for the suggestion.
-
- -- Dirk Eddelbuettel <edd at debian.org> Fri, 12 Dec 2008 11:36:22 -0600
-
-r-base (2.8.0-1) unstable; urgency=low
-
- * New upstream version released a few hours ago
-
- -- Dirk Eddelbuettel <edd at debian.org> Mon, 20 Oct 2008 06:07:59 -0500
-
-r-base (2.8.0~20081013-1) unstable; urgency=low
-
- * Initial 'Release Candidate' package of R 2.8.0 expected for October 20
-
- -- Dirk Eddelbuettel <edd at debian.org> Mon, 13 Oct 2008 10:07:47 -0500
-
-r-base (2.8.0~20081006-1) unstable; urgency=low
-
- * Initial 'Beta' package of R 2.8.0 expected to be released on October 20
-
- * debian/control: Updated Description: text; with thanks to Doug Bates
- and Martin Maechler for helpful suggestions and comments.
-
- -- Dirk Eddelbuettel <edd at debian.org> Sun, 05 Oct 2008 15:15:44 -0500
-
-r-base (2.7.2-2) unstable; urgency=low
-
- * debian/r-cran.mk: Switch from cdbs snippet dpatch.mk to simple-patchsys.mk
-
- * debian/{Renviron.site,Rprofile.site}: Install simple stanza files with
- example usage into /etc/R/ with softlinks from $R_HOME/etc as for the
- other config files. Thanks to Christian Hudon for the suggestion.
- (Closes: #498520)
-
- * src/library/base/R/dcf.R: Correct regexp for Debian-style control field
- writing as per the one-line patch by Charles Blundell to r-devel / r-bugs
- which should help us in cran2deb as well
-
- * debian/control: Switched Build-Depends from tcl/tk 8.4 to 8.5
-
- -- Dirk Eddelbuettel <edd at debian.org> Sat, 13 Sep 2008 17:07:31 -0500
-
-r-base (2.7.2-1) unstable; urgency=low
-
- * New upstream version released a few hours ago
-
- * src/scripts/javareconf: Replace use of /tmp with result of
- `mktemp -t -d` to avoid symlink attacks (Closes: #496418)
-
- -- Dirk Eddelbuettel <edd at debian.org> Mon, 25 Aug 2008 06:37:14 -0500
-
-r-base (2.7.2~20080816-1) unstable; urgency=low
-
- * Initial 'beta' release of R 2.7.2 expected to be released on August 25
-
- -- Dirk Eddelbuettel <edd at debian.org> Sun, 17 Aug 2008 10:15:43 -0500
-
-r-base (2.7.1-2) unstable; urgency=low
-
- * debian/r-doc-{info,html,pdf}: Added R-ints and R-admin manuals
- * debian/r-doc-html.doc-base.ints: Added new doc-base file
-
- * debian/rules: Exclude usr/lib/R/etc/Renviron.ucf from md5sums
- (Closes: #491637)
-
- -- Dirk Eddelbuettel <edd at debian.org> Mon, 21 Jul 2008 06:42:27 -0500
-
-r-base (2.7.1-1) unstable; urgency=low
-
- * New upstream version released a few hours ago
-
- -- Dirk Eddelbuettel <edd at debian.org> Mon, 23 Jun 2008 06:10:26 -0500
-
-r-base (2.7.1~20080621-1) unstable; urgency=low
-
- * New 'rc' release of R 2.7.1 expected to be released on June 23
-
- * debian/{rules,r-base-core.postinst}: Changed to have /etc/R/Renviron
- be handled by ucf, with thanks to Aaron M. Ucko (Closes: #476420)
- * debian/control: Added Depends: on ucf to r-base-core
-
- * debian/control: Build-Depends updated from 'x-dev, xbase-clients' to
- 'x11proto-core-dev, xauth'
-
- -- Dirk Eddelbuettel <edd at debian.org> Sat, 21 Jun 2008 11:26:48 -0500
-
-r-base (2.7.1~20080614-1) unstable; urgency=low
-
- * Initial 'beta' release of R 2.7.1 expected to be released on June 23
-
- * debian/control: Added Homepage: field as suggested by Andreas Tille
- (Closes: #481058)
-
- -- Dirk Eddelbuettel <edd at debian.org> Sat, 14 Jun 2008 11:45:22 -0500
-
-r-base (2.7.0-1) unstable; urgency=low
-
- * New upstream version released a few hours ago
-
- -- Dirk Eddelbuettel <edd at debian.org> Tue, 22 Apr 2008 08:40:44 -0500
-
-r-base (2.7.0~20080416-1) unstable; urgency=low
-
- * Second 'rc' release of R 2.7.0 expected to be released on April 22
-
- * debian/rules: Explicit rebuild and copying of Rscript to prevent seepage
- of a bad R_HOME setting from build-time (Closes: #475343)
-
- * debian/control: Add new package 'r-base-core-dbg' with stripped debugging
- symbols; thanks to Soeren for the suggestion (Closes: #476345)
- * debian/rules: Modified dh_strip call accordingly
-
- -- Dirk Eddelbuettel <edd at debian.org> Wed, 16 Apr 2008 13:01:21 -0500
-
-r-base (2.7.0~20080415-1) unstable; urgency=low
-
- * Initial 'rc' release of R 2.7.0 expected to be released on April 22
-
- * debian/r-doc.html.doc-base.*: Changed section to 'Science/Data Analysis'
-
- * debian/control: Added 'xvfb, xbase-clients, xfonts-base' to Build-Depends:
- * debian/rules: Change 'make check' into 'xvfb-run make check-all'
-
- * debian/control: Replace 'tetex-bin, tetex-extra' in Build-Depends: with
- 'texlive-base, texlive-latex-base, texlive-generic-recommended,
- texlive-fonts-recommended, texlive-extra-utils, texlive-latex-recommended,
- texlive-latex-extra, texinfo, texi2html'
-
- -- Dirk Eddelbuettel <edd at debian.org> Tue, 15 Apr 2008 14:32:08 -0500
-
-r-base (2.7.0~20080408-1) unstable; urgency=low
-
- * Initial 'beta' release of R 2.7.0 expected to be released on April 22
-
- * debian/rules: Configure and build with Debian's lapack
- * debian/control: Upgraded Build-Depends: to liblapack-dev (>= 3.1.1)
-
- * debian/rules: Add new configure options --with-cairo and --with-pango
- * debian/control: Added Build-Depends: on 'libpango1.0-dev, libcairo2-dev'
- * debian/control: Revert Depends: for 'quasi-virtual' r-base-dev to
- 'libblas-dev | libatlas-base-dev, liblapack-dev | libatlas-base-dev'
- as the transition to gfortran-built lapack/blas/atlas is complete.
- (Closes: #473695)
-
- * debian/control: r-recommended no longer Depends: on r-cran-rcompgen as
- per upstream having integrated the rcomgen packaged into r-base-core.
- * debian/control: Added Conflicts/Provides/Replaces for r-base-core
- on r-cran-rcompgen to uninstall existing (and now redundant) packages.
-
- * debian/control: Added Build-Depends on 'libtiff4-dev'
-
- -- Dirk Eddelbuettel <edd at debian.org> Tue, 08 Apr 2008 21:24:42 -0500
-
-r-base (2.6.2-2) unstable; urgency=low
-
- * debian/{rules,control}: Reverting the use of Debian's lapack as we got
- a SVD-related bug report with a day -- thanks, Ben! (Closes: #464833)
- - remove 'liblapack-dev' from Build-Depends
- - call configure with
-
- -- Dirk Eddelbuettel <edd at debian.org> Sat, 09 Feb 2008 10:05:24 -0600
-
-r-base (2.6.2-1) unstable; urgency=low
-
- * New upstream version released this morning
-
- * debian/control: Added 'liblapack-dev' to Build-Depends: to switch back
- to using Debian's Lapack rather than the version supplied by R.
- * debian/rules: Dito, call configure with '--with-lapack'
-
- -- Dirk Eddelbuettel <edd at debian.org> Fri, 08 Feb 2008 09:40:02 -0600
-
-r-base (2.6.1-2) unstable; urgency=low
-
- * debian/control: Replace Build-Depends: on 'refblas3-dev | atlas3-base-dev'
- with 'libblas-dev' to use the new gfortran-built BLAS libraries. Thanks
- to Riku Voipio for the heads-up and patch. (Closes: #461767)
-
- * debian/control: Likewise set the Depends: for the quasi-virtual
- r-base-dev on 'libblas-dev' to enfore use of the new BLAS.
-
- * debian/control: Update Standards-Version: to current value.
-
- * debian/{r-base-core,r-recommended}.lintian: Add a few silencers for
- the 'package-contains-empty-directory' warnings.
-
- -- Dirk Eddelbuettel <edd at debian.org> Sun, 20 Jan 2008 20:24:52 -0600
-
-r-base (2.6.1-1) unstable; urgency=low
-
- * New upstream version released this morning
-
- * debian/rules: As gcc-4.2 is now, unset suffix '-4.2' on gcc et al
- * debian/control: Likewise, removed '-4.2' from gcc et al in Build-Depends
- and Depends for r-base-dev and used versioned Depends (>= 4:4.1.0)
- which are also suitable for backports and Ubuntu port -- and Debian
- will get 4.2 anyway as it is the default in testing and unstable
-
- * debian/rules: Define FC=gfortran as the Fortran95 compiler for packages
-
- * debian/r-base-core.shlibs: Point libR.so and libRlapack.so to r-base-core
-
- -- Dirk Eddelbuettel <edd at debian.org> Mon, 26 Nov 2007 11:20:57 -0600
-
-r-base (2.6.0-4) unstable; urgency=medium
-
- * Urgency medium as a "Depends: tk8.4 (>= 8.4.16-2)" is needed to undo
- the breakage introduced by the version in testing (tk8.4_8.4.16-1).
- This build does not introduce any new code or configuration settings
- and should migrate to testing as soon as possible.
-
- * Rebuild R to obtain Depends on newer Tk (Closes: #451152)
-
- * debian/shlibs.local: New file, added for Depends on newer tk8.4 which
- is not (yet) provided via the package's shlibs file, also filed a
- bugreport against tk8.4
-
- -- Dirk Eddelbuettel <edd at debian.org> Tue, 13 Nov 2007 19:45:59 -0600
-
-r-base (2.6.0-3) unstable; urgency=low
-
- * debian/r-cran.mk: Retiring the experimental javareconf support for now.
-
- -- Dirk Eddelbuettel <edd at debian.org> Wed, 10 Oct 2007 08:46:43 -0500
-
-r-base (2.6.0-2) unstable; urgency=low
-
- * debian/r-cran.mk: Set Java (re-)conf. call to "R CMD javareconf -e ''"
- to not require write to Makeconf file (Closes: #445722)
-
- -- Dirk Eddelbuettel <edd at debian.org> Tue, 09 Oct 2007 14:20:12 -0500
-
-r-base (2.6.0-1) unstable; urgency=low
-
- * New upstream version released this morning
-
- -- Dirk Eddelbuettel <edd at debian.org> Wed, 03 Oct 2007 10:25:43 -0500
-
-r-base (2.6.0~20070930-1) unstable; urgency=low
-
- * Second 'rc' release of R 2.6.0 expected to be released on October 3
-
- * debian/r-cran.mk:
- - Apply patch by David Vernazobres to permit additional argument
- - Add test for Java compiler and run R CMD javareconf if found
-
- -- Dirk Eddelbuettel <edd at debian.org> Mon, 01 Oct 2007 16:38:49 -0500
-
-r-base (2.6.0~20070925-1) unstable; urgency=low
-
- * Initial 'rc' release of R 2.6.0 expected to be released on October 3
-
- -- Dirk Eddelbuettel <edd at debian.org> Wed, 26 Sep 2007 10:08:33 -0500
-
-r-base (2.6.0~20070918-1) unstable; urgency=low
-
- * Initial 'beta' release of R 2.6.0 expected to be released on October 3
-
- -- Dirk Eddelbuettel <edd at debian.org> Wed, 19 Sep 2007 09:50:17 -0500
-
-r-base (2.6.0~20070910-3) unstable; urgency=low
-
- * debian/r-cran.mk: Fix another syntax error
-
- -- Dirk Eddelbuettel <edd at debian.org> Wed, 12 Sep 2007 21:54:10 -0500
-
-r-base (2.6.0~20070910-2) unstable; urgency=low
-
- * debian/r-cran.mk: Add missing escape to if/else/fi statement for xvfb-run
-
- -- Dirk Eddelbuettel <edd at debian.org> Wed, 12 Sep 2007 21:01:19 -0500
-
-r-base (2.6.0~20070910-1) unstable; urgency=low
-
- * Initial 'alpha' release of R 2.6.0 expected to be released on October 3
-
- * Debian changes:
- - debian/control: Added 'cdbs, debhelper' as Suggests: for r-base-dev
-
- - r-cran.mk: If the xvfb-run script is found, use it to wrap the call
- to 'R CMD INSTALL ...' to provide (virtual) X11 for packages that may
- need it, this even works in a pbuilder setting. If not found, just
- proceed as usual with a straight-up 'R CMD INSTALL ...'. Packages
- using this feature need Build-Depends on xvfb, xbase-clients (for
- xauth) and xfonts-base (for basic fonts).
-
- -- Dirk Eddelbuettel <edd at debian.org> Tue, 11 Sep 2007 16:24:33 -0500
-
-r-base (2.5.1-2) unstable; urgency=low
-
- * debian/control: Add r-cran-codetools to Depends: for r-recommends
-
- * debian/r-base-core.menu: Section now "Applications/Science/Data Analysis"
-
- * debian/Renviron-R_LIBS.patch: With R 2.5.*, modify R_LIBS_SITE not R_LIBS
-
- -- Dirk Eddelbuettel <edd at debian.org> Wed, 18 Jul 2007 14:26:06 -0500
-
-r-base (2.5.1-1) unstable; urgency=low
-
- * New upstream release
-
- -- Dirk Eddelbuettel <edd at debian.org> Thu, 28 Jun 2007 09:45:43 -0500
-
-r-base (2.5.1~20070625-1) unstable; urgency=low
-
- * Second release candidate for R 2.5.1 expected for June 28
-
- * To ensure successful builds involving Fortran, we need to explicitly
- select the gcc-4.2 versions of the the compiler suite in debian/rules,
- and per Build-Depends in debian/control as well as the Depends for
- r-base-dev. Backporters will probably need to revert this to 4.1.
- Thanks to Michael Ablassmeier and Lucas Nussbaum for the heads-up.
-
- * debian/control: Changed Build-Depends from 'gcc (>= 4:4.0),
- gfortran (>= 4.0.2)' to 'gcc-4.2, g++-4.2, gfortran-4.2'
- * debian/control: Changed Depends for r-base-dev from 'gfortran (>= 4.0.2),
- gcc (>= 4:4.0), g++ (>= 4:4.0)' to 'gcc-4.2, g++-4.2, gfortran-4.2'
-
- -- Dirk Eddelbuettel <edd at debian.org> Tue, 26 Jun 2007 09:36:23 -0500
-
-r-base (2.5.1~20070622-1) unstable; urgency=low
-
- * First release candidate for R 2.5.1 expected for June 28
-
- -- Dirk Eddelbuettel <edd at debian.org> Sat, 23 Jun 2007 20:13:22 -0500
-
-r-base (2.5.1~20070618-1) unstable; urgency=low
-
- * New beta release candidate for R 2.5.1 expected for June 28
-
- * debian/control: Add 'dpatch' to Depends: for r-base-dev to ensure
- that the r-cran.mk stanza can use dpatch (Closes: #429464)
-
- * debian/control: Switch from $Source-Version to $source:Version and
- $binary:Version (lintian)
-
- -- Dirk Eddelbuettel <edd at debian.org> Mon, 18 Jun 2007 08:09:11 -0500
-
-r-base (2.5.1~20070614-1) unstable; urgency=low
-
- * First 'beta' of R 2.5.1 expected to be released on June 28
-
- * debian/r-cran.mk: Add dpatch.mk to debian/rules stanza
-
- -- Dirk Eddelbuettel <edd at debian.org> Thu, 14 Jun 2007 21:36:05 -0500
-
-r-base (2.5.1~20070530-1) unstable; urgency=low
-
- * R-patched as of 2007-05-30
-
- -- Dirk Eddelbuettel <edd at debian.org> Thu, 31 May 2007 16:05:30 -0500
-
-r-base (2.5.1~20070513-1) unstable; urgency=low
-
- * R-patched as of 2007-05-13
-
- * First release with new upstream support for DESTDIR
-
- -- Dirk Eddelbuettel <edd at debian.org> Mon, 14 May 2007 08:57:08 -0500
-
-r-base (2.5.0-2) unstable; urgency=low
-
- * src/nmath/standalone/Makefile.in,src/scripts/Makefile.in,
- src/unix/Makefile.in: Applied patch by Martyn Plummer which
- brings R closer to standard GNU behaviour with respect to
- 'make install' redirection. In particular, this fixes the
- new binary /usr/bin/Rscript which was broken in 2.5.0-1, also
- corrects /usr/pkgconfig/libR.pc, adds the a new file
- /usr/pkgconfig/libRmath.pc (for r-mathlib) and also corrects
- /usr/bin/R which we used to patch post-'make install'.
-
- * debian/control: Added Depends: for r-recommended on r-cran-rcompgen
- as this package is now in Debian unstable.
-
- * /etc/ld.so.conf.d/R.conf: Added new file so that libR.so and
- libRlapack.so will be known to ld.so
-
- * debian/rules: Call configure with --enable-memory-profiling
-
- -- Dirk Eddelbuettel <edd at debian.org> Wed, 2 May 2007 21:17:47 -0500
-
-r-base (2.5.0-1) unstable; urgency=low
-
- * New upstream release
-
- -- Dirk Eddelbuettel <edd at debian.org> Tue, 24 Apr 2007 06:09:00 -0500
-
-r-base (2.5.0~20070422-1) unstable; urgency=low
-
- * First 'rc' package of R 2.5.0 expected to be released next week
-
- -- Dirk Eddelbuettel <edd at debian.org> Mon, 23 Apr 2007 08:12:25 -0500
-
-r-base (2.5.0~20070412-1) unstable; urgency=low
-
- * First 'beta release of R 2.5.0 expected to be released later this month
-
- * debian/r-cran.mk: Added test for value of 'Priority: in DESCRIPTION which
- is used for the choice of the install directory below $R_HOME
-
- -- Dirk Eddelbuettel <edd at debian.org> Fri, 13 Apr 2007 14:14:41 -0500
-
-r-base (2.5.0~20070407-1) unstable; urgency=low
-
- * First 'alpha' release of R 2.5.0 expected to be released later this month
-
- * debian/rules: Configure R to use original zip and unzip instead
- of the 'mini' variant as some packages want a -q option for unzip.
- * debian/control: Switch Depends: from zlib-bin to 'zip, unzip'
-
- * debian/r-cran.mk: Allow for optional $(debRreposname) to allow
- automated switching from CRAN builds to BioC builds.
- Thanks to Steffen Moeller for the patch.
-
- * debian/r-cran.mk: Allow for options $(makeFlags) to be passed to
- R CMD INSTALL -- for example the RQuantLib package makes use of this
-
- -- Dirk Eddelbuettel <edd at debian.org> Sun, 8 Apr 2007 06:56:08 -0500
-
-r-base (2.4.1-2) unstable; urgency=low
-
- * src/main.c: Applied patch provided by Samuel Thibault to allow builds
- on hurd-i386 which (still) lacks SA_SIGINFO. Bug report also forwarded
- upstream, and R 2.5.0 should have a fix too. (Closes: #407358)
-
- -- Dirk Eddelbuettel <edd at debian.org> Sat, 27 Jan 2007 13:12:13 -0600
-
-r-base (2.4.1-1) unstable; urgency=low
-
- * New upstream version released this morning
-
- * Debian package for 'unstable' as Debian 4.0 ('etch') is frozen
-
- -- Dirk Eddelbuettel <edd at debian.org> Mon, 18 Dec 2006 08:53:09 -0600
-
-r-base (2.4.1~20061205-1) unstable; urgency=low
-
- * First beta package of the upcoming R 2.4.1 scheduled for December 18
-
- -- Dirk Eddelbuettel <edd at debian.org> Wed, 6 Dec 2006 22:51:18 -0600
-
-r-base (2.4.0.20061125-1) unstable; urgency=low
-
- * New upstream version patch version dated 2006-11-03
- -- a new R 2.4.1 release should arrive in just a few weeks
- * debian/r-base-core.postinst: Rewrote paperconf handling one
- more, with thanks to Marc Glisse for another good suggestion
-
- -- Dirk Eddelbuettel <edd at debian.org> Sun, 26 Nov 2006 18:21:16 -0600
-
-r-base (2.4.0.20061103-1) unstable; urgency=low
-
- * New upstream version patch version dated 2006-11-03
- -- a new R 2.4.1 release may arrive in a few weeks
-
- -- Dirk Eddelbuettel <edd at debian.org> Thu, 2 Nov 2006 21:50:13 -0600
-
-r-base (2.4.0.20061029-2) unstable; urgency=low
-
- * debian/r-cran.mk: Another brown paperbag fix, this time for the logic
-
- -- Dirk Eddelbuettel <edd at debian.org> Sun, 29 Oct 2006 17:36:36 -0600
-
-r-base (2.4.0.20061029-1) unstable; urgency=low
-
- * New upstream version patch version taken from svn as of 2006-10-29
- -- a new R 2.4.1 release may arrive in a few weeks
-
- * debian/r-cran.mk: Brown paperbag fix replacing space with tabs
-
- -- Dirk Eddelbuettel <edd at debian.org> Sun, 29 Oct 2006 11:35:16 -0600
-
-r-base (2.4.0.20061027-1) unstable; urgency=low
-
- * New upstream version patch version dated 2006-10-27
- -- a proper R 2.4.1 is not expected until December 2006
-
- * debian/r-base-core.postinst: Rewrote paperconf handling (Closes: #394114)
- * debian/R.bash_completion: use updated version from Deepayan Sarkar
- * debian/r-cran.mk: If present, also install lintian overrides file
-
- -- Dirk Eddelbuettel <edd at debian.org> Sat, 28 Oct 2006 20:11:10 -0500
-
-r-base (2.4.0-1) unstable; urgency=low
-
- * New upstream version released this morning
-
- * debian/rules: Link /usr/share/texmf/tex/latex/R to ../../../R/share/texmf,
- instead of the older link into /usr/lib (Closes: #390751)
-
- -- Dirk Eddelbuettel <edd at debian.org> Tue, 3 Oct 2006 07:07:02 -0500
-
-r-base (2.4.0~rc20060926-1) unstable; urgency=low
-
- * First release candidate of the upcoming R 2.4.0 planned for October 3
-
- * debian/rules: Install ldpaths in /etc/R and link back to $R_HOME/etc
- * debian/rules: Patch javareconf to use /etc/R instead of $R_HOME/etc
-
- -- Dirk Eddelbuettel <edd at debian.org> Thu, 28 Sep 2006 20:15:03 -0500
-
-r-base (2.4.0~rc20060922-1) unstable; urgency=low
-
- * First beta release of the upcoming R 2.4.0 planned for October 3
-
- -- Dirk Eddelbuettel <edd at debian.org> Sat, 23 Sep 2006 10:59:39 -0500
-
-r-base (2.4.0~rc20060919-1) unstable; urgency=low
-
- * First alpha release of the upcoming R 2.4.0 planned for October 3
-
- * debian/rules: Updated CFLAGS and FFLAGS to -O3, and set LDFLAGS
- to -Wl,-O1 as suggested by upstream.
- * debian/rules: Additional LDFLAGS options '-Bdirect,--hash-style=both'
- will be added once binutils support them.
-
- * debian/control: Use a '>=' instead of '=' in Depends: on r-base-core
- for arch-independent package r-base, r-base-dev, r-recommend [lintian]
-
- -- Dirk Eddelbuettel <edd at debian.org> Tue, 19 Sep 2006 14:51:47 -0500
-
-r-base (2.3.1-3) unstable; urgency=low
-
- * debian/r-doc-html.preinst: Apply one-char fix suggested by
- Don Armstrong (Closes: #382696)
- * debian/control: Added forgotten Conflicts: r-gnome
-
- -- Dirk Eddelbuettel <edd at debian.org> Tue, 29 Aug 2006 19:35:07 -0500
-
-r-base (2.3.1-2) unstable; urgency=low
-
- * debian/control: Removed obsolete and deprecated r-gnome entry
- * debian/control: Added Conflicts:, Replaces: and Provides: for
- 'r-gnome (<= 2.3.1)' to r-base-core to finally replace r-gnome
-
- * debian/r-doc-html.preinst: Added file with test for symlink
- /usr/share/doc/r-doc-html/manual/ which may be left over from
- a previous installation and needs to be removed for a clean
- current installation (Closes: #376940)
-
- * debian/rules: Correct softlink for /usr/share/doc/r-base-core/doc
- into /usr/share/R/doc (Closes: #380126)
-
- -- Dirk Eddelbuettel <edd at debian.org> Fri, 28 Jul 2006 19:52:13 -0500
-
-r-base (2.3.1-1) unstable; urgency=low
-
- * New upstream release released this morning
-
- -- Dirk Eddelbuettel <edd at debian.org> Thu, 1 Jun 2006 06:14:26 -0500
-
-r-base (2.3.0.svn38197-1) unstable; urgency=low
-
- * Second beta release of the upcoming R 2.3.1 scheduled for June 1
-
- -- Dirk Eddelbuettel <edd at debian.org> Fri, 26 May 2006 06:09:03 -0500
-
-r-base (2.3.0.svn38119-1) unstable; urgency=low
-
- * First beta release of the upcoming R 2.3.1 scheduled for June 1
-
- * debian/control: Standards-Version: increased to 3.7.2
-
- * debian/r-cran.mk: Small improvements
-
- -- Dirk Eddelbuettel <edd at debian.org> Fri, 19 May 2006 20:15:30 -0500
-
-r-base (2.3.0-1) unstable; urgency=low
-
- * New upstream version 2.3.0 released this morning
-
- -- Dirk Eddelbuettel <edd at debian.org> Mon, 24 Apr 2006 09:30:57 -0500
-
-r-base (2.2.1.svn37779-1) unstable; urgency=low
-
- * Second beta release of the upcoming R 2.3.0 scheduled for April 24
-
- * src/main/version.c: Upstream fix for 'R --version' (Closes: #361968)
-
- -- Dirk Eddelbuettel <edd at debian.org> Sat, 15 Apr 2006 16:30:20 -0500
-
-r-base (2.2.1.svn37715-1) unstable; urgency=low
-
- * First beta release of the upcoming R 2.3.0 scheduled for April 24
-
- * debian/rules: On ppc64, add -mminimal-toc to compiler flags
- Thanks to Andreas Jochens for the patch. (Closes: #361604)
-
- -- Dirk Eddelbuettel <edd at debian.org> Sun, 9 Apr 2006 07:40:48 -0500
-
-r-base (2.2.1.svn37668-1) unstable; urgency=low
-
- * Second alpha release of the upcoming R 2.3.0 planned for April 24
-
- * configure{,.ac}: Upstream fix also selecting -fPIC on s390* which is
- less invasive than the rushed and uncoordinated binary NMU below. Please
- consider talking to the Debian maintainer, or R Core, before making
- undifferentiated wholesale changes to the build process. (Closes: #361219)
-
- -- Dirk Eddelbuettel <edd at debian.org> Sat, 8 Apr 2006 09:18:09 -0500
-
-r-base (2.2.1.svn37642-1.1) unstable; urgency=low
-
- * Non-maintainer upload.
- * Always build with -fPIC. (closes: #361219)
-
- -- Bastian Blank <waldi at debian.org> Fri, 7 Apr 2006 08:59:15 +0000
-
-r-base (2.2.1.svn37642-1) unstable; urgency=low
-
- * First alpha release of the upcoming R 2.3.0 planned for April 24
-
- * debian/r-cran.mk: New file to be used as debian/rules for r-cran-*
- * debian/rules: Accomodate installation of cran.mk into r-base-dev
-
- * debian/control: Set gcc and gfortran Build-Depends: to version 4
- * debian/control: Likewise for Depends: of r-base-dev
-
- * debian/rules: Add -std=gnu99 to C compiler flags, and split and
- slightly reorganize compiler flags and optimization options
-
- * debian/{r-base-core,r-mathlib}.lintian: Added a few entries
-
- -- Dirk Eddelbuettel <edd at debian.org> Tue, 4 Apr 2006 17:55:51 -0500
-
-r-base (2.2.1-6) unstable; urgency=medium
-
- * debian/r-base-core.preinst: The symbolic link /usr/lib/R/share
- introduced in -4 prevents the directory added in -5 to be created
- so remove if found in the preinst.
-
- * Urgency still set up to medium so that testing and unstable users get
- the fix quickly.
-
- -- Dirk Eddelbuettel <edd at debian.org> Mon, 6 Feb 2006 12:00:21 -0600
-
-r-base (2.2.1-5) unstable; urgency=medium
-
- * debian/build-help.pl: Empty stanza to just print warning when called.
- * debian/rules: Install that quasi-empty file debian/build-help.pl as
- /usr/lib/R/share/perl/build-help.pl so that the not-yet-updated
- r-cran-* et al add-on packages for R do not fail now that the upstream
- build-help.pl is install in /usr/share/R/share/perl/. The softlink
- solution introduced in 2.2.1-4 fails for upgrades on testing where
- /usr/lib/R/share/ already exists as a directory.
-
- * Urgency set up to medium so that testing users get the fix quickly.
- No other changes than creation of the two-liner build-help.pl
-
- -- Dirk Eddelbuettel <edd at debian.org> Mon, 6 Feb 2006 09:23:14 -0600
-
-r-base (2.2.1-4) unstable; urgency=low
-
- * debian/rules: Until the postinst and postrm calls in all r-cran-*
- packages have been updated, add a transitional link so we can call
- /usr/lib/R/share/perl/build-help.pl (Closes: #349637)
-
- -- Dirk Eddelbuettel <edd at debian.org> Tue, 24 Jan 2006 07:13:34 -0600
-
-r-base (2.2.1-3) unstable; urgency=low
-
- * Re-wrote parts of debian/* to take advantage of recent upstream changes
- permitting installation of (most) files outside of /usr/lib/R;
- * debian/rules: Use configure options
- --datadir=/usr/share/R/share and
- --includedir=/usr/share/R/include
- as well as 'make install' targets
- rsharedir, rincludedir, and rdocdir
- * debian/r-{base-html.{files,dirs}, doc-pdf.{files,links},
- doc-html.{file,links}}:
- updated accordingly to refer to /usr/share/R/* instead of /usr/lib/R
- * For R itself (but not for packages), architecture-independent files
- of r-base-core now install below /usr/share/R (Closes: #300765)
-
- * debian/control: Added Build-Depends: for libx11-dev, libxt-dev, x-dev
- (though the existing Build-Depends on tcl/tk effectively cover this).
- Credits for the suggestion go to the xlibs-split-check script .
-
- -- Dirk Eddelbuettel <edd at debian.org> Sat, 21 Jan 2006 18:14:37 -0600
-
-r-base (2.2.1-2) unstable; urgency=low
-
- * debian/control: Remove Build-Depends: on libpaperg-dev as we do not
- actually build against libpaper anyway (Closes: #346403)
- * debian/control: Add Depends: on libpaper-utils to r-base-core,
- and remove different Suggests: of libpaperg
-
- * debian/control: Update Standards-Version: to 3.6.2
- * debian/control: Change Architecture: any for empty r-recommended
-
- -- Dirk Eddelbuettel <edd at debian.org> Sat, 7 Jan 2006 20:18:06 -0600
-
-r-base (2.2.1-1) unstable; urgency=low
-
- * New upstream version 2.2.1 released this morning
-
- * debian/control: Remove unnecessary f2c from Depends: in r-base-dev
- * debian/rules: Set DH_COMPAT=4
-
- -- Dirk Eddelbuettel <edd at debian.org> Tue, 20 Dec 2005 06:18:38 -0600
-
-r-base (2.2.0.rc.20051214-1) unstable; urgency=low
-
- * Second beta release of the upcoming R 2.2.1 planned for December 20
-
- -- Dirk Eddelbuettel <edd at debian.org> Thu, 15 Dec 2005 16:25:43 -0600
-
-r-base (2.2.0.rc.20051206-1) unstable; urgency=low
-
- * First beta release of the upcoming R 2.2.1 planned for December 20
-
- * debian/rules: Install bash completion file debian/R.bash_completion
- by Deepayan Sarkar and announced to r-devel on 2005-11-30
-
- -- Dirk Eddelbuettel <edd at debian.org> Wed, 7 Dec 2005 19:34:47 -0600
-
-r-base (2.2.0.final-4) unstable; urgency=low
-
- * debian/rules: Really skip 'make check' on hppa (Closes: #333462)
-
- -- Dirk Eddelbuettel <edd at debian.org> Mon, 24 Oct 2005 18:59:16 -0500
-
-r-base (2.2.0.final-3) unstable; urgency=low
-
- * debian/rules: Skip 'make check' on hppa (Closes: #333462)
-
- -- Dirk Eddelbuettel <edd at debian.org> Mon, 24 Oct 2005 08:53:22 -0500
-
-r-base (2.2.0.final-2) unstable; urgency=low
-
- * Rebuilt with properly renamed .orig.tar.gz (Closes: #332586)
-
- -- Dirk Eddelbuettel <edd at debian.org> Fri, 7 Oct 2005 21:20:16 -0500
-
-r-base (2.2.0.final-1) unstable; urgency=low
-
- * New upstream version 2.2.0 released today, following six
- Debian pre-releases (and a repeat of a version number snafu made
- years ago, hence the need for the '.final')
-
- -- Dirk Eddelbuettel <edd at debian.org> Thu, 6 Oct 2005 21:18:53 -0500
-
-r-base (2.2.0.beta.20050929-1) unstable; urgency=low
-
- * Second weekly beta release (using 2005-09-22 candidate) of R 2.2.0
-
- * debian/rules: Call configure with LIBnn=lib to enforce use of
- /usr/lib everywhere, including amd64 (Closes: #329952)
-
- * share/perl/build-help.pl: Wrote patch to re-enable deprecated --htmllists
- argument as a no-op so that our r-cran-* postinst files can call it.
-
- -- Dirk Eddelbuettel <edd at debian.org> Thu, 29 Sep 2005 21:45:12 -0500
-
-r-base (2.2.0.beta.20050922-2) unstable; urgency=low
-
- * debian/rules: Create softlink from R's TeX files (used for doc.
- and Sweave) into the texmf hierarchy. (Thanks, Gregor Gorjanc)
- * debian/r-base-core.dirs: Add 'usr/share/texmf/tex/latex'
- * debian/r-base-core.postinst: Call texhash if it exists
-
- * Really re-apply the Perl fix (share/perl/{build-help.pl,R/Rdlists.pm)
- to maintain compatibility with all the r-cran-* packages postinst
- (Closes: #330085)
-
- -- Dirk Eddelbuettel <edd at debian.org> Sun, 25 Sep 2005 16:07:07 -0500
-
-r-base (2.2.0.beta.20050922-1) unstable; urgency=low
-
- * First beta release candidate (dated 2005-09-22) of R 2.2.0
-
- * Following prior practice, this release is designated for unstable
- after the two first alpha releases in experiment.
-
- * share/perl/build-help.pl, share/perl/R/Rdlists.pm: As in the previous
- snapshot, fall back to R 2.1.1 code to support other r-cran-* packages
-
- -- Dirk Eddelbuettel <edd at debian.org> Thu, 22 Sep 2005 21:10:12 -0500
-
-r-base (2.2.0.alpha.20050915-1) experimental; urgency=low
-
- * Second alpha release of the upcoming R 2.2.0 planned for October 6
-
- * share/perl/build-help.pl, share/perl/R/Rdlists.pm: As in the previous
- snapshot, fall back to R 2.1.1 code to support other r-cran-* packages
-
- -- Dirk Eddelbuettel <edd at debian.org> Thu, 15 Sep 2005 19:37:11 -0500
-
-r-base (2.2.0.alpha.20050908-2) experimental; urgency=low
-
- * debian/rules: Also re-set the newly added variables R_SHARE_DIR,
- R_INCLUDE_DIR and R_DOC_DIR in /usr/bin/R (Closes: #327446)
-
- * share/perl/build-help.pl: Revert to the version from R 2.1.1 as
- we need the now deprecated --htmllists argument in the postinst
- and postrm scripts of several dozen r-cran-* packages.
- * share/perl/R/Rdlists.pm: Carry build_htmlpkglists() and read_titles()
- over from 2.1.1 to support the --htmllists code
-
- -- Dirk Eddelbuettel <edd at debian.org> Sat, 10 Sep 2005 13:12:08 -0500
-
-r-base (2.2.0.alpha.20050908-1) experimental; urgency=low
-
- * First alpha release of the upcoming R 2.2.0 planned for October 6
-
- * debian/{control,rules}: Build-Depends switched to gcc-4.0
- by removing "gcc-3.4, g++-3.4, g77-3.4"
-
- -- Dirk Eddelbuettel <edd at debian.org> Thu, 8 Sep 2005 22:35:50 -0500
-
-r-base (2.1.1-1) unstable; urgency=low
-
- * New upstream version 2.1.1 released today
-
- * debian/control: Remove redundant Build-Depends on 'mawk | gawk | awk'
-
- -- Dirk Eddelbuettel <edd at debian.org> Mon, 20 Jun 2005 18:50:41 -0500
-
-r-base (2.1.0.beta.20050613-1) unstable; urgency=low
-
- * Upgraded to the R 2.1.1 beta release candidate dated 2005-06-13
-
- * debian/rules: configure call with AWK="/usr/bin/awk" (Closes: #307683)
- * debian/control: New Build-Depends on 'mawk | gawk | awk'
-
- -- Dirk Eddelbuettel <edd at debian.org> Mon, 13 Jun 2005 21:04:50 -0500
-
-r-base (2.1.0-1) unstable; urgency=low
-
- * New upstream version 2.1.0 released today
-
- -- Dirk Eddelbuettel <edd at debian.org> Mon, 18 Apr 2005 20:24:26 -0500
-
-r-base (2.0.1.beta.20050410-1) unstable; urgency=low
-
- * Upgraded to the R 2.1.0 beta release candidate dated 2005-04-10
-
- * With R 2.1.0 scheduled to be released on April 18, this release
- candidate will be uploaded to unstable to allow for wider testing
-
- * debian/rules: Also copy new file 'repositories' to /etc/R and link back
-
- -- Dirk Eddelbuettel <edd at debian.org> Sun, 10 Apr 2005 21:12:25 -0500
-
-r-base (2.0.1.alpha.20050403-1) experimental; urgency=low
-
- * Upgraded to the R 2.1.0 alpha release candidate dated 2005-04-03
-
- * This upload is still slated for experimental; beta release
- candidates of 2.1.0 will go into unstable
-
- -- Dirk Eddelbuettel <edd at debian.org> Sun, 3 Apr 2005 16:04:29 -0500
-
-r-base (2.0.1.alpha.20050322-1) experimental; urgency=low
-
- * Initial attempt at packaging the upcoming R 2.1.0
-
- * debian/rules: No longer install $RHOME/bin/Rdindex
-
- * debian/rules: No longer build the Gnome GUI which has been
- unbundled upstream as it was never fully completed
- * debian/control: Update r-gnome Description
- * debian/control: r-gnome is now Binary: all, removed ${shlibs:Depends}
- and versioned (= ${Source-Version}) part of Depends on r-base-core
- * debian/control: Reduce Build-Depends by libgnome-dev, libzvt-dev,
- libgtkxmhtml-dev, libglade-gnome0-dev
- * debian/r-gnome.NEWS: New file with message about removeal of UI
-
- * debian/control: For r-base-dev, switched from the black magic
- "g77 | m68k, f2c | not+m68k, type-handling" to "g77, f2c" as
- type-handling no longer allows this (Closes: #296287)
-
- * debian/r-mathlib.shlibs: Correct to 'libRmath 1 r-mathlib (>= 2.0)'
- with thanks to Chris Lawrence
-
- -- Dirk Eddelbuettel <edd at debian.org> Mon, 21 Mar 2005 21:20:09 -0600
-
-r-base (2.0.1-4) unstable; urgency=low
-
- * Removed erroneously left-over doc-base file (Closes: #296194)
- * debian/r-doc-{html,pdf}.links: Link individual files, not the
- entire manual directory, in order to circumvent a dhelp bug
-
- -- Dirk Eddelbuettel <edd at debian.org> Sun, 20 Feb 2005 17:24:07 -0600
-
-r-base (2.0.1-3) unstable; urgency=low
-
- * debian/r-doc-html.doc-base.*: Added five doc-base control files
- to register the html documentation with doc-base (Closes: #296089)
-
- -- Dirk Eddelbuettel <edd at debian.org> Sun, 20 Feb 2005 07:59:53 -0600
-
-r-base (2.0.1-2) unstable; urgency=low
-
- * debian/control: Switch the Depends: on the helper package r-base-dev
- to libreadline5-dev to help readline5 migration (Closes: #291655)
- * debian/control: Also switch Build-Depends: to libreadline5-dev
-
- -- Dirk Eddelbuettel <edd at debian.org> Sun, 23 Jan 2005 13:39:50 -0600
-
-r-base (2.0.1-1) unstable; urgency=medium
-
- * New upstream release
- * Urgency medium as this version contains numerous upstream fixes,
- as well as Debian fixes from 2.0.0-4 that have are not yet in testing
-
- * debian/control: Add r-recommended to Depends: for r-base
-
- -- Dirk Eddelbuettel <edd at debian.org> Mon, 15 Nov 2004 09:39:01 -0600
-
-r-base (2.0.0-4) unstable; urgency=medium
-
- * Urgency medium to get the fix into the testing distribution in which
- r-recommended currently has insufficiently detailed Depends:
- * debian/control: Change Depends: for r-recommended to be versioned, and
- impose a minimum standard of package versions rebuilt under R 2.0.0
- as required by the underlying lazyloading changes (Closes: #278528)
-
- -- Dirk Eddelbuettel <edd at debian.org> Wed, 27 Oct 2004 20:26:31 -0500
-
-r-base (2.0.0-3) unstable; urgency=low
-
- * Two improvements suggested by Kurt Hornik:
- - debian/control: r-base now Depends: on r-base-core (= ${Source-Version})
- - debian/control: Fix MASS book title in Description: of r-recommends
-
- * Reorganisation of r-mathlib suggested and tested by Faheem Mitha:
- - debian/control: r-mathlib now only Recommends: insteads of Depends:
- on r-base-core and r-base-dev (Closes: #276038)
- - debian/rules: Small changes to give r-mathlib its own doc directory
- - debian/r-mathlib.links: Renamed to r-mathlib.links.unused disable
-
- * Update to use of Lapack code as suggested by Doug Bates:
- - debian/rules: Set Lapack back to --with-lapack=no
- - debian/control: Remove "lapack3-dev | atlas3-base-dev" from Build-Depends
- - debian/control: Remove "lapack3-dev | atlas3-base-dev | liblapack-3.so"
- from Depends for r-base-dev as well
- - debian/rules: Turn 'make check' back on (outside of arm)
-
- -- Dirk Eddelbuettel <edd at debian.org> Wed, 13 Oct 2004 20:12:30 -0500
-
-r-base (2.0.0-2) unstable; urgency=low
-
- * src/main/startup.c: Removed 'static' on RestoreAction declaration
- as recommend by Brian Ripley in bug report follow-up (Closes: #275791)
-
- -- Dirk Eddelbuettel <edd at debian.org> Mon, 11 Oct 2004 09:55:11 -0500
-
-r-base (2.0.0-1) unstable; urgency=low
-
- * New upstream release
-
- * src/library/tools/R/admin.R, src/scripts/INSTALL.in: Applied
- small patch by Brian Ripley to address package build issues
-
- -- Dirk Eddelbuettel <edd at debian.org> Tue, 5 Oct 2004 17:53:51 -0500
-
-r-base (1.9.1.beta.20040929-1) experimental; urgency=low
-
- * Upgraded to the R 2.0.0 beta release candidate dated 2004-09-29
- * Still uploading to 'experimental' to keep 1.9.1-3 in testing
-
- -- Dirk Eddelbuettel <edd at debian.org> Wed, 29 Sep 2004 15:40:10 -0500
-
-r-base (1.9.1.beta.20040928-1) experimental; urgency=low
-
- * Upgraded to the R 2.0.0 beta release candidate dated 2004-09-28
- * Still uploading to 'experimental' to keep 1.9.1-3 in testing
- * debian/rules: No longer install BUGS which is no longer in upstream sources
-
- -- Dirk Eddelbuettel <edd at debian.org> Tue, 28 Sep 2004 22:22:52 -0500
-
-r-base (1.9.1.beta.20040925-1) experimental; urgency=low
-
- * Upgraded to the R 2.0.0 beta release candidate dated 2004-09-25
- * Still uploading to 'experimental' to keep 1.9.1-3 in testing
-
- -- Dirk Eddelbuettel <edd at debian.org> Sat, 25 Sep 2004 08:43:01 -0500
-
-r-base (1.9.1.beta.20040921-1) experimental; urgency=low
-
- * Upgraded to the R 2.0.0 beta release candidate dated 2004-09-21
- * Still uploading to 'experimental' to keep 1.9.1-3 in testing
-
- -- Dirk Eddelbuettel <edd at debian.org> Tue, 21 Sep 2004 21:00:41 -0500
-
-r-base (1.9.1.alpha.20040912-1) experimental; urgency=low
-
- * Upgraded to the R 2.0.0 alpha release candidate dated 2004-09-12
- * Still uploading to 'experimental' as 1.9.1-3 is not yet in testing
-
- -- Dirk Eddelbuettel <edd at debian.org> Sun, 12 Sep 2004 15:44:38 -0500
-
-r-base (1.9.1.alpha.20040906-1) experimental; urgency=low
-
- * Upgraded to the initial R 2.0.0 alpha release candidate dated 2004-09-06
-
- * Distribution set to 'experimental' as we would like the previous release
- 1.9.1-3 to migrate to 'testing' first; as that has happened we will make
- alpha and/or beta releases of 2.0.0 to 'unstable' prior to the formal
- release
-
- -- Dirk Eddelbuettel <edd at debian.org> Mon, 6 Sep 2004 22:00:56 -0500
-
-r-base (1.9.1-3) unstable; urgency=low
-
- * debian/control: Expanded Depends for r-base-dev to include virtual
- packages libblas-3.so and liblapack-3.so as final alternatives.
- * debian/copyright: Author list updated as suggested by Kurt Hornik
- * src/modules/gnome/system.c: Change 'R_Interactive = 1' instead of the
- isatty() call, as suggested by Brian D. Ripley (Closes: #269107)
-
- -- Dirk Eddelbuettel <edd at debian.org> Tue, 31 Aug 2004 21:49:39 -0500
-
-r-base (1.9.1-2) unstable; urgency=low
-
- * debian/r-base-core.postinst: Papersize code conditional on paperconf
- * debian/control: Added Suggests for libpaper-utils
-
- -- Dirk Eddelbuettel <edd at debian.org> Tue, 22 Jun 2004 06:33:26 -0500
-
-r-base (1.9.1-1) unstable; urgency=low
-
- * Upgraded to version 1.9.1 released today
-
- * debian/rules: Configure with R_PAPERSIZE='letter'
- * debian/r-base-core.postinst: Re-wrote papersize setting code
-
- -- Dirk Eddelbuettel <edd at debian.org> Mon, 21 Jun 2004 09:31:02 -0500
-
-r-base (1.9.0.beta.20040614-1) unstable; urgency=low
-
- * Upgraded to the initial 1.9.1 beta release candidate of 2004-06-14
-
- -- Dirk Eddelbuettel <edd at debian.org> Mon, 14 Jun 2004 15:02:14 -0500
-
-r-base (1.9.0.alpha.20040607-1) unstable; urgency=low
-
- * Upgraded to the initial 1.9.1 alpha release candidate of 2004-06-07
-
- * Contains upstream fix for version number in search entry of CRAN
- packages, with thanks to Kurt Hornik (Closes: #248430)
-
- * debian/Renviron-R_PAPERSIZE.patch: New patch to set R_PAPERSIZE in
- /etc/R/Renviron by respecting both a prior setting and the value
- in /etc/papersize, with thanks to Matej Cepl (Closes: #245525)
-
- * debian/control: Remove unversioned g++ from Build-Depends [ lintian ]
- * debian/control: r-mathlib, r-recommended get versioned Depends
- on r-base-core as doc directories are symlinked [ lintian ]
-
- -- Dirk Eddelbuettel <edd at debian.org> Tue, 8 Jun 2004 07:00:41 -0500
-
-r-base (1.9.0-1) unstable; urgency=low
-
- * Upgraded to version 1.9.0 released today
-
- -- Dirk Eddelbuettel <edd at debian.org> Mon, 12 Apr 2004 07:30:12 -0500
-
-r-base (1.8.1.cvs.20040410-1) unstable; urgency=low
-
- * Upgraded to beta release candidate 2004-04-10 of R 1.9.0
-
- -- Dirk Eddelbuettel <edd at debian.org> Sun, 11 Apr 2004 22:27:32 -0500
-
-r-base (1.8.1.cvs.20040331-1) unstable; urgency=low
-
- * Upgraded to beta release candidate 2004-03-31 of R 1.9.0
-
- -- Dirk Eddelbuettel <edd at debian.org> Thu, 1 Apr 2004 14:50:52 -0600
-
-r-base (1.8.1.cvs.20040321-1) unstable; urgency=low
-
- * Upgraded to beta release candidate 2004-03-21 of R 1.9.0
-
- -- Dirk Eddelbuettel <edd at debian.org> Sun, 21 Mar 2004 18:35:03 -0600
-
-r-base (1.8.1.cvs.20040314-1) unstable; urgency=low
-
- * Upgraded to release candidate 2004-03-14 of R 1.9.0
-
- -- Dirk Eddelbuettel <edd at debian.org> Sun, 14 Mar 2004 17:37:03 -0600
-
-r-base (1.8.1.cvs.20040307-1) unstable; urgency=low
-
- * Upgraded to release candidate 2004-03-07 of R 1.9.0
-
- -- Dirk Eddelbuettel <edd at debian.org> Sun, 7 Mar 2004 08:29:00 -0600
-
-r-base (1.8.1.cvs.20040229-2) unstable; urgency=low
-
- * debian/control: Declare Replaces: r-recommended as well for r-base-html
- and r-base-latex as they contain parts of 'grid' which used to be in
- r-recommended, but is now in r-base-core and these two (Closes: #235891)
-
- * debian/rules: Do not ship usr/share/info/dir(.old) (Closes: #235713)
-
- -- Dirk Eddelbuettel <edd at debian.org> Tue, 2 Mar 2004 20:33:18 -0600
-
-r-base (1.8.1.cvs.20040229-1) unstable; urgency=low
-
- * Upgraded to release candidate 2004-02-29 of R 1.9.0
-
- * debian/rules changes to configure call
- --without-r-recommended (as r-recommended is now a meta-package)
- --with-bzlib to override default of no
- --with-pcre to override default of no
- --with-zlib to override default of no
- R_BROWSER=sensible-browser to not depend on mozilla
-
- * debian/control: r-base-core Replace r-recommended (<= 1.8.1-1) as
- the grid package moved
-
- * debian/control: r-recommended is now a metapackage that depends on the
- individual packages which are now part of the Debian distribution;
- and added appropriate Depends for all of them
- * debian/rules: Hence 'configure [...] --without-recommended-packages [...]'
- * debian/control: Added Conflicts: r-recommended (<< 1.9.0) to r-base-core
-
- * debian/rules: In make-arch target, now call "make docs" with
- R_CMD_BUILD_HELP_OPTS="--txt --example" to build only the documentation
- needed for binary-arch targets (thanks to Kurt Hornik for enabling this)
-
- * debian/rules: configure with PAGER=/usr/bin/pager as all the good
- reasons pointed out in #230524 regarding octave2.1 apply to R too
-
- * debian/control: Depends for r-base-dev changed from the imperfect
- "g77 | f2c" to to "g77 | m68k, f2c | not+m68k, type-handling" with
- thanks to Wouter Verhelst
-
- * debian/control: Changed Build-Depends from 'blas-dev (>=1.0-9),lapack-dev'
- to 'refblas3-dev | atlas3-base-dev, lapack3-dev | atlas3-base-dev'
- * debian/control: Dito for Depends: for r-base-dev
- * debian/rules: Set configure arguments for refblas3/atlas3 and
- lapack3/atlas3, respectively, instead of blas/atlas v2.
-
- -- Dirk Eddelbuettel <edd at debian.org> Sun, 29 Feb 2004 16:55:55 -0600
-
-r-base (1.8.1-2) unstable; urgency=low
-
- * debian/control: Added to Build-Depends
- libpaper-utils for paperconf
- libjpeg62-dev for jpeg (thanks to Kurt Hornik for the suggestion)
- libprce3-dev for pcre
- linpng12-dev for png
- zlib1g-dev for zlib
-
- * debian/control: Added to Depends for r-base-dev
- libjpeg62-dev, libpcre3-dev (thanks to Kurt Hornik for the suggestion)
-
- -- Dirk Eddelbuettel <edd at debian.org> Mon, 19 Jan 2004 10:45:47 -0600
-
-r-base (1.8.1-1) unstable; urgency=low
-
- * Upgraded to version 1.8.1 released today
-
- * debian/control: Move r-base-html and r-base-latex from the Depends: for
- r-base to Recommends: as one cannot depend on packages of lower priority
- * debian/rules: Use --without-blas on arm
-
- -- Dirk Eddelbuettel <edd at debian.org> Fri, 21 Nov 2003 10:09:48 -0600
-
-r-base (1.8.0.cvs.20031114-1) unstable; urgency=low
-
- * Upgraded to the initial 1.8.1 beta release of 2003-11-14
-
- -- Dirk Eddelbuettel <edd at debian.org> Fri, 14 Nov 2003 19:13:43 -0600
-
-r-base (1.8.0.cvs.20031107-1) unstable; urgency=low
-
- * Upgraded to the initial 1.8.1 alpha release of 2003-11-07
- * debian/rules: Configure with R_PRINTCMD=/usr/bin/lpr (Closes: #219419)
-
- -- Dirk Eddelbuettel <edd at debian.org> Fri, 7 Nov 2003 19:56:48 -0600
-
-r-base (1.8.0.cvs.20031101-1) unstable; urgency=low
-
- * Upgraded to 1.8.0 patched aka pre-1.8.1 as of 2003-11-01
- * Also upgraded R-recommended via rsync
- * debian/rules: make docs has to be called when binary-arch is built
-
- -- Dirk Eddelbuettel <edd at debian.org> Sat, 1 Nov 2003 18:58:09 -0600
-
-r-base (1.8.0.cvs.20031024-1) unstable; urgency=low
-
- * Upgraded to 1.8.0 patched as of 2003-10-24
- * Also upgraded R-recommended via rsync
- * To avoid possible upgrade conflicts with pre-releases of 1.8.1, we
- use previously used ".cvs.YYYYMMDD" naming convention for the package
- * debian/rules: 'make {docs,help,html}' are now called in binary-indep
- which was not possible with earlier versions of R; however as make
- recommended implies make doc, we manually descend into its top dir.
-
- -- Dirk Eddelbuettel <edd at debian.org> Thu, 23 Oct 2003 15:21:35 -0500
-
-r-base (1.8.0-2) unstable; urgency=low
-
- * With a big thanks to Camm Maguire for investigating this problem,
- we are reverting back to the previously used setup of defaulting to
- Blas while automagically switching to Atlas where installed:
- - debian/rules: Patch R.sh.in to disable use of R_LD_LIBRARY_PATH (beyond
- the required $R_HOME/nbin) which conflicts with Debian's transparent
- switch of Atlas for Blas (as /usr/lib/libblas would be found instead)
- - debian/rules: Configure again with --with-blas=blas
- - debian/control: Hence remove Depends: on atlas2-base-dev | atlas2-dev
- - debian/shlibs.local: Remove, no longer needed
- - debian/rules: No longer need to postprocess Depends
- - debian/rules: Other small cleanups
-
- -- Dirk Eddelbuettel <edd at debian.org> Thu, 16 Oct 2003 20:13:32 -0500
-
-r-base (1.8.0-1) unstable; urgency=low
-
- * Upgraded to version 1.8.0 released today
-
- -- Dirk Eddelbuettel <edd at debian.org> Wed, 8 Oct 2003 10:10:41 -0500
-
-r-base (1.7.1.cvs.20031004-1) unstable; urgency=low
-
- * Upgraded to release candidate 1.8.0beta_2003-10-04 of R 1.8.0
- * debian/control: Change Depends: to atlas2-base-dev | atlas2-dev
-
- -- Dirk Eddelbuettel <edd at debian.org> Sat, 4 Oct 2003 07:39:13 -0500
-
-r-base (1.7.1.cvs.20030927-1) unstable; urgency=low
-
- * Upgraded to release candidate 1.8.0beta_2003-09-27 of R 1.8.0
- * debian/control: Add Depends: on atlas2-dev for r-base-dev
-
- -- Dirk Eddelbuettel <edd at debian.org> Sat, 27 Sep 2003 15:58:45 -0500
-
-r-base (1.7.1.cvs.20030920-1) unstable; urgency=low
-
- * Upgraded to release candidate 1.8.0alpha_2003-09-20 of R 1.8.0
- * debian/{r-base-core,r-gnome}.menu: Small beautifications
-
- -- Dirk Eddelbuettel <edd at debian.org> Sat, 20 Sep 2003 08:02:54 -0500
-
-r-base (1.7.1.cvs.20030913-1) unstable; urgency=low
-
- * Upgraded to release candidate 1.8.0alpha_2003-09-13 of R 1.8.0
-
- -- Dirk Eddelbuettel <edd at debian.org> Sat, 13 Sep 2003 09:59:45 -0500
-
-r-base (1.7.1.cvs.20030906-1) unstable; urgency=low
-
- * Upgraded to release candidate 2003-09-06 of R 1.8.0
-
- -- Dirk Eddelbuettel <edd at debian.org> Sat, 6 Sep 2003 15:21:02 -0500
-
-r-base (1.7.1.cvs.20030830-1) unstable; urgency=low
-
- * Upgraded to release candidate 2003-08-30 of R 1.8.0
-
- -- Dirk Eddelbuettel <edd at debian.org> Sat, 30 Aug 2003 09:56:10 -0500
-
-r-base (1.7.1.cvs.20030822-1) unstable; urgency=low
-
- * Upgraded to release candidate 2003-08-22 of R 1.8.0
- * debian/control: Standards-Version increased to 3.6.1.0
-
- -- Dirk Eddelbuettel <edd at debian.org> Fri, 22 Aug 2003 20:25:52 -0500
-
-r-base (1.7.1.cvs.20030814-1) unstable; urgency=low
-
- * Upgraded to release candidate 2003-08-14 of R 1.7.2 (or 1.8.0)
-
- -- Dirk Eddelbuettel <edd at debian.org> Thu, 14 Aug 2003 20:39:05 -0500
-
-r-base (1.7.1.cvs.20030808-1) unstable; urgency=low
-
- * Upgraded to release candidate 2003-08-08 of R 1.7.2 (or 1.8.0)
- * Upstream release candidate sources do not contain the source for the
- r-recommended package so tools/rsync-recommended was used to obtain
- these and a new, Debian-only, orig.tar.gz of both was created
- * debian/control: r-base-dev now has a versioned Depends on r-base-core
- which requires equal version numbers between the two (Closes: #199295)
- * debian/control: Upgraded Standards-Version to 3.6.0
-
- -- Dirk Eddelbuettel <edd at debian.org> Fri, 8 Aug 2003 20:08:49 -0500
-
-r-base (1.7.1-1) unstable; urgency=low
-
- * New upstream version 1.7.1 released today
-
- -- Dirk Eddelbuettel <edd at debian.org> Mon, 16 Jun 2003 19:36:45 -0500
-
-r-base (1.7.0.cvs.20030607-1) unstable; urgency=low
-
- * Upgraded to initial release candidate (dated 2003-06-07) of R 1.7.1
- * debian/{control,rules}: Switch back to default compiler version as 3.3
- is in unstable and testing; m68k still needs f2c for Fortan code
-
- -- Dirk Eddelbuettel <edd at debian.org> Sat, 7 Jun 2003 12:23:59 -0500
-
-r-base (1.7.0.cvs.20030602-1) unstable; urgency=low
-
- * Upgraded to initial release candidate (dated 2003-06-02) of R 1.7.1
- * debian/{rules,control}: Try f2c on m68k as a last resort
-
- -- Dirk Eddelbuettel <edd at debian.org> Mon, 2 Jun 2003 21:31:42 -0500
-
-r-base (1.7.0.cvs.20030526-1) unstable; urgency=low
-
- * Upgraded to release candidate 2003-05-26 of R 1.7.1
- * Manually rsync'ed r-recommendeds sources as R-patched pre-release do
- not comprise r-recommended, also manually re-built upstream tarball
- * debian/control: Require gcc/g++/g77-3.2 as version 3.3 is in unstable
- gcc 3.2 works fine everywhere with the exception of m68k (Closes: #194175)
- * debian/shlibs.local: Have libatlas imply either the actual atlas2-base
- or the virtual atlas2 provided by tuned libraries (Closes: #193831)
- * debian/control: Added 'xpdf-reader | pdf-viewer' to Build-Depends
- * debian/control: Upgraded Standards-Version to 3.5.10
-
- -- Dirk Eddelbuettel <edd at debian.org> Mon, 26 May 2003 19:47:20 -0500
-
-r-base (1.7.0-3) unstable; urgency=low
-
- * debian/rules: No longer configure for use of an external lapack library
- as some numerical infelicities have come up on shore.
- * debian/rules: Now call configure --with-blas=atlas for Atlas / Blas
- * debian/shlibs.local: add '| blas | blas2' to 'libatlas 2 atlas2-base'
- * debian/control: r-gnome Recommends: r-cran-gtkdevice (Closes: #190735)
-
- -- Dirk Eddelbuettel <edd at debian.org> Mon, 28 Apr 2003 20:56:54 -0500
-
-r-base (1.7.0-2) unstable; urgency=low
-
- * debian/control: r-recommended Description updates w.r.t. MASS edition
- * debian/rules: Remove Depends of r-recommended on atlas2-base as it is
- neither 'virtual' nor required as r-recommnded itself depends on
- r-base-core so that we get its Depends on atlas2-base | blas2 | blas
-
- -- Dirk Eddelbuettel <edd at debian.org> Sun, 20 Apr 2003 20:18:56 -0500
-
-r-base (1.7.0-1) unstable; urgency=low
-
- * New upstream release
-
- -- Douglas Bates <bates at stat.wisc.edu> Wed, 16 Apr 2003 10:43:57 -0500
-
-r-base (1.6.2.cvs.20030413-1) unstable; urgency=low
-
- * Upgraded to release candidate dated 2003-04-13 of R 1.7.0
- * debian/control: Section set to gnome for r-gnome
- * debian/r-recommended.preinst: rm doc dir (Closes: #188995)
-
- -- Dirk Eddelbuettel <edd at debian.org> Mon, 14 Apr 2003 20:35:32 -0500
-
-r-base (1.6.2.cvs.20030409-1) unstable; urgency=low
-
- * Upgraded to release candidate dated 2003-04-09 of R 1.7.0
- * debian/rules: Hack result of dh_shlibdeps with Perl to remove the
- double atlas2 entry caused by the virtual depends on blas and lapack
- * debian/rules: Small improvement to R_LIBS patch to conform with
- standard of respecting prior settings, if any, of the variable
- * debian/control: Upgraded Standards-Version to 3.5.9
-
- -- Dirk Eddelbuettel <edd at debian.org> Wed, 9 Apr 2003 23:09:00 -0500
-
-r-base (1.6.2.cvs.20030405-1) unstable; urgency=low
-
- * Upgraded to release candidate dated 2003-04-05 of R 1.7.0
- * debian/rules: Configure with --with-blas, not --with-blas=blas
- * debian/r-base-core.prerm: s/treu/true/
- * debian/rules: Link $R_HOME/doc into /usr/share/doc/r-base-core, rather
- than its subdirectories doc and manual as e.g. manual link could be
- dangling if r-doc-pdf is not installed (Closes: #187573)
-
- -- Douglas Bates <bates at stat.wisc.edu> Sat, 5 Apr 2003 08:35:37 -0600
-
-r-base (1.6.2.cvs.20030403-1) unstable; urgency=low
-
- * Upgraded to release candidate dated 2003-04-03 of R 1.7.0
- * debian/rules: Add R_LIBS setting to /etc/R/Renviron such that
- user-installed packages will be in /usr/local/lib/R/site-library,
- Debian packages will install into /usr/lib/R/site-library and
- the r-base-core and r-recommended packages will use the standard
- /usr/lib/R/library directory
- * debian/r-base-core.dirs: Add /usr/lib/R/site-library
- * debian/r-base-core.postinst: Add failsafe creation of directory
- /usr/local/lib/R/site-library as per Policy section 10.1.2
- * debian/r-base-core.prerm: Add failsafe creation of directory
- /usr/local/lib/R/site-library as per Policy section 10.1.2
-
- -- Dirk Eddelbuettel <edd at debian.org> Thu, 3 Apr 2003 10:16:06 -0600
-
-r-base (1.6.2.cvs.20030331-1) unstable; urgency=low
-
- * Upgraded to release candidate dated 2003-03-30 of R 1.7.0
- * debian/control: Added lapack-dev to Depends for r-base-dev
- * debian/rules: Removed rrecommended tests
-
- -- Dirk Eddelbuettel <edd at debian.org> Mon, 31 Mar 2003 09:01:22 -0600
-
-r-base (1.6.2.cvs.20030330-1) unstable; urgency=low
-
- * Upgraded to release candidate dated 2003-03-30 of R 1.7.0
- * Upstream sources fix the problem reported in #186857 (Closes: #186857)
-
- -- Douglas Bates <bates at stat.wisc.edu> Sun, 30 Mar 2003 16:08:48 -0600
-
-r-base (1.6.2.cvs.20030326-1) unstable; urgency=low
-
- * Upgraded to release candidate dated 2003-03-26 of R 1.7.0
- * debian/rules: Configure with --with-lapack
- * debian/control: Build-Depends on lapack-dev
- * debian/rules: Explicitly use gcc/g77/g++-3.2 for builds on testing
- * debian/r-gnome.menu: The Needs: entry was corrected to "x11"
-
- -- Dirk Eddelbuettel <edd at debian.org> Wed, 26 Mar 2003 09:19:07 -0600
-
-r-base (1.6.2-2) unstable; urgency=low
-
- * Rebuilding on Debian unstable with gcc/g++/g77 as the new default
- * debian/control: Depends g77 (>= 3.2.2), g++ (>= 3.2.2) for r-base{,-dev}
- * debian/rules: Adjusted accordingly by defaulting to gcc, g++, g77
-
- -- Dirk Eddelbuettel <edd at debian.org> Sat, 18 Jan 2003 20:21:21 -0600
-
-r-base (1.6.2-1) unstable; urgency=low
-
- * New upstream version 1.6.2 released today
- * debian/r-base-core.lintian: Added exceptions for
- image-file-in-usr-lib usr/lib/R/doc/html/{left,logo,logosm,right,up}.jpg
- * debian/rules: Substitute Perl path to /usr/bin/perl for
- usr/lib/R/bin/{Rdconv,Rdindex,Rprof,Sd2Rd,build,check}
-
- -- Dirk Eddelbuettel <edd at debian.org> Fri, 10 Jan 2003 20:30:26 -0600
-
-r-base (1.6.1.cvs.20030103-1) unstable; urgency=low
-
- * Upgraded to release candidate dated 2003-01-03 of R 1.6.2
-
- -- Douglas Bates <bates at stat.wisc.edu> Fri, 3 Jan 2003 09:42:18 -0600
-
-r-base (1.6.1.cvs.20021230-1) unstable; urgency=low
-
- * Upgraded to release candidate dated 2002-12-30 of R 1.6.2
- * Added Douglas Bates as an Uploader following email discussion with Dirk
-
- -- Douglas Bates <bates at stat.wisc.edu> Mon, 30 Dec 2002 20:43:24 -0600
-
-r-base (1.6.1-3) unstable; urgency=low
-
- * debian/{control,rules}: Configure switch from f2c to g77 for m68k
- * debian/{control,rules}: Configure switch from tcl/tk8.3 to tcl/tk8.4
- * debian/control: Added libpaperg-dev to Build-Depends (Closes: #168259)
- * debian/r-base-control: Substitute result from paperconf call
- into $R_HOME/etc/Renviron, not /usr/bin/R
- * debian/rules: Move $R_HOME/etc/* files into /etc/R/ (Closes: #170018)
-
- -- Dirk Eddelbuettel <edd at debian.org> Thu, 28 Nov 2002 07:49:49 -0600
-
-r-base (1.6.1-2) unstable; urgency=low
-
- * Rebuilt with support for bzip2 (compression) and pcre (reg.expressions)
- * debian/control: Added libbz2-dev and libpcre3-dev to Build-Depends
- * debian/rules: Set R_BROWSER to /usr/bin/mozilla in $R_HOME/etc/Renviron
-
- -- Dirk Eddelbuettel <edd at debian.org> Mon, 11 Nov 2002 13:26:27 -0600
-
-r-base (1.6.1-1) unstable; urgency=low
-
- * Upgraded to R version 1.6.1 released today
-
- -- Dirk Eddelbuettel <edd at debian.org> Fri, 1 Nov 2002 16:56:50 -0600
-
-r-base (1.6.0.rel.20021024-1) unstable; urgency=low
-
- * Upgraded to release candidate dated 2002-10-24 of R 1.6.1
- * debian/control: Set section for r-base-dev to devel
- * debian/r-doc-info.prerm: Add upgrade target
-
- -- Dirk Eddelbuettel <edd at debian.org> Thu, 24 Oct 2002 21:01:49 -0500
-
-r-base (1.6.0.rel.20021017-1) unstable; urgency=low
-
- * Upgraded to first release candidate (dated 2002-10-17) of R 1.6.1
- * Since 1.6.0, the R Core upstream stream now bundles the sources
- of the r-recommended package directly in the r-base sources -- thus
- the source package r-recommended will be replaced by a binary
- package derived from these sources
- * debian/control: Added new package r-recommended
- * debian/r-recommended.{files,links}: Defined accordingly
- * debian/copyright: Include the copyright file from r-recommended
-
- -- Dirk Eddelbuettel <edd at debian.org> Thu, 17 Oct 2002 20:53:49 -0500
-
-r-base (1.6.0.rel-1) unstable; urgency=low
-
- * Upgraded to new upstream release 1.6.0 [ which we need to rename
- 1.6.0.rel so that is sorts higher than 1.6.0.rc.20020927 ]
-
- -- Dirk Eddelbuettel <edd at debian.org> Tue, 1 Oct 2002 21:18:52 -0500
-
-r-base (1.6.0.rc.20020927-1) unstable; urgency=low
-
- * Upgraded to new release candidate of R 1.6.0
-
- -- Dirk Eddelbuettel <edd at debian.org> Thu, 26 Sep 2002 20:49:34 -0500
-
-r-base (1.6.0.rc.20020917-1) unstable; urgency=low
-
- * Upgraded to new release candidate of R 1.6.0
-
- -- Dirk Eddelbuettel <edd at debian.org> Mon, 16 Sep 2002 20:41:58 -0500
-
-r-base (1.6.0.rc.20020910-1) unstable; urgency=low
-
- * First release candidate of R 1.6.0 which is scheduled to be released on
- October 1, 2002 -- this release corresponds to the first feature freeze
- * debian/control: More Suggests: of the r-doc-* packages
-
- -- Dirk Eddelbuettel <edd at debian.org> Mon, 9 Sep 2002 20:53:41 -0500
-
-r-base (1.5.1-0woody1) woody-proposed-updates; urgency=low
-
- * Backport for woody built against atlas with corrected virtual Depends
- on blas/atlas to prevent bugs like #150253 and #152284 in woody
- * debian/rules: Use "-O0 -g0" on arm and m68k to shorten compile time
- * debian/control: Added lib{ncurses5,readline4}-dev to r-base-dev Depends
-
- -- Dirk Eddelbuettel <edd at debian.org> Mon, 15 Jul 2002 21:19:51 -0500
-
-r-base (1.5.1-1) unstable; urgency=low
-
- * Upgraded to new upstream release 1.5.1
- * debian/rules: Also create link from libRmath.so to libRmath.so.1
- * debian/rules: Include test.c example in r-mathlib (Closes: #149723)
- * debian/README.mathlib: Added, includes src/nmath/standalone/README
-
- -- Dirk Eddelbuettel <edd at debian.org> Mon, 17 Jun 2002 19:24:59 -0500
-
-r-base (1.5.0-3) unstable; urgency=low
-
- * debian/r-doc-html.links: Link into /usr/lib/R/doc/manual (Closes: #148628)
- * debian/r-doc-pdf.links: Idem
-
- -- Dirk Eddelbuettel <edd at debian.org> Sat, 8 Jun 2002 11:52:14 -0500
-
-r-base (1.5.0-2) unstable; urgency=low
-
- * debian/rules: Remove usr/share/info/dir{,.old} (Closes: #148054)
-
- -- Dirk Eddelbuettel <edd at debian.org> Mon, 27 May 2002 15:31:22 -0500
-
-r-base (1.5.0-1) unstable; urgency=low
-
- * Upgraded to new upstream release 1.5.0
-
- -- Dirk Eddelbuettel <edd at debian.org> Mon, 29 Apr 2002 18:23:59 -0500
-
-r-base (1.4.1.cvs20020421-1) unstable; urgency=low
-
- * Upgraded to new release candidate 2002-04-21 of R 1.5.0
- * debian/control: Added virtual fortran77-compiler, c-compiler to the
- list of alternative compilers that r-base-dev Depends: on
-
- -- Dirk Eddelbuettel <edd at debian.org> Sun, 21 Apr 2002 19:01:57 -0500
-
-r-base (1.4.1.cvs20020414-1) unstable; urgency=low
-
- * Upgraded to new release candidate 2002-04-14 of R 1.5.0
-
- -- Dirk Eddelbuettel <edd at debian.org> Sat, 13 Apr 2002 20:48:59 -0500
-
-r-base (1.4.1.cvs20020407-1) unstable; urgency=low
-
- * Upgraded to new release candidate 2002-04-07 of R 1.5.0
-
- -- Dirk Eddelbuettel <edd at debian.org> Sun, 7 Apr 2002 07:59:43 -0500
-
-r-base (1.4.1.cvs20020331-1) unstable; urgency=low
-
- * Upgraded to new release candidate 2002-03-23 of R 1.5.0
-
- * debian/control: Build-Depends on texinfo (>= 4.1-2) to ensure that
- we will not be bitten by the epsf.tex bug
-
- -- Dirk Eddelbuettel <edd at debian.org> Sun, 31 Mar 2002 08:55:08 -0600
-
-r-base (1.4.1.cvs20020323-1) unstable; urgency=low
-
- * Upgraded to new release candidate 2002-03-23 of R 1.5.0
-
- * debian/control: New packages r-base-core, r-base-html, r-base-latex
- and r-doc-info have been split from the old r-base package which now
- Depends: on these, but can also be removed -- this adds some extra
- flexibility and can save over eight megabytes of installed files.
- * debian/control: Replaces: r-base (<= 1.4.1-1) for the new packages
-
- * debian/rules: Fortan compiler selection adapted to new upstream configure
- * debian/control: r-base Suggests: r-base-dev instead of gcc
- * debian/copyright: Updated and included current COPYRIGHTS file ...
- * debian/rules: ... and therefore do not install COPYRIGHTS separately
- * debian/control: Added Build-Depends on texi2html (split from tetex-bin)
-
- -- Dirk Eddelbuettel <edd at debian.org> Sat, 23 Mar 2002 11:17:48 -0600
-
-r-base (1.4.1-1) unstable; urgency=low
-
- * Upgraded to new upstream release 1.4.1
-
- -- Dirk Eddelbuettel <edd at debian.org> Wed, 30 Jan 2002 18:50:34 -0600
-
-r-base (1.4.0.cvs20020124-1) unstable; urgency=low
-
- * Upgraded to the R-patched_2002-01-24 release candidate for 1.4.1
-
- -- Dirk Eddelbuettel <edd at debian.org> Thu, 24 Jan 2002 19:38:34 -0600
-
-r-base (1.4.0-1) unstable; urgency=low
-
- * Upgraded to new upstream release 1.4.0
- * debian/control: Add lib{zvt,gtkxmhtml}-dev to Build-Depends [thanks, Doug]
- * debian/control: Fixed hppa Build-Depends [thanks, Matthew Wilcox]
- * debian/rules: Minor cleanup regarding configuration options
- * debian/control: Changed Priority: from extra to optional
- * debian/control: Corrected r-doc-html Description [thanks, Doug Bates]
- * debian/control: Spelling corrections (Closes: #125300)
-
- -- Dirk Eddelbuettel <edd at debian.org> Wed, 19 Dec 2001 18:47:46 -0600
-
-r-base (1.3.1-6) unstable; urgency=low
-
- * debian/rules: Also apply s/-lg2c/-lg2c-pic/ on etc/Makeconf
- * debian/control: Revert to Arch: all for doc packages, no Depends r-base
- * debian/control: r-base-dev Depends remodelled on r-base Build-Depends
-
- -- Dirk Eddelbuettel <edd at debian.org> Mon, 3 Dec 2001 21:58:40 -0600
-
-r-base (1.3.1-5) unstable; urgency=low
-
- * debian/rules: Unset CPPFLAGS, LIBS before calling configure to not
- leave traces of /usr/local. Thanks, Kurt Hornik (Closes: #71917)
- * debian/rules: More s/-lg2c/-lg2c-pic/ substitution in src/library/
- * debian/control: Added new package r-mathlib (Closes: #119701)
- * debian/control: Added new package r-doc-html (R manuals in html format)
- * debian/rules: Added suitable rules for r-mathlib and r-doc-html
- * debian/rules: Rewritten/cleaned for DH_COMPAT=3
-
- -- Dirk Eddelbuettel <edd at debian.org> Fri, 16 Nov 2001 20:43:24 -0600
-
-r-base (1.3.1-4) unstable; urgency=low
-
- * debian/control: Corrected maintainer email
- * debian/rules: Do not run 'make check' on arm as it stumbles over the
- Bessel example; this known misfeature has long been reported upstream
- * debian/README.Atlas: Updated to reflect autoMAGIC loading of Atlas lib
- with ldconfig from libc6_2.2.4-5 or later -- thanks, Ben Collins!
-
- -- Dirk Eddelbuettel <edd at debian.org> Sun, 11 Nov 2001 11:19:10 -0600
-
-r-base (1.3.1-3) unstable; urgency=low
-
- * New maintainer
- * debian/rules: Substitute -lg2c-pic for -lg2c in Makeconf [Thanks, Jeff!]
- * debian/control: Following advice from the Release Manager, let r-doc-pdf
- and r-base-dev be Arch: any as they Depends: on r-base itself
- * debian/rules: configure with tkConfig.sh,tclConfig.sh for 8.3 support
- * debian/control: Build-Depends on tcl8.3-dev and tk8.3-dev
- * debian/rules: Let ia64 use gcc-3.0, g77-3.0, g++-3.0
- * debian/control: Build-Depends adjusted accordingly
-
- -- Dirk Eddelbuettel <edd at debian.org> Fri, 9 Nov 2001 20:17:43 -0600
-
-r-base (1.3.1-2) unstable; urgency=low
-
- * Non-maintainer upload, coordinated with the maintainer
- * Fixed local teTeX issue so that pdf manuals are built (Closes: #112184)
- * debian/*.links: link r-doc-pdf, r-gnome, r-base-dev doc dir to r-base
- * debian/*.preinst: rm doc dir for r-doc-pdf, r-gnome, r-base-dev
- * debian/control: r-base-dev and r-doc-pdf now depend on r-base
-
- -- Dirk Eddelbuettel <edd at debian.org> Fri, 14 Sep 2001 21:53:24 -0500
-
-r-base (1.3.1-1) unstable; urgency=low
-
- * Non-maintainer upload, coordinated with the maintainer
- * Upgraded to new upstream release 1.3.1
- * src/scripts/R.sh.in: Modified to detect libs from /etc/ld.so.conf so
- that Atlas is now used automatically when installed, providing very
- significant performance gains. Thanks for Kurt Hornik for the sed magic.
- * debian/control: Build-Depends for f2c on m68k, g77 everywhere else
- * debian/rules: Use f2c on m68k, g77 everywhere else
- * debian/rules: Compile with -O on m68k, -O2 everywhere else. Thanks
- to Christian Steigies for countless m68k tests and compilations
- * debian/r-base.lintian: Added Lintian excpeptions clauses:
- -- for files not under md5sum creation as their content changes
- -- for spurious 'extra license' on license() command documentation
- * debian/rules: Also remove redundant /usr/lib/R/COPYING.LIB, but add
- soft links for both GPL (to COPYING) and LGPL (to COPYING.LIB)
-
- -- Dirk Eddelbuettel <edd at debian.org> Tue, 4 Sep 2001 22:28:49 -0500
-
-r-base (1.3.0-4) unstable; urgency=low
-
- * Non-maintainer brown-bag release
- * debian/control: Revert back to tcl and tk version 8.0
- * debian/rules: Split off distinct configure and make targets
-
- -- Dirk Eddelbuettel <edd at debian.org> Fri, 24 Aug 2001 09:30:17 -0500
-
-r-base (1.3.0-3) unstable; urgency=low
-
- * Non-maintainer upload, coordinated with the maintainer
- * debian/rules: Default to --with-blas=blas (available on 9 architectures),
- Atlas can dynamically override this where available (Closes: #105366)
- * debian/control: Changed atlas reference to blas for Build-Depends,
- requires versioned Build-Depends on blas-dev (>= 1.0-9)
- * debian/rules: Added link for manual below r-base/doc (Closes: #106315)
- * debian/control: Upgraded Build-Depends: on tk and tcl to versions 8.3
- * debian/control: Upgraded Standards-Version: to 3.5.0
- * debian/control: Added r-recommended to Suggests:
- * debian/rules: Remove modules/*.so on clean
- * debian/README.Atlas: Added simple README file on Atlas
- * doc/manual/Makefile.in: Added --no-split to makeinfo --html calls
- * config.site: gcc-3.0 removed in -2 (Closes: #109030)
- * debian/control: Make was added to Depends in -2 (Closes: #102831)
-
- -- Dirk Eddelbuettel <edd at debian.org> Tue, 21 Aug 2001 22:33:00 -0500
-
-r-base (1.3.0-2) unstable; urgency=low
-
- * Changed compiler back to gcc from gcc-3.0
- * Added dependency of r-base-dev on make (Closes: #102831)
- * Removed dependency of r-base-dev on wget|lynx
-
- -- Douglas Bates <bates at stat.wisc.edu> Fri, 6 Jul 2001 17:33:20 -0500
-
-r-base (1.3.0-1) unstable; urgency=low
-
- * New upstream release
- * Changed build-depends on groff to groff-base
- * Changed build of r-gnome package for R's new module architecture
- * Added Dirk E.'s changes to rules and control so atlas is used only on
- selected architectures.
-
- -- Douglas Bates <bates at stat.wisc.edu> Fri, 29 Jun 2001 09:29:47 -0500
-
-r-base (1.2.3-1) unstable; urgency=low
-
- * New upstream release
-
- -- Douglas Bates <bates at stat.wisc.edu> Sun, 20 May 2001 20:51:58 -0500
-
-r-base (1.2.2-2) unstable; urgency=low
-
- * Corrected format of Closes line (see 1.2.2-1). (Closes: #83876)
- * Added more build-depends entries. (Closes: #89267)
-
- -- Douglas Bates <bates at stat.wisc.edu> Sun, 11 Mar 2001 10:26:36 -0600
-
-r-base (1.2.2-1) unstable; urgency=low
-
- * New upstream release.
- * Added build-depends entries. (Closes #83876)
-
- -- Douglas Bates <bates at stat.wisc.edu> Tue, 27 Feb 2001 12:50:13 -0600
-
-r-base (1.2.1-1) unstable; urgency=low
-
- * New upstream release.
-
- -- Douglas Bates <bates at stat.wisc.edu> Mon, 15 Jan 2001 07:01:21 -0600
-
-r-base (1.2.0-1) unstable; urgency=low
-
- * New upstream release.
- * Added the r-base-dev package to create the correct dependencies for
- installing R packages from CRAN (Comprehensive R Archive Network)
-
- -- Douglas Bates <bates at stat.wisc.edu> Fri, 15 Dec 2000 07:20:51 -0600
-
-r-base (1.1.0-1) unstable; urgency=low
-
- * New upstream release.
-
- -- Douglas Bates <bates at stat.wisc.edu> Sat, 17 Jun 2000 13:11:26 -0500
-
-r-base (1.0.1-1) unstable; urgency=low
-
- * New upstream release.
- * Includes fix for problem with xaxt and yaxt (Closes #61984)
-
- -- Douglas Bates <bates at stat.wisc.edu> Sun, 16 Apr 2000 13:50:06 -0500
-
-r-base (1.0.0-2) unstable; urgency=low
-
- * The pdf documentation is now in a new package r-doc-pdf
- * A GNOME-enabled version is available in a new package r-gnome (Closes #44503)
- * debian/{rules,control}: Modified accordingly
- * Thanks to Dirk Eddelbuettel who did most of the work for this.
-
- -- Douglas Bates <bates at stat.wisc.edu> Thu, 16 Mar 2000 16:28:07 -0600
-
-r-base (1.0.0-1) unstable; urgency=low
-
- * New upstream version
- * Fixed names of info files, readline support (Closes: #57774)
- * Added pdf files to doc directory (Closes: #20227)
-
- -- Douglas Bates <bates at stat.wisc.edu> Thu, 9 Mar 2000 16:28:29 -0600
-
-r-base (0.99.0-2) unstable; urgency=low
-
- * Small but important bug fixes in upstream sources
- * Removed dependence on atlas2 - using blas1 instead
- * Recompiled to use the readline library
-
- -- Douglas Bates <bates at stat.wisc.edu> Sun, 13 Feb 2000 14:23:25 -0600
-
-r-base (0.99.0-1) unstable; urgency=low
-
- * New upstream release
- * Added creation and installation of info documentation
- * Created the PDF documentation and added it to the doc directory
- * Added dependence on the atlas2 package and used the atlas blas
- * Added /usr/bin/X11 to the path before configuring so imake is found
-
- -- Douglas Bates <bates at stat.wisc.edu> Mon, 7 Feb 2000 10:36:44 -0600
-
-r-base (0.90.1-1) unstable; urgency=low
-
- * New upstream release
-
- -- Douglas Bates <bates at stat.wisc.edu> Tue, 14 Dec 1999 10:51:10 -0600
-
-r-base (0.90.0-2) unstable; urgency=low
-
- * added Conflicts: r-cran in control (Closes: #51673)
- * Reinstated -Xfoo flags in call to dh_md5sums for Bug#35744
- * Set up --mandir so package builds with -rfakeroot (Closes: #51901)
- * Undid Dirk's marking of Rd2txt.1 Rdindex.1 Sd2Rd.1 as undocumented
- (the manual pages are symbolic links to the Rdconv.1 page)
-
- -- Douglas Bates <bates at stat.wisc.edu> Sun, 5 Dec 1999 15:03:52 -0600
-
-r-base (0.90.0-1) unstable; urgency=low
-
- * Non-maintainer upload dealing with the usr/doc to usr/share/doc
- transition, as well as a few other lintian errors and warnings
- * debian/postinst: added #DEBHELPER# stub
- * debian/rules: configure with mandir=/usr/share/man
- * debian/rules: remove extra licenses
- * debian/rules: also install docs BUGS PLATFORMS VERSION Y2K
- * debian/rules: mark Rd2txt.1 Rdindex.1 Sd2Rd.1 as undocumented
- * debian/dirs: change usr/doc to usr/share/doc
-
- -- Dirk Eddelbuettel <edd at debian.org> Thu, 25 Nov 1999 20:46:56 -0500
-
-r-base (0.90.0-0) unstable; urgency=low
-
- * new upstream release
- * Added a "suggests" entry in control for the ess package
-
- -- Douglas Bates <bates at stat.wisc.edu> Thu, 25 Nov 1999 13:08:19 -0600
-
-r-base (0.65.1-2) unstable; urgency=low
-
- * Changed from use of zip/unzip to minizip/miniunzip (Bug#48742)
-
- -- Douglas Bates <bates at stat.wisc.edu> Sat, 30 Oct 1999 15:04:42 -0500
-
-r-base (0.65.1-1) unstable; urgency=low
-
- * New upstream release
-
- -- Douglas Bates <bates at stat.wisc.edu> Fri, 8 Oct 1999 10:04:55 -0500
-
-r-base (0.65.0-1) unstable; urgency=low
-
- * New upstream release
- * Added dependency on unzip package
-
- -- Douglas Bates <bates at stat.wisc.edu> Fri, 27 Aug 1999 09:30:14 -0500
-
-r-base (0.64.2-1) unstable; urgency=low
-
- * New upstream release
- * Changed dependency from perl to perl5 as per new policy.
-
- -- Douglas Bates <bates at stat.wisc.edu> Thu, 1 Jul 1999 09:05:03 -0500
-
-r-base (0.64.1-1) unstable; urgency=low
-
- * New upstream release
- * Change definition of RHOME in /usr/lib/R/bin/R shell script (Bug#37339)
- * Add links so /usr/lib/R/doc/manual .tex files can be LaTeX'd (Hubert Palme)
- * Re-introduced md5sum's but with files that can change removed (Bug#35744)
- * Removed arbitrary --vsize and --nsize flags in R script.
-
- -- Douglas Bates <bates at stat.wisc.edu> Wed, 12 May 1999 11:48:22 -0500
-
-r-base (0.64.0-2) unstable; urgency=low
-
- * removed md5sums from control information (Bug#35744)
-
- -- Douglas Bates <bates at stat.wisc.edu> Thu, 8 Apr 1999 08:48:32 -0500
-
-r-base (0.64.0-1) unstable; urgency=low
-
- * New upstream release
-
- -- Douglas Bates <bates at stat.wisc.edu> Thu, 1 Apr 1999 11:03:17 -0600
-
-r-base (0.63.3-2) unstable; urgency=low
-
- * Recompile for glibc2.1 to fix __setfpucw bug (Bug#34598)
-
- -- Douglas Bates <bates at stat.wisc.edu> Wed, 17 Mar 1999 13:42:41 -0600
-
-r-base (0.63.3-1) unstable; urgency=low
-
- * New upstream release
-
- -- Douglas Bates <bates at stat.wisc.edu> Thu, 4 Mar 1999 09:20:41 -0600
-
-r-base (0.63.2-1) unstable; urgency=low
-
- * New upstream release
-
- -- Douglas Bates <bates at stat.wisc.edu> Fri, 15 Jan 1999 09:25:20 -0600
-
-r-base (0.63.1-1) unstable; urgency=low
-
- * New upstream release
- * Linked html directory to /usr/doc/r-base/doc/html (Dirk Eddelbuettel)
-
- -- Douglas Bates <bates at stat.wisc.edu> Fri, 4 Dec 1998 14:22:19 -0600
-
-r-base (0.63.0-2) unstable; urgency=low
-
- * recompiled against libc6-dev_2.0.7u-6 for __register_frame_info fix
-
- -- Douglas Bates <bates at stat.wisc.edu> Sun, 29 Nov 1998 15:39:48 -0600
-
-r-base (0.63.0-1) unstable; urgency=low
-
- * New upstream release
-
- -- Douglas Bates <bates at stat.wisc.edu> Wed, 18 Nov 1998 13:33:58 -0600
-
-r-base (0.62.4-1) frozen unstable; urgency=low
-
- * New upstream release
- * Fixed link to html directory in /usr/doc (Closes: Bug#26444)
- * Check for /usr/bin/paperconf in postinst and set default R_PAPERSIZE (Closes: #26447)
- * Remove src/lib directory in debian/rules clean (Closes: #28545)
-
- -- Douglas Bates <bates at stat.wisc.edu> Mon, 2 Nov 1998 09:29:20 -0600
-
-r-base (0.62.3-0) unstable; urgency=low
-
- * New upstream release
-
- -- Douglas Bates <bates at stat.wisc.edu> Wed, 19 Aug 1998 10:38:08 -0500
-
-r-base (0.62.2-2) unstable; urgency=low
-
- * Cleaned up the build process by removing redundancies in config.site
- and debian/rules.
- * Changed C compiler to gcc instead of egcs.
-
- -- Douglas Bates <bates at stat.wisc.edu> Fri, 14 Aug 1998 13:52:34 -0500
-
-r-base (0.62.2-1) unstable; urgency=low
-
- * Re-configured to include the readline library
-
- -- Douglas Bates <bates at stat.wisc.edu> Fri, 14 Aug 1998 11:38:35 -0500
-
-r-base (0.62.2-0) unstable; urgency=low
-
- * New upstream version
-
- -- Douglas Bates <bates at stat.wisc.edu> Tue, 14 Jul 1998 13:36:15 -0500
-
-r-base (0.62.1-2) unstable; urgency=low
-
- * Corrected definition of RHOME in /usr/bin/R (bug#23621)
-
- * Changed default heap size to 8 Mb. and number of cons cells to 400000
-
- -- Douglas Bates <bates at stat.wisc.edu> Wed, 17 Jun 1998 11:48:28 -0500
-
-r-base (0.62.1-1) unstable; urgency=low
-
- * new upstream release
-
- -- Douglas Bates <bates at stat.wisc.edu> Tue, 16 Jun 1998 10:03:49 -0500
-
-r-base (0.61.3-0) unstable; urgency=low
-
- * new upstream release
-
- -- Douglas Bates <bates at stat.wisc.edu> Mon, 4 May 1998 12:05:53 -0500
-
-r-base (0.61.2-2) frozen unstable; urgency=low
-
- * recompiled against xlib6g (bug #21027)
-
- -- Douglas Bates <bates at stat.wisc.edu> Mon, 13 Apr 1998 14:05:33 -0500
-
-r-base (0.61.2-1) frozen unstable; urgency=low
-
- * Added symbolic link for /usr/lib/R/library in /usr/doc/r-base/ (bug#20190)
-
- -- Douglas Bates <bates at stat.wisc.edu> Thu, 26 Mar 1998 14:01:57 -0600
-
-r-base (0.61.2-0) unstable; urgency=low
-
- * New upstream release.
-
- -- Douglas Bates <bates at stat.wisc.edu> Mon, 9 Mar 1998 15:22:31 -0600
-
-r-base (0.61.1-5) unstable; urgency=low
-
- * Removed call to dh_du in build rules.
-
- -- Douglas Bates <bates at stat.wisc.edu> Fri, 6 Mar 1998 13:47:54 -0600
-
-r-base (0.61.1-4) unstable; urgency=low
-
- * Removed unnecessary call to dh_makeshlibs in build rules
-
- -- Douglas Bates <bates at stat.wisc.edu> Mon, 16 Feb 1998 13:49:44 -0600
-
-r-base (0.61.1-3) unstable; urgency=low
-
- * Re-compiled to add readline support.
-
- -- Douglas Bates <bates at stat.wisc.edu> Sat, 17 Jan 1998 17:06:52 -0600
-
-r-base (0.61.1-2) unstable; urgency=low
-
- * Ensured that libraries for the modules are dynamically linked.
-
- -- Douglas Bates <bates at stat.wisc.edu> Wed, 14 Jan 1998 08:31:53 -0600
-
-r-base (0.61.1-1) unstable; urgency=low
-
- * New upstream release
-
- -- Douglas Bates <bates at stat.wisc.edu> Mon, 12 Jan 1998 09:30:04 -0600
-
-r-base (0.61.0-3) unstable; urgency=low
-
- * Went through all the warnings reported by -Wall to produce a patch
- file for the developers.
- * Applied Thomas Lumley's patch for problem with c() applied to ordered.
- * Changed debian/rules to delete the .in files for autoconf from the
- package
-
- * Changed priority to "optional"
- * Modified to use pristine original sources.
-
- -- Douglas Bates <bates at stat.wisc.edu> Sun, 4 Jan 1998 14:54:04 -0600
-
-r-base (0.61.0-2) unstable; urgency=low
-
- * Modified the format of the orig.tar.gz file
-
- -- Douglas Bates <bates at stat.wisc.edu> Tue, 23 Dec 1997 12:02:09 -0600
-
-r-base (0.61.0-1) unstable; urgency=low
-
- * Initial release
-
- -- Douglas Bates <bates at stat.wisc.edu> Tue, 23 Dec 1997 10:01:21 -0600
-
diff --git a/debian/compat b/debian/compat
deleted file mode 100644
index 7f8f011..0000000
--- a/debian/compat
+++ /dev/null
@@ -1 +0,0 @@
-7
diff --git a/debian/control b/debian/control
deleted file mode 100644
index abe7868..0000000
--- a/debian/control
+++ /dev/null
@@ -1,375 +0,0 @@
-Source: r-base
-Section: gnu-r
-Priority: optional
-Maintainer: Dirk Eddelbuettel <edd at debian.org>
-Standards-Version: 3.9.6
-Build-Depends: gcc (>= 4:4.1.0), g++ (>= 4:4.1.0), gfortran (>= 4:4.1.0), libblas-dev, liblapack-dev (>= 3.1.1), tcl8.6-dev, tk8.6-dev, bison, groff-base, libncurses5-dev, libreadline-dev, debhelper (>= 7.2.3), texinfo (>= 4.1-2), libbz2-dev, liblzma-dev, libpcre3-dev, libcurl4-openssl-dev | libcurl4-dev, xdg-utils, zlib1g-dev, libpng-dev, libjpeg-dev, libx11-dev, libxt-dev, x11proto-core-dev, libpango1.0-dev, libcairo2-dev, libtiff5-dev, xvfb, xauth, xfonts-base, texlive-base, texlive-l [...]
-Homepage: http://www.r-project.org/
-
-Package: r-base
-Architecture: all
-Depends: ${misc:Depends}, r-base-core (>= ${source:Version}), r-recommended (= ${source:Version})
-Recommends: r-base-html, r-doc-html
-Suggests: ess, r-doc-info | r-doc-pdf
-Description: GNU R statistical computation and graphics system
- R is a system for statistical computation and graphics. It consists
- of a language plus a run-time environment with graphics, a debugger,
- access to certain system functions, and the ability to run programs
- stored in script files.
- .
- The design of R has been heavily influenced by two existing languages:
- Becker, Chambers & Wilks' S and Sussman's Scheme. Whereas the
- resulting language is very similar in appearance to S, the underlying
- implementation and semantics are derived from Scheme.
- .
- The core of R is an interpreted computer language which allows
- branching and looping as well as modular programming using functions.
- Most of the user-visible functions in R are written in R. It is
- possible for the user to interface to procedures written in the
- C, C++, or FORTRAN languages for efficiency, and many of R's core
- functions do so. The R distribution contains functionality for a
- large number of statistical procedures and underlying applied math
- computations. There is also a large set of functions which provide
- a flexible graphical environment for creating various kinds of data
- presentations.
- .
- Additionally, several thousand extension "packages" are available from
- CRAN, the Comprehensive R Archive Network, many also as Debian packages,
- named 'r-cran-<name>'.
- .
- This package is a metapackage which eases the transition from the
- pre-1.5.0 package setup with its larger r-base package. Once installed, it
- can be safely removed and apt-get will automatically upgrade its components
- during future upgrades. Providing this package gives a way to users to
- then only install r-base-core if they so desire.
-
-Package: r-base-core
-Architecture: any
-Depends: ${misc:Depends}, ${perl:Depends}, zip, unzip, libpaper-utils, xdg-utils, ${shlibs:Depends}, ucf (>= 3.0), ca-certificates
-Replaces: r-base (<= 1.4.1-1), r-recommended (<< 1.9.0), r-gnome (<= 2.3.1), r-cran-rcompgen (<= 0.1-17-1), r-base-latex (<= 2.9.2-4)
-Provides: r-gnome, r-cran-rcompgen, r-base-latex, r-api-3
-Conflicts: r-gnome, r-cran-rcompgen, r-base-latex
-Recommends: r-recommended, r-base-dev, r-doc-html
-Suggests: ess, r-doc-info | r-doc-pdf, r-mathlib, r-base-html
-Description: GNU R core of statistical computation and graphics system
- R is a system for statistical computation and graphics. It consists
- of a language plus a run-time environment with graphics, a debugger,
- access to certain system functions, and the ability to run programs
- stored in script files.
- .
- The design of R has been heavily influenced by two existing languages:
- Becker, Chambers & Wilks' S and Sussman's Scheme. Whereas the
- resulting language is very similar in appearance to S, the underlying
- implementation and semantics are derived from Scheme.
- .
- The core of R is an interpreted computer language which allows
- branching and looping as well as modular programming using functions.
- Most of the user-visible functions in R are written in R. It is
- possible for the user to interface to procedures written in the
- C, C++, or FORTRAN languages for efficiency, and many of R's core
- functions do so. The R distribution contains functionality for a
- large number of statistical procedures and underlying applied math
- computations. There is also a large set of functions which provide
- a flexible graphical environment for creating various kinds of data
- presentations.
- .
- Additionally, several thousand extension "packages" are available
- from CRAN, the Comprehensive R Archive Network, many also as Debian
- packages, named 'r-cran-<name>'.
- .
- This package provides the core GNU R system from which only the optional
- documentation packages r-base-html, r-doc-html, r-doc-pdf and r-doc-info
- have been split off to somewhat reduce the size of this package.
-
-Package: r-base-dev
-Architecture: all
-Depends: ${misc:Depends}, r-base-core (>= ${source:Version}), build-essential, gcc, g++, gfortran, libblas-dev | libatlas-base-dev, liblapack-dev | libatlas-base-dev, libncurses5-dev, libreadline-dev, libjpeg-dev, libpcre3-dev, libpng-dev, zlib1g-dev, libbz2-dev, liblzma-dev, cdbs
-Suggests: debhelper, texlive-base, texlive-latex-base, texlive-generic-recommended, texlive-fonts-recommended, texlive-fonts-extra, texlive-extra-utils, texlive-latex-recommended, texlive-latex-extra, texinfo
-Description: GNU R installation of auxiliary GNU R packages
- R is a system for statistical computation and graphics. It consists
- of a language plus a run-time environment with graphics, a debugger,
- access to certain system functions, and the ability to run programs
- stored in script files.
- .
- The design of R has been heavily influenced by two existing languages:
- Becker, Chambers & Wilks' S and Sussman's Scheme. Whereas the
- resulting language is very similar in appearance to S, the underlying
- implementation and semantics are derived from Scheme.
- .
- The core of R is an interpreted computer language which allows
- branching and looping as well as modular programming using functions.
- Most of the user-visible functions in R are written in R. It is
- possible for the user to interface to procedures written in the
- C, C++, or FORTRAN languages for efficiency, and many of R's core
- functions do so. The R distribution contains functionality for a
- large number of statistical procedures and underlying applied math
- computations. There is also a large set of functions which provide
- a flexible graphical environment for creating various kinds of data
- presentations.
- .
- Additionally, several thousand extension "packages" are available from
- CRAN, the Comprehensive R Archive Network, many also as Debian packages,
- named 'r-cran-<name>'.
- .
- This package ensures that other Debian packages needed for installation of
- some auxiliary R packages are installed.
-
-Package: r-mathlib
-Architecture: any
-Depends: ${misc:Depends}, ${shlibs:Depends}
-Recommends: r-base-core (= ${binary:Version}), r-base-dev (= ${binary:Version})
-Description: GNU R standalone mathematics library
- R is a system for statistical computation and graphics. It consists
- of a language plus a run-time environment with graphics, a debugger,
- access to certain system functions, and the ability to run programs
- stored in script files.
- .
- The design of R has been heavily influenced by two existing languages:
- Becker, Chambers & Wilks' S and Sussman's Scheme. Whereas the
- resulting language is very similar in appearance to S, the underlying
- implementation and semantics are derived from Scheme.
- .
- The core of R is an interpreted computer language which allows
- branching and looping as well as modular programming using functions.
- Most of the user-visible functions in R are written in R. It is
- possible for the user to interface to procedures written in the
- C, C++, or FORTRAN languages for efficiency, and many of R's core
- functions do so. The R distribution contains functionality for a
- large number of statistical procedures and underlying applied math
- computations. There is also a large set of functions which provide
- a flexible graphical environment for creating various kinds of data
- presentations.
- .
- Additionally, several thousand extension "packages" are available from
- CRAN, the Comprehensive R Archive Network, many also as Debian packages,
- named 'r-cran-<name>'.
- .
- This package provides the libRmath shared and static libraries which can
- be called from standalone C or C++ code.
-
-Package: r-base-html
-Architecture: all
-Priority: extra
-Section: doc
-Depends: ${misc:Depends}, r-base-core
-Replaces: r-base (<= 1.4.1-1), r-recommended (<< 1.9.0)
-Suggests: r-doc-html, mozilla | www-browser
-Description: GNU R html docs for statistical computing system functions
- R is a system for statistical computation and graphics. It consists
- of a language plus a run-time environment with graphics, a debugger,
- access to certain system functions, and the ability to run programs
- stored in script files.
- .
- The design of R has been heavily influenced by two existing languages:
- Becker, Chambers & Wilks' S and Sussman's Scheme. Whereas the
- resulting language is very similar in appearance to S, the underlying
- implementation and semantics are derived from Scheme.
- .
- The core of R is an interpreted computer language which allows
- branching and looping as well as modular programming using functions.
- Most of the user-visible functions in R are written in R. It is
- possible for the user to interface to procedures written in the
- C, C++, or FORTRAN languages for efficiency, and many of R's core
- functions do so. The R distribution contains functionality for a
- large number of statistical procedures and underlying applied math
- computations. There is also a large set of functions which provide
- a flexible graphical environment for creating various kinds of data
- presentations.
- .
- Additionally, several thousand extension "packages" are available from
- CRAN, the Comprehensive R Archive Network, many also as Debian packages,
- named 'r-cran-<name>'.
- .
- This package provides html documentation suitable for browsing with a
- web-browser for the libraries included in the r-base package. It is not
- a required package as the same documentation is already included for
- on-line browsing.
-
-Package: r-doc-pdf
-Architecture: all
-Section: doc
-Depends: ${misc:Depends}
-Suggests: r-base-core, xdg-utils | pdf-viewer
-Description: GNU R pdf manuals for statistical computing system
- R is a system for statistical computation and graphics. It consists
- of a language plus a run-time environment with graphics, a debugger,
- access to certain system functions, and the ability to run programs
- stored in script files.
- .
- The design of R has been heavily influenced by two existing languages:
- Becker, Chambers & Wilks' S and Sussman's Scheme. Whereas the
- resulting language is very similar in appearance to S, the underlying
- implementation and semantics are derived from Scheme.
- .
- The core of R is an interpreted computer language which allows
- branching and looping as well as modular programming using functions.
- Most of the user-visible functions in R are written in R. It is
- possible for the user to interface to procedures written in the
- C, C++, or FORTRAN languages for efficiency, and many of R's core
- functions do so. The R distribution contains functionality for a
- large number of statistical procedures and underlying applied math
- computations. There is also a large set of functions which provide
- a flexible graphical environment for creating various kinds of data
- presentations.
- .
- Additionally, several thousand extension "packages" are available from
- CRAN, the Comprehensive R Archive Network, many also as Debian packages,
- named 'r-cran-<name>'.
- .
- This package provides the R manuals in pdf format. The sibling packages
- r-doc-html and r-doc-info provides the same manuals.
-
-Package: r-doc-html
-Architecture: all
-Section: doc
-Depends: ${misc:Depends}
-Suggests: r-base-core, mozilla | www-browser
-Replaces: r-base (<= 1.4.1-1)
-Description: GNU R html manuals for statistical computing system
- R is a system for statistical computation and graphics. It consists
- of a language plus a run-time environment with graphics, a debugger,
- access to certain system functions, and the ability to run programs
- stored in script files.
- .
- The design of R has been heavily influenced by two existing languages:
- Becker, Chambers & Wilks' S and Sussman's Scheme. Whereas the
- resulting language is very similar in appearance to S, the underlying
- implementation and semantics are derived from Scheme.
- .
- The core of R is an interpreted computer language which allows
- branching and looping as well as modular programming using functions.
- Most of the user-visible functions in R are written in R. It is
- possible for the user to interface to procedures written in the
- C, C++, or FORTRAN languages for efficiency, and many of R's core
- functions do so. The R distribution contains functionality for a
- large number of statistical procedures and underlying applied math
- computations. There is also a large set of functions which provide
- a flexible graphical environment for creating various kinds of data
- presentations.
- .
- Additionally, several thousand extension "packages" are available from
- CRAN, the Comprehensive R Archive Network, many also as Debian packages,
- named 'r-cran-<name>'.
- .
- This package provides the R manuals in html format. The sibling packages
- r-doc-pdf and r-doc-info provides the same manuals.
-
-Package: r-doc-info
-Architecture: all
-Section: doc
-Depends: ${misc:Depends}, dpkg (>= 1.15.4) | install-info
-Replaces: r-base (<= 1.4.1-1)
-Suggests: r-base-core, info (>= 3.12) | info-browser
-Description: GNU R info manuals statistical computing system
- R is a system for statistical computation and graphics. It consists
- of a language plus a run-time environment with graphics, a debugger,
- access to certain system functions, and the ability to run programs
- stored in script files.
- .
- The design of R has been heavily influenced by two existing languages:
- Becker, Chambers & Wilks' S and Sussman's Scheme. Whereas the
- resulting language is very similar in appearance to S, the underlying
- implementation and semantics are derived from Scheme.
- .
- The core of R is an interpreted computer language which allows
- branching and looping as well as modular programming using functions.
- Most of the user-visible functions in R are written in R. It is
- possible for the user to interface to procedures written in the
- C, C++, or FORTRAN languages for efficiency, and many of R's core
- functions do so. The R distribution contains functionality for a
- large number of statistical procedures and underlying applied math
- computations. There is also a large set of functions which provide
- a flexible graphical environment for creating various kinds of data
- presentations.
- .
- Additionally, several thousand extension "packages" are available from
- CRAN, the Comprehensive R Archive Network, many also as Debian packages,
- named 'r-cran-<name>'.
- .
- This package provides the R manuals in info format. The sibling packages
- r-doc-html and r-doc-pdf provide the same manuals.
-
-Package: r-recommended
-Architecture: all
-Depends: ${misc:Depends}, r-base-core (>= ${binary:Version}), r-cran-boot (>= 1.2.19), r-cran-cluster (>= 1.9.6-2), r-cran-foreign (>= 0.7-2), r-cran-kernsmooth (>= 2.2.14), r-cran-lattice (>= 0.10.11), r-cran-mgcv (>= 1.1.5), r-cran-nlme (>= 3.1.52), r-cran-rpart (>= 3.1.20), r-cran-survival (>= 2.13.2-1), r-cran-mass, r-cran-class, r-cran-nnet, r-cran-spatial, r-cran-codetools, r-cran-matrix
-Description: GNU R collection of recommended packages [metapackage]
- R is a system for statistical computation and graphics. It consists
- of a language plus a run-time environment with graphics, a debugger,
- access to certain system functions, and the ability to run programs
- stored in script files.
- .
- The design of R has been heavily influenced by two existing languages:
- Becker, Chambers & Wilks' S and Sussman's Scheme. Whereas the
- resulting language is very similar in appearance to S, the underlying
- implementation and semantics are derived from Scheme.
- .
- The core of R is an interpreted computer language which allows
- branching and looping as well as modular programming using functions.
- Most of the user-visible functions in R are written in R. It is
- possible for the user to interface to procedures written in the
- C, C++, or FORTRAN languages for efficiency, and many of R's core
- functions do so. The R distribution contains functionality for a
- large number of statistical procedures and underlying applied math
- computations. There is also a large set of functions which provide
- a flexible graphical environment for creating various kinds of data
- presentations.
- .
- Additionally, several thousand extension "packages" are available from
- CRAN, the Comprehensive R Archive Network, many also as Debian packages,
- named 'r-cran-<name>'.
- .
- This Debian package is now a metapackage that depends on a set of
- packages that are recommended by the upstream R core team as part of a
- complete R distribution, and distributed along with the source of R
- itself, as well as directly via the CRAN network of mirrors. This set
- comprises the following packages (listed in their upstream names):
- - KernSmooth: Functions for kernel smoothing for Wand & Jones (1995)
- - Matrix: Classes and methods for dense and sparse matrices and
- operations on them using Lapack and SuiteSparse
- - MASS, class, nnet and spatial: packages from Venables and Ripley,
- `Modern Applied Statistics with S' (4th edition).
- - boot: Bootstrap R (S-Plus) Functions from the book "Bootstrap Methods
- and Their Applications" by A.C. Davison and D.V. Hinkley (1997).
- - cluster: Functions for clustering (by Rousseeuw et al.)
- - codetools: Code analysis tools for R
- - foreign: Read data stored by Minitab, S, SAS, SPSS, Stata, ...
- - lattice: Implementation of Trellis (R) graphics
- - mgcv: Multiple smoothing parameter estimation and GAMs by GCV
- - nlme: Linear and nonlinear mixed effects models
- - rpart: Recursive partitioning and regression trees
- - survival: Survival analysis, including penalised likelihood.
-
-
-Package: r-base-core-dbg
-Priority: extra
-Section: debug
-Architecture: any
-Depends: ${misc:Depends}, r-base-core (= ${binary:Version}), r-base-dev (= ${source:Version})
-Description: GNU R debug symbols for statistical comp. language and environment
- R is a system for statistical computation and graphics. It consists
- of a language plus a run-time environment with graphics, a debugger,
- access to certain system functions, and the ability to run programs
- stored in script files.
- .
- The design of R has been heavily influenced by two existing languages:
- Becker, Chambers & Wilks' S and Sussman's Scheme. Whereas the
- resulting language is very similar in appearance to S, the underlying
- implementation and semantics are derived from Scheme.
- .
- The core of R is an interpreted computer language which allows
- branching and looping as well as modular programming using functions.
- Most of the user-visible functions in R are written in R. It is
- possible for the user to interface to procedures written in the
- C, C++, or FORTRAN languages for efficiency, and many of R's core
- functions do so. The R distribution contains functionality for a
- large number of statistical procedures and underlying applied math
- computations. There is also a large set of functions which provide
- a flexible graphical environment for creating various kinds of data
- presentations.
- .
- Additionally, several thousand extension "packages" are available from
- CRAN, the Comprehensive R Archive Network, many also as Debian packages,
- named 'r-cran-<name>'.
- .
- This package contains debugging symbol tables for the binaries and dynamic
- libraries in the r-base-core package.
diff --git a/debian/copyright b/debian/copyright
deleted file mode 100644
index 51a35e9..0000000
--- a/debian/copyright
+++ /dev/null
@@ -1,660 +0,0 @@
-This is the Debian GNU/Linux r-base package of the GNU R system for
-statistical computing and graphics.
-
-R has a home page at `http://www.r-project.org/'. It is free software
-distributed under a GNU-style copyleft, and an official part of the GNU
-project ("GNU S").
-
-This package was initially debianized by Douglas Bates bates at stat.wisc.edu on
-Wed, 10 Dec 1997 14:17:31 -0600.
-
-Dirk Eddelbuettel <edd at debian.org> currently maintaines the package.
-
-Sources were downloaded from http://cran.r-project.org/src/ and changes,
-typically only to files in the debian/ directory are fully documented in the
-file /usr/share/doc/r-base/changelog.Debian.gz.
-
-R was initially written by Robert Gentleman and Ross Ihaka of the
-Statistics Department of the University of Auckland.
-Since mid-1997 there has been a core group with write access to the R
-source, currently consisting of
-Douglas Bates <bates at stat.wisc.edu>
-John Chambers <jmc at R-project.org>
-Peter Dalgaard <p.dalgaard at biostat.ku.dk>
-Seth Falcon <sfalcon at fhcrc.org>
-Robert Gentleman <rgentlem at fhcrc.org>
-Kurt Hornik <Kurt.Hornik at wu-wien.ac.at>
-Stefano Iacus <stefano.iacus at unimi.it>
-Ross Ihaka <ihaka at stat.auckland.ac.nz>
-Friedrich Leisch <Friedrich.Leisch at tuwien.ac.at>
-Thomas Lumley <tlumley at u.washington.edu>
-Martin Maechler <maechler at stat.math.ethz.ch>
-Duncan Murdoch <murdoch at stats.uwo.ca>
-Paul Murrell <paul at stat.auckland.ac.nz>
-Martyn Plummer <plummer at iarc.fr>
-Brian Ripley <ripley at stats.ox.ac.uk>
-Deepayan Sarkar <deepayan at stat.wisc.edu>
-Duncan Temple Lang <duncan at wald.ucdavis.edu>
-Luke Tierney <luke at stat.uiowa.edu>
-Simon Urbanek <urbanek at research.att.com>
-plus Heiner Schwarte <h.schwarte at bluewin.ch> up to October 1999
-and Guido Masarotto <guido at hal.stat.unipd.it> up to June 2003.
-
-Copyright (C) 1995, 1996 Robert Gentleman and Ross Ihaka
-Copyright (C) 1995 - 2008 The R Development Core Team
-Copyright (C) 1995 - 2008 The R Core Development Team
-Copyright (C) 2002 - 2008 The R Foundation
-
-As a rought breakdown between R Core members (and not excluding
-double-counting), we have for R 2.7.0 and the src/ directory
-
- 1276 files with Copyright (C) The R Development Core Team
- 338 files with Copyright (C) The R Core Development Team
- 287 files with Copyright (C) Ross Ihaka
- 215 files with Copyright (C) The R Foundation
- 201 files with Copyright (C) Robert Gentleman
- 33 files with Copyright (C) Brian D. Ripley
- 29 files with Copyright (C) Guido Masarotto
- 13 files with Copyright (C) Paul Murrell
- 5 files with Copyright (C) Martin Maechler
- 4 files with Copyright (C) Douglas M. Bates
- 1 file with Copyright (C) Friedrich Leisch
- 1 file with Copyright (C) Martyn Plummer
- 1 file with Copyright (C) Deepayan Sarkar
- 1 file with Copyright (C) Luke Tierney
-
-As for non-R Core members
-
- 4 files with Copyright (C) Adrian Trapletti
- 3 files with Copyright (C) Jose C. Pinheiro
- 2 files with Copyright (C) Berwin A. Turlach
-
-License: GPL-2
-Portions License: LGPL
-Portions License: Artistic
-
-R ships with the following file doc/COPYRIGHTS and refers to doc/COPYING, a
-copy of the GPL-2.
-
-========= begin doc/COPYRIGHTS ==============================================
-
-COPYRIGHT STATUS
-
-The bulk of this code is copyright by members of or all of the R
-Development Core Team.
-
-See the file COPYING for the exact conditions under which you may
-redistribute it.
-
-The status of files used only in the Windows port is in file
-src/gnuwin32/COPYRIGHTS.win, which is appended to this file in binary
-Windows distributions.
-
- ---------------------------------------------------
-
-The some of the public header files are distributed under the more
-permissive terms of the file COPYING.LIB. This applies only to the
-files
-
-src/include/R.h
-src/include/Rdefines.h
-src/include/Rgraphics.h
-src/include/Rinternals.h
-src/include/Rmath.h
-src/include/S.h
-src/include/R_ext/*.h
-
-From the announcement of the change (2001-Feb-05)
-
- It came to our attention that some projects are interpreting GPL to
- mean that compiling against the header files or linking against a
- Windows import library brings the compiled code under the scope of
- GPL. This would mean it would be impossible to distribute binary
- versions of non-GPL packages with compiled code which called entry
- points in the R executable or DLL, of which there are many on CRAN.
-
- We encourage packages to be distributed under Open Source conditions,
- but accept that this is not possible for some contributions. Our
- intention is that export files and import libraries be `accessors'
- under clause 5 of the LGPL, so that in most cases no (additional)
- restrictions are imposed by compiling a package using the LGPL-ed
- components of R.
-
- To avoid any anomalies, the versions of the same files in R versions
- 1.0.0 to 1.2.1 may also be used under LGPL or GPL.
-
-As from R 2.3.0 import libraries are no longer used under Windows, and
-as from R 2.4.0 fewer export files are used under AIX.
-
-
-Some contributed files are also covered by the Library General Public License.
-These include (see also below)
-
-src/library/stats/R/embed.R
-src/library/stats/src/PPsum.c
-
- ---------------------------------------------------
-
-
-
-
-Some of the code contains different copyright statements. It is used
-here in accordance with the copyright conditions in that code.
-
-src/library/grDevices/inst/afm/*___.afm
-
- Copyright (c) 1984 to 1992 Adobe Systems Incorporated.
-
-src/library/grDevices/inst/afm/MustRead.html
-src/library/grDevices/inst/afm/Courier*.afm
-src/library/grDevices/inst/afm/Helvetica*.afm
-src/library/grDevices/inst/afm/Times*.afm
-src/library/grDevices/inst/afm/Symbol.afm
-src/library/grDevices/inst/afm/ZapfDingbats.afm
-
- Copyright (c) 1985, 1987, 1989, 1990, 1993, 1997 Adobe Systems
- Incorporated. All Rights Reserved.
-
-src/library/grDevices/inst/afm/*l.afm
-
- Copyright 1999 by (URW)++ Design & Development
-
-src/library/grDevices/inst/afm/CM_*.afm
-src/library/grDevices/inst/afm/cm*.afm
-
- are derived from afms which are copyright by the American
- Mathematical Society, but `the AMS does require that the
- AMS copyright notice be removed from any derivative versions
- of the fonts which have been altered in any way'.
-
-doc/html/search/*.java
-
- Copyright (C), 1998 Thomas Baier
-or Copyright (C), 1998-2000, Thomas Baier, R Core Development Team
-
-doc/manual/R-intro.texi
-
- Copyright (C) 1990 W. N. Venables
- Copyright (C) 1992 W. N. Venables & D. M. Smith
- Copyright (C) 1997 R. Gentleman & R. Ihaka
- Copyright (C) 1997, 1998 M. Maechler
-
-share/texmf/upquote.sty
-
- Copyright 2000 Michael A. Covington.
- Copyright 2003 Michael A. Covington, Frank Mittelbach.
-
-src/library/graphics/R/mosaicplot.R
-
- Copyright (C) 1998 John W. Emerson
-
-src/library/graphics/R/pairs.R
-
- In part, Copyright 1999 Dr. Jens Oehlschlaegel-Akiyoshi
-
-src/library/graphics/R/polygon.R
-
- Copyright (C) 2001 by Kevin Buhr <buhr at stat.wisc.edu>
-
-src/library/stats/R/bandwidths.R
-src/library/stats/src//bandwidths.c
-src/appl/maxcol.c
-
- Copyright (C) various dates W. N. Venables and B. D. Ripley
-
-
-src/appl/interv.c : moved to API from code originally in
- src/library/stats/src/bvalue.f, see
- src/library/stats/COPYRIGHTS.modreg
-
-src/library/stats:
-
- See the files src/library/stats/COPYRIGHTS.modreg and
- src/library/stats/COPYRIGHTS.portsrc for further details
-
-
-src/library/stats/R/diffinv.R
-src/library/stats/R/embed.R
-src/library/stats/R/kernel.R
-src/library/stats/src/PPsum.c
-
- Copyright (C) 1997-1999 Adrian Trapletti
-
-
-src/library/stats/src/carray.c, mburg.c, myw.c, qr.c
-
- Copyright (C) 1999 Martyn Plummer
-
-
-src/library/stats/R/nls.R
-
- In part, Copyright 1999-1999 Saikat DebRoy
-
-
-src/library/stats/R/nlsFunc.R
-src/library/stats/R/selfStart.R
-src/library/stats/R/zzModels.R
-
- Copyright 1997,1999 Jose C. Pinheiro
-
-src/library/stats/src/Trunmed.c
-
- In part Copyright (C) 1995 Berwin A. Turlach
-
-src/library/tcltk/exec/*.tcl
-
- Copyright (c) various dates Jeffrey Hobbs
-
-
-src/modules/X11/rotated.[ch]
-
- Copyright (c) 1993 Alan Richardson
-
-
-src/appl/loglin.c
-src/library/stats/src/chisqsim.c
-src/library/stats/src/nscor.c
-src/library/stats/src/prho.c
-src/library/stats/src/swilk.c
-src/library/stats/src/kmns.f
-src/library/ts/src/starma.c
-src/nmath/pgamma.c
-src/nmath/pnbeta.c
-src/nmath/pnchisq.c
-src/nmath/pnt.c
-src/nmath/qbeta.c
-src/nmath/qgamma.c
-src/nmath/qnorm.c
-src/nmath/qtukey.c
-src/nmath/sunif.c
- are based in whole or in part on Applied Statistics algorithms
- (C) Royal Statistical Society
-
-src/nmath/stirlerr.c
-src/nmath/dbinom.c
-src/nmath/dpois.c
- are partly based on Clive Loader's (1999) work,
- (C) 1999-2000 Lucent Technologies, Bell Laboratories.
-
-
-src/main/RNG.c
-
- The Mersenne-Twister part is
- Copyright (C) 1997, 1999 Makoto Matsumoto and Takuji Nishimura.
-
-
-src/main/xspline.c
-
- * Copyright (c) 1985-1988 by Supoj Sutanthavibul
- * Parts Copyright (c) 1989-2002 by Brian V. Smith
- * Parts Copyright (c) 1991 by Paul King
- * Parts Copyright (c) 1992 by James Tough
- * Parts Copyright (c) 1998 by Georg Stemmer
- * Parts Copyright (c) 1995 by C. Blanc and C. Schlick
-
- * Any party obtaining a copy of these files is granted, free of charge, a
- * full and unrestricted irrevocable, world-wide, paid up, royalty-free,
- * nonexclusive right and license to deal in this software and
- * documentation files (the "Software"), including without limitation the
- * rights to use, copy, modify, merge, publish and/or distribute copies of
- * the Software, and to permit persons who receive copies from any such
- * party to do so, with the only requirement being that this copyright
- * notice remain intact.
-
-
-src/modules/lapack/dlapack[0123].f, cmplx.f, dlamc.f
-
- Extracted from
- * -- LAPACK routine (version 3.1) --
- * Univ. of Tennessee, Univ. of California Berkeley, NAG Ltd.,
- * Courant Institute, Argonne National Lab, and Rice University
-
- The README says
-
- It is freely-available software, and is copyrighted.
-
- although no actual copyright statement appears in the code.
-
-
-src/main/vsnprintf.c
-
- Taken from the wget 1.8.1 distribution: only used on platforms
- without vsnprintf.
- /*
- * Copyright Patrick Powell 1995
- * This code is based on code written by Patrick Powell (papowell at astart.com)
- * It may be used for any purpose as long as this notice remains intact
- * on all source code distributions
- */
-
-
-src/main/regex.c
- Copyright (C) 2002, 2003, 2004, 2005 Free Software Foundation, Inc.
-src/main/Rregex.h
- Copyright (C) 1985,1989-93,1995-98,2000,2001,2002,2003
- Free Software Foundation, Inc.
-
-
-src/extra/xdr/*
-
- Copyright (undated) Sun Microsystems, Inc.
-
- See the file src/extra/xdr/copyrght.txt
-
-
-src/extra/zlib/README, *.c, *.h
-
- Taken from zlib-1.2.3 (C) 1995-2005 Jean-loup Gailly and Mark Adler
- See src/extra/zlib/README for the licence.
-
-
-src/main/dounzip.c, unzip.h
-
- Contains code Copyright (C) 1998 Gilles Vollant from contrib/minizip
- in the zlib 1.1.3 distribution.
-
-
-src/main/acosh.c, asinh.c, atanh.c
-
-used as substitution code only. Based on
-
- Cephes Math Library Release 2.8: June, 2000
- Copyright 1984, 1995, 2000 by Stephen L. Moshier
-
-According to http://www.netlib.org/cephes/readme
-
- What you see here may be used freely but it comes with no support or
- guarantee.
-
-
-src/main/apse.c
-src/main/apse.h
-
- Copyright (C) Jarkko Hietaniemi, 1998,1999,2000,2001.
-
- This program is free software; you can redistribute it and/or modify
- it under the terms of either:
-
- a) the GNU Library General Public License as published by the Free
- Software Foundation; either version 2, or (at your option) any
- later version, or
-
- b) the "Artistic License" which comes with Perl source code.
-
-
-
-src/extra/pcre/LICENCE
-src/extra/pcre/*.[ch]
-
- Copyright (c) 1997-2008 University of Cambridge
- All rights reserved.
-
-See file src/extra/pcre/LICENCE. For binary builds of R that requires
-us to include
-
- Redistribution and use in source and binary forms, with or without
- modification, are permitted provided that the following conditions are met:
-
- * Redistributions of source code must retain the above copyright notice,
- this list of conditions and the following disclaimer.
-
- * Redistributions in binary form must reproduce the above copyright
- notice, this list of conditions and the following disclaimer in the
- documentation and/or other materials provided with the distribution.
-
- * Neither the name of the University of Cambridge nor the name of Google
- Inc. nor the names of their contributors may be used to endorse or
- promote products derived from this software without specific prior
- written permission.
-
- THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
- AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
- IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
- ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE
- LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
- CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF
- SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS
- INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN
- CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
- ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
- POSSIBILITY OF SUCH DAMAGE.
-
-
-src/extra/bzip2/LICENSE
-src/extra/bzip2/blocksort.c
-src/extra/bzip2/bzlib.c
-src/extra/bzip2/bzlib.h
-src/extra/bzip2/bzlib_private.h
-src/extra/bzip2/compress.c
-src/extra/bzip2/crctable.c
-src/extra/bzip2/decompress.c
-src/extra/bzip2/huffman.c
-src/extra/bzip2/randtable.c
-
- copyright (C) 1996-2007 Julian R Seward.
-
-
-src/library/tools/src/md5.[ch]
-
- Copyright (C) 1995, 1996, 2001 Free Software Foundation, Inc.
-
-
-src/extra/intl/*
-
-Based on gettextize from gettext 0.17
- Copyright (C) various dates Free Software Foundation, Inc.
- Distributed under the GNU Library General Public License
- version 2 or later.
-
-src/include/memcheck.h
-src/include/valgrind.h
-
-From valgrind,
-
- Copyright (C) 2000-2005 Julian Seward. All rights reserved.
-
-
-src/main/mkdtemp.c
-
-From glibc via
-http://lists.gnu.org/archive/html/bug-gnulib/2003-02/msg00019.html
-
- Copyright (C) 1999, 2001-2003 Free Software Foundation, Inc.
- Distributed under the GNU Library General Public License
- version 2 or later.
-
-src/main/Rstrptime.c
-
- Copyright (C) 1996, 1997, 1998, 1999, 2000 Free Software Foundation, Inc.
- Distributed under the GNU Library General Public License
- version 2 or later.
-
-share/perl/File/Copy/Recursive.pm
-
- Copyright 2004 by Daniel Muey
-
- This library is free software; you can redistribute it and/or modify
- it under the same terms as Perl itself.
-
-
-share/perl/Text/Delimiter.pm
-
- Copyright (C) Small Planet Software and Norman Walsh.
- All rights reserved. This program is free software; you can
- redistribute it and/or modify it under the same terms as Perl itself.
-
-po/*.po
-src/library/*/po/*.po
-
- Some of the translations are (C) the translator as marked in the files.
-
-COPYING
-doc/COPYING
-doc/COPYING.LIB
-m4/codeset.m4
-m4/gettext.m4
-m4/gettext-lib.m4
-share/licenses/GPL-2
-share/licenses/GPL-3
-share/licenses/LGPL-2
-share/licenses/LGPL-2.1
-share/licenses/LGPL-3
-src/main/strdup.c
-tools/config.quess
-tools/config.rpath
-tools/config.sub
-tools/help2man.pl
-tools/ltmain.sh
-tools/mdate-sh
-tools/missing
-
- Copyright various dates Free Software Foundation
-
-
-tools/install-sh:
-
- Copyright (C) 1994 X Consortium
-
-
-========= end doc/COPYRIGHTS ================================================
-
-
-The windows32 port includes the following file src/gnuwin32/COPYRIGHTS.win
-========= begin src/gnuwin32/COPYRIGHTS.win =================================
-
-Windows version
-===============
-
-src/gnuwin32/e_pow.S
-
-is distributed under the Lesser GNU Public Licence (file COPYING.LIB),
-being based closely on code in the GNU C Library.
-
-
-src/gnuwin32/getline/*
-
-/*
- * Copyright (C) 1991, 1992, 1993 by Chris Thewalt (thewalt at ce.berkeley.edu)
- *
- * Permission to use, copy, modify, and distribute this software
- * for any purpose and without fee is hereby granted, provided
- * that the above copyright notices appear in all copies and that both the
- * copyright notice and this permission notice appear in supporting
- * documentation. This software is provided "as is" without express or
- * implied warranty.
- *
- * Thanks to the following people who have provided enhancements and fixes:
- * Ron Ueberschaer, Christoph Keller, Scott Schwartz, Steven List,
- * DaviD W. Sanderson, Goran Bostrom, Michael Gleason, Glenn Kasten,
- * Edin Hodzic, Eric J Bivona, Kai Uwe Rommel, Danny Quah, Ulrich Betzler
- */
-
-
-
-src/extra/graphapp/*
-src/gnuwin32/front-ends/graphappmain.c
-
-The files {arith, array, bitmap, buttons, context, controls, cursors,
-drawing, drawtext, events, fonts, image, init, menus, objects,
-strings, windows}.c, {graphapp, internal}.h are in part
-
- Copyright (C) 1993-1998 Lachlan Patrick
- Distributed under the GNU Library General Public License
-
-
-src/gnuwin32/psignal.[ch]
-
-Based on files which are
- Freely redistributable and modifiable. Use at your own risk.
- Copyright 1994-1999 The Downhill Project
- http://www.ede.com/free/u2nt
-
-
-src/gnuwin32/front-ends/SC_*.h, bdx*.[ch], com_util.[ch], rproxy*.[ch]
-
- Copyright (C) 1999-2005 Thomas Baier
- Distributed under the GNU Library General Public License
- version 2 or later.
-
-
-
-R_HOME/Tcl:
-
-Files compiled and installed from Tcl 8.4.15 and Tk 8.4.15.
-see R_HOME/Tcl/license.terms for the license.
-
- This software is copyrighted by the Regents of the University of
- California, Sun Microsystems, Inc., and other parties. [...]
-
-
-src/extra/trio/* (except compat.c)
-
-From trio-1.12 (http://daniel.haxx.se/projects/trio/)
-
- Copyright (C) 1998-2001 by Bjorn Reese and Daniel Stenberg.
-
- Permission to use, copy, modify, and distribute this software for any
- purpose with or without fee is hereby granted, provided that the above
- copyright notice and this permission notice appear in all copies.
-
- THIS SOFTWARE IS PROVIDED ``AS IS'' AND WITHOUT ANY EXPRESS OR IMPLIED
- WARRANTIES, INCLUDING, WITHOUT LIMITATION, THE IMPLIED WARRANTIES OF
- MERCHANTIBILITY AND FITNESS FOR A PARTICULAR PURPOSE. THE AUTHORS AND
- CONTRIBUTORS ACCEPT NO RESPONSIBILITY IN ANY CONCEIVABLE MANNER.
-
-
-src/gnuwin32/dos_glob.[ch]
-
-Modified from perl's ext/File/Glob/bsd_glob.[ch].
-
-/*
- * Copyright (c) 1989, 1993
- * The Regents of the University of California. All rights reserved.
- *
- * This code is derived from software contributed to Berkeley by
- * Guido van Rossum.
- *
- * Redistribution and use in source and binary forms, with or without
- * modification, are permitted provided that the following conditions
- * are met:
- * 1. Redistributions of source code must retain the above copyright
- * notice, this list of conditions and the following disclaimer.
- * 2. Redistributions in binary form must reproduce the above copyright
- * notice, this list of conditions and the following disclaimer in the
- * documentation and/or other materials provided with the distribution.
- * 3. Neither the name of the University nor the names of its contributors
- * may be used to endorse or promote products derived from this software
- * without specific prior written permission.
- *
- * THIS SOFTWARE IS PROVIDED BY THE REGENTS AND CONTRIBUTORS ``AS IS'' AND
- * ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
- * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
- * ARE DISCLAIMED. IN NO EVENT SHALL THE REGENTS OR CONTRIBUTORS BE LIABLE
- * FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL
- * DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS
- * OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION)
- * HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
- * LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
- * OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF
- * SUCH DAMAGE.
- */
-
-src/fixed/h/iconv.h
-
-From GNU libiconv-1.11, distributed under LGPL>=2,
-Copyright (C) 1999-2003, 2005-2006 Free Software Foundation, Inc.
-========= end src/gnuwin32/COPYRIGHTS.win ===================================
-
-
-
-On a Debian GNU/Linux system, the GPL licenses (version 2 and 3) are
-included in the files
- /usr/share/common-licenses/GPL-2 and
- /usr/share/common-licenses/GPL-3.
-The LGPL licenses are included in the files
- /usr/share/common-licenses/LGPL-2,
- /usr/share/common-licenses/LGPL-2.1 and
- /usr/share/common-licenses/LGPL-3
-The Artistic license is in
- /usr/share/common-licenses/Artistic.
-
diff --git a/debian/icon-class-patch/R.desktop b/debian/icon-class-patch/R.desktop
deleted file mode 100644
index e044d3d..0000000
--- a/debian/icon-class-patch/R.desktop
+++ /dev/null
@@ -1,10 +0,0 @@
-[Desktop Entry]
-Version=1.0
-Type=Application
-Name=R
-Comment=R software environment for statistical computing and graphics
-Exec=R
-Icon=rlogo_icon
-Terminal=true
-StartupNotify=false
-Categories=Graphics;Science;Math;
diff --git a/debian/icon-class-patch/philip_johnson_email.txt b/debian/icon-class-patch/philip_johnson_email.txt
deleted file mode 100644
index 5cd5191..0000000
--- a/debian/icon-class-patch/philip_johnson_email.txt
+++ /dev/null
@@ -1,149 +0,0 @@
-From: Philip Johnson <plfjohnson at emory.edu>
-To: Dirk Eddelbuettel <edd at debian.org>
-Subject: Re: [Rd] x11 icon and class
-Date: Thu, 21 Jun 2012 17:30:50 -0500
-
-Hi Dirk,
-
-On 06/21/2012 06:53 AM, Dirk Eddelbuettel wrote:
-> Could I lean on you one last time to recap things today as R 2.15.1 will come
-> out tomorrow morning? That would be the time for the proper patch.
-
-I attach three files, just so you have everything in one email:
-1) the newer (second) version of the patch
-2) the icon (install to /usr/share/icons/hicolor/48x48/apps)
-3) the R.desktop file (install to /usr/share/applications)
-
-> So I successfully used your first patch (which needed no work whatsoever). I
-> think there was just one small addition, plus a .desktop file. I am a little
-> fuzzy about what to put in an R .desktop file as there is so much one could
-> list for eg mimetypes --- the one for GGobi is below.
-
-I would suggest a .desktop file for R similar to attached (also pasted
-below in the body of this email); if demand or a need arises later for
-more information, you can always add it in a later release. This
-includes all required items (Type, Name, Exec, etc.) plus some
-optional-but-nice (Terminal, StartupNotify, Categories, etc.).
-
-Crucially, for the .desktop file to work smoothly with Unity's
-application-matching framework, the WM_CLASS must match the executable
-name. So you'll need to apply the newer (second) version of the patch
--- or just replace the following line in src/modules/X11/devX11.c:
- chint->res_class = "R_x11";
-with
- chint->res_class = "R";
-
-Hope this helps,
-Philip
-
-[Desktop Entry]
-Version=1.0
-Type=Application
-Name=R
-Comment=R software environment for statistical computing and graphics
-Exec=R
-Icon=rlogo_icon
-Terminal=true
-StartupNotify=false
-Categories=Graphics;Science;Math
-
-----------------------------------------------------------------------
-diff -Naur R-devel/src/modules/X11/devX11.c R-devel-patched/src/modules/X11/devX11.c
---- R-devel/src/modules/X11/devX11.c 2012-05-28 20:53:33.000000000 -0400
-+++ R-devel-patched/src/modules/X11/devX11.c 2012-06-18 10:36:47.447245038 -0400
-@@ -70,6 +70,7 @@
- typedef int (*X11IOhandler)(Display *);
-
- #include "devX11.h"
-+#include "rlogo_icon.h" /* hard-coded ARGB icon */
-
- #include <Rmodules/RX11.h>
-
-@@ -1580,17 +1581,24 @@
-
- XStoreName(display, xd->window, xd->title);
-
--#ifndef USE_Xt
- /* For those too idle to make use of Xt (PR#14588) */
-+ /* Not sure reason for above comment -- even with Xt, WM_CLASS
-+ is not set on xd->window */
- XClassHint *chint;
- chint = XAllocClassHint();
- if (chint) {
-- chint->res_name = "r_x11";
-- chint->res_class = "R_x11";
-+ chint->res_name = "graphics";
-+ chint->res_class = "R";
- XSetClassHint(display, xd->window, chint);
- XFree(chint);
- }
--#endif
-+
-+ /* set window icon -- hardcoded into rlogo_icon.h */
-+ XChangeProperty(display, xd->window,
-+ XInternAtom(display, "_NET_WM_ICON", False),
-+ XInternAtom(display, "CARDINAL", False), 32,
-+ PropModeReplace,
-+ (const unsigned char*) rlogo_icon, 2 + 48*48);
-
- /* set up protocols so that window manager sends */
- /* me an event when user "destroys" window */
-diff -Naur R-devel/src/modules/X11/rlogo_icon.h R-devel-patched/src/modules/X11/rlogo_icon.h
---- R-devel/src/modules/X11/rlogo_icon.h 1969-12-31 19:00:00.000000000 -0500
-+++ R-devel-patched/src/modules/X11/rlogo_icon.h 2012-06-07 14:54:07.219041708 -0400
-@@ -0,0 +1,51 @@
-+unsigned long rlogo_icon[] = {
-+ 48,48,
-+ 0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,
-+ 0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,
-+ 0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,
-+ 0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,
-+ 0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,
-+ 0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,
-+ 0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x1868983,0x27e837a,0x6959595,0x2a888b85,0x5881857f,0x7d7f827b,0x9b7e827a,0xb17c8078,0xc07c7f78,0xc97c8179,0xca797e76,0xc3777c73,0xb4777b74,0x9d747971,0x8074786f,0x5b757870,0x2e797d75,0x77e847e,0x164685f,0x16b7168,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,
-+ 0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x38a8d88,0x68b8f89,0x288b8e89,0x71868983,0xba848881,0xf6838780,0xff838780,0xff838780,0xff848881,0xff848881,0xff848881,0xff848881,0xff858982,0xff81857e,0xff80847d,0xff7f837b,0xff7c8079,0xff787e76,0xff747a71,0xff71766d,0xf86f736b,0xbf6d7269,0x766c7169,0x2c70726c,0x7656a62,0x3666b63,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,
-+ 0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x58a8e87,0x1a8d918b,0x608a8f88,0xc9888c86,0xff878c85,0xff898d87,0xff8b8f89,0xff8c9089,0xfe8d918b,0xfe8f938d,0xff90948e,0xff91958e,0xff91968f,0xff91968f,0xff939891,0xff8f948d,0xff8f938c,0xff8d918b,0xff8a8f88,0xff878c85,0xfe858983,0xfe82867f,0xff7d8179,0xff777c73,0xff70756c,0xff6a6f66,0xcf676c63,0x65666c63,0x1d656a61,0x55f655b,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,
-+ 0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x290978c,0x208e918b,0x728c9089,0xe48a8f88,0xff8c918a,0xff90948d,0xff91958e,0xfe929690,0xff91958e,0xff8d918a,0xff8d9189,0xff8e938c,0xff92968f,0xff959992,0xff959a93,0xff959a93,0xff959a93,0xff949992,0xff939891,0xff939891,0xff929790,0xff91968f,0xff90948e,0xff8e938c,0xff8a8f88,0xff858a83,0xfe81857e,0xff7b8078,0xff737870,0xff696e65,0xe963685f,0x7a61675e,0x245f645b,0x3626660,0x0,0x0,0x0,0x0,0x0,0x0,0x0,
-+ 0x0,0x0,0x0,0x0,0x0,0x0,0x1091948f,0x5a8f928c,0xd68e918a,0xff90948d,0xff969a93,0xfe979a94,0xfe939790,0xff878c84,0xff7b7f77,0xff7a7f77,0xff858983,0xff92968f,0xff9b9f99,0xff9da19b,0xff999e97,0xff91958f,0xfe888c84,0xff7e827b,0xff767a73,0xff70756d,0xff6d726a,0xff6c7068,0xff6d7169,0xff6f746b,0xff72776f,0xff777c74,0xff7c8179,0xfe81867f,0xfe848881,0xfe82857f,0xfe7b8079,0xff72776f,0xff656a62,0xdd5e635a,0x605b6058,0x135b6057,0x0,0x0,0x0,0x0,0x0,0x0,
-+ 0x0,0x0,0x0,0x0,0x0,0x2792968f,0x9790938d,0xff91948f,0xff9a9e97,0xfe9da19b,0xfe959992,0xff7e837b,0xff6f746c,0xff7c8078,0xff949791,0xffa8aca6,0xffb4b7b2,0xffafb2ad,0xfe999d97,0xff81857e,0xff6e726b,0xff5d6259,0xff53584f,0xfc4b4f47,0xf2464b43,0xea454941,0xe4454941,0xe1444941,0xe0474c44,0xe34b5048,0xe84f544c,0xf052574e,0xfa555a51,0xff5a6057,0xff62685e,0xff6e736b,0xff7a7e77,0xfe7d827a,0xfe797e75,0xff6d7169,0xff5d625a,0xa0575c53,0x2d54594f,0x0,0x0,0x0,0x0,0x0,
-+ 0x0,0x0,0x0,0x0,0x3791958f,0xbf91958e,0xff969993,0xffa5a9a3,0xfea0a49e,0xff848881,0xff6a6f67,0xff7b8078,0xff9ea29b,0xffbabdb8,0xffc6c9c4,0xfeb5b8b3,0xfe949892,0xff737770,0xff535850,0xf93e423a,0xdc30342d,0xf150534e,0xde52544f,0xf8767874,0xdf7f817d,0xca888a86,0xbb8f918d,0xb4929591,0xb3949692,0xba929490,0xc68e918c,0xda8a8c88,0xec82847f,0xe871756e,0xeb686d65,0xeb5c6159,0xf2545950,0xff61665e,0xff72766e,0xff797e76,0xff71766e,0xff5e635b,0xc853584f,0x3f4e534b,0x0,0x0,0x0,0x0,
-+ 0x0,0x0,0x0,0x37949892,0xcf92968f,0xff999d96,0xfeafb2ad,0xfe9a9e97,0xff72776f,0xff6d7169,0xff979b95,0xffbfc2be,0xffd1d3d0,0xfec0c2be,0xfe979c95,0xff6c7069,0xff434740,0xdf252922,0xe14a4d48,0xf180817d,0xc0999b96,0xe6d7d7d5,0xc3fbfbfa,0xffffffff,0xffffffff,0xffffffff,0xffffffff,0xffffffff,0xffffffff,0xffffffff,0xffffffff,0xffffffff,0xf5ffffff,0xd5ffffff,0xdbe2e3e1,0xdebdbfbb,0xdf949892,0xe8787c76,0xe85b6057,0xfa5f645b,0xff72776f,0xfe737870,0xff60655c,0xd94f544b,0x3f4a4f47,0x0,0x0,0x0,
-+ 0x0,0x0,0x21959993,0xcb949791,0xff9a9e97,0xfeb8bbb6,0xff939690,0xff666b63,0xff787d75,0xffaeb1ac,0xffd5d7d4,0xffd4d6d3,0xfeaeb1ac,0xff797d76,0xff42463f,0xf331352e,0xeb61635f,0xd0969895,0xc5cbced2,0xf4eef1f7,0xffeef1f7,0xfceaedf2,0xffe7eaef,0xfae5e7ed,0xfae5e7ed,0xfae5e7ed,0xfae5e7ed,0xfae5e7ed,0xfae5e7ed,0xfae5e7ed,0xfae5e7ed,0xfae5e7ed,0xfbe5e7ed,0xfee6e9ee,0xfde9ecf1,0xf1f4f5f9,0xd4ffffff,0xd5f7f6f4,0xe8c4c5c1,0xe790938e,0xea62675f,0xfe696f66,0xff73776f,0xff5d625a,0xd4494e46,0x2949 [...]
-+ 0x0,0x4989e98,0xa7939791,0xff989c96,0xfebbbeb9,0xff979a94,0xff60655c,0xff7e827b,0xffbabdb9,0xffe0e2df,0xffd3d5d2,0xfea0a49e,0xff5f645d,0xf8272b24,0xdb3a3e38,0xe3a1a3a1,0xebf0f0f0,0xffffffff,0xd9bcc5d8,0xf4a0acc7,0xfaa0acc7,0xfaa1adc8,0xfaa1adc8,0xfaa1adc8,0xfaa1adc8,0xfaa1adc8,0xfaa1adc8,0xfaa1adc8,0xfaa1adc8,0xfaa1adc8,0xfaa1adc8,0xfaa1adc8,0xfaa1adc8,0xfaa1adc9,0xf99daac5,0xec94a0b9,0xe397a1b7,0xd8b3b8c7,0xcef1f2f7,0xe5fdfdfc,0xd1c4c7c3,0xd37d827a,0xfe6c7068,0xff72776f,0xff565b53, [...]
-+ 0x0,0x52959993,0xff969a93,0xffaeb2ad,0xfeabaea9,0xff5e625a,0xff7b7f78,0xffbabdb8,0xffe7e8e6,0xffd6d7d4,0xfe9ea19c,0xff525750,0xec1a1e17,0xce555753,0xd7d6d6d5,0xf7ffffff,0xffffffff,0xffffffff,0xcf929eb8,0xf79babcd,0xff7a86a2,0xff6a748d,0xff6a738c,0xff6a738c,0xff6a738c,0xff6a738c,0xff6a738c,0xff6a738c,0xff6a738c,0xff6a738c,0xff6a738c,0xff6a738c,0xff6a738c,0xff6a748d,0xff69758e,0xff6c7894,0xff7785a4,0xe96d7b9d,0xd76d7790,0xcfb6bac5,0xe5ffffff,0xebefefee,0xb2949791,0xf16d7269,0xff70756d [...]
-+ 0x1b0a7b6,0xd2949891,0xff9ca09a,0xfec5c7c3,0xff656961,0xff6e736a,0xffaaada8,0xffe9eae8,0xffe0e2e0,0xfea9ada7,0xff565a52,0xeb181c16,0xbf565955,0xd7ededed,0xfdffffff,0xffffffff,0xfefefefe,0xffffffff,0xd093a0b8,0xf6a7b6d9,0xff5b657b,0xff6d7a96,0xff707c9a,0xff707c9a,0xff6f7c99,0xff6c7997,0xff6c7997,0xff6d7a98,0xff6d7a98,0xff6d7a98,0xff6d7a97,0xff6d7a98,0xff6e7a98,0xff6e7b99,0xff6d7b98,0xfe6a7692,0xfe5f6a83,0xff606b83,0xff677490,0xee58637c,0xc9a5a9b4,0xf8fdfdfe,0xdffcfcfc,0xaea9ada7,0xf7 [...]
-+ 0x39959992,0xff949892,0xffadb0ab,0xff9b9e99,0xff5a5e56,0xff90938d,0xffd8d9d7,0xffefefee,0xffc1c3bf,0xff6e726b,0xf821241e,0xd5525451,0xd9eeefee,0xfcffffff,0xfffefefe,0xfefefefe,0xffffffff,0xffffffff,0xd093a0b9,0xf6a5b5d8,0xff545d73,0xff7f91b6,0xff8495bc,0xff8395bc,0xff8496bc,0xffabbada,0xffaab9dc,0xffa5b5d9,0xffa5b5d9,0xffa5b5d9,0xffa7b6da,0xffa5b4d8,0xff9babcf,0xff90a1c5,0xff8798be,0xff7e8fb5,0xff7786aa,0xfe6f7d9c,0xfe636f89,0xff5b6781,0xea454e63,0xe4d1d3d7,0xffffffff,0xe9ffffff,0xb [...]
-+ 0x8292968f,0xff969a94,0xfebdc0bc,0xff62675e,0xff70756d,0xffb0b3ad,0xfff1f1f0,0xffdfe1de,0xfe9ca09a,0xff393d36,0xea3b3d39,0xdecacac9,0xfdffffff,0xffffffff,0xfefefefe,0xffffffff,0xffffffff,0xffffffff,0xd093a0b9,0xf6a5b5d8,0xff555e75,0xff8192b8,0xff8597be,0xff8496be,0xfea4b4d6,0xff8e9cb9,0xff5e6880,0xff5d6880,0xff5d6880,0xff5d6880,0xff5d677f,0xff5c677f,0xff68748e,0xfe7b89a7,0xff8291b2,0xff8495ba,0xff8799c1,0xff8496bd,0xff7887a9,0xfe677490,0xff424c62,0xd3797d88,0xf4f2f2f3,0xffffffff,0xe [...]
-+ 0xb590948d,0xff969a93,0xffafb2ad,0xff53584f,0xff82867e,0xffcaccc8,0xfff4f5f4,0xffcbcdc9,0xff777b74,0xf320241d,0xe9787a76,0xfcffffff,0xffffffff,0xfefefefe,0xffffffff,0xffffffff,0xffffffff,0xffffffff,0xd093a0b9,0xf6a5b5d8,0xff555e75,0xff8092b8,0xff8597be,0xff8496bd,0xff95a4c4,0xfe474f64,0xf31b1e26,0xcb222632,0xcd222632,0xcd222632,0xcc212531,0xcd222633,0xe9343b4b,0xff515c74,0xfe6f7b99,0xfe7886a5,0xff8294b9,0xff8597bf,0xff8597bf,0xfe7a89a9,0xff545f78,0xd3303745,0xf4e2e3e4,0xffffffff,0xf [...]
-+ 0xcf8e928b,0xff949892,0xff9b9e98,0xff585d54,0xff8d928a,0xffd8d9d7,0xfff0f1f0,0xffbcbfba,0xff5b5f57,0xeb31342e,0xe0abacab,0xffffffff,0xfefefefe,0xffffffff,0xffffffff,0xffffffff,0xffffffff,0xffffffff,0xd093a0b9,0xf6a5b5d8,0xff555e75,0xff8092b8,0xff8597be,0xff8497be,0xff8895b4,0xfc3f475b,0xc7383a40,0xfcf7f7f7,0xf9efefef,0xf9efefef,0xf9efefef,0xfdf0f0f1,0xd3e0e1e4,0xaf6d778c,0xff717e9d,0xfe7783a0,0xff7080a1,0xff8699c0,0xff8597bf,0xff8596b9,0xff616d88,0xf2282e3b,0xfbdbdbdc,0xffffffff,0xf [...]
-+ 0xce8a8e88,0xff91958f,0xff8b8f89,0xff5b5f57,0xff90958e,0xffdbdddb,0xffedeeed,0xffb5b8b3,0xff4f544c,0xf74b4e49,0xf3cccdcd,0xffffffff,0xffffffff,0xffffffff,0xffffffff,0xffffffff,0xffffffff,0xffffffff,0xd093a0b9,0xf6a5b5d8,0xff555e75,0xff8092b8,0xff8597be,0xff8497be,0xff8795b3,0xfc40475c,0xc33d3e45,0xffffffff,0xffffffff,0xffffffff,0xffffffff,0xffffffff,0xfeffffff,0xe3cfd4dd,0xdc8091b3,0xff7a87a2,0xff6a7896,0xff8799c1,0xff8496be,0xff8e9ec2,0xfe67748f,0xff222734,0xffd7d7d9,0xfeffffff,0xf [...]
-+ 0xb4878b85,0xff8d918b,0xff8a8e87,0xff5b6057,0xff8d908a,0xffd5d7d5,0xffecedec,0xffb5b8b3,0xff535851,0xf74e524d,0xf2d0d1cf,0xffffffff,0xffffffff,0xffffffff,0xffffffff,0xffffffff,0xffffffff,0xffffffff,0xd093a0b9,0xf6a5b5d8,0xff555e75,0xff8092b8,0xff8597be,0xff8497be,0xff8795b3,0xfc40475c,0xc33d3e45,0xffffffff,0xffffffff,0xffffffff,0xffffffff,0xfefefefe,0xffffffff,0xe6d6dae4,0xd88f9fc4,0xff7e8aa4,0xff657290,0xff8799c1,0xff8396bd,0xff95a6c9,0xff646f89,0xf01a1e28,0xfbd8d8d9,0xffffffff,0xf [...]
-+ 0x83858982,0xff878c85,0xfe8a8e87,0xff5d625a,0xff82857f,0xffc4c6c3,0xffecedeb,0xffbdbfba,0xff6a6e67,0xe93e423c,0xdeb7b8b6,0xffffffff,0xfefefefe,0xffffffff,0xffffffff,0xffffffff,0xffffffff,0xffffffff,0xd093a0b9,0xf6a5b5d8,0xff555e75,0xff8092b8,0xff8597be,0xff8497be,0xff8795b3,0xfc40475c,0xc43d3f45,0xffffffff,0xfefefefe,0xfefefefe,0xfefefefe,0xfffefefe,0xf5fcfcfd,0xecc0c9dc,0xfd9daed1,0xff818ba1,0xff5f6c8a,0xff889ac2,0xff8899c0,0xfe9dacd0,0xff535c72,0xcb0f1119,0xf2dfdfdf,0xffffffff,0xf [...]
-+ 0x37848881,0xff80847d,0xff888c85,0xff6b7068,0xff737870,0xffaaada8,0xffe6e7e5,0xffcbceca,0xff898d86,0xef343931,0xe58e8f8c,0xffffffff,0xffffffff,0xfefefefe,0xffffffff,0xffffffff,0xffffffff,0xffffffff,0xd093a0b9,0xf6a5b5d8,0xff555e75,0xff8092b8,0xff8597be,0xff8597be,0xff808ead,0xfd495268,0xe54f5668,0xfebcc4d5,0xf9bac0d2,0xfab9c0d2,0xfbbac1d2,0xeeb5bdcf,0xd894a3c1,0xf899abcf,0xff99a5ba,0xfe636e81,0xff7686ab,0xff8597bf,0xfea5b6d8,0xff8c9ab8,0xff292e3c,0xc0525356,0xf0f0f0f0,0xffffffff,0xf [...]
-+ 0x0,0xd27c8078,0xff81857e,0xfe7c817a,0xff696e66,0xff8e928b,0xffcbcdca,0xffd9dad8,0xfea7aba5,0xff5a5f56,0xe65b5f58,0xdbdfdfde,0xffffffff,0xfffefefe,0xfefefefe,0xffffffff,0xffffffff,0xffffffff,0xd093a0b9,0xf6a5b5d8,0xff555e75,0xff8092b8,0xff8597be,0xff8597be,0xfe7786a5,0xff6c7893,0xff7d8cab,0xff808eb1,0xff8190b2,0xff8090b2,0xff8090b1,0xff8493b5,0xff9eaecd,0xffa0adc1,0xfe5d6573,0xff657390,0xff90a2c8,0xfeaabad8,0xffa5b4d0,0xff4a5265,0xe90c0d12,0xd4c5c4c5,0xf7ffffff,0xffffffff,0xf8ffffff [...]
-+ 0x0,0x51797d76,0xff787d75,0xff81857e,0xfe73776f,0xff787d75,0xffa3a5a0,0xffd4d6d3,0xffc1c4c0,0xff8e928b,0xf3464b42,0xcd7d807b,0xe0fcfdfc,0xffffffff,0xfffefefe,0xfefefefe,0xffffffff,0xffffffff,0xd093a0b9,0xf6a5b5d8,0xff555e75,0xff8092b8,0xff8597be,0xff8597be,0xff8294ba,0xff58647d,0xff596276,0xff5d657a,0xff5e677b,0xff5e677b,0xff5f677c,0xff5e667a,0xff4e5667,0xff525a6c,0xfe8f9db8,0xfeacbcdc,0xffacbad6,0xff8390aa,0xfe3a4153,0xfa16181c,0xad7e7e7f,0xe9fbfbfb,0xffffffff,0xffffffff,0xa1c4c6c2 [...]
-+ 0x0,0x0,0xae747870,0xff787c74,0xff7d817a,0xfe747871,0xff848880,0xffacafaa,0xffc9ccc7,0xfeb1b5af,0xff7f847d,0xe4484d45,0xd29c9f9b,0xeefcfcfc,0xfcffffff,0xffffffff,0xfefefefe,0xffffffff,0xd093a0b9,0xf6a5b5d8,0xff555e75,0xff8092b8,0xff8597be,0xff8496bd,0xff8597be,0xff92a3c9,0xff8b9bc0,0xff8797bb,0xff8697bb,0xff8394b8,0xff8090b5,0xff7c8eb3,0xff91a2c6,0xfea8b6d4,0xff707c95,0xff4b5469,0xfa353b4d,0xf01e212b,0xe3252527,0xcaa2a2a2,0xf5ffffff,0xffffffff,0xf2ffffff,0xeae4e6e4,0xf8828680,0xba28 [...]
-+ 0x0,0x0,0x1a73796f,0xd36f736b,0xff757a72,0xfe7b7e77,0xfe797d75,0xff898d86,0xffabaea9,0xffbbbeba,0xfea8aca6,0xff7e827b,0xec575c54,0xc6939791,0xdff0f0ef,0xfdffffff,0xffffffff,0xffffffff,0xcf93a0b9,0xf6a5b5d8,0xff555e75,0xff8092b8,0xff8597be,0xff8496bd,0xfe92a3c8,0xffabbad6,0xff97a5c3,0xff94a1bf,0xff93a1bf,0xff8f9dbd,0xfe8c9cbe,0xff8698bc,0xff8e9fc3,0xff68748d,0xfe242937,0xfa2b2e37,0xd23c3e43,0xb9868786,0xccf3f3f3,0xf8ffffff,0xffffffff,0xf0f9faf9,0xc6d6d7d4,0xee7e817b,0xd8333731,0x2327 [...]
-+ 0x0,0x0,0x0,0x326d7069,0xd66a6f67,0xff70756d,0xff787d75,0xfe7d817a,0xff8a8e87,0xffa3a6a1,0xffafb2ac,0xfea2a69f,0xff848881,0xef5c6158,0xd9858882,0xe5d2d3d1,0xedfafaf9,0xffffffff,0xd095a1ba,0xf6a5b5d8,0xff555e75,0xff8092b8,0xff8597be,0xff8496bd,0xffa3b3d3,0xfe66728b,0xfb2f3544,0xeb31384a,0xee333b4d,0xfc495369,0xff697693,0xfe7c8ba9,0xff7988a8,0xff626e88,0xfe616c86,0xef8490ab,0xcda5aec3,0xdbd5d8e1,0xf3fbfbfd,0xeaffffff,0xedededec,0xcbb7bab5,0xfd757972,0xde3a3d39,0x3d1f211e,0x0,0x0,0x0,
-+ 0x0,0x0,0x0,0x0,0x36696e66,0xc5656a62,0xff6a6f67,0xff737870,0xfe7c8079,0xff888b84,0xff999c96,0xffa2a6a0,0xfe9ca09a,0xff8b8f88,0xff6d7169,0xe76c7068,0xda9fa39d,0xe9dadad6,0xd18a97af,0xf7a5b5d8,0xff555e75,0xff8092b8,0xff8597be,0xff8496be,0xff8b9ab9,0xfd3b4255,0xdd212227,0xdd929397,0xdc8a8b90,0xdd747984,0xf95d6880,0xff6e7c9a,0xfe707d9a,0xfe697591,0xff6c7892,0xff6c7894,0xff687493,0xeb5d6985,0xd4969ba6,0xd4c2c4c1,0xda8c9089,0xff61655e,0xcd333731,0x401d1f1b,0x0,0x0,0x0,0x0,
-+ 0x0,0x0,0x0,0x0,0x0,0x26636960,0xa160665d,0xf6646960,0xff6a6f67,0xff767a72,0xfe81857d,0xff8e928b,0xff999c96,0xfe989c95,0xfe90948d,0xff81857d,0xfe6c7068,0xe8777a70,0xea727e92,0xfca5b5d7,0xff555e75,0xff8092b8,0xff8597be,0xff8497be,0xff8694b3,0xfc40475c,0xbe404249,0xffffffff,0xffffffff,0xdfffffff,0xd9a7adba,0xf462708e,0xff7b88a6,0xff687592,0xff687593,0xfe636e89,0xfe6b7791,0xff606c87,0xf94a5367,0xff5c6161,0xfb51544e,0xa9262924,0x2c171a15,0x0,0x0,0x0,0x0,0x0,
-+ 0x0,0x0,0x0,0x0,0x0,0x0,0xd63685f,0x695d6258,0xc95d6259,0xff60655d,0xff686d65,0xff737870,0xfe80837c,0xff8b8f88,0xff91958e,0xfe91968f,0xff8d918b,0xff84877d,0xff747f90,0xffa5b4d6,0xfe555e75,0xff8092b8,0xff8597be,0xff8497be,0xff8795b3,0xfd40475c,0xd0383a3f,0xd6dddedb,0xe8d8d9d7,0xb9cdceca,0xb5b0b3b3,0xe869748a,0xff717f9e,0xff7784a1,0xff7e8fb3,0xff8496bd,0xff7281a2,0xfe66738e,0xff515c74,0xff3d434f,0x7f252928,0xe121206,0x0,0x0,0x0,0x0,0x0,0x0,
-+ 0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x2d5b5f56,0x79585d54,0xcf585e55,0xff5a5f57,0xff61665e,0xff6b7068,0xff767b73,0xfe80847c,0xff878b84,0xff8c9087,0xff798497,0xffa5b4d6,0xff555e75,0xff8092b8,0xff8597be,0xff8497be,0xff8795b3,0xfe40485c,0xf33c3f41,0xdf92968f,0xed959993,0xcd848881,0xe08d918a,0xf983898f,0xff6d7a98,0xff7784a1,0xff717f9e,0xff8698c0,0xff8799c1,0xff7584a4,0xff626e89,0xff495267,0x68505869,0x3dae3fe,0x0,0x0,0x0,0x0,0x0,0x0,
-+ 0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x366685c,0x2d535850,0x65535850,0xae535850,0xf352584f,0xff555a51,0xff5b6058,0xff636860,0xff6c7066,0xff6e7a8c,0xfea5b4d6,0xff555e75,0xff8092b8,0xff8597be,0xff8497be,0xfe8795b3,0xff40485c,0xff3e4143,0xff898d85,0xff81857d,0xff7c8079,0xff72766e,0xff616662,0xff576071,0xff7380a0,0xfe7884a2,0xff7888ab,0xff8799c1,0xff8293b9,0xfe6d7a98,0xff56617a,0xe5495264,0x2f565b6a,0x0,0x0,0x0,0x0,0x0,0x0,
-+ 0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x1b4f544c,0x374c5149,0x664e524a,0xa04d5249,0xd54c5249,0xff4b4e44,0xff5f6a7c,0xffa4b3d5,0xfe555e75,0xff8092b8,0xff8597be,0xff8497be,0xfe8795b3,0xff40475b,0xff2a2d2e,0xff51554c,0xff484c44,0xff41453e,0xff3c4039,0xd5363b33,0xc1444c53,0xf26e7b99,0xff74819e,0xff7482a1,0xff8496bd,0xff8698c0,0xff7a8aac,0xff677490,0xff4b556b,0x9d4e5566,0xe555b67,0x0,0x0,0x0,0x0,0x0,
-+ 0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x35b5f58,0x14494e46,0x22464b43,0x2534351d,0xb86d7b97,0xfba6b5d7,0xff555e75,0xff8092b8,0xff8597be,0xff8497be,0xff8795b3,0xfe40475b,0xde23262a,0x833d4038,0x6d3a3d37,0x4d393d36,0x3032352e,0x2026291f,0x29585f68,0xa2697591,0xff717f9e,0xfe7684a1,0xff7686a8,0xff8699c0,0xff8597be,0xfe6f7d9b,0xff5f6b85,0xff474f63,0x4b575d6c,0x2c9cccc,0x0,0x0,0x0,0x0,
-+ 0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0xa17585a5,0xfaa7b6d9,0xff535c72,0xff7e90b6,0xff8295bc,0xff8294bc,0xff8593b2,0xfd40485c,0xb6292b32,0x28c8941,0x6434641,0x0,0x0,0x0,0x0,0x4d67728c,0xee6e7b97,0xff727f9c,0xfe7582a1,0xff8192b8,0xff8396be,0xff7e8fb3,0xfe687490,0xff4f5a72,0xd14a5264,0x14525869,0x0,0x0,0x0,0x0,
-+ 0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0xa17585a4,0xfaa7b6d9,0xff717d97,0xffa5b5d7,0xffabbadd,0xffabbadd,0xff9faecd,0xfd40475c,0xb22a2c33,0x0,0x0,0x0,0x0,0x0,0x0,0xe9099aa,0x9766728e,0xff727f9e,0xfe8492b0,0xff9aa8ca,0xffadbcdf,0xffacbbde,0xfe9eadcc,0xff7f8ca8,0xff4a5369,0x76545b69,0x6616670,0x0,0x0,0x0,
-+ 0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0xa37a8bac,0xfc72809c,0xff515b72,0xff515a71,0xff515b72,0xff515b72,0xff505a71,0xfe3a4255,0xb32a2c33,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x486c7690,0xe267738f,0xff56627b,0xff4c566b,0xff4e586e,0xff4e586e,0xff4e576d,0xff4d576c,0xff465065,0xf9434c5d,0x27616977,0x0,0x0,0x0,
-+ 0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x7e697289,0xcc393d48,0xd330333b,0xd330333b,0xd330333b,0xd330333b,0xd330333b,0xd931353e,0x983d4047,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x8ddebff,0x77525868,0xd4393d47,0xca2f323a,0xca30333b,0xca30333b,0xca30333b,0xca30333b,0xca30333b,0xd0343741,0x7a5a606c,0x6686e7b,0x0,0x0,
-+ 0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,
-+ 0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,
-+ 0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,
-+ 0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,
-+ 0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,
-+ 0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,
-+};
-
-----------------------------------------------------------------------
-PNG image [Press RETURN to save to a file]
-application/x-desktop [Press RETURN to save to a file]
diff --git a/debian/icon-class-patch/r_icon_class.patch b/debian/icon-class-patch/r_icon_class.patch
deleted file mode 100644
index 6fdeb80..0000000
--- a/debian/icon-class-patch/r_icon_class.patch
+++ /dev/null
@@ -1,95 +0,0 @@
-diff -Naur R-devel/src/modules/X11/devX11.c R-devel-patched/src/modules/X11/devX11.c
---- R-devel/src/modules/X11/devX11.c 2012-05-28 20:53:33.000000000 -0400
-+++ R-devel-patched/src/modules/X11/devX11.c 2012-06-18 10:36:47.447245038 -0400
-@@ -70,6 +70,7 @@
- typedef int (*X11IOhandler)(Display *);
-
- #include "devX11.h"
-+#include "rlogo_icon.h" /* hard-coded ARGB icon */
-
- #include <Rmodules/RX11.h>
-
-@@ -1580,17 +1581,24 @@
-
- XStoreName(display, xd->window, xd->title);
-
--#ifndef USE_Xt
- /* For those too idle to make use of Xt (PR#14588) */
-+ /* Not sure reason for above comment -- even with Xt, WM_CLASS
-+ is not set on xd->window */
- XClassHint *chint;
- chint = XAllocClassHint();
- if (chint) {
-- chint->res_name = "r_x11";
-- chint->res_class = "R_x11";
-+ chint->res_name = "graphics";
-+ chint->res_class = "R";
- XSetClassHint(display, xd->window, chint);
- XFree(chint);
- }
--#endif
-+
-+ /* set window icon -- hardcoded into rlogo_icon.h */
-+ XChangeProperty(display, xd->window,
-+ XInternAtom(display, "_NET_WM_ICON", False),
-+ XInternAtom(display, "CARDINAL", False), 32,
-+ PropModeReplace,
-+ (const unsigned char*) rlogo_icon, 2 + 48*48);
-
- /* set up protocols so that window manager sends */
- /* me an event when user "destroys" window */
-diff -Naur R-devel/src/modules/X11/rlogo_icon.h R-devel-patched/src/modules/X11/rlogo_icon.h
---- R-devel/src/modules/X11/rlogo_icon.h 1969-12-31 19:00:00.000000000 -0500
-+++ R-devel-patched/src/modules/X11/rlogo_icon.h 2012-06-07 14:54:07.219041708 -0400
-@@ -0,0 +1,51 @@
-+unsigned long rlogo_icon[] = {
-+ 48,48,
-+ 0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,
-+ 0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,
-+ 0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,
-+ 0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,
-+ 0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,
-+ 0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,
-+ 0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x1868983,0x27e837a,0x6959595,0x2a888b85,0x5881857f,0x7d7f827b,0x9b7e827a,0xb17c8078,0xc07c7f78,0xc97c8179,0xca797e76,0xc3777c73,0xb4777b74,0x9d747971,0x8074786f,0x5b757870,0x2e797d75,0x77e847e,0x164685f,0x16b7168,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,
-+ 0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x38a8d88,0x68b8f89,0x288b8e89,0x71868983,0xba848881,0xf6838780,0xff838780,0xff838780,0xff848881,0xff848881,0xff848881,0xff848881,0xff858982,0xff81857e,0xff80847d,0xff7f837b,0xff7c8079,0xff787e76,0xff747a71,0xff71766d,0xf86f736b,0xbf6d7269,0x766c7169,0x2c70726c,0x7656a62,0x3666b63,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,
-+ 0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x58a8e87,0x1a8d918b,0x608a8f88,0xc9888c86,0xff878c85,0xff898d87,0xff8b8f89,0xff8c9089,0xfe8d918b,0xfe8f938d,0xff90948e,0xff91958e,0xff91968f,0xff91968f,0xff939891,0xff8f948d,0xff8f938c,0xff8d918b,0xff8a8f88,0xff878c85,0xfe858983,0xfe82867f,0xff7d8179,0xff777c73,0xff70756c,0xff6a6f66,0xcf676c63,0x65666c63,0x1d656a61,0x55f655b,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,
-+ 0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x290978c,0x208e918b,0x728c9089,0xe48a8f88,0xff8c918a,0xff90948d,0xff91958e,0xfe929690,0xff91958e,0xff8d918a,0xff8d9189,0xff8e938c,0xff92968f,0xff959992,0xff959a93,0xff959a93,0xff959a93,0xff949992,0xff939891,0xff939891,0xff929790,0xff91968f,0xff90948e,0xff8e938c,0xff8a8f88,0xff858a83,0xfe81857e,0xff7b8078,0xff737870,0xff696e65,0xe963685f,0x7a61675e,0x245f645b,0x3626660,0x0,0x0,0x0,0x0,0x0,0x0,0x0,
-+ 0x0,0x0,0x0,0x0,0x0,0x0,0x1091948f,0x5a8f928c,0xd68e918a,0xff90948d,0xff969a93,0xfe979a94,0xfe939790,0xff878c84,0xff7b7f77,0xff7a7f77,0xff858983,0xff92968f,0xff9b9f99,0xff9da19b,0xff999e97,0xff91958f,0xfe888c84,0xff7e827b,0xff767a73,0xff70756d,0xff6d726a,0xff6c7068,0xff6d7169,0xff6f746b,0xff72776f,0xff777c74,0xff7c8179,0xfe81867f,0xfe848881,0xfe82857f,0xfe7b8079,0xff72776f,0xff656a62,0xdd5e635a,0x605b6058,0x135b6057,0x0,0x0,0x0,0x0,0x0,0x0,
-+ 0x0,0x0,0x0,0x0,0x0,0x2792968f,0x9790938d,0xff91948f,0xff9a9e97,0xfe9da19b,0xfe959992,0xff7e837b,0xff6f746c,0xff7c8078,0xff949791,0xffa8aca6,0xffb4b7b2,0xffafb2ad,0xfe999d97,0xff81857e,0xff6e726b,0xff5d6259,0xff53584f,0xfc4b4f47,0xf2464b43,0xea454941,0xe4454941,0xe1444941,0xe0474c44,0xe34b5048,0xe84f544c,0xf052574e,0xfa555a51,0xff5a6057,0xff62685e,0xff6e736b,0xff7a7e77,0xfe7d827a,0xfe797e75,0xff6d7169,0xff5d625a,0xa0575c53,0x2d54594f,0x0,0x0,0x0,0x0,0x0,
-+ 0x0,0x0,0x0,0x0,0x3791958f,0xbf91958e,0xff969993,0xffa5a9a3,0xfea0a49e,0xff848881,0xff6a6f67,0xff7b8078,0xff9ea29b,0xffbabdb8,0xffc6c9c4,0xfeb5b8b3,0xfe949892,0xff737770,0xff535850,0xf93e423a,0xdc30342d,0xf150534e,0xde52544f,0xf8767874,0xdf7f817d,0xca888a86,0xbb8f918d,0xb4929591,0xb3949692,0xba929490,0xc68e918c,0xda8a8c88,0xec82847f,0xe871756e,0xeb686d65,0xeb5c6159,0xf2545950,0xff61665e,0xff72766e,0xff797e76,0xff71766e,0xff5e635b,0xc853584f,0x3f4e534b,0x0,0x0,0x0,0x0,
-+ 0x0,0x0,0x0,0x37949892,0xcf92968f,0xff999d96,0xfeafb2ad,0xfe9a9e97,0xff72776f,0xff6d7169,0xff979b95,0xffbfc2be,0xffd1d3d0,0xfec0c2be,0xfe979c95,0xff6c7069,0xff434740,0xdf252922,0xe14a4d48,0xf180817d,0xc0999b96,0xe6d7d7d5,0xc3fbfbfa,0xffffffff,0xffffffff,0xffffffff,0xffffffff,0xffffffff,0xffffffff,0xffffffff,0xffffffff,0xffffffff,0xf5ffffff,0xd5ffffff,0xdbe2e3e1,0xdebdbfbb,0xdf949892,0xe8787c76,0xe85b6057,0xfa5f645b,0xff72776f,0xfe737870,0xff60655c,0xd94f544b,0x3f4a4f47,0x0,0x0,0x0,
-+ 0x0,0x0,0x21959993,0xcb949791,0xff9a9e97,0xfeb8bbb6,0xff939690,0xff666b63,0xff787d75,0xffaeb1ac,0xffd5d7d4,0xffd4d6d3,0xfeaeb1ac,0xff797d76,0xff42463f,0xf331352e,0xeb61635f,0xd0969895,0xc5cbced2,0xf4eef1f7,0xffeef1f7,0xfceaedf2,0xffe7eaef,0xfae5e7ed,0xfae5e7ed,0xfae5e7ed,0xfae5e7ed,0xfae5e7ed,0xfae5e7ed,0xfae5e7ed,0xfae5e7ed,0xfae5e7ed,0xfbe5e7ed,0xfee6e9ee,0xfde9ecf1,0xf1f4f5f9,0xd4ffffff,0xd5f7f6f4,0xe8c4c5c1,0xe790938e,0xea62675f,0xfe696f66,0xff73776f,0xff5d625a,0xd4494e46,0x2949 [...]
-+ 0x0,0x4989e98,0xa7939791,0xff989c96,0xfebbbeb9,0xff979a94,0xff60655c,0xff7e827b,0xffbabdb9,0xffe0e2df,0xffd3d5d2,0xfea0a49e,0xff5f645d,0xf8272b24,0xdb3a3e38,0xe3a1a3a1,0xebf0f0f0,0xffffffff,0xd9bcc5d8,0xf4a0acc7,0xfaa0acc7,0xfaa1adc8,0xfaa1adc8,0xfaa1adc8,0xfaa1adc8,0xfaa1adc8,0xfaa1adc8,0xfaa1adc8,0xfaa1adc8,0xfaa1adc8,0xfaa1adc8,0xfaa1adc8,0xfaa1adc8,0xfaa1adc9,0xf99daac5,0xec94a0b9,0xe397a1b7,0xd8b3b8c7,0xcef1f2f7,0xe5fdfdfc,0xd1c4c7c3,0xd37d827a,0xfe6c7068,0xff72776f,0xff565b53, [...]
-+ 0x0,0x52959993,0xff969a93,0xffaeb2ad,0xfeabaea9,0xff5e625a,0xff7b7f78,0xffbabdb8,0xffe7e8e6,0xffd6d7d4,0xfe9ea19c,0xff525750,0xec1a1e17,0xce555753,0xd7d6d6d5,0xf7ffffff,0xffffffff,0xffffffff,0xcf929eb8,0xf79babcd,0xff7a86a2,0xff6a748d,0xff6a738c,0xff6a738c,0xff6a738c,0xff6a738c,0xff6a738c,0xff6a738c,0xff6a738c,0xff6a738c,0xff6a738c,0xff6a738c,0xff6a738c,0xff6a748d,0xff69758e,0xff6c7894,0xff7785a4,0xe96d7b9d,0xd76d7790,0xcfb6bac5,0xe5ffffff,0xebefefee,0xb2949791,0xf16d7269,0xff70756d [...]
-+ 0x1b0a7b6,0xd2949891,0xff9ca09a,0xfec5c7c3,0xff656961,0xff6e736a,0xffaaada8,0xffe9eae8,0xffe0e2e0,0xfea9ada7,0xff565a52,0xeb181c16,0xbf565955,0xd7ededed,0xfdffffff,0xffffffff,0xfefefefe,0xffffffff,0xd093a0b8,0xf6a7b6d9,0xff5b657b,0xff6d7a96,0xff707c9a,0xff707c9a,0xff6f7c99,0xff6c7997,0xff6c7997,0xff6d7a98,0xff6d7a98,0xff6d7a98,0xff6d7a97,0xff6d7a98,0xff6e7a98,0xff6e7b99,0xff6d7b98,0xfe6a7692,0xfe5f6a83,0xff606b83,0xff677490,0xee58637c,0xc9a5a9b4,0xf8fdfdfe,0xdffcfcfc,0xaea9ada7,0xf7 [...]
-+ 0x39959992,0xff949892,0xffadb0ab,0xff9b9e99,0xff5a5e56,0xff90938d,0xffd8d9d7,0xffefefee,0xffc1c3bf,0xff6e726b,0xf821241e,0xd5525451,0xd9eeefee,0xfcffffff,0xfffefefe,0xfefefefe,0xffffffff,0xffffffff,0xd093a0b9,0xf6a5b5d8,0xff545d73,0xff7f91b6,0xff8495bc,0xff8395bc,0xff8496bc,0xffabbada,0xffaab9dc,0xffa5b5d9,0xffa5b5d9,0xffa5b5d9,0xffa7b6da,0xffa5b4d8,0xff9babcf,0xff90a1c5,0xff8798be,0xff7e8fb5,0xff7786aa,0xfe6f7d9c,0xfe636f89,0xff5b6781,0xea454e63,0xe4d1d3d7,0xffffffff,0xe9ffffff,0xb [...]
-+ 0x8292968f,0xff969a94,0xfebdc0bc,0xff62675e,0xff70756d,0xffb0b3ad,0xfff1f1f0,0xffdfe1de,0xfe9ca09a,0xff393d36,0xea3b3d39,0xdecacac9,0xfdffffff,0xffffffff,0xfefefefe,0xffffffff,0xffffffff,0xffffffff,0xd093a0b9,0xf6a5b5d8,0xff555e75,0xff8192b8,0xff8597be,0xff8496be,0xfea4b4d6,0xff8e9cb9,0xff5e6880,0xff5d6880,0xff5d6880,0xff5d6880,0xff5d677f,0xff5c677f,0xff68748e,0xfe7b89a7,0xff8291b2,0xff8495ba,0xff8799c1,0xff8496bd,0xff7887a9,0xfe677490,0xff424c62,0xd3797d88,0xf4f2f2f3,0xffffffff,0xe [...]
-+ 0xb590948d,0xff969a93,0xffafb2ad,0xff53584f,0xff82867e,0xffcaccc8,0xfff4f5f4,0xffcbcdc9,0xff777b74,0xf320241d,0xe9787a76,0xfcffffff,0xffffffff,0xfefefefe,0xffffffff,0xffffffff,0xffffffff,0xffffffff,0xd093a0b9,0xf6a5b5d8,0xff555e75,0xff8092b8,0xff8597be,0xff8496bd,0xff95a4c4,0xfe474f64,0xf31b1e26,0xcb222632,0xcd222632,0xcd222632,0xcc212531,0xcd222633,0xe9343b4b,0xff515c74,0xfe6f7b99,0xfe7886a5,0xff8294b9,0xff8597bf,0xff8597bf,0xfe7a89a9,0xff545f78,0xd3303745,0xf4e2e3e4,0xffffffff,0xf [...]
-+ 0xcf8e928b,0xff949892,0xff9b9e98,0xff585d54,0xff8d928a,0xffd8d9d7,0xfff0f1f0,0xffbcbfba,0xff5b5f57,0xeb31342e,0xe0abacab,0xffffffff,0xfefefefe,0xffffffff,0xffffffff,0xffffffff,0xffffffff,0xffffffff,0xd093a0b9,0xf6a5b5d8,0xff555e75,0xff8092b8,0xff8597be,0xff8497be,0xff8895b4,0xfc3f475b,0xc7383a40,0xfcf7f7f7,0xf9efefef,0xf9efefef,0xf9efefef,0xfdf0f0f1,0xd3e0e1e4,0xaf6d778c,0xff717e9d,0xfe7783a0,0xff7080a1,0xff8699c0,0xff8597bf,0xff8596b9,0xff616d88,0xf2282e3b,0xfbdbdbdc,0xffffffff,0xf [...]
-+ 0xce8a8e88,0xff91958f,0xff8b8f89,0xff5b5f57,0xff90958e,0xffdbdddb,0xffedeeed,0xffb5b8b3,0xff4f544c,0xf74b4e49,0xf3cccdcd,0xffffffff,0xffffffff,0xffffffff,0xffffffff,0xffffffff,0xffffffff,0xffffffff,0xd093a0b9,0xf6a5b5d8,0xff555e75,0xff8092b8,0xff8597be,0xff8497be,0xff8795b3,0xfc40475c,0xc33d3e45,0xffffffff,0xffffffff,0xffffffff,0xffffffff,0xffffffff,0xfeffffff,0xe3cfd4dd,0xdc8091b3,0xff7a87a2,0xff6a7896,0xff8799c1,0xff8496be,0xff8e9ec2,0xfe67748f,0xff222734,0xffd7d7d9,0xfeffffff,0xf [...]
-+ 0xb4878b85,0xff8d918b,0xff8a8e87,0xff5b6057,0xff8d908a,0xffd5d7d5,0xffecedec,0xffb5b8b3,0xff535851,0xf74e524d,0xf2d0d1cf,0xffffffff,0xffffffff,0xffffffff,0xffffffff,0xffffffff,0xffffffff,0xffffffff,0xd093a0b9,0xf6a5b5d8,0xff555e75,0xff8092b8,0xff8597be,0xff8497be,0xff8795b3,0xfc40475c,0xc33d3e45,0xffffffff,0xffffffff,0xffffffff,0xffffffff,0xfefefefe,0xffffffff,0xe6d6dae4,0xd88f9fc4,0xff7e8aa4,0xff657290,0xff8799c1,0xff8396bd,0xff95a6c9,0xff646f89,0xf01a1e28,0xfbd8d8d9,0xffffffff,0xf [...]
-+ 0x83858982,0xff878c85,0xfe8a8e87,0xff5d625a,0xff82857f,0xffc4c6c3,0xffecedeb,0xffbdbfba,0xff6a6e67,0xe93e423c,0xdeb7b8b6,0xffffffff,0xfefefefe,0xffffffff,0xffffffff,0xffffffff,0xffffffff,0xffffffff,0xd093a0b9,0xf6a5b5d8,0xff555e75,0xff8092b8,0xff8597be,0xff8497be,0xff8795b3,0xfc40475c,0xc43d3f45,0xffffffff,0xfefefefe,0xfefefefe,0xfefefefe,0xfffefefe,0xf5fcfcfd,0xecc0c9dc,0xfd9daed1,0xff818ba1,0xff5f6c8a,0xff889ac2,0xff8899c0,0xfe9dacd0,0xff535c72,0xcb0f1119,0xf2dfdfdf,0xffffffff,0xf [...]
-+ 0x37848881,0xff80847d,0xff888c85,0xff6b7068,0xff737870,0xffaaada8,0xffe6e7e5,0xffcbceca,0xff898d86,0xef343931,0xe58e8f8c,0xffffffff,0xffffffff,0xfefefefe,0xffffffff,0xffffffff,0xffffffff,0xffffffff,0xd093a0b9,0xf6a5b5d8,0xff555e75,0xff8092b8,0xff8597be,0xff8597be,0xff808ead,0xfd495268,0xe54f5668,0xfebcc4d5,0xf9bac0d2,0xfab9c0d2,0xfbbac1d2,0xeeb5bdcf,0xd894a3c1,0xf899abcf,0xff99a5ba,0xfe636e81,0xff7686ab,0xff8597bf,0xfea5b6d8,0xff8c9ab8,0xff292e3c,0xc0525356,0xf0f0f0f0,0xffffffff,0xf [...]
-+ 0x0,0xd27c8078,0xff81857e,0xfe7c817a,0xff696e66,0xff8e928b,0xffcbcdca,0xffd9dad8,0xfea7aba5,0xff5a5f56,0xe65b5f58,0xdbdfdfde,0xffffffff,0xfffefefe,0xfefefefe,0xffffffff,0xffffffff,0xffffffff,0xd093a0b9,0xf6a5b5d8,0xff555e75,0xff8092b8,0xff8597be,0xff8597be,0xfe7786a5,0xff6c7893,0xff7d8cab,0xff808eb1,0xff8190b2,0xff8090b2,0xff8090b1,0xff8493b5,0xff9eaecd,0xffa0adc1,0xfe5d6573,0xff657390,0xff90a2c8,0xfeaabad8,0xffa5b4d0,0xff4a5265,0xe90c0d12,0xd4c5c4c5,0xf7ffffff,0xffffffff,0xf8ffffff [...]
-+ 0x0,0x51797d76,0xff787d75,0xff81857e,0xfe73776f,0xff787d75,0xffa3a5a0,0xffd4d6d3,0xffc1c4c0,0xff8e928b,0xf3464b42,0xcd7d807b,0xe0fcfdfc,0xffffffff,0xfffefefe,0xfefefefe,0xffffffff,0xffffffff,0xd093a0b9,0xf6a5b5d8,0xff555e75,0xff8092b8,0xff8597be,0xff8597be,0xff8294ba,0xff58647d,0xff596276,0xff5d657a,0xff5e677b,0xff5e677b,0xff5f677c,0xff5e667a,0xff4e5667,0xff525a6c,0xfe8f9db8,0xfeacbcdc,0xffacbad6,0xff8390aa,0xfe3a4153,0xfa16181c,0xad7e7e7f,0xe9fbfbfb,0xffffffff,0xffffffff,0xa1c4c6c2 [...]
-+ 0x0,0x0,0xae747870,0xff787c74,0xff7d817a,0xfe747871,0xff848880,0xffacafaa,0xffc9ccc7,0xfeb1b5af,0xff7f847d,0xe4484d45,0xd29c9f9b,0xeefcfcfc,0xfcffffff,0xffffffff,0xfefefefe,0xffffffff,0xd093a0b9,0xf6a5b5d8,0xff555e75,0xff8092b8,0xff8597be,0xff8496bd,0xff8597be,0xff92a3c9,0xff8b9bc0,0xff8797bb,0xff8697bb,0xff8394b8,0xff8090b5,0xff7c8eb3,0xff91a2c6,0xfea8b6d4,0xff707c95,0xff4b5469,0xfa353b4d,0xf01e212b,0xe3252527,0xcaa2a2a2,0xf5ffffff,0xffffffff,0xf2ffffff,0xeae4e6e4,0xf8828680,0xba28 [...]
-+ 0x0,0x0,0x1a73796f,0xd36f736b,0xff757a72,0xfe7b7e77,0xfe797d75,0xff898d86,0xffabaea9,0xffbbbeba,0xfea8aca6,0xff7e827b,0xec575c54,0xc6939791,0xdff0f0ef,0xfdffffff,0xffffffff,0xffffffff,0xcf93a0b9,0xf6a5b5d8,0xff555e75,0xff8092b8,0xff8597be,0xff8496bd,0xfe92a3c8,0xffabbad6,0xff97a5c3,0xff94a1bf,0xff93a1bf,0xff8f9dbd,0xfe8c9cbe,0xff8698bc,0xff8e9fc3,0xff68748d,0xfe242937,0xfa2b2e37,0xd23c3e43,0xb9868786,0xccf3f3f3,0xf8ffffff,0xffffffff,0xf0f9faf9,0xc6d6d7d4,0xee7e817b,0xd8333731,0x2327 [...]
-+ 0x0,0x0,0x0,0x326d7069,0xd66a6f67,0xff70756d,0xff787d75,0xfe7d817a,0xff8a8e87,0xffa3a6a1,0xffafb2ac,0xfea2a69f,0xff848881,0xef5c6158,0xd9858882,0xe5d2d3d1,0xedfafaf9,0xffffffff,0xd095a1ba,0xf6a5b5d8,0xff555e75,0xff8092b8,0xff8597be,0xff8496bd,0xffa3b3d3,0xfe66728b,0xfb2f3544,0xeb31384a,0xee333b4d,0xfc495369,0xff697693,0xfe7c8ba9,0xff7988a8,0xff626e88,0xfe616c86,0xef8490ab,0xcda5aec3,0xdbd5d8e1,0xf3fbfbfd,0xeaffffff,0xedededec,0xcbb7bab5,0xfd757972,0xde3a3d39,0x3d1f211e,0x0,0x0,0x0,
-+ 0x0,0x0,0x0,0x0,0x36696e66,0xc5656a62,0xff6a6f67,0xff737870,0xfe7c8079,0xff888b84,0xff999c96,0xffa2a6a0,0xfe9ca09a,0xff8b8f88,0xff6d7169,0xe76c7068,0xda9fa39d,0xe9dadad6,0xd18a97af,0xf7a5b5d8,0xff555e75,0xff8092b8,0xff8597be,0xff8496be,0xff8b9ab9,0xfd3b4255,0xdd212227,0xdd929397,0xdc8a8b90,0xdd747984,0xf95d6880,0xff6e7c9a,0xfe707d9a,0xfe697591,0xff6c7892,0xff6c7894,0xff687493,0xeb5d6985,0xd4969ba6,0xd4c2c4c1,0xda8c9089,0xff61655e,0xcd333731,0x401d1f1b,0x0,0x0,0x0,0x0,
-+ 0x0,0x0,0x0,0x0,0x0,0x26636960,0xa160665d,0xf6646960,0xff6a6f67,0xff767a72,0xfe81857d,0xff8e928b,0xff999c96,0xfe989c95,0xfe90948d,0xff81857d,0xfe6c7068,0xe8777a70,0xea727e92,0xfca5b5d7,0xff555e75,0xff8092b8,0xff8597be,0xff8497be,0xff8694b3,0xfc40475c,0xbe404249,0xffffffff,0xffffffff,0xdfffffff,0xd9a7adba,0xf462708e,0xff7b88a6,0xff687592,0xff687593,0xfe636e89,0xfe6b7791,0xff606c87,0xf94a5367,0xff5c6161,0xfb51544e,0xa9262924,0x2c171a15,0x0,0x0,0x0,0x0,0x0,
-+ 0x0,0x0,0x0,0x0,0x0,0x0,0xd63685f,0x695d6258,0xc95d6259,0xff60655d,0xff686d65,0xff737870,0xfe80837c,0xff8b8f88,0xff91958e,0xfe91968f,0xff8d918b,0xff84877d,0xff747f90,0xffa5b4d6,0xfe555e75,0xff8092b8,0xff8597be,0xff8497be,0xff8795b3,0xfd40475c,0xd0383a3f,0xd6dddedb,0xe8d8d9d7,0xb9cdceca,0xb5b0b3b3,0xe869748a,0xff717f9e,0xff7784a1,0xff7e8fb3,0xff8496bd,0xff7281a2,0xfe66738e,0xff515c74,0xff3d434f,0x7f252928,0xe121206,0x0,0x0,0x0,0x0,0x0,0x0,
-+ 0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x2d5b5f56,0x79585d54,0xcf585e55,0xff5a5f57,0xff61665e,0xff6b7068,0xff767b73,0xfe80847c,0xff878b84,0xff8c9087,0xff798497,0xffa5b4d6,0xff555e75,0xff8092b8,0xff8597be,0xff8497be,0xff8795b3,0xfe40485c,0xf33c3f41,0xdf92968f,0xed959993,0xcd848881,0xe08d918a,0xf983898f,0xff6d7a98,0xff7784a1,0xff717f9e,0xff8698c0,0xff8799c1,0xff7584a4,0xff626e89,0xff495267,0x68505869,0x3dae3fe,0x0,0x0,0x0,0x0,0x0,0x0,
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diff --git a/debian/icon-class-patch/rlogo_icon.png.mpack b/debian/icon-class-patch/rlogo_icon.png.mpack
deleted file mode 100644
index 319e679..0000000
--- a/debian/icon-class-patch/rlogo_icon.png.mpack
+++ /dev/null
@@ -1,99 +0,0 @@
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-Mime-Version: 1.0
-Subject: logo
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-rUtlUz5oTbb5+a0jW1/a0RIIBJ9wXf4d27JvOBs92RSMVO1SFMV9FxMiANKy3IHYROyHqWT6
-m6Zpfj6XzS6dmoxdX1xUcrtjmy9zASgKZGpqAiDAFyiEx+uTxaWVsGz+NUXR1rUcPKhctg+8
-H55+6hkOIHZ+4BNfCJ4lUqQQHEIIcCEACZCUAJHUNU/3jeu99+3YDXX3K3vs6X16ujbhG99+
-8PfctT5H0CKMQTqWSYqqI1RYTlY+Kz2+EKWzqR//7MEnWqbP+9Aa+FOtCwDU1DdidmM95jbW
-Y25TPSqrqs4RIXK/8/094mLhpzF3ds0bZj7/LKAgFA6horQQ85rqsWjBfKz62FosWbYKIG2R
-wvC1v7/tbv0j0cCl0HSP0tb6ljJ4qheD/T0X4qeUErZj0Z/6En73N25K3fG9n2/OZpLXDw/1
-V+cyU1AUNt31kISEy10kkub9gWBwM4CTHzmBRLS/93DbnsP5XNr4oyiqML2ouHjkT63/1nfv
-2vvdOzdsjI4M3JLLpnPvVpmoqq5bxaG/uv2b//Tgpl/8yL7yh/AKruAK/vz4X/Kov7B8LyQX
-AAAAAElFTkSuQmCC
-
------
diff --git a/debian/javareconf.patch b/debian/javareconf.patch
deleted file mode 100644
index 14a02d2..0000000
--- a/debian/javareconf.patch
+++ /dev/null
@@ -1,18 +0,0 @@
---- javareconf.orig 2008-08-25 06:26:13.000000000 -0500
-+++ javareconf 2008-08-25 06:30:49.000000000 -0500
-@@ -292,9 +295,13 @@
-
- test "${dry_run}" = yes && exit 0
-
--echo "Updating Java configuration in ${R_HOME}"
-+## edd 28 Sep 2006 Debian's R config is in /etc/R, so overrride where R_HOME was used
-
--files="${R_HOME}/etc${R_ARCH}/Makeconf ${R_HOME}/etc${R_ARCH}/ldpaths"
-+#echo "Updating Java configuration in ${R_HOME}"
-+echo "Updating Java configuration in /etc/R"
-+
-+#files="${R_HOME}/etc${R_ARCH}/Makeconf ${R_HOME}/etc${R_ARCH}/ldpaths"
-+files="/etc/R/Makeconf /etc/R/ldpaths"
- for file in $files; do
- ${SED-sed} -e "s|JAVA =.\{0,\}|JAVA = $JAVA|" -e "s|JAVA_HOME =.\{0,\}|JAVA_HOME = ${JAVA_HOME}|" -e "s|: \${JAVA_HOME=.\{1,\}|: \${JAVA_HOME=${JAVA_HOME}}|" -e "s|: \${R_JAVA_LD_LIBRARY_PATH=.\{1,\}|: \${R_JAVA_LD_LIBRARY_PATH=${JAVA_LD_LIBRARY_PATH_SH}}|" -e "s|JAVA_LIBS =.\{0,\}|JAVA_LIBS = ${JAVA_LIBS}|g" -e "s|JAVA_LD_LIBRARY_PATH =.\{0,\}|JAVA_LD_LIBRARY_PATH = ${JAVA_LD_LIBRARY_PATH}|" -e "s|JAVAC =.\{0,\}|JAVAC = $JAVAC|" -e "s|JAVAH =.\{0,\}|JAVAH = $JAVAH|" -e "s|JAR =.\{0 [...]
- if test -f "${file}.new"; then
diff --git a/debian/libR.conf b/debian/libR.conf
deleted file mode 100644
index 91b69b2..0000000
--- a/debian/libR.conf
+++ /dev/null
@@ -1,2 +0,0 @@
-# make libR.so and libRlapack.so visible to ld.so
-/usr/lib/R/lib
diff --git a/debian/override-bz2-version-check.patch b/debian/override-bz2-version-check.patch
deleted file mode 100644
index a3322b6..0000000
--- a/debian/override-bz2-version-check.patch
+++ /dev/null
@@ -1,22 +0,0 @@
---- r-base-2.13.1.orig/configure
-+++ r-base-2.13.1/configure
-@@ -32899,7 +32899,7 @@
- #endif
- int main() {
- char *ver = BZ2_bzlibVersion();
-- exit(strcmp(ver, "1.0.6") < 0);
-+ exit(0); /* edd: override, Debian's 1.0.5 is patched strcmp(ver, "1.0.6") < 0); */
- }
-
- _ACEOF
---- r-base-2.13.1.orig/m4/R.m4
-+++ r-base-2.13.1/m4/R.m4
-@@ -3049,7 +3049,7 @@
- #endif
- int main() {
- char *ver = BZ2_bzlibVersion();
-- exit(strcmp(ver, "1.0.6") < 0);
-+ exit(0); /* edd: override, Debian's 1.0.5 is patched strcmp(ver, "1.0.6") < 0); */
- }
- ]])], [r_cv_have_bzlib=yes], [r_cv_have_bzlib=no], [r_cv_have_bzlib=no])
- LIBS="${r_save_LIBS}"
diff --git a/debian/papersize.sh b/debian/papersize.sh
deleted file mode 100644
index dbcf45f..0000000
--- a/debian/papersize.sh
+++ /dev/null
@@ -1,19 +0,0 @@
-#!/bin/bash
-
-cp /etc/R/Renviron /tmp/
-Sysfile=/etc/papersize
-Rfile=/tmp/Renviron
-
-syspaper=`cat $Sysfile`
-echo "Papersize in /etc is $syspaper"
-
-rpaper=`grep ^R_PAPERSIZE $Rfile | cut -d"'" -f2`
-echo "Papersize in Renviron is $rpaper"
-
-if [ "$syspaper" != "$rpaper" ]; then
- echo "Need to replace $rpaper with $syspaper"
-
- perl -p -i -e "s|\'$rpaper\'|\'$syspaper\'|" "$Rfile"
-fi
-
-grep PAPERSIZE $Rfile
diff --git a/debian/r-base-core-dbg.dirs b/debian/r-base-core-dbg.dirs
deleted file mode 100644
index 1da8fba..0000000
--- a/debian/r-base-core-dbg.dirs
+++ /dev/null
@@ -1 +0,0 @@
-usr/share/lintian/overrides
diff --git a/debian/r-base-core-dbg.lintian b/debian/r-base-core-dbg.lintian
deleted file mode 100644
index f140f8d..0000000
--- a/debian/r-base-core-dbg.lintian
+++ /dev/null
@@ -1,2 +0,0 @@
-r-base-core-dbg: file-missing-in-md5sums usr/lib/debug/usr/bin/Rscript
-r-base-core-dbg: file-missing-in-md5sums usr/lib/debug/usr/lib/R/bin/Rscript
diff --git a/debian/r-base-core.bash-completion b/debian/r-base-core.bash-completion
deleted file mode 100644
index 5c3bdbe..0000000
--- a/debian/r-base-core.bash-completion
+++ /dev/null
@@ -1 +0,0 @@
-debian/R.bash-completion R
diff --git a/debian/r-base-core.dirs b/debian/r-base-core.dirs
deleted file mode 100644
index 614c1fe..0000000
--- a/debian/r-base-core.dirs
+++ /dev/null
@@ -1,12 +0,0 @@
-etc/R
-etc/ld.so.conf.d
-usr/share/bash-completion/completions
-usr/bin
-usr/lib/R
-usr/lib/R/site-library
-usr/share/doc/r-base-core
-usr/share/lintian/overrides
-usr/share/R/include/
-usr/share/texmf/tex/latex
-usr/share/icons/hicolor/48x48/apps
-usr/share/applications
diff --git a/debian/r-base-core.files b/debian/r-base-core.files
deleted file mode 100644
index b412ff1..0000000
--- a/debian/r-base-core.files
+++ /dev/null
@@ -1,3 +0,0 @@
-usr/bin
-usr/lib/R/
-usr/share
diff --git a/debian/r-base-core.lintian b/debian/r-base-core.lintian
deleted file mode 100644
index 3c06e42..0000000
--- a/debian/r-base-core.lintian
+++ /dev/null
@@ -1,109 +0,0 @@
-r-base-core: shlib-with-non-pic-code usr/lib/R/modules/internet.so
-r-base-core: shlib-with-non-pic-code usr/lib/R/modules/lapack.so
-r-base-core: shlib-with-non-pic-code usr/lib/R/modules/vfonts.so
-r-base-core: shlib-with-non-pic-code usr/lib/R/library/modreg/libs/modreg.so
-r-base-core: file-missing-in-md5sums usr/lib/R/library/base/html/function.html
-r-base-core: file-missing-in-md5sums usr/lib/R/library/base/html/is.function.html
-r-base-core: file-missing-in-md5sums usr/lib/R/library/base/html/remove.packages.html
-r-base-core: file-missing-in-md5sums usr/lib/R/doc/html/function.html
-r-base-core: file-missing-in-md5sums usr/share/R/doc/html/packages.html
-r-base-core: file-missing-in-md5sums usr/share/R/doc/html/search/index.txt
-r-base-core: file-missing-in-md5sums usr/lib/R/library/base/html/as.function.html
-r-base-core: file-missing-in-md5sums usr/bin/R
-r-base-core: file-missing-in-md5sums usr/lib/R/library/base/html/update.packages.html
-r-base-core: file-missing-in-md5sums usr/lib/R/library/base/help/make.packages.html
-r-base-core: file-missing-in-md5sums usr/lib/R/library/utils/help/make.packages.html
-r-base-core: file-missing-in-md5sums usr/bin/Rscript
-r-base-core: file-missing-in-md5sums usr/lib/R/library/utils/R-ex/make.packages.html.R
-r-base-core: file-missing-in-md5sums usr/lib/R/bin/Rscript
-r-base-core: file-missing-in-md5sums usr/lib/R/etc/Renviron.ucf
-r-base-core: extra-license-file usr/lib/R/library/base/help/license
-r-base-core: image-file-in-usr-lib usr/lib/R/doc/html/left.jpg
-r-base-core: image-file-in-usr-lib usr/lib/R/doc/html/logo.jpg
-r-base-core: image-file-in-usr-lib usr/lib/R/doc/html/logosm.jpg
-r-base-core: image-file-in-usr-lib usr/lib/R/doc/html/right.jpg
-r-base-core: image-file-in-usr-lib usr/lib/R/doc/html/up.jpg
-r-base-core: script-not-executable usr/lib/R/share/perl/build-help.pl
-r-base-core: lengthy-symlink usr/share/R/doc/COPYING ../../../share/common-licenses/GPL
-r-base-core: lengthy-symlink usr/share/R/doc/COPYING.LIB ../../../share/common-licenses/LGPL
-r-base-core: script-not-executable ./usr/lib/R/share/perl/build-help.pl
-r-base-core: menu-item-creates-new-root-section Applications /usr/share/menu/r-base-core:5
-r-base-core: pkg-has-shlibs-control-file-but-no-actual-shared-libs
-r-base-core: extra-license-file usr/share/R/share/licenses/license.db
-r-base-core: package-contains-empty-directory usr/lib/R/library/graphics/html/
-r-base-core: package-contains-empty-directory usr/lib/R/library/base/html/
-r-base-core: package-contains-empty-directory usr/lib/R/library/tools/html/
-r-base-core: package-contains-empty-directory usr/lib/R/library/methods/latex/
-r-base-core: package-contains-empty-directory usr/lib/R/library/splines/latex/
-r-base-core: package-contains-empty-directory usr/lib/R/library/tcltk/html/
-r-base-core: package-contains-empty-directory usr/share/info/
-r-base-core: package-contains-empty-directory usr/share/R/doc/manual/
-r-base-core: package-contains-empty-directory usr/lib/R/library/grid/latex/
-r-base-core: package-contains-empty-directory usr/lib/R/site-library/
-r-base-core: package-contains-empty-directory usr/lib/R/library/graphics/latex/
-r-base-core: package-contains-empty-directory usr/lib/R/library/stats/latex/
-r-base-core: package-contains-empty-directory usr/lib/R/library/stats4/latex/
-r-base-core: package-contains-empty-directory usr/lib/R/library/stats/html/
-r-base-core: package-contains-empty-directory usr/lib/R/library/grDevices/html/
-r-base-core: package-contains-empty-directory usr/lib/R/library/utils/latex/
-r-base-core: package-contains-empty-directory usr/lib/R/library/datasets/html/
-r-base-core: package-contains-empty-directory usr/lib/R/library/datasets/latex/
-r-base-core: package-contains-empty-directory usr/lib/R/library/grDevices/latex/
-r-base-core: package-contains-empty-directory usr/lib/R/library/tcltk/latex/
-r-base-core: package-contains-empty-directory usr/lib/R/library/methods/html/
-r-base-core: package-contains-empty-directory usr/lib/R/library/splines/html/
-r-base-core: package-contains-empty-directory usr/lib/R/library/base/latex/
-r-base-core: package-contains-empty-directory usr/lib/R/library/stats4/html/
-r-base-core: package-contains-empty-directory usr/lib/R/library/grid/html/
-r-base-core: package-contains-empty-directory usr/lib/R/library/tools/latex/
-r-base-core: package-contains-empty-directory usr/lib/R/library/utils/html/
-r-base-core: executable-not-elf-or-script usr/share/R/share/sh/help-print.sh
-r-base-core: executable-not-elf-or-script usr/lib/R/bin/REMOVE
-r-base-core: executable-not-elf-or-script usr/lib/R/bin/Sweave
-r-base-core: executable-not-elf-or-script usr/lib/R/bin/config
-r-base-core: executable-not-elf-or-script usr/lib/R/bin/SHLIB
-r-base-core: executable-not-elf-or-script usr/lib/R/bin/LINK
-r-base-core: executable-not-elf-or-script usr/lib/R/bin/javareconf.orig
-r-base-core: executable-not-elf-or-script usr/lib/R/bin/INSTALL
-r-base-core: executable-not-elf-or-script usr/lib/R/bin/rtags
-r-base-core: executable-not-elf-or-script usr/lib/R/bin/BATCH
-r-base-core: executable-not-elf-or-script usr/lib/R/bin/Stangle
-r-base-core: executable-not-elf-or-script usr/lib/R/bin/Rd2dvi
-r-base-core: executable-not-elf-or-script usr/lib/R/bin/COMPILE
-r-base-core: executable-not-elf-or-script usr/lib/R/bin/javareconf
-r-base-core: executable-not-elf-or-script usr/lib/R/bin/Rd2txt
-r-base-core: executable-not-elf-or-script usr/lib/R/bin/Rdconv
-r-base-core: executable-not-elf-or-script usr/lib/R/bin/build
-r-base-core: executable-not-elf-or-script usr/lib/R/bin/Rprof
-r-base-core: executable-not-elf-or-script usr/lib/R/bin/check
-r-base-core: executable-not-elf-or-script usr/lib/R/bin/Rdiff
-r-base-core: image-file-in-usr-lib usr/lib/R/library/graphics/help/figures/mai.png
-r-base-core: image-file-in-usr-lib usr/lib/R/library/graphics/help/figures/oma.png
-r-base-core: image-file-in-usr-lib usr/lib/R/library/graphics/help/figures/pch.png
-r-base-core: executable-not-elf-or-script usr/lib/R/bin/Rd2pdf
-r-base-core: hardening-no-relro usr/bin/Rscript
-r-base-core: hardening-no-relro usr/lib/R/bin/Rscript
-r-base-core: hardening-no-relro usr/lib/R/bin/exec/R
-r-base-core: hardening-no-relro usr/lib/R/lib/libR.so
-r-base-core: hardening-no-relro usr/lib/R/library/grDevices/libs/cairo.so
-r-base-core: hardening-no-relro usr/lib/R/library/grDevices/libs/grDevices.so
-r-base-core: hardening-no-relro usr/lib/R/library/graphics/libs/graphics.so
-r-base-core: hardening-no-relro usr/lib/R/library/grid/libs/grid.so
-r-base-core: hardening-no-relro usr/lib/R/library/methods/libs/methods.so
-r-base-core: hardening-no-relro usr/lib/R/library/parallel/libs/parallel.so
-r-base-core: hardening-no-relro usr/lib/R/library/splines/libs/splines.so
-r-base-core: hardening-no-relro usr/lib/R/library/stats/libs/stats.so
-r-base-core: hardening-no-relro usr/lib/R/library/tcltk/libs/tcltk.so
-r-base-core: hardening-no-relro usr/lib/R/library/tools/libs/tools.so
-r-base-core: hardening-no-relro usr/lib/R/library/utils/libs/utils.so
-r-base-core: hardening-no-relro usr/lib/R/modules/R_X11.so
-r-base-core: hardening-no-relro usr/lib/R/modules/R_de.so
-r-base-core: hardening-no-relro usr/lib/R/modules/internet.so
-r-base-core: hardening-no-relro usr/lib/R/modules/lapack.so
-r-base-core: hardening-no-relro usr/lib/R/modules/vfonts.so
-r-base-core: extra-license-file usr/share/R/share/licenses/Artistic-2.0
-r-base-core: extra-license-file usr/share/R/share/licenses/GPL-2
-r-base-core: extra-license-file usr/share/R/share/licenses/GPL-3
-r-base-core: extra-license-file usr/share/R/share/licenses/LGPL-2
-r-base-core: extra-license-file usr/share/R/share/licenses/LGPL-2.1
-r-base-core: extra-license-file usr/share/R/share/licenses/LGPL-3
diff --git a/debian/r-base-core.menu b/debian/r-base-core.menu
deleted file mode 100644
index d4333be..0000000
--- a/debian/r-base-core.menu
+++ /dev/null
@@ -1,5 +0,0 @@
-?package(r-base-core): \
- needs="text" \
- section="Applications/Science/Data Analysis" \
- title="GNU R" \
- command="/usr/bin/R"
diff --git a/debian/r-base-core.postinst b/debian/r-base-core.postinst
deleted file mode 100644
index 7007c6e..0000000
--- a/debian/r-base-core.postinst
+++ /dev/null
@@ -1,65 +0,0 @@
-#!/bin/sh
-#
-# postinst script for the Debian GNU/Linux r-base-core package
-# This version originally written by Douglas Bates <bates at stat.wisc.edu>
-# and now written and maintained by Dirk Eddelbuettel <edd at debian.org>
-
-set -e
-
-#DEBHELPER#
-
-
-case "$1" in
- configure)
- # edd 19 Jun 2004 deal with papersize
- # edd 22 Jun 2004 make that conditional on paperconf
- # edd 25 Oct 2006 rewritten for R 2.4.0 and R_PAPERSIZE_USER
- # edd 21 Jun 2008 rewritten for R 2.7.1 and ucf input
- # edd 23 Feb 2013 trying to avoid md5sum issues with help from Andy Beckman
- # edd 26 Feb 2013 correct mode of temp. Renviron file with help from Don Armstrong
- tmpRenviron=$(mktemp)
- chmod 0644 "$tmpRenviron"
- cat /usr/lib/R/etc/Renviron.ucf > "$tmpRenviron"
- #if [ -x /usr/bin/paperconf ]; then
- ## get the value we want from Debian's paperconf utility
- papersize=`paperconf`
- ## have perl subst. second expression with $papersize for first
- ## uses the x mod. and curlies to denote the usual s|1st|2nd|
- perl -p -i -e "s{^R_PAPERSIZE_USER=\\$\{R_PAPERSIZE\}}
- {R_PAPERSIZE_USER=\\$\{R_PAPERSIZE-'$papersize'\}}x" "$tmpRenviron"
- #fi
- # edd 21 Jun 2008 whether or not Renviron was modified, ucf will handle it,
- # so tell ucf that file Renviron.ucf is the source for
- # conffile in /etc and register it
- ucf "$tmpRenviron" /etc/R/Renviron
- ucfr r-base-core /etc/R/Renviron
- rm -f "$tmpRenviron"
- #
- #if [ -x /usr/bin/update-menus ]; then
- # update-menus
- #fi
-
- # edd 03 Apr 2003 cf Section 10.1.2 of Debian Policy
- if [ ! -e /usr/local/lib/R ]; then
- if mkdir /usr/local/lib/R 2>/dev/null; then
- chown root:staff /usr/local/lib/R
- chmod 2775 /usr/local/lib/R
- fi
- fi
- if [ ! -e /usr/local/lib/R/site-library ]; then
- if mkdir /usr/local/lib/R/site-library 2>/dev/null; then
- chown root:staff /usr/local/lib/R/site-library
- chmod 2775 /usr/local/lib/R/site-library
- fi
- fi
-
- #if [ -x /usr/bin/mktexlsr ]; then
- # mktexlsr /usr/share/texmf
- #fi
- ;;
- abort-upgrade|abort-remove|abort-deconfigure)
- ;;
- *)
- echo "postinst called with unknown argument \`$1'" >&2
- ;;
-esac
diff --git a/debian/r-base-core.preinst b/debian/r-base-core.preinst
deleted file mode 100644
index 70102fb..0000000
--- a/debian/r-base-core.preinst
+++ /dev/null
@@ -1,34 +0,0 @@
-#!/bin/sh
-#
-# preinst script for the Debian GNU/Linux r-base-core package
-# This version written by Dirk Eddelbuettel <edd at debian.org>
-
-set -e
-
-#DEBHELPER#
-
-case "$1" in
- install|upgrade)
- # edd 06 Feb 2006 2.2.1-4 created this symlink, we now want a directory
- if [ -h /usr/lib/R/share ]
- then
- echo "Removing symbolic link /usr/lib/R/share"
- rm /usr/lib/R/share
- fi
- # edd 27 Jul 2006 this is now a softlink but used to be a dir
- dir=/usr/share/doc/r-base-core/doc
- if [ -d $dir ] && [ ! -h $dir ]
- then
- rmdir $dir
- fi
- ;;
-
- abort-upgrade)
- ;;
-
- *)
- echo "preinst called with unknown argument \`$1'" >&2
- ;;
-esac
-
-exit 0
diff --git a/debian/r-base-core.prerm b/debian/r-base-core.prerm
deleted file mode 100644
index a73c2d4..0000000
--- a/debian/r-base-core.prerm
+++ /dev/null
@@ -1,26 +0,0 @@
-#!/bin/sh
-#
-# prerm script for the Debian GNU/Linux r-base-core package
-# This version written by Dirk Eddelbuettel <edd at debian.org>
-
-set -e
-
-#DEBHELPER#
-
-case "$1" in
- remove|purge)
- # edd 03 Apr 2003 cf Section 10.1.2 of Debian Policy
- rmdir /usr/local/lib/R/site-library 2>/dev/null || true
- rmdir /usr/local/lib/R/ 2>/dev/null || true
- # edd 10 May 2009 cf Section 10.7.3 of Debian Policy
- # and well as #527618
- rm /etc/R/Renviron 2>/dev/null || true
- ucf --purge /etc/R/Renviron
- ucfr --purge r-base-core /etc/R/Renviron
- ;;
- upgrade|abort-upgrade|abort-remove|abort-deconfigure)
- ;;
- *)
- echo "prerm called with unknown argument \`$1'" >&2
- ;;
-esac
diff --git a/debian/r-base-core.shlibs.hidden b/debian/r-base-core.shlibs.hidden
deleted file mode 100644
index a93d225..0000000
--- a/debian/r-base-core.shlibs.hidden
+++ /dev/null
@@ -1 +0,0 @@
-libR 1 r-base-core (>= 2.9.2)
diff --git a/debian/r-base-dev.dirs b/debian/r-base-dev.dirs
deleted file mode 100644
index 191cd63..0000000
--- a/debian/r-base-dev.dirs
+++ /dev/null
@@ -1 +0,0 @@
-usr/share/R/debian/
diff --git a/debian/r-base-dev.links b/debian/r-base-dev.links
deleted file mode 100644
index 069b00e..0000000
--- a/debian/r-base-dev.links
+++ /dev/null
@@ -1 +0,0 @@
-usr/share/doc/r-base-core usr/share/doc/r-base-dev
diff --git a/debian/r-base-dev.preinst b/debian/r-base-dev.preinst
deleted file mode 100644
index 35850cf..0000000
--- a/debian/r-base-dev.preinst
+++ /dev/null
@@ -1,26 +0,0 @@
-#! /bin/sh
-#
-# r-base-dev.preinst
-#
-# Written and GPL'ed by Dirk Eddelbuettel <edd at debian.org>
-
-set -e
-
-case "$1" in
- install|upgrade)
- # we want symlinks to r-base so old directories cannot exist
- test -d /usr/share/doc/r-base-dev && rm -rf /usr/share/doc/r-base-dev
- ;;
-
- abort-upgrade)
- ;;
-
- *)
- echo "preinst called with unknown argument \`$1'" >&2
- exit 0
- ;;
-esac
-
-#DEBHELPER#
-
-exit 0
diff --git a/debian/r-base-html.files b/debian/r-base-html.files
deleted file mode 100644
index b5d8451..0000000
--- a/debian/r-base-html.files
+++ /dev/null
@@ -1 +0,0 @@
-usr/lib/R/library/*/html/
diff --git a/debian/r-base-latex.dirs b/debian/r-base-latex.dirs
deleted file mode 100644
index 1da8fba..0000000
--- a/debian/r-base-latex.dirs
+++ /dev/null
@@ -1 +0,0 @@
-usr/share/lintian/overrides
diff --git a/debian/r-base-latex.files b/debian/r-base-latex.files
deleted file mode 100644
index 934e6a6..0000000
--- a/debian/r-base-latex.files
+++ /dev/null
@@ -1 +0,0 @@
-usr/lib/R/library/*/latex
diff --git a/debian/r-base-latex.lintian b/debian/r-base-latex.lintian
deleted file mode 100644
index 60cce5b..0000000
--- a/debian/r-base-latex.lintian
+++ /dev/null
@@ -1 +0,0 @@
-r-base-latex: extra-license-file usr/lib/R/library/base/latex/license.tex
diff --git a/debian/r-cran.mk b/debian/r-cran.mk
deleted file mode 100644
index 039976c..0000000
--- a/debian/r-cran.mk
+++ /dev/null
@@ -1,147 +0,0 @@
-#!/usr/bin/make -f
-# -*- makefile -*-
-#
-# Generic debian/rules file for the Debian/GNU Linux r-cran-* packages
-#
-# Should be sufficient for Debianization of CRAN (http://cran.r-project.org)
-# packages. Note that you still need to provide the other files in debian/*,
-# in particular control, changelog and copyright.
-#
-# Copyright 2003 - 2015 by Dirk Eddelbuettel <edd at debian.org>
-
-include /usr/share/cdbs/1/rules/debhelper.mk
-include /usr/share/cdbs/1/class/langcore.mk
-## include /usr/share/cdbs/1/rules/dpatch.mk
-## include /usr/share/cdbs/1/rules/simple-patchsys.mk
-
-# Check whether source format 3.0 (quilt) is used. If yes, do not include the conflicting simple-patchsys.mk
-formatfile := $(CURDIR)/debian/source/format
-format_3_quilt = $(shell if [ -f $(formatfile) ] ; then if grep -q '3.0[[:space:]]*(quilt)' $(formatfile) ; then echo 1 ; else echo 0 ; fi else echo 0 ; fi )
-ifeq ($(format_3_quilt),0)
- include /usr/share/cdbs/1/rules/simple-patchsys.mk
-endif
-
-# awk command to extract word after Package or Bundle, not lowercased
-awkString := "'/^(Package|Bundle):/ {print $$2 }'"
-
-# apply it to the upstream meta-info file DESCRIPTION, also generate a lc version
-cranNameOrig := $(shell awk "$(awkString)" DESCRIPTION)
-#cranName := $(shell echo "$(cranNameOrig)" | tr A-Z a-z | tr . -)
-cranName := $(shell echo "$(cranNameOrig)" | tr A-Z a-z)
-
-## if no debRreposname is known, set default to cran -- thanks, Steffen!
-ifeq ($(debRreposname),)
- debRreposname := cran
-endif
-
-## we can define additional flags for R's make, eg "CXXFLAGS=-g0" for
-## RQuantLib but the default is empty
-## makeFlags :=
-## if makeFlags are defined, then we'll use them in this variable
-## which would otherwise be empty
-ifneq ($(makeFlags),)
- makeFlagsCall := MAKEFLAGS=$(makeFlags)
-endif
-
-## and use the results to build the Debian'ized package name
-package := r-$(debRreposname)-$(cranName)
-
-## awk command to extract word after Priority
-prioritystr := "'/^Priority:/ {print tolower($$2) }'"
-priority := $(shell awk "$(prioritystr)" DESCRIPTION)
-
-ifeq ($(priority),recommended)
- debRdir := usr/lib/R/library
-else
- debRdir := usr/lib/R/site-library
-endif
-
-## current R version in Debian, with thanks to Charles Plessy for the dpkg-query call
-#rversion := $(shell zcat /usr/share/doc/r-base-dev/changelog.Debian.gz | \
-# dpkg-parsechangelog -l- --count 1 | \
-# awk '/^Version/ {print $$2}')
-rversion := $(shell dpkg-query -W -f='$${Version}' r-base-dev)
-rapiversion := $(shell dpkg-query -W -f='$${Provides}' r-base-core | grep -o 'r-api[^, ]*')
-
-## we use these results for the to-be-installed-in directory
-debRlib := $(CURDIR)/debian/$(package)/$(debRdir)
-
-## optional installation of a lintian silencer
-lintiandir := $(CURDIR)/debian/$(package)/usr/share/lintian/overrides
-
-## set built-time in DESCRIPTION time of created binary package based on stamp in changelog
-## cf discussion in http://bugs.debian.org/774031 --- and uncomment two assignments here
-##
-## extract built-timestamp from entry changelog and use as argument
-#builttime := $(shell dpkg-parsechangelog -l$(CURDIR)/debian/changelog | awk -F': ' '/Date/ {print $$2}')
-##
-#builttimeStamp := "--built-timestamp=\"$(builttime)\""
-##
-## else
-#builttimeStamp := ""
-#
-## Bug report #782764 with patch by Philipp Rinn building on what we had above
-## if no builttimeStamp is supplied, set built-time (to be set in DESCRIPTION)
-## to time of created source package based on stamp in changelog.
-## See discussion in http://bugs.debian.org/774031
-
-ifeq ($(builttimeStamp),)
- builttime := $(shell dpkg-parsechangelog -l$(CURDIR)/debian/changelog | awk -F': ' '/Date/ {print $$2}')
- builttimeStamp := "--built-timestamp=\"$(builttime)\""
-endif
-
-common-install-indep:: R_any_arch
-common-install-arch:: R_any_arch
-
-R_any_arch:
- ## create the target directory
- dh_installdirs $(debRdir)
- ##
- ## support ${R:Depends} via debian/${package}.substvars
- echo "R:Depends=r-base-core (>= ${rversion}), ${rapiversion}" >> debian/$(package).substvars
- ##
- ## call R to install the sources we're looking at
- ## use this inside xvfb-run if this wrapper is installed
- if test -f /usr/bin/xvfb-run; then \
- $(makeFlagsCall) xvfb-run -a \
- R CMD INSTALL -l $(debRlib) --clean \
- $(extraInstallFlags) . \
- $(builttimeStamp) \
- ; \
- else \
- $(makeFlagsCall) R CMD INSTALL -l $(debRlib) \
- --clean $(extraInstallFlags) . \
- $(builttimeStamp) \
- ; \
- fi
- ## remove extra files which are present in some packages
- rm -vf $(debRlib)/R.css \
- $(debRlib)/$(cranNameOrig)/COPYING \
- $(debRlib)/$(cranNameOrig)/LICENSE.txt \
- $(debRlib)/$(cranNameOrig)/LICENSE
- ## if we have an overrides file for lintian, install it
- if test -f debian/overrides; then \
- install -d $(lintiandir) ; \
- install -m 0644 debian/overrides \
- $(lintiandir)/$(package); \
- fi
-
-## clean target from patch by Steffen Moeller on 16 May 2009
-clean::
- ## the re-invocation of a build process should not
- ## leave a footprint in Debian's diff.gz.
- if test -d src; then \
- find src -regex ".*\.o" | \
- xargs --no-run-if-empty -r rm; \
- fi
- rm -f config.log config.status
- ## the configure file is provided by upstream but
- ## could be recreated by a call to 'autoconf'.
- #if [ -r configure.in ]; then \
- # rm -f configure \
- #fi
- ##
- # if [ -r src/Makevars.in ]; then \
- # rm -f src/Makevars; \
- # fi
-
diff --git a/debian/r-doc-html.doc-base.admin b/debian/r-doc-html.doc-base.admin
deleted file mode 100644
index 4d6f068..0000000
--- a/debian/r-doc-html.doc-base.admin
+++ /dev/null
@@ -1,9 +0,0 @@
-Document: r-admin
-Title: R Installation and Administration
-Author: R Core
-Abstract: This guide describes installation and administration for R.
-Section: Science/Data Analysis
-
-Format: HTML
-Index: /usr/share/doc/r-doc-html/manual/R-admin.html
-Files: /usr/share/doc/r-doc-html/manual/R-admin.html
diff --git a/debian/r-doc-html.doc-base.data b/debian/r-doc-html.doc-base.data
deleted file mode 100644
index bd1b23e..0000000
--- a/debian/r-doc-html.doc-base.data
+++ /dev/null
@@ -1,9 +0,0 @@
-Document: r-data
-Title: R Data Import/Export
-Author: R Core
-Abstract: This is a guide to importing and exporting data to and from R.
-Section: Science/Data Analysis
-
-Format: HTML
-Index: /usr/share/doc/r-doc-html/manual/R-data.html
-Files: /usr/share/doc/r-doc-html/manual/R-data.html
diff --git a/debian/r-doc-html.doc-base.exts b/debian/r-doc-html.doc-base.exts
deleted file mode 100644
index 850f81e..0000000
--- a/debian/r-doc-html.doc-base.exts
+++ /dev/null
@@ -1,11 +0,0 @@
-Document: r-extensions
-Title: R Writing Extensions
-Author: R Core
-Abstract: This is a guide to extending R, describing the process of creating R
- add-on packages, writing R documentation, R's system and foreign
- language interfaces, and the R API.
-Section: Science/Data Analysis
-
-Format: HTML
-Index: /usr/share/doc/r-doc-html/manual/R-exts.html
-Files: /usr/share/doc/r-doc-html/manual/R-exts.html
diff --git a/debian/r-doc-html.doc-base.faq b/debian/r-doc-html.doc-base.faq
deleted file mode 100644
index 040b0a7..0000000
--- a/debian/r-doc-html.doc-base.faq
+++ /dev/null
@@ -1,10 +0,0 @@
-Document: r-faq
-Title: R Frequently Asked Questions
-Author: R Core
-Abstract: This document contains answers to some of the most frequently asked
- questions about R.
-Section: Science/Data Analysis
-
-Format: HTML
-Index: /usr/share/doc/r-doc-html/manual/R-FAQ.html
-Files: /usr/share/doc/r-doc-html/manual/R-FAQ.html
diff --git a/debian/r-doc-html.doc-base.intro b/debian/r-doc-html.doc-base.intro
deleted file mode 100644
index 65324a1..0000000
--- a/debian/r-doc-html.doc-base.intro
+++ /dev/null
@@ -1,17 +0,0 @@
-Document: r-intro
-Title: R Introduction
-Author: R Core
-Abstract: This is an introduction to R ("GNU S"), a language and environment
- for statistical computing and graphics. R is similar to the award-winning
- S system, which was developed at Bell Laboratories by John Chambers et
- al. It provides a wide variety of statistical and graphical techniques
- (linear and nonlinear modelling, statistical tests, time series
- analysis, classification, clustering, ...).
- .
- This manual provides information on data types, programming elements,
- statistical modelling and graphics.
-Section: Science/Data Analysis
-
-Format: HTML
-Index: /usr/share/doc/r-doc-html/manual/R-intro.html
-Files: /usr/share/doc/r-doc-html/manual/R-intro.html
diff --git a/debian/r-doc-html.doc-base.ints b/debian/r-doc-html.doc-base.ints
deleted file mode 100644
index 4c9a57e..0000000
--- a/debian/r-doc-html.doc-base.ints
+++ /dev/null
@@ -1,10 +0,0 @@
-Document: r-ints
-Title: R Internals
-Author: R Core
-Abstract: This is a guide to the internal structures of R ("GNU S"), and the
- coding standards for the core team working on R itself.
-Section: Science/Data Analysis
-
-Format: HTML
-Index: /usr/share/doc/r-doc-html/manual/R-ints.html
-Files: /usr/share/doc/r-doc-html/manual/R-ints.html
diff --git a/debian/r-doc-html.doc-base.lang b/debian/r-doc-html.doc-base.lang
deleted file mode 100644
index 5552465..0000000
--- a/debian/r-doc-html.doc-base.lang
+++ /dev/null
@@ -1,11 +0,0 @@
-Document: r-language
-Title: R Language Definition
-Author: R Core
-Abstract: This is an introduction to the R language, explaining evaluation,
- parsing, object oriented programming, computing on the language, and
- so forth.
-Section: Science/Data Analysis
-
-Format: HTML
-Index: /usr/share/doc/r-doc-html/manual/R-lang.html
-Files: /usr/share/doc/r-doc-html/manual/R-lang.html
diff --git a/debian/r-doc-html.files b/debian/r-doc-html.files
deleted file mode 100644
index 501a48f..0000000
--- a/debian/r-doc-html.files
+++ /dev/null
@@ -1 +0,0 @@
-usr/share/R/doc/manual/*.html
diff --git a/debian/r-doc-html.links b/debian/r-doc-html.links
deleted file mode 100644
index 72c5f3e..0000000
--- a/debian/r-doc-html.links
+++ /dev/null
@@ -1,7 +0,0 @@
-usr/share/R/doc/manual/R-admin.html usr/share/doc/r-doc-html/manual/R-admin.html
-usr/share/R/doc/manual/R-data.html usr/share/doc/r-doc-html/manual/R-data.html
-usr/share/R/doc/manual/R-exts.html usr/share/doc/r-doc-html/manual/R-exts.html
-usr/share/R/doc/manual/R-FAQ.html usr/share/doc/r-doc-html/manual/R-FAQ.html
-usr/share/R/doc/manual/R-intro.html usr/share/doc/r-doc-html/manual/R-intro.html
-usr/share/R/doc/manual/R-ints.html usr/share/doc/r-doc-html/manual/R-ints.html
-usr/share/R/doc/manual/R-lang.html usr/share/doc/r-doc-html/manual/R-lang.html
diff --git a/debian/r-doc-html.links.hidden b/debian/r-doc-html.links.hidden
deleted file mode 100644
index ac34087..0000000
--- a/debian/r-doc-html.links.hidden
+++ /dev/null
@@ -1 +0,0 @@
-usr/share/doc/r-base usr/share/doc/r-doc-html
diff --git a/debian/r-doc-html.preinst b/debian/r-doc-html.preinst
deleted file mode 100644
index 608646b..0000000
--- a/debian/r-doc-html.preinst
+++ /dev/null
@@ -1,32 +0,0 @@
-#!/bin/sh
-#
-# preinst script for the Debian GNU/Linux r-doc-html package
-# This version written by Dirk Eddelbuettel <edd at debian.org>
-
-set -e
-
-#DEBHELPER#
-
-case "$1" in
- install|upgrade)
- # edd 05 Jul 2006 from with the /usr/lib -> /usr/share transition
- # edd 12 Aug 2006 make sure it is a symlink and not a directory
- # edd 29 Aug 2006 make sure $dir does not contain trailing slash
- dir=/usr/share/doc/r-doc-html/manual
- if [ -h $dir ]
- then
- echo "Removing symbolic link $dir"
- rm $dir
- fi
- ;;
-
- abort-upgrade)
- ;;
-
- *)
- echo "preinst called with unknown argument \`$1'" >&2
- ;;
-esac
-
-exit 0
-
diff --git a/debian/r-doc-info.files b/debian/r-doc-info.files
deleted file mode 100644
index 6f7a137..0000000
--- a/debian/r-doc-info.files
+++ /dev/null
@@ -1 +0,0 @@
-usr/share/info/
diff --git a/debian/r-doc-pdf.files b/debian/r-doc-pdf.files
deleted file mode 100644
index 9cf6b46..0000000
--- a/debian/r-doc-pdf.files
+++ /dev/null
@@ -1 +0,0 @@
-usr/share/R/doc/manual/*.pdf
diff --git a/debian/r-doc-pdf.links b/debian/r-doc-pdf.links
deleted file mode 100644
index cb7bb30..0000000
--- a/debian/r-doc-pdf.links
+++ /dev/null
@@ -1,10 +0,0 @@
-usr/share/R/doc/manual/R-admin.pdf usr/share/doc/r-doc-pdf/manual/R-admin.pdf
-usr/share/R/doc/manual/R-data.pdf usr/share/doc/r-doc-pdf/manual/R-data.pdf
-usr/share/R/doc/manual/R-exts.pdf usr/share/doc/r-doc-pdf/manual/R-exts.pdf
-usr/share/R/doc/manual/R-FAQ.pdf usr/share/doc/r-doc-pdf/manual/R-FAQ.pdf
-usr/share/R/doc/manual/R-intro.pdf usr/share/doc/r-doc-pdf/manual/R-intro.pdf
-usr/share/R/doc/manual/R-ints.pdf usr/share/doc/r-doc-pdf/manual/R-ints.pdf
-usr/share/R/doc/manual/R-lang.pdf usr/share/doc/r-doc-pdf/manual/R-lang.pdf
-usr/share/R/doc/manual/refman.pdf usr/share/doc/r-doc-pdf/manual/refman.pdf
-
-
diff --git a/debian/r-doc-pdf.links.hidden b/debian/r-doc-pdf.links.hidden
deleted file mode 100644
index a5e9b2c..0000000
--- a/debian/r-doc-pdf.links.hidden
+++ /dev/null
@@ -1 +0,0 @@
-usr/share/doc/r-base usr/share/doc/r-doc-pdf
diff --git a/debian/r-doc-pdf.preinst b/debian/r-doc-pdf.preinst
deleted file mode 100644
index dd5a53f..0000000
--- a/debian/r-doc-pdf.preinst
+++ /dev/null
@@ -1,26 +0,0 @@
-#! /bin/sh
-#
-# r-doc-pdf.preinst
-#
-# Written and GPL'ed by Dirk Eddelbuettel <edd at debian.org>
-
-set -e
-
-case "$1" in
- install|upgrade)
- # we want symlinks to r-base so old directories cannot exist
- test -d /usr/share/doc/r-doc-pdf && rm -rf /usr/share/doc/r-doc-pdf
- ;;
-
- abort-upgrade)
- ;;
-
- *)
- echo "preinst called with unknown argument \`$1'" >&2
- exit 0
- ;;
-esac
-
-#DEBHELPER#
-
-exit 0
diff --git a/debian/r-gnome.NEWS b/debian/r-gnome.NEWS
deleted file mode 100644
index a810056..0000000
--- a/debian/r-gnome.NEWS
+++ /dev/null
@@ -1,13 +0,0 @@
-r-gnome (2.0.1.alpha.20050403-1) experimental; urgency=low
-
- * The experimental and incomplete Gnome UI is no longer included
- in the upstream R sources as of the R 2.1.0 release.
-
- Hence, this Debian package is now an empty transition package
- which will eventually disappear.
-
- The old code for the R Gnome frontend is still available via
- svn co https://svn.r-project.org/R-packages/trunk/gnomeGUI
-
- -- Dirk Eddelbuettel <edd at debian.org> Sun, 3 Apr 2005 16:04:29 -0500
-
diff --git a/debian/r-gnome.links b/debian/r-gnome.links
deleted file mode 100644
index 646c5d5..0000000
--- a/debian/r-gnome.links
+++ /dev/null
@@ -1 +0,0 @@
-usr/share/doc/r-base-core usr/share/doc/r-gnome
diff --git a/debian/r-gnome.lintian b/debian/r-gnome.lintian
deleted file mode 100644
index 6ef26a4..0000000
--- a/debian/r-gnome.lintian
+++ /dev/null
@@ -1 +0,0 @@
-r-gnome: menu-command-not-in-package /usr/lib/menu/r-gnome:4 /usr/bin/R
diff --git a/debian/r-gnome.menu b/debian/r-gnome.menu
deleted file mode 100644
index f139ee2..0000000
--- a/debian/r-gnome.menu
+++ /dev/null
@@ -1,4 +0,0 @@
-?package(r-gnome):needs="x11" \
- section="Apps/Math" \
- title="GNU R (Gnome)" \
- command="/usr/bin/R --gui=GNOME --no-save"
diff --git a/debian/r-gnome.preinst b/debian/r-gnome.preinst
deleted file mode 100644
index 06fc5f8..0000000
--- a/debian/r-gnome.preinst
+++ /dev/null
@@ -1,26 +0,0 @@
-#! /bin/sh
-#
-# r-gnome.preinst
-#
-# Written and GPL'ed by Dirk Eddelbuettel <edd at debian.org>
-
-set -e
-
-case "$1" in
- install|upgrade)
- # we want symlinks to r-base so old directories cannot exist
- test -d /usr/share/doc/r-gnome && rm -rf /usr/share/doc/r-gnome
- ;;
-
- abort-upgrade)
- ;;
-
- *)
- echo "preinst called with unknown argument \`$1'" >&2
- exit 0
- ;;
-esac
-
-#DEBHELPER#
-
-exit 0
diff --git a/debian/r-mathlib.dirs b/debian/r-mathlib.dirs
deleted file mode 100644
index 1da8fba..0000000
--- a/debian/r-mathlib.dirs
+++ /dev/null
@@ -1 +0,0 @@
-usr/share/lintian/overrides
diff --git a/debian/r-mathlib.files b/debian/r-mathlib.files
deleted file mode 100644
index 8dadadd..0000000
--- a/debian/r-mathlib.files
+++ /dev/null
@@ -1,3 +0,0 @@
-usr/lib/libRmath*
-usr/lib/pkgconfig/libRmath.pc
-
diff --git a/debian/r-mathlib.links.hidden b/debian/r-mathlib.links.hidden
deleted file mode 100644
index 2b50f88..0000000
--- a/debian/r-mathlib.links.hidden
+++ /dev/null
@@ -1 +0,0 @@
-usr/share/doc/r-base-core usr/share/doc/r-mathlib
diff --git a/debian/r-mathlib.lintian b/debian/r-mathlib.lintian
deleted file mode 100644
index e6ea6da..0000000
--- a/debian/r-mathlib.lintian
+++ /dev/null
@@ -1,4 +0,0 @@
-r-mathlib: non-dev-pkg-with-shlib-symlink usr/lib/libRmath.so.1.0.0 usr/lib/libRmath.so
-r-mathlib: missing-depends-line
-r-mathlib: package-name-doesnt-match-sonames libRmath1
-r-mathlib: hardening-no-relro usr/lib/libRmath.so.1.0.0
diff --git a/debian/r-mathlib.postinst b/debian/r-mathlib.postinst
deleted file mode 100644
index 6a20f8d..0000000
--- a/debian/r-mathlib.postinst
+++ /dev/null
@@ -1,27 +0,0 @@
-##!/bin/sh -e
-#
-# postinst script for the Debian GNU/Linux r-mathlib package
-#
-# Written and GPL'ed by Dirk Eddelbuettel <edd at debian.org>
-
-#DEBHELPER#
-
-ldconfig
-
-case "$1" in
-
- configure)
- ;;
-
- upgrade|abort-upgrade|abort-remove|abort-deconfigure)
- ;;
-
- *)
- echo "postinst called with unknown argument \`$1'" >&2
- ;;
-
-esac
-
-exit 0
-
-
diff --git a/debian/r-mathlib.shlibs.hidden b/debian/r-mathlib.shlibs.hidden
deleted file mode 100644
index 9f0532f..0000000
--- a/debian/r-mathlib.shlibs.hidden
+++ /dev/null
@@ -1 +0,0 @@
-libRmath 1 r-mathlib (>= 2.0)
diff --git a/debian/r-recommended.dirs b/debian/r-recommended.dirs
deleted file mode 100644
index a66cdf1..0000000
--- a/debian/r-recommended.dirs
+++ /dev/null
@@ -1,2 +0,0 @@
-usr/lib/R/library
-usr/share/lintian/overrides
diff --git a/debian/r-recommended.files b/debian/r-recommended.files
deleted file mode 100644
index 83e2770..0000000
--- a/debian/r-recommended.files
+++ /dev/null
@@ -1,14 +0,0 @@
-usr/lib/R/library/KernSmooth/
-usr/lib/R/library/MASS/
-usr/lib/R/library/class/
-usr/lib/R/library/nnet/
-usr/lib/R/library/spatial/
-usr/lib/R/library/boot/
-usr/lib/R/library/cluster/
-usr/lib/R/library/foreign/
-usr/lib/R/library/grid/
-usr/lib/R/library/lattice/
-usr/lib/R/library/mgcv/
-usr/lib/R/library/nlme/
-usr/lib/R/library/rpart/
-usr/lib/R/library/survival/
diff --git a/debian/r-recommended.links b/debian/r-recommended.links
deleted file mode 100644
index bd86d0e..0000000
--- a/debian/r-recommended.links
+++ /dev/null
@@ -1 +0,0 @@
-usr/share/doc/r-base-core usr/share/doc/r-recommended
diff --git a/debian/r-recommended.lintian b/debian/r-recommended.lintian
deleted file mode 100644
index 13289ad..0000000
--- a/debian/r-recommended.lintian
+++ /dev/null
@@ -1,8 +0,0 @@
-r-recommended: extra-license-file usr/lib/R/library/MASS/LICENCE
-r-recommended: extra-license-file usr/lib/R/library/class/LICENCE
-r-recommended: extra-license-file usr/lib/R/library/nnet/LICENCE
-r-recommended: extra-license-file usr/lib/R/library/spatial/LICENCE
-r-recommended: extra-license-file usr/lib/R/library/nlme/COPYING
-r-recommended: extra-license-file usr/lib/R/library/survival/COPYING
-r-recommended: package-contains-empty-directory usr/lib/R/library/
-r-recommended: package-contains-empty-directory usr/share/lintian/overrides/
diff --git a/debian/r-recommended.preinst b/debian/r-recommended.preinst
deleted file mode 100644
index 170ae03..0000000
--- a/debian/r-recommended.preinst
+++ /dev/null
@@ -1,26 +0,0 @@
-#! /bin/sh
-#
-# r-recommended.preinst
-#
-# Written and GPL'ed by Dirk Eddelbuettel <edd at debian.org>
-
-set -e
-
-case "$1" in
- install|upgrade)
- # we want symlinks to r-base so old directories cannot exist
- test -d /usr/share/doc/r-recommended && rm -rf /usr/share/doc/r-recommended
- ;;
-
- abort-upgrade)
- ;;
-
- *)
- echo "preinst called with unknown argument \`$1'" >&2
- exit 0
- ;;
-esac
-
-#DEBHELPER#
-
-exit 0
diff --git a/debian/reproducibility-patch/R-set-buildstamp-via-INSTALL.patch b/debian/reproducibility-patch/R-set-buildstamp-via-INSTALL.patch
deleted file mode 100644
index de058cf..0000000
--- a/debian/reproducibility-patch/R-set-buildstamp-via-INSTALL.patch
+++ /dev/null
@@ -1,63 +0,0 @@
-Index: src/library/tools/R/admin.R
-===================================================================
---- src/library/tools/R/admin.R (revision 67410)
-+++ src/library/tools/R/admin.R (working copy)
-@@ -21,7 +21,7 @@
-
- ## called from basepkg.mk and .install_packages
- .install_package_description <-
--function(dir, outDir)
-+function(dir, outDir, builtStamp=character())
- {
- ## Function for taking the DESCRIPTION package meta-information,
- ## checking/validating it, and installing it with the 'Built:'
-@@ -66,8 +66,9 @@
- "; ",
- if(dir.exists(file.path(dir, "src"))) OStype else "",
- "; ",
-+ ## Some build systems want to supply a package-build timestamp for reproducibility
- ## Prefer date in ISO 8601 format, UTC.
-- format(Sys.time(), tz = "UTC", usetz = TRUE),
-+ if (length(builtStamp)==0) format(Sys.time(), tz = "UTC", usetz = TRUE) else builtStamp,
- ## Sys.time(),
- "; ",
- .OStype())
-Index: src/library/tools/R/install.R
-===================================================================
---- src/library/tools/R/install.R (revision 67410)
-+++ src/library/tools/R/install.R (working copy)
-@@ -180,6 +180,8 @@
- " --configure-vars=VARS",
- " set variables for the configure scripts (if any)",
- " --dsym (OS X only) generate dSYM directory",
-+ " --built-timestamp=STAMP",
-+ " set timestamp for Built: entry in DESCRIPTION",
- "\nand on Windows only",
- " --force-biarch attempt to build both architectures",
- " even if there is a non-empty configure.win",
-@@ -652,7 +654,7 @@
- Sys.chmod(file.path(instdir, f), fmode)
- }
-
-- res <- try(.install_package_description('.', instdir))
-+ res <- try(.install_package_description('.', instdir, built_stamp))
- if (inherits(res, "try-error"))
- pkgerrmsg("installing package DESCRIPTION failed", pkg_name)
- if (!file.exists(namespace <- file.path(instdir, "NAMESPACE")) ) {
-@@ -1274,6 +1276,7 @@
- resave_data <- FALSE
- compact_docs <- FALSE
- keep.source <- getOption("keep.source.pkgs")
-+ built_stamp <- character()
-
- install_libs <- TRUE
- install_R <- TRUE
-@@ -1401,6 +1404,8 @@
- byte_compile <- FALSE
- } else if (a == "--dsym") {
- dsym <- TRUE
-+ } else if (substr(a, 1, 18) == "--built-timestamp=") {
-+ built_stamp <- substr(a, 19, 1000)
- } else if (substr(a, 1, 1) == "-") {
- message("Warning: unknown option ", sQuote(a), domain = NA)
- } else pkgs <- c(pkgs, a)
diff --git a/debian/reproducibility-patch/R-set-buildstamp-via-MAKE-env-var.patch b/debian/reproducibility-patch/R-set-buildstamp-via-MAKE-env-var.patch
deleted file mode 100644
index b77bcc5..0000000
--- a/debian/reproducibility-patch/R-set-buildstamp-via-MAKE-env-var.patch
+++ /dev/null
@@ -1,32 +0,0 @@
-Index: share/make/basepkg.mk
-===================================================================
---- share/make/basepkg.mk (revision 67410)
-+++ share/make/basepkg.mk (working copy)
-@@ -85,15 +85,25 @@
-
- mkdesc:
- @if test -f DESCRIPTION; then \
-+ if test "$(PKG_BUILT_STAMP)" != ""; then \
-+ $(ECHO) "tools:::.install_package_description('.', '$(top_builddir)/library/${pkg}', '$(PKG_BUILT_STAMP)')" | \
-+ R_DEFAULT_PACKAGES=NULL $(R_EXE) > /dev/null ; \
-+ else \
- $(ECHO) "tools:::.install_package_description('.', '$(top_builddir)/library/${pkg}')" | \
- R_DEFAULT_PACKAGES=NULL $(R_EXE) > /dev/null ; \
-+ fi; \
- fi
-
- ## for base and tools
- mkdesc2:
- @$(INSTALL_DATA) DESCRIPTION $(top_builddir)/library/$(pkg)
-- @$(ECHO) "Built: R $(VERSION); ; `TZ=UTC date`; $(R_OSTYPE)" \
-- >> $(top_builddir)/library/$(pkg)/DESCRIPTION
-+ @if test "$(PKG_BUILT_STAMP)" != ""; then \
-+ $(ECHO) "Built: R $(VERSION); ; $(PKG_BUILT_STAMP); $(R_OSTYPE)" \
-+ >> $(top_builddir)/library/$(pkg)/DESCRIPTION ; \
-+ else \
-+ $(ECHO) "Built: R $(VERSION); ; `TZ=UTC date`; $(R_OSTYPE)" \
-+ >> $(top_builddir)/library/$(pkg)/DESCRIPTION ; \
-+ fi
-
- mkdemos:
- @$(ECHO) "tools:::.install_package_demos('$(srcdir)', '$(top_builddir)/library/$(pkg)')" | \
diff --git a/debian/rules b/debian/rules
deleted file mode 100755
index 5805dc4..0000000
--- a/debian/rules
+++ /dev/null
@@ -1,741 +0,0 @@
-#!/usr/bin/make -f
-# debian/rules file for the Debian GNU/Linux r-base package
-# Copyright 1997-2003 Douglas Bates <bates at stat.wisc.edu>
-# Copyright 1998-2016 Dirk Eddelbuettel <edd at debian.org>
-#
-# $Id: rules,v 1.3 2007/05/06 17:13:23 edd Exp edd $
-
-corepackage = r-base-core
-devpackage = r-base-dev
-#latexpackage = r-base-latex
-pdfpackage = r-doc-pdf
-htmlpackage = r-doc-html
-nmathpackage = r-mathlib
-infopackage = r-doc-info
-recdpackage = r-recommended
-dbugpackage = r-base-core-dbg
-
-# for the standalone library, no sonames are assigned in the upstream Makefiles
-somaj = 1
-somin = 0
-sorel = 0
-libver = $(somaj).$(somin).$(sorel)
-
-debbase := $(CURDIR)/debian
-debtmp := $(debbase)/$(corepackage)
-debdoc := $(debbase)/$(corepackage)/usr/share/doc/$(corepackage)
-debmat := $(debbase)/$(nmathpackage)
-debetc := $(debbase)/$(corepackage)/usr/lib/R/etc
-debinf := $(debbase)/$(infopackage)
-debcnf := $(debbase)/$(corepackage)/etc/R
-
-## edd 24 Oct 2005 use DEB_BUILD_GNU_CPU, not DEB_BUILD_GNU_TYPE
-## updated rules throughout
-arch := $(shell dpkg-architecture -qDEB_BUILD_GNU_CPU)
-buildarch := $(shell dpkg-architecture -qDEB_BUILD_GNU_TYPE)
-## edd 26 Jul 2013 also use DEB_HOST_ARCH_OS to catch kFreeBSD
-buildos := $(shell dpkg-architecture -qDEB_HOST_ARCH_OS)
-#export DH_VERBOSE = 1
-
-# edd 15 Aug 2001 default to blas, atlas can override it
-#atlas = --with-blas=blas
-# dmb 04 Apr 2003 better to use no specify blas
-# atlas = --with-blas
-# edd 28 Apr 2003 try configuring with atlas
-# atlas = --with-blas=atlas
-# edd 16 Oct 2003 back to older default
-#atlas = --with-blas=blas
-# edd 26 Feb 2004 point to refblas3
-#atlas = --with-blas=-lblas-3
-# edd 05 Feb 2008 default blas
-atlas = --with-blas
-
-# edd 08 Mar 2003 use the new lapack feature
-# edd 27 Apr 2003 Set this to =no as we currently see numerical errors
-#lapack = --with-lapack=no
-# edd 26 Feb 2004 point to lapack3
-#lapack = --with-lapack=-llapack-3
-# edd 13 Oct 2004 Set this once again to =no as we still see numerical errors
-#lapack = --with-lapack=no
-# edd 05 Feb 2008 switched back
-# edd 05 Feb 2008 oh, no switch back to internal lapack -- see #464833
-#lapack = --with-lapack=no
-# edd 05 Mar 2008 with lapack as we can now use lapack 3.1 in unstable
-lapack = --with-lapack
-
-# edd 02 Sep 2001 default to g77 but let m68k use f2c
-# edd 06 Mar 2003 enforce 3.2 versions explicitly
-# so that on testing we will pick them over 2.95
-# edd 07 Jun 2003 let's fall back to the default compilers
-# edd 08 Sep 2005 real defaults, i.e. remove -3.4 strings
-# edd 03 Apr 2006 switch to gfortran
-# edd 04 Apr 2006 use optimflags, build per-compiler flags later
-# edd 26 Jun 2007 need 4.2 for fortran linking
-# edd 26 Nov 2007 4.2 is now default, so no longer set -4.2 explictly; also add f95compiler
-# edd 11 Oct 2011 setting -std=gnu99 with compiler (thanks, Kurt Hornik)
-fortrancompiler = F77=gfortran
-f95compiler = gfortran
-# edd 10 Jan 2016 mips currently needs gcc-4.9 (cf #810357) and big thanks to Sébastien Villemot
-# edd 12 Apr 2016 mips treatment removed again after kernel fix on
-#ifeq ($(arch),mips)
-#compiler = "gcc-4.9 -std=gnu99"
-#else
-compiler = "gcc -std=gnu99"
-#endif
-cxxcompiler = g++
-
-# edd 31 Mar 2014
-#optimflags = -O3 -pipe
-optimflags = $(shell dpkg-buildflags --get CFLAGS)
-# edd 08 Apr 2014 add CPPFLAGS
-optimflags += $(shell dpkg-buildflags --get CPPFLAGS)
-
-# edd 22 Apr 2012 gcc-4.7 needs -O2 to build R (also #67359)
-ifneq "$(shell gcc --version | head -1 | cut -d' ' -f4 | grep '^4.7')" ""
-optimflags = -O2 -pipe
-endif
-
-# edd 04 Sep 2001 default compiler flags, lowered for m68k
-#compilerflags = -O2
-# m68k barks when using g77, and when gcc use -O2
-# edd 26 Nov 2002 switched back to g77
-# edd 02 Jun 2003 switched back
-# cts 04 Jun 2003 use -O1 on m68k
-#ifeq ($(arch),m68k)
-#fortrancompiler = F2C=f2c
-#compilerflags = -O1
-#endif
-
-# edd 14 Nov 2003 turn blas off on arm
-# edd 12 May 2010 no longer needed -- thx to Modestas Vainius
-#ifeq ($(arch),arm)
-#atlas = --without-blas
-#endif
-
-## edd 09 Nov 2001 ia64 needs gcc-3.0, hppa gets it by default
-#ifeq ($(arch),ia64)
-#fortrancompiler = F77=g77-3.0
-#compiler = gcc-3.0
-#cxxcompiler = g++-3.0
-#compilerflags = -O2
-#endif
-
-## lamont at debian.org 06 Dec 2001 hppa needs -ffunction-sections
-ifeq ($(arch),hppa)
-optimflags = -O2 -ffunction-sections
-endif
-
-## edd 20 Jun 2002 no optimisation or debugging on baby systems
-## edd 02 Jun 2003 use this on arm only
-## edd 12 May 2010 no longer use it on arm either -- thx Modestas
-## edd 04 Aug 2010 on mips and mipsel, don't use -g
-## edd 10 Jan 2016 turn all off again
-##ifneq "$(findstring $(arch), m68k arm)" ""
-#ifneq "$(findstring $(arch), arm)" ""
-#ifneq "$(findstring $(arch), mips mipsel)" ""
-#optimflags = -g0
-##optimflags = -O0 -g0
-#endif
-
-## edd 04 Apr 2009 Alpha dies on deriv.c, trying will less optimisation
-## edd 16 Apr 2009 commented-out as Kurt Roeckx applied a gcc patch
-#ifeq ($(arch),alpha)
-#optimflags = -O2 -g0
-#endif
-
-## edd 09 Apr 2006 per patch from Andreas Jochens in #361604
-ifeq ($(arch),powerpc64)
-optimflags += -mminimal-toc
-endif
-
-## edd 26 Jul 2013 kFreeBSD wants -O2 per #714506
-ifeq ($(buildos),kfreebsd)
-optimflags = -O2 -pipe
-endif
-
-
-## edd 04 Apr 2006 generalize from old compilerflags to per-compiler
-## edd 11 Oct 2011 -std=gnu goes to CC (thanks to Kurt Hornik)
-cflags = $(optimflags)
-cxxflags = $(optimflags)
-## edd 31 Mar 2014 with thanks to Julian Gilbey in #726913
-#fcflags = $(optimflags)
-fcflags = $(shell dpkg-buildflags --get FFLAGS)
-
-## edd 17 Sep 2006 suggested by Brian Ripley in email dated 15 Sep 2006
-#ldflags = -Wl,-O1,-Bdirect,--hash-style=both
-#ldflags = -Wl,-O1
-## edd 06 May 2007 try it
-## edd 05 Feb 2008 still no go under gcc 4.3
-#ldflags = -Wl,-O1,-Bdirect,--hash-style=both
-## edd 31 Mar 2014
-ldflags = $(shell dpkg-buildflags --get LDFLAGS)
-
-## edd 16 Apr 2008 add -g to optim flags to allow for -dbg package
-optimflags += -g
-
-## 12 Jan 2015
-## Support for #774031 uncomment the two assignment to pass a non-empty string for this to hold
-#builttime := $(shell dpkg-parsechangelog -l$(CURDIR)/debian/changelog | awk -F': ' '/Date/ {print $$2}')
-#builttimestamp := "$(builttime)"
-buildtimestamp := ""
-
-#arch = kfreebsd-amd64
-maketest:
- @echo "Hi $(arch)"
- @echo "$(findstring $(arch), i486 hppa arm)"
-ifeq "$(findstring $(arch), kfreebsd-amd64 x86_64 hppa arm)" ""
- @echo "**** TRUE if the arch is NOT in the list as !find == '' ***"
-endif
-ifneq "$(findstring $(arch), kfreebsd-amd64 x86_64 i486 hppa arm)" ""
- @echo "**** TRUE if the arch is in list as find != '' is TRUE ***"
-endif
- @echo Bye
-
-get-orig-source: upstream
-upstream:
- #links http://cran.us.r-project.org/src/base
- links http://cran.r-project.org/src/base/?M=D
-
-upstreamdevel:
- links ftp://ftp.stat.math.ethz.ch/Software/R
- #links http://cran.us.r-project.org/src/base
- #rsync -vaC rsync.r-project.org::r-devel .
-
-prerelease:
- links http://cran.r-project.org/src/base-prerelease
-
-denmark:
- links http://www.biostat.ku.dk/~pd/R-release
-
-
-## edd 24 Oct 2003 build is invoked by the buildd, so we would prefer to
-## not imply build-indep; unfortunately R does not build
-## properly without it, so we have to stick with it
-## edd 15 Jan 2004 trying again on build only build: build-arch build-indep
-## the main hook is to then have binary depend on both
-## binary-arch and binary-indep, and those on their builds
-build: build-arch
-
-build-arch: make-arch
-ifeq (,$(filter nocheck,$(DEB_BUILD_OPTIONS)))
-build-arch: check
-endif
-
-build-indep: make-indep
-
-configure: configure-stamp
-configure-stamp:
- @echo "*** configure ***"
-
- # we have to disable use of the expanded R_LD_LIBRARY_PATH as it
- # conflicts with Debian's Atlas-can-replace-Blas scheme
- # so set R_LD_LIBRARY_PATH to the minimal value R_HOME/bin
- # and discard what configure finds for it on this machine
- ## edd 06 May 2007 no longer used in R.sh.in
- #perl -p -i -e 's|:\@R_LD_LIBRARY_PATH\@||' src/scripts/R.sh.in
-
- # edd 15 Dec 2009 the sh4 architecture needs newer configure than
- # R Core uses, so following Kurt's recommendation to
- # simply re-run configure here
- # edd 03 Apr 2010 added automake
- # nope, commented both out
- #automake
- #autoconf
-
- dh_testdir
- R_TEXI2DVICMD=emulation \
- R_PAPERSIZE=letter \
- R_BROWSER=xdg-open \
- R_GZIPCMD="/bin/gzip -n" \
- PAGER=/usr/bin/pager \
- PERL=/usr/bin/perl \
- JAVA_HOME=/usr/lib/jvm/default-java \
- R_UNZIPCMD=/usr/bin/unzip \
- R_ZIPCMD=/usr/bin/zip \
- R_PRINTCMD=/usr/bin/lpr \
- LIBnn=lib \
- AWK=/usr/bin/awk \
- CC=$(compiler) \
- CXX=${cxxcompiler} \
- ${fortrancompiler} \
- FC=${f95compiler} \
- CFLAGS="$(cflags)" \
- CXXFLAGS="$(cxxflags)" \
- FFLAGS="$(fcflags)" \
- FCFLAGS="$(fcflags)" \
- CPPFLAGS= \
- LDFLAGS="$(ldflags)" \
- FLIBS= \
- rsharedir=/usr/share/R/share \
- rincludedir=/usr/share/R/include \
- rdocdir=/usr/share/R/doc \
- ./configure --prefix=/usr \
- --with-cairo \
- --with-jpeglib \
- --with-readline \
- --with-tcltk \
- --with-system-bzlib \
- --with-system-pcre \
- --with-system-zlib \
- --mandir=/usr/share/man \
- --infodir=/usr/share/info \
- --datadir=/usr/share/R/share \
- --includedir=/usr/share/R/include \
- $(atlas) \
- $(lapack) \
- --enable-R-profiling \
- --enable-R-shlib \
- --enable-memory-profiling \
- --without-recommended-packages \
- --build $(buildarch)
-
- ## Old options now ignore: --with-pango, --with-png, --without-gnome
-
- touch configure-stamp
-
-make-arch: configure make-arch-stamp
-make-arch-stamp:
- @echo "*** make-arch ***"
- $(MAKE) CFLAGS="$(cflags)" \
- CXXFLAGS="$(cxxflags)" \
- FFLAGS="$(fcflags)" \
- FCFLAGS="$(fcflags)" \
- CC=${compiler} \
- CXX=${cxxcompiler} \
- ${fortrancompiler} \
- LDFLAGS="$(ldflags)" \
- PKG_BUILT_STAMP="$(buildtimestamp)" \
- R_GZIPCMD="/bin/gzip -n" \
- R
-
- # the top-level 'make stamp-recommended' target implies 'make docs'
- # which (for the buildds) implies a lot of time wasted generating
- # output we already take from the initial i386 build
-# $(MAKE) CFLAGS="$(compilerflags)" \
-# CXXFLAGS="$(compilerflags)" \
-# FFLAGS="$(compilerflags)" \
-# CC=${compiler} \
-# CXX=${cxxcompiler} \
-# ${fortrancompiler} \
-# stamp-recommended
-
- # make standalone math lib
- (cd src/nmath/standalone; \
- $(MAKE) CFLAGS="$(cflags) -D_REENTRANT" \
- CXXFLAGS="$(cxxflags) -D_REENTRANT" \
- FFLAGS="$(fcflags) -D_REENTRANT" \
- CC=${compiler} \
- CXX=${cxxcompiler} \
- ${fortrancompiler} \
- R_GZIPCMD="/bin/gzip -n" \
- libRmath_la_LDFLAGS=-Wl,-soname,libRmath.so.$(somaj) \
- shared static )
-
- # edd 25 Jan 2004 make install needs html docs
- # edd 03 Feb 2004 new test, try without
- #make docs
- # edd 15 Jan 2004 make install needs html docs
- # edd 25 Jan 2004 not needed as we have 'make docs'
- ## make html
- R_GZIPCMD="/bin/gzip -n" \
- $(MAKE) docs R_CMD_BUILD_HELP_OPTS="--txt --example"
-
- # edd 26 Mar 2013
- $(MAKE) javaconf
-
- touch make-arch-stamp
-
-make-indep: configure make-indep-stamp
-make-indep-stamp:
- @echo "*** make-indep ***"
- ## edd 12 Jan 2004 uncommenting 'make docs' to split binary all/any
- ## now that recommended packages aren't made
- ## edd 25 Jan 2004 make docs and make html are made in make-arch
- ## edd 05 Feb 2004 finally, this works in pre-1.9.0 with Kurt's
- ## R_CMD_BUILD_HELP_OPTS
- $(MAKE) -k docs
- (cd doc/manual && $(MAKE) html)
-# $(MAKE) html
-# $(MAKE) help
- $(MAKE) info
- (cd doc/manual && \
- $(MAKE) refman.pdf R-admin.pdf R-data.pdf R-exts.pdf \
- R-FAQ.pdf R-intro.pdf R-ints.pdf R-lang.pdf)
- $(MAKE) -k pdf
- $(MAKE) -k vignettes
- touch make-indep-stamp
-
-make: make-stamp
-make-stamp: make-arch make-indep
-
-#check: make-arch check-stamp
-check: make-stamp check-stamp
-check-stamp:
- @echo "*** check ***"
-#ifneq ($(arch),arm)
-## edd 11 Oct 2005 also disable on hppa
-## edd 15 Apr 2008 call inside of xvfb-run for virtual x11, and switch to check-all
-ifeq "$(findstring $(arch), hppa arm)" ""
-## edd 29 Jul 2013 also disable on kFreeBSD
-ifneq ($(buildos),kfreebsd)
- -xvfb-run make check-all
-endif
-endif
- touch check-stamp
-
-clean:
- @echo "*** clean ***"
- dh_testdir
- dh_testroot
- rm -f configure-stamp \
- build-stamp build-indep-stamp build-arch-stamp \
- make-stamp make-arch-stamp make-indep-stamp \
- install-indep-stamp install-arch-stamp \
- check-stamp
- [ ! -f Makefile ] || $(MAKE) distclean
- -rm -f `find . -name "*~"`
- -rm -rf debian/tmp debian/files* core debian/substvars
- -rm -f doc/html/function.html doc/html/packages.html
- -rm -f modules/*.so src/unix/Rscript
- # left over in CVS from r-base --> r-base-core transition
- #(cd debian; rm -vf r-base.dirs r-base.files r-base.lintian \
- # r-base.menu r-base.postinst)
- dh_clean
-
-install: install-arch install-indep
-
-install-arch: build-arch install-arch-stamp
-install-arch-stamp:
- @echo "*** install-arch ***"
- dh_testdir
- dh_testroot
- dh_prep -a
- dh_installdirs -A
- @echo $(debtmp)
-
- $(MAKE) DESTDIR=$(debtmp) install
-
- # edd 16 Apr 2008 make Rscript _again_ as the build is broken
- # and we need an explicit RHOME
- (cd src/unix; \
- rm -vf Rscript $(debtmp)/usr/bin/Rscript; \
- $(MAKE) CFLAGS="$(cflags) -D_REENTRANT" \
- CXXFLAGS="$(cxxflags) -D_REENTRANT" \
- FFLAGS="$(fcflags) -D_REENTRANT" \
- CC=${compiler} \
- CXX=${cxxcompiler} \
- ${fortrancompiler} \
- RHOME=/usr/lib/R \
- DESTDIR=$(debtmp) \
- install-Rscript )
- #ls -ltr $(debtmp)/usr/bin/
- #strings src/unix/Rscript
- cp -vax src/unix/Rscript $(debtmp)/usr/bin/
- #ls -ltr $(debtmp)/usr/bin/
- #strings $(debtmp)/usr/bin/Rscript
-
- (cd src/nmath/standalone; \
- $(MAKE) DESTDIR=$(debtmp) install )
-
- # fix permissions (Lintian)
- # edd 15 Jan 2006 now under /usr/share/R
- # edd 13 Oct 2009 no longer have help-{links,print}.sh
- chmod a+x $(debtmp)/usr/share/R/share/sh/echo.sh
-# $(debtmp)/usr/share/R/share/sh/help-links.sh \
-# $(debtmp)/usr/share/R/share/sh/help-print.sh
-
- # remove unneeded license file, but link them back
- rm -v $(debtmp)/usr/lib/R/COPYING
- (cd $(debtmp)/usr/lib/R/; \
- ln -s ../../share/common-licenses/GPL-2 COPYING)
- rm -v $(debtmp)/usr/share/R/doc/COPYING
- (cd $(debtmp)/usr/share/R/doc; \
- ln -s ../../../share/common-licenses/GPL-2 COPYING)
-
- # edd 15 Jul 2002 reduce compile load on small machines
-#ifneq "$(findstring $(arch), m68k arm)" ""
-# perl -p -i -e 's/-g -O2/-g0 -O0/g' $(debtmp)/usr/lib/R/etc/Makeconf
-#endif
-
- # edd 10 Jan 2003 fix Perl interpreter path
- # edd 05 May 2005 no longer needed
-# (cd $(debtmp)/usr/lib/R/bin; \
-# for file in Rdconv Rprof Sd2Rd build check; do \
-# perl -p -i -e "s|/usr/local/bin/perl|/usr/bin/perl|" \
-# $${file}; \
-# done)
-
- # edd 25 Sep 2005 link TeX files into texmf
- # edd 03 Oct 2006 use link into /usr/share/, not /usr/lib/
- (cd $(debtmp)/usr/share/texmf/tex/latex && \
- ln -s ../../../R/share/texmf R)
-
- # that being done, now install in different sub-packages
-
- # move files for r-recommended
-
- # move the html manual files in r-doc-html.files into r-doc-html
- # these get built in make-arch too ...
- dh_movefiles --sourcedir=debian/$(corepackage) -p$(htmlpackage)
-
- # move files for r-base-html
- dh_movefiles --sourcedir=debian/$(corepackage) -pr-base-html
- # move files for r-base-latex
- dh_movefiles --sourcedir=debian/$(corepackage) -pr-base-latex
-
- make prefix=$(debtmp)/usr \
- rdocdir=$(debtmp)/usr/share/R/doc \
- install-pdf
-
- # the indep package r-doc-info is made now
- make prefix=$(debtmp)/usr \
- infodir=$(debtmp)/usr/share/info install-info
-
- # move the pdf manual files listed in r-doc-pdf.files into r-doc-pdf
- dh_movefiles --sourcedir=debian/$(corepackage) -p$(pdfpackage)
-
- # move the html manual files in r-doc-html.files into r-doc-html
- dh_movefiles --sourcedir=debian/$(corepackage) -p$(htmlpackage)
-
- touch install-indep-stamp
- # edd 06 Dec 2006 lintian wants them compressed with -9, and R
- # seems to pre-zip them lower
- gunzip -9v $(debtmp)/usr/share/info/*.gz
- # move files for r-doc-info
- dh_movefiles --sourcedir=debian/$(corepackage) -p$(infopackage)
- # deal with stupid automake / install-info issue (cf #235713)
- rm -vf $(debinf)/usr/share/info/dir \
- $(debinf)/usr/share/info/dir.old
-
- # move all the rest into r-base-core
- # edd 10 Sep 2005 no longer needed as we install into r-base-core
- # dh_movefiles -p$(corepackage)
-
- # for the standalone library package, move the two libs
- # as 'make install' ignores these, we have to do it by hand
- dh_installdirs -p$(nmathpackage) usr/include usr/lib \
- usr/share/lintian/overrides \
- usr/lib/pkgconfig
- # move the libraries made and installed by R, and the pkgconfig file
- dh_movefiles --sourcedir=debian/$(corepackage) -p$(nmathpackage)
- # move the library to a lib*.so.major.0.0, then link
- (cd $(debmat)/usr/lib; \
- ls -l ; \
- mv -v libRmath.so libRmath.so.$(libver); \
- ln -sv libRmath.so.$(libver) libRmath.so.$(somaj); \
- ln -sv libRmath.so.$(somaj) libRmath.so)
-
- # and create a link for Rmath.h
- # rather copy directly into the more independent package r-mathlib
- install -m 0644 src/include/Rmath.h \
- $(debmat)/usr/include
-
- # now deal with $R_HOME/etc <--> /etc/R
- # edd 03 Apr 2003 patch Renviron for new R_LIBS standard
- # edd 24 Apr 2004 patch Renviron for R_PAPERSIZE (bug #245525)
- # edd 16 Jun 2004 nope, doesn't work
- # edd 09 Apr 2005 also move the new file repositories to /etc/R
- # edd 24 Sep 2006 idem for ldpaths
- # edd 21 Jun 2008 do not move Renviron to /etc/R as ucf will handle this,
- # but still provide the softlink from /etc/R here
- # edd 13 Sep 2008 install Rprofile.site and Renviron.site and link back
- install -m 0644 debian/Rprofile.site $(debcnf)
- install -m 0644 debian/Renviron.site $(debcnf)
- (cd $(debetc); \
- cat $(debbase)/Renviron-R_LIBS.patch | patch --verbose; \
- mv Makeconf repositories ldpaths ../../../../etc/R/; \
- mv Renviron Renviron.ucf; \
- ln -s /etc/R/Makeconf .; \
- ln -s /etc/R/Renviron .; \
- ln -s /etc/R/Renviron.site .; \
- ln -s /etc/R/Rprofile.site .; \
- ln -s /etc/R/ldpaths .; \
- ln -s /etc/R/repositories . )
-# cat $(debbase)/Renviron-R_PAPERSIZE.patch | patch --verbose;
-
- # deal with build.help.pl's --htmllists argument
- # edd 29 Jan 2009 Not needed as of R 2.9.0
- #(cd $(debtmp)/usr/share/R/share/perl; \
- # cat $(debbase)/build-help.pl.patch | patch --verbose )
-
- # edd 28 Sep 2006 patch javareconf to modify in /etc/R
- # edd 24 Feb 2013 disabled for R 2.15.3
- #(cd $(debtmp)/usr/lib/R/bin; \
- # cat $(debbase)/javareconf.patch | patch --verbose )
-
- # edd 24 Jan 2006 deal with old postinst/postrm scripts
- # calling the old /usr/lib/R/share/perl path
- #(cd $(debtmp)/usr/lib/R && ln -s ../../share/R/share . )
- # edd 06 Feb 2006 softlink fails with upgrades from older versions
- # edd 29 Jan 2009 Not needed as of R 2.9.0
- # dh_installdirs -p$(corepackage) usr/lib/R/share/perl
- # install -m 0644 debian/build-help.pl \
- # debian/$(corepackage)/usr/lib/R/share/perl/
-
- # add tab completion by Deepayan
- #install -m 0644 debian/R.bash_completion \
- # debian/$(corepackage)/etc/bash_completion.d/R
- # edd 24 Mar 2014 now installs via dh_bash-completion
- dh_bash-completion
- # edd 12 Jan 2016 new location
- #install -m 0644 debian/R.bash-completion \
- # debian/$(corepackage)/usr/share/bash-completion/completions/R
-
- # edd 02 May 2007 add libR.conf for ld.so
- # edd 13 Sep 2009 no more under Policy 3.8.3
-# install -m 0644 debian/libR.conf \
-# debian/$(corepackage)/etc/ld.so.conf.d/libR.conf
- # edd 03 Apr 2010 add a link from usr/lib
- (cd $(debtmp)/usr/lib/; \
- ln -sv R/lib/libR.so . )
-
- # edd 21 Jun 2012 add icon and desktop file from Philip Johnson's patch
- (cd debian/icon-class-patch && munpack rlogo_icon.png.mpack)
- install -m 0644 debian/icon-class-patch/rlogo_icon.png \
- debian/$(corepackage)/usr/share/icons/hicolor/48x48/apps
- install -m 0644 debian/icon-class-patch/R.desktop \
- debian/$(corepackage)/usr/share/applications
- rm debian/icon-class-patch/rlogo_icon.png
-
- touch install-arch-stamp
-
-#install-indep: make-arch make-indep install-arch install-indep-stamp
-install-indep: make-indep install-indep-stamp
-install-indep-stamp:
- @echo "*** install-indep ***"
- dh_testdir
- dh_testroot
- dh_prep -a
- dh_installdirs -A
-
-# make prefix=$(debtmp)/usr install-pdf
-#
-# # the indep package r-doc-info is made now
-# make prefix=$(debtmp)/usr \
-# infodir=$(debtmp)/usr/share/info install-info
-#
-# # move the pdf manual files listed in r-doc-pdf.files into r-doc-pdf
-# dh_movefiles -p$(pdfpackage)
-# # move the html manual files in r-doc-html.files into r-doc-html
-# dh_movefiles -p$(htmlpackage)
-# touch install-indep-stamp
-# # move files for r-doc-info
-# dh_movefiles -p$(infopackage)
-
- # but clean up dir and old.dir
- rm -vf $(debbase)/$(infopackage)/usr/share/info/dir \
- $(debbase)/$(infopackage)/usr/share/info/dir.old
-
- touch install-indep-stamp
-
-
-# Build architecture-independent files here.
-# edd 5 Feb 2004 binary-indep: build-indep install-indep
-binary-indep: build-indep install-indep
- @echo "*** binary-indep ***"
- dh_testdir -i
- dh_testroot -i
- dh_link -i
- #dh_installdebconf -i
- dh_installdocs -i
- dh_installdocs -v -p$(htmlpackage)
- #dh_installexamples -i
- #dh_installmenu -i
- #dh_installemacsen -i
- #dh_installpam -i
- #dh_installmime -i
- #dh_installinit -i
- #dh_installcron -i
- #dh_installmanpages -i
- #dh_installinfo -i
- #dh_undocumented -i
- dh_installchangelogs -i
- # install lintian "silencer"
- # edd 13 Oct 2009 this package is no longer needed / created
-# install -p -m 0644 debian/$(latexpackage).lintian $(debbase)/$(latexpackage)/usr/share/lintian/overrides/$(latexpackage)
-
- dh_installdirs -p$(devpackage) usr/share/R/debian
- install -p -m 0755 debian/r-cran.mk \
- $(debbase)/$(devpackage)/usr/share/R/debian
-
- dh_compress -i
- dh_fixperms -i
- #dh_suidregister -i
- dh_installdeb -i
- #dh_perl -i
- dh_gencontrol -i
- dh_md5sums -i
- dh_builddeb -i
-
-# Build architecture-dependent files here.
-binary-arch: build-arch install-arch
- @echo "*** binary-arch ***"
- dh_testdir -a
- dh_testroot -a
- #dh_installdebconf -a
- # edd 04 Apr 2006 AUTHORS RESOURCES THANKS Y2K FAQ all gone
- dh_installdocs -p$(corepackage) doc/NEWS.* README \
- debian/README.Atlas \
- debian/README.mathlib
- dh_installdocs -p$(nmathpackage) doc/NEWS.* README \
- debian/README.mathlib
- dh_installdocs -p$(dbugpackage)
- #dh_installexamples -a
- #dh_installexamples -p$(corepackage) src/nmath/standalone/test.c
- dh_installexamples -p$(nmathpackage) src/nmath/standalone/test.c
- #dh_installmenu -a
- #dh_installemacsen -a
- #dh_installpam -a
- #dh_installmime -a
- #dh_installinit -a
- #dh_installcron -a
- #dh_installmanpages -a -p$(corepackage) getline.3
- #dh_installman -p$(corepackage) doc/R.1
- ## dh_installinfo -a -n doc/manual/R-*.info*
- ## edd 04 Apr 2004 manual is dangling unless r-doc-pdf is installed ...
- ##(cd $(debdoc)/doc && ln -s ../../../../lib/R/doc/html .)
- ##(cd $(debdoc)/doc && ln -s ../../../../lib/R/doc/manual .)
- # ... so install doc as a link, as we already did with library
- # (cd $(debdoc) && ln -s ../../../lib/R/doc .)
- (cd $(debdoc) && ln -s ../../R/doc .)
- (cd $(debdoc) && ln -s ../../../lib/R/library .)
- # install lintian "silencer"
- install -p -m 0644 debian/$(corepackage).lintian \
- $(debbase)/$(corepackage)/usr/share/lintian/overrides/$(corepackage)
- install -p -m 0644 debian/$(recdpackage).lintian \
- $(debbase)/$(recdpackage)/usr/share/lintian/overrides/$(recdpackage)
- install -p -m 0644 debian/$(nmathpackage).lintian \
- $(debbase)/$(nmathpackage)/usr/share/lintian/overrides/$(nmathpackage)
-# install -p -m 0644 debian/$(dbugpackage).lintian \
-# $(debbase)/$(dbugpackage)/usr/share/lintian/overrides/$(dbugpackage)
- #dh_undocumented -a
- dh_installchangelogs -a -k doc/NEWS
-# dh_strip -a
- dh_strip --sourcedir=$(debtmp) --dbg-package=r-base-core-dbg
- dh_strip --sourcedir=$(debmat)
- dh_compress -a
- dh_fixperms -a
- #dh_suidregister -a
- dh_link -a
- dh_makeshlibs -a
- dh_installdeb -a
- dh_perl -a
- dh_shlibdeps -a -l $(debbase)/$(corepackage)/usr/lib/R/lib
-# @echo "*** Pruning shlibdeps result from double atlas entry ***"
-# cat debian/r-base-core.substvars
-# perl -p -i -e 's/atlas2-base, //' debian/r-base-core.substvars
-# cat debian/r-base-core.substvars
-# @echo "*** Pruning atlas from r-recommended shlibdeps ***"
-# cat debian/r-recommended.substvars
-# perl -p -i -e 's/atlas2-base, //' debian/r-recommended.substvars
-# cat debian/r-recommended.substvars
-# echo "*** Done ***"
- dh_gencontrol -a
- dh_md5sums -a
- dh_builddeb -a
-
-#binary: binary-indep binary-arch install-arch install-indep
-binary: make-stamp check binary-arch binary-indep
-
-.PHONY: build clean binary-indep binary-arch binary install install-arch install-indep
diff --git a/debian/rules,v b/debian/rules,v
deleted file mode 100644
index 6006c5f..0000000
--- a/debian/rules,v
+++ /dev/null
@@ -1,758 +0,0 @@
-head 1.3;
-access;
-symbols;
-locks
- edd:1.3; strict;
-comment @# @;
-
-
-1.3
-date 2007.05.06.17.13.23; author edd; state Exp;
-branches;
-next 1.2;
-
-1.2
-date 2007.05.06.17.06.12; author edd; state Exp;
-branches;
-next 1.1;
-
-1.1
-date 2007.05.06.17.03.31; author edd; state Exp;
-branches;
-next ;
-
-
-desc
-@@
-
-
-1.3
-log
- at lots of cleanup
-@
-text
-@#!/usr/bin/make -f
-# debian/rules file for the Debian GNU/Linux r-base package
-# Copyright 1997-2007 by Douglas Bates <bates@@stat.wisc.edu>
-# and Dirk Eddelbuettel <edd@@debian.org>
-#
-# $Id: rules,v 1.2 2007/05/06 17:06:12 edd Exp edd $
-
-corepackage = r-base-core
-devpackage = r-base-dev
-latexpackage = r-base-latex
-pdfpackage = r-doc-pdf
-htmlpackage = r-doc-html
-nmathpackage = r-mathlib
-infopackage = r-doc-info
-recdpackage = r-recommended
-
-# for the standalone library, no sonames are assigned in the upstream Makefiles
-somaj = 1
-somin = 0
-sorel = 0
-libver = $(somaj).$(somin).$(sorel)
-
-debbase := $(CURDIR)/debian
-debtmp := $(debbase)/$(corepackage)
-debdoc := $(debbase)/$(corepackage)/usr/share/doc/$(corepackage)
-debmat := $(debbase)/$(nmathpackage)
-debetc := $(debbase)/$(corepackage)/usr/lib/R/etc
-debinf := $(debbase)/$(infopackage)
-
-## edd 24 Oct 2005 use DEB_BUILD_GNU_CPU, not DEB_BUILD_GNU_TYPE
-## updated rules throughout
-arch := $(shell dpkg-architecture -qDEB_BUILD_GNU_CPU)
-buildarch := $(shell dpkg-architecture -qDEB_BUILD_GNU_TYPE)
-
-#export DH_VERBOSE = 1
-
-# edd 15 Aug 2001 default to blas, atlas can override it
-#atlas = --with-blas=blas
-# dmb 04 Apr 2003 better to use no specify blas
-# atlas = --with-blas
-# edd 28 Apr 2003 try configuring with atlas
-# atlas = --with-blas=atlas
-# edd 16 Oct 2003 back to older default
-#atlas = --with-blas=blas
-# edd 26 Feb 2004 point to refblas3
-atlas = --with-blas=-lblas-3
-
-# edd 08 Mar 2003 use the new lapack feature
-# edd 27 Apr 2003 Set this to =no as we currently see numerical errors
-#lapack = --with-lapack=no
-# edd 26 Feb 2004 point to lapack3
-#lapack = --with-lapack=-llapack-3
-# edd 13 Oct 2004 Set this once again to =no as we still see numerical errors
-lapack = --with-lapack=no
-
-# edd 02 Sep 2001 default to g77 but let m68k use f2c
-# edd 06 Mar 2003 enforce 3.2 versions explicitly
-# so that on testing we will pick them over 2.95
-# edd 07 Jun 2003 let's fall back to the default compilers
-# edd 08 Sep 2005 real defaults, i.e. remove -3.4 strings
-# edd 03 Apr 2006 switch to gfortran
-# edd 04 Apr 2006 use optimflags, build per-compiler flags later
-fortrancompiler = F77=gfortran
-compiler = gcc
-cxxcompiler = g++
-optimflags = -O3 -pipe
-
-# edd 04 Sep 2001 default compiler flags, lowered for m68k
-#compilerflags = -O2
-# m68k barks when using g77, and when gcc use -O2
-# edd 26 Nov 2002 switched back to g77
-# edd 02 Jun 2003 switched back
-# cts 04 Jun 2003 use -O1 on m68k
-#ifeq ($(arch),m68k)
-#fortrancompiler = F2C=f2c
-#compilerflags = -O1
-#endif
-
-# edd 14 Nov 2003 turn blas off on arm
-ifeq ($(arch),arm)
-atlas = --without-blas
-endif
-
-## edd 09 Nov 2001 ia64 needs gcc-3.0, hppa gets it by default
-#ifeq ($(arch),ia64)
-#fortrancompiler = F77=g77-3.0
-#compiler = gcc-3.0
-#cxxcompiler = g++-3.0
-#compilerflags = -O2
-#endif
-
-## lamont@@debian.org 06 Dec 2001 hppa needs -ffunction-sections
-ifeq ($(arch),hppa)
-optimflags = -O2 -ffunction-sections
-endif
-
-## edd 20 Jun 2002 no optimisation or debugging on baby systems
-## edd 02 Jun 2003 use this on arm only
-#ifneq "$(findstring $(arch), m68k arm)" ""
-ifneq "$(findstring $(arch), arm)" ""
-optimflags = -O0 -g0
-endif
-
-## edd 09 Apr 2006 per patch from Andreas Jochens in #361604
-ifeq ($(arch),powerpc64)
-optimflags += -mminimal-toc
-endif
-
-## edd 04 Apr 2006 generalize from old compilerflags to per-compiler
-cflags = -std=gnu99 $(optimflags)
-cxxflags = $(optimflags)
-fcflags = $(optimflags)
-
-## edd 17 Sep 2006 suggested by Brian Ripley in email dated 15 Sep 2006
-#ldflags = -Wl,-O1,-Bdirect,--hash-style=both
-# old call: ldflags = -Wl,-O1
-## edd 06 May 2007 try it
-ldflags = -Wl,-O1,-Bdirect,--hash-style=both
-
-maketest:
- @@echo "Hi $(arch)"
- @@echo "$(findstring $(arch), i486 hppa arm)"
-ifeq "$(findstring $(arch), hppa arm)" ""
- @@echo "**** TRUE if the arch is NOT in the list as !find == '' ***"
-endif
-ifneq "$(findstring $(arch), i486 hppa arm)" ""
- @@echo "**** TRUE if the arch is in list as find != '' is TRUE ***"
-endif
- @@echo Bye
-
-get-orig-source: upstream
-upstream:
- #links http://cran.us.r-project.org/src/base
- links http://cran.r-project.org/src/base/?M=D
-
-upstreamdevel:
- links ftp://ftp.stat.math.ethz.ch/Software/R
- #links http://cran.us.r-project.org/src/base
- #rsync -vaC rsync.r-project.org::r-devel .
-
-prerelease:
- links http://cran.r-project.org/src/base-prerelease
-
-
-## edd 24 Oct 2003 build is invoked by the buildd, so we would prefer to
-## not imply build-indep; unfortunately R does not build
-## properly without it, so we have to stick with it
-## edd 15 Jan 2004 trying again on build only build: build-arch build-indep
-## the main hook is to then have binary depend on both
-## binary-arch and binary-indep, and those on their builds
-build: build-arch
-
-build-arch: make-arch
-
-build-indep: make-indep
-
-configure: configure-stamp
-configure-stamp:
- @@echo "*** configure ***"
-
- # we have to disable use of the expanded R_LD_LIBRARY_PATH as it
- # conflicts with Debian's Atlas-can-replace-Blas scheme
- # so set R_LD_LIBRARY_PATH to the minimal value R_HOME/bin
- # and discard what configure finds for it on this machine
- ## edd 06 May 2007 no longer used in R.sh.in
- #perl -p -i -e 's|:\@@R_LD_LIBRARY_PATH\@@||' src/scripts/R.sh.in
-
- dh_testdir
- R_PAPERSIZE=letter \
- R_BROWSER=sensible-browser \
- PAGER=/usr/bin/pager \
- PERL=/usr/bin/perl \
- R_UNZIPCMD=/usr/bin/unzip \
- R_ZIPCMD=/usr/bin/zip \
- R_PRINTCMD=/usr/bin/lpr \
- LIBnn=lib \
- AWK=/usr/bin/awk \
- CC=${compiler} \
- CXX=${cxxcompiler} \
- ${fortrancompiler} \
- CPPFLAGS= \
- LDFLAGS= \
- FLIBS= \
- rsharedir=/usr/share/R/share \
- rincludedir=/usr/share/R/include \
- rdocdir=/usr/share/R/doc \
- ./configure --prefix=/usr \
- --with-system-bzlib \
- --with-jpeg \
- --with-system-pcre \
- --with-png \
- --with-readline \
- --with-tcltk \
- --with-system-zlib \
- --mandir=/usr/share/man \
- --infodir=/usr/share/info \
- --datadir=/usr/share/R/share \
- --includedir=/usr/share/R/include \
- $(atlas) \
- $(lapack) \
- --without-gnome \
- --enable-R-profiling \
- --enable-R-shlib \
- --enable-memory-profiling \
- --without-recommended-packages \
- --build $(buildarch)
-
- touch configure-stamp
-
-make-arch: configure make-arch-stamp
-make-arch-stamp:
- @@echo "*** make-arch ***"
- $(MAKE) CFLAGS="$(cflags)" \
- CXXFLAGS="$(cxxflags)" \
- FFLAGS="$(fcflags)" \
- CC=${compiler} \
- CXX=${cxxcompiler} \
- ${fortrancompiler} \
- LDFLAGS="$(ldflags)" \
- R
-
- # the top-level 'make stamp-recommended' target implies 'make docs'
- # which (for the buildds) implies a lot of time wasted generating
- # output we already take from the initial i386 build
-# $(MAKE) CFLAGS="$(compilerflags)" \
-# CXXFLAGS="$(compilerflags)" \
-# FFLAGS="$(compilerflags)" \
-# CC=${compiler} \
-# CXX=${cxxcompiler} \
-# ${fortrancompiler} \
-# stamp-recommended
-
- # make standalone math lib
- (cd src/nmath/standalone; \
- $(MAKE) CFLAGS="$(cflags) -D_REENTRANT" \
- CXXFLAGS="$(cxxflags) -D_REENTRANT" \
- FFLAGS="$(fcflags) -D_REENTRANT" \
- CC=${compiler} \
- CXX=${cxxcompiler} \
- ${fortrancompiler} \
- all )
-
- # edd 25 Jan 2004 make install needs html docs
- # edd 03 Feb 2004 new test, try without
- #make docs
- # edd 15 Jan 2004 make install needs html docs
- # edd 25 Jan 2004 not needed as we have 'make docs'
- ## make html
- $(MAKE) docs R_CMD_BUILD_HELP_OPTS="--txt --example"
-
- touch make-arch-stamp
-
-make-indep: configure make-indep-stamp
-make-indep-stamp:
- @@echo "*** make-indep ***"
- ## edd 12 Jan 2004 uncommenting 'make docs' to split binary all/any
- ## now that recommended packages aren't made
- ## edd 25 Jan 2004 make docs and make html are made in make-arch
- ## edd 05 Feb 2004 finally, this works in pre-1.9.0 with Kurt's
- ## R_CMD_BUILD_HELP_OPTS
- $(MAKE) docs
- $(MAKE) html
- $(MAKE) help
- $(MAKE) info
- $(MAKE) pdf
- touch make-indep-stamp
-
-make: make-stamp
-make-stamp: make-arch make-indep
-
-check: make-arch check-stamp
-check-stamp:
- @@echo "*** check ***"
-#ifneq ($(arch),arm)
-## edd 11 Oct 2005 also disable on hppa
-ifeq "$(findstring $(arch), hppa arm)" ""
- -make check
-endif
- touch check-stamp
-
-clean:
- @@echo "*** clean ***"
- dh_testdir
- dh_testroot
- rm -f configure-stamp \
- build-stamp build-indep-stamp build-arch-stamp \
- make-stamp make-arch-stamp make-indep-stamp \
- install-indep-stamp install-arch-stamp \
- check-stamp
- -$(MAKE) distclean
- -rm -f `find . -name "*~"`
- -rm -rf debian/tmp debian/files* core debian/substvars
- -rm -f doc/html/function.html doc/html/packages.html
- -rm -f modules/*.so src/unix/Rscript
- # left over in CVS from r-base --> r-base-core transition
- #(cd debian; rm -vf r-base.dirs r-base.files r-base.lintian \
- # r-base.menu r-base.postinst)
- dh_clean
-
-install: install-arch install-indep
-
-install-arch: make-arch check install-arch-stamp
-install-arch-stamp:
- @@echo "*** install-arch ***"
- dh_testdir
- dh_testroot
- dh_clean -a -k
- dh_installdirs -A
- @@echo $(debtmp)
-
- $(MAKE) DESTDIR=$(debtmp) install
-
- (cd src/nmath/standalone; \
- $(MAKE) DESTDIR=$(debtmp) install )
-
- # fix permissions (Lintian)
- # edd 15 Jan 2006 now under /usr/share/R
- # edd 06 May 2007 seems this is no longer needed either
-# chmod a+x $(debtmp)/usr/share/R/share/sh/echo.sh \
-# $(debtmp)/usr/share/R/share/sh/help-links.sh \
-# $(debtmp)/usr/share/R/share/sh/help-print.sh
-
- # remove unneeded license file, but link them back
- rm -v $(debtmp)/usr/lib/R/COPYING
- (cd $(debtmp)/usr/lib/R/; \
- ln -s ../../share/common-licenses/GPL COPYING)
- rm -v $(debtmp)/usr/share/R/doc/COPYING \
- $(debtmp)/usr/share/R/doc/COPYING.LIB
- (cd $(debtmp)/usr/share/R/doc; \
- ln -s ../../../share/common-licenses/GPL COPYING; \
- ln -s ../../../share/common-licenses/LGPL COPYING.LIB )
-
- # edd 15 Jul 2002 reduce compile load on small machines
-#ifneq "$(findstring $(arch), m68k arm)" ""
-# perl -p -i -e 's/-g -O2/-g0 -O0/g' $(debtmp)/usr/lib/R/etc/Makeconf
-#endif
-
- # edd 10 Jan 2003 fix Perl interpreter path
- # edd 05 May 2005 no longer needed
-# (cd $(debtmp)/usr/lib/R/bin; \
-# for file in Rdconv Rprof Sd2Rd build check; do \
-# perl -p -i -e "s|/usr/local/bin/perl|/usr/bin/perl|" \
-# $${file}; \
-# done)
-
- # edd 25 Sep 2005 link TeX files into texmf
- # edd 03 Oct 2006 use link into /usr/share/, not /usr/lib/
- (cd $(debtmp)/usr/share/texmf/tex/latex && \
- ln -s ../../../R/share/texmf R)
-
- # that being done, now install in different sub-packages
-
- # move files for r-recommended
-
- # move the html manual files in r-doc-html.files into r-doc-html
- # these get built in make-arch too ...
- dh_movefiles --sourcedir=debian/$(corepackage) -p$(htmlpackage)
-
- # move files for r-base-html
- dh_movefiles --sourcedir=debian/$(corepackage) -pr-base-html
- # move files for r-base-latex
- dh_movefiles --sourcedir=debian/$(corepackage) -pr-base-latex
-
- make prefix=$(debtmp)/usr \
- rdocdir=$(debtmp)/usr/share/R/doc \
- install-pdf
-
- # the indep package r-doc-info is made now
- make prefix=$(debtmp)/usr \
- infodir=$(debtmp)/usr/share/info install-info
-
- # move the pdf manual files listed in r-doc-pdf.files into r-doc-pdf
- dh_movefiles --sourcedir=debian/$(corepackage) -p$(pdfpackage)
-
- # move the html manual files in r-doc-html.files into r-doc-html
- dh_movefiles --sourcedir=debian/$(corepackage) -p$(htmlpackage)
-
- touch install-indep-stamp
- # edd 06 Dec 2006 lintian wants them compressed with -9, and R
- # seems to pre-zip them lower
- gunzip -9v $(debtmp)/usr/share/info/*.gz
- # move files for r-doc-info
- dh_movefiles --sourcedir=debian/$(corepackage) -p$(infopackage)
- # deal with stupid automake / install-info issue (cf #235713)
- rm -vf $(debinf)/usr/share/info/dir \
- $(debinf)/usr/share/info/dir.old
-
- # move all the rest into r-base-core
- # edd 10 Sep 2005 no longer needed as we install into r-base-core
- # dh_movefiles -p$(corepackage)
-
- # for the standalone library package, move the two libs
- # as 'make install' ignores these, we have to do it by hand
- dh_installdirs -p$(nmathpackage) usr/include usr/lib \
- usr/share/lintian/overrides \
- usr/lib/pkgconfig
- # move the libraries made and installed by R, and the pkgconfig file
- dh_movefiles --sourcedir=debian/$(corepackage) -p$(nmathpackage)
- # move the library to a lib*.so.major.0.0, then link
- (cd $(debmat)/usr/lib; \
- mv -v libRmath.so libRmath.so.$(libver); \
- ln -sv libRmath.so.$(libver) libRmath.so.$(somaj); \
- ln -sv libRmath.so.$(somaj) libRmath.so)
- # and create a link for Rmath.h
- # rather copy directly into the more independent package r-mathlib
- install -m 0644 src/include/Rmath.h \
- $(debmat)/usr/include
-
- # now deal with $R_HOME/etc <--> /etc/R
- # edd 03 Apr 2003 patch Renviron for new R_LIBS standard
- # edd 24 Apr 2004 patch Renviron for R_PAPERSIZE (bug #245525)
- # edd 16 Jun 2004 nope, doesn't work
- # edd 09 Apr 2005 also move the new file repositories to /etc/R
- # edd 24 Sep 2006 idem for ldpaths
- (cd $(debetc); \
- cat $(debbase)/Renviron-R_LIBS.patch | patch --verbose; \
- mv Makeconf Renviron repositories ldpaths \
- ../../../../etc/R/; \
- ln -s /etc/R/Makeconf .; \
- ln -s /etc/R/Renviron .; \
- ln -s /etc/R/ldpaths .; \
- ln -s /etc/R/repositories . )
-# cat $(debbase)/Renviron-R_PAPERSIZE.patch | patch --verbose;
-
- # deal with build.help.pl's --htmllists argument
- (cd $(debtmp)/usr/share/R/share/perl; \
- cat $(debbase)/build-help.pl.patch | patch --verbose )
-
- # edd 28 Sep 2006 patch javareconf to modify in /etc/R
- (cd $(debtmp)/usr/lib/R/bin; \
- cat $(debbase)/javareconf.patch | patch --verbose )
-
- # edd 24 Jan 2006 deal with old postinst/postrm scripts
- # calling the old /usr/lib/R/share/perl path
- #(cd $(debtmp)/usr/lib/R && ln -s ../../share/R/share . )
- # edd 06 Feb 2006 softlink fails with upgrades from older versions
- dh_installdirs -p$(corepackage) usr/lib/R/share/perl
- install -m 0644 debian/build-help.pl \
- debian/$(corepackage)/usr/lib/R/share/perl/
-
- # add tab completion by Deepayan
- install -m 0644 debian/R.bash_completion \
- debian/$(corepackage)/etc/bash_completion.d/R
-
- # edd 02 May 2007 add libR.conf for ld.so
- install -m 0644 debian/libR.conf \
- debian/$(corepackage)/etc/ld.so.conf.d/libR.conf
-
- touch install-arch-stamp
-
-#install-indep: make-arch make-indep install-arch install-indep-stamp
-install-indep: make-indep install-indep-stamp
-install-indep-stamp:
- @@echo "*** install-indep ***"
- dh_testdir
- dh_testroot
- dh_clean -a -k
- dh_installdirs -A
-
-# make prefix=$(debtmp)/usr install-pdf
-#
-# # the indep package r-doc-info is made now
-# make prefix=$(debtmp)/usr \
-# infodir=$(debtmp)/usr/share/info install-info
-#
-# # move the pdf manual files listed in r-doc-pdf.files into r-doc-pdf
-# dh_movefiles -p$(pdfpackage)
-# # move the html manual files in r-doc-html.files into r-doc-html
-# dh_movefiles -p$(htmlpackage)
-# touch install-indep-stamp
-# # move files for r-doc-info
-# dh_movefiles -p$(infopackage)
-
- # but clean up dir and old.dir
- rm -vf $(debbase)/$(infopackage)/usr/share/info/dir \
- $(debbase)/$(infopackage)/usr/share/info/dir.old
-
- touch install-indep-stamp
-
-
-# Build architecture-independent files here.
-# edd 5 Feb 2004 binary-indep: build-indep install-indep
-binary-indep: build-indep install-indep
- @@echo "*** binary-indep ***"
- dh_testdir -i
- dh_testroot -i
- dh_link -i
- #dh_installdebconf -i
- dh_installdocs -i
- #dh_installexamples -i
- #dh_installmenu -i
- #dh_installemacsen -i
- #dh_installpam -i
- #dh_installmime -i
- #dh_installinit -i
- #dh_installcron -i
- #dh_installmanpages -i
- #dh_installinfo -i
- #dh_undocumented -i
- dh_installchangelogs -i
- # install lintian "silencer"
- install -p -m 0644 debian/$(latexpackage).lintian \
- $(debbase)/$(latexpackage)/usr/share/lintian/overrides/$(latexpackage)
-
- dh_installdirs -p$(devpackage) usr/share/R/debian
- install -p -m 0755 debian/r-cran.mk \
- $(debbase)/$(devpackage)/usr/share/R/debian
-
- dh_compress -i
- dh_fixperms -i
- #dh_suidregister -i
- dh_installdeb -i
- #dh_perl -i
- dh_gencontrol -i
- dh_md5sums -i -X'usr/bin/R'
- dh_builddeb -i
-
-# Build architecture-dependent files here.
-binary-arch: build-arch check install-arch
- @@echo "*** binary-arch ***"
- dh_testdir -a
- dh_testroot -a
- #dh_installdebconf -a
- #dh_link -a
- # edd 04 Apr 2006 AUTHORS RESOURCES THANKS Y2K FAQ all gone
- dh_installdocs -p$(corepackage) NEWS ONEWS OONEWS README \
- debian/README.Atlas \
- debian/README.mathlib
- dh_installdocs -p$(nmathpackage) NEWS ONEWS OONEWS README \
- debian/README.mathlib
- #dh_installexamples -a
- #dh_installexamples -p$(corepackage) src/nmath/standalone/test.c
- dh_installexamples -p$(nmathpackage) src/nmath/standalone/test.c
- dh_installmenu -a
- #dh_installemacsen -a
- #dh_installpam -a
- #dh_installmime -a
- #dh_installinit -a
- #dh_installcron -a
- #dh_installmanpages -a -p$(corepackage) getline.3
- #dh_installman -p$(corepackage) doc/R.1
- ## dh_installinfo -a -n doc/manual/R-*.info*
- ## edd 04 Apr 2004 manual is dangling unless r-doc-pdf is installed ...
- ##(cd $(debdoc)/doc && ln -s ../../../../lib/R/doc/html .)
- ##(cd $(debdoc)/doc && ln -s ../../../../lib/R/doc/manual .)
- # ... so install doc as a link, as we already did with library
- # (cd $(debdoc) && ln -s ../../../lib/R/doc .)
- (cd $(debdoc) && ln -s ../../R/doc .)
- (cd $(debdoc) && ln -s ../../../lib/R/library .)
- # install lintian "silencer"
- install -p -m 0644 debian/$(corepackage).lintian \
- $(debbase)/$(corepackage)/usr/share/lintian/overrides/$(corepackage)
-# install -p -m 0644 debian/$(recdpackage).lintian \
-# $(debbase)/$(recdpackage)/usr/share/lintian/overrides/$(recdpackage)
- install -p -m 0644 debian/$(nmathpackage).lintian \
- $(debbase)/$(nmathpackage)/usr/share/lintian/overrides/$(nmathpackage)
- #dh_undocumented -a
- dh_installchangelogs -a -k NEWS
- dh_strip -a
- dh_compress -a
- dh_fixperms -a
- #dh_suidregister -a
- dh_makeshlibs -a
- dh_installdeb -a
- dh_perl -a
- dh_shlibdeps -a
-# @@echo "*** Pruning shlibdeps result from double atlas entry ***"
-# cat debian/r-base-core.substvars
-# perl -p -i -e 's/atlas2-base, //' debian/r-base-core.substvars
-# cat debian/r-base-core.substvars
-# @@echo "*** Pruning atlas from r-recommended shlibdeps ***"
-# cat debian/r-recommended.substvars
-# perl -p -i -e 's/atlas2-base, //' debian/r-recommended.substvars
-# cat debian/r-recommended.substvars
-# echo "*** Done ***"
- dh_gencontrol -a
- dh_md5sums -a -X'usr/bin/R' -X'usr/bin/Rscript' \
- -XLibIndex -Xindex.txt \
- -Xfunction.html -Xpackages.html
- dh_builddeb -a
-
-#binary: binary-indep binary-arch install-arch install-indep
-binary: make-stamp check binary-arch binary-indep
-
-.PHONY: build clean binary-indep binary-arch binary install install-arch install-indep
-@
-
-
-1.2
-log
- at removed gnome package entries
-@
-text
- at d6 1
-a6 1
-# $Id: rules,v 1.1 2007/05/06 17:03:31 edd Exp edd $
-a34 2
-
-
-a35 1
-#export DH_COMPAT = 4
-d116 3
-a118 1
-ldflags = -Wl,-O1
-d165 2
-a166 1
- perl -p -i -e 's|:\@@R_LD_LIBRARY_PATH\@@||' src/scripts/R.sh.in
-a242 3
-# libRmath_la_LDFLAGS=-Wl,-soname,libRmath.so.$(somaj) \
-# )
-
-d296 2
-a297 2
- #(cd debian; rm -vf r-base.dirs r-base.files r-base.lintian \
- # r-base.menu r-base.postinst)
-a315 27
-# $(MAKE) prefix=$(debtmp)/usr \
-# mandir=$(debtmp)/usr/share/man \
-# rsharedir=$(debtmp)/usr/share/R/share \
-# rincludedir=$(debtmp)/usr/share/R/include \
-# rdocdir=$(debtmp)/usr/share/R/doc \
-# install
-
- # link $R_HOME/bin/R to real one, and set R_HOME_DIR env.var.
- # edd 05 Sep 2005 expand this to R_SHARE_DIR, R_INCLUDE_DIR, R_DOC_DIR
- # edd 15 Jan 2006 now let those three point to /usr/share/R
- # edd 05 May 2007 no longer needed as DESTDIR now supported
-# (cd $(debtmp)/usr/lib/R/bin/; \
-# ln -svf ../../../bin/R R; \
-# cd ../../../bin; \
-# perl -p -i -e \
-# 's|^R_HOME_DIR=.*|R_HOME_DIR=/usr/lib/R|;\
-# s|^R_SHARE_DIR=.*|R_SHARE_DIR=/usr/share/R/share|;\
-# s|^R_INCLUDE_DIR=.*|R_INCLUDE_DIR=/usr/share/R/include|;\
-# s|^R_DOC_DIR=.*|R_DOC_DIR=/usr/share/R/doc|' R)
-
- # set browser to mozilla as mozilla-1.0.0 works with help.start()
- # (we're now using /usr/bin/sensible-browser, see above)
-# (cd $(debtmp)/usr/lib/R/etc; \
-# perl -p -i -e \
-# "s|R_BROWSER-'.*'|R_BROWSER-'/usr/bin/mozilla'|" \
-# Renviron)
-
-d318 4
-a321 3
- chmod a+x $(debtmp)/usr/share/R/share/sh/echo.sh \
- $(debtmp)/usr/share/R/share/sh/help-links.sh \
- $(debtmp)/usr/share/R/share/sh/help-print.sh
-a350 5
- # edd 02 May 2007 fix includedir in libR.pc
- (cd $(debtmp)/usr/lib/pkgconfig; \
- perl -p -i -e "s|/usr/lib/R/include|/usr/share/R/include|" \
- libR.pc )
-
-a353 2
- # doing this before html/latex moves ensure they keep their tex/latex
-# dh_movefiles -p$(recdpackage)
-a396 4
-# install -m 0644 src/nmath/standalone/libRmath.a \
-# $(debmat)/usr/lib
-# install -m 0644 src/nmath/standalone/libRmath.so \
-# $(debmat)/usr/lib/libRmath.so.$(libver)
-a403 2
-# install -m 0644 src/nmath/standalone/libRmath.pc \
-# $(debmat)/usr/lib/pkgconfig/libRmath.pc
-a404 2
- #(cd $(debmat)/usr/include; \
- # ln -s ../lib/R/include/Rmath.h .)
-d408 1
-@
-
-
-1.1
-log
- at Initial revision
-@
-text
- at d6 1
-a6 1
-# $Id$
-a12 1
-gnomepackage = r-gnome
-a34 8
-# set this to 1 (default) if you want the Gnome GUI package
-# edd 27 Feb 2005 as of R 2.1.0, the Gnome GUI is no longer included
-gnome = 0
-ifeq ($(gnome),0)
-gnomeconfig = --without-gnome
-else
-gnomeconfig = --with-gnome
-endif
-d201 1
-a201 1
- $(gnomeconfig) \
-a386 5
- # move the GNOME version to the r-gnome package
-#ifeq ($(gnome),1)
-# dh_movefiles -p$(gnomepackage) usr/lib/R/modules/R_gnome.so
-#endif
-
-a429 3
-#ifeq ($(gnome),1)
-# dh_installdirs -p$(gnomepackage) usr/share/lintian/overrides
-#endif
-a520 4
-#ifeq ($(gnome),1)
-# dh_installdirs $(gnomepackage)
-# dh_installchangelogs -p$(gnomepackage)
-#endif
-d530 1
-a530 1
- dh_link -i -N$(gnomepackage)
-a567 3
-#ifeq ($(gnome),1)
-# dh_link -p$(gnomepackage)
-#endif
-d583 1
-a583 1
- #dh_installmanpages -a -N$(gnomepackage) -p$(corepackage) getline.3
-a599 4
-#ifeq ($(gnome),1)
-# install -p -m 0644 debian/$(gnomepackage).lintian \
-# $(debbase)/$(gnomepackage)/usr/share/lintian/overrides/$(gnomepackage)
-#endif
-@
diff --git a/debian/shlibs.local b/debian/shlibs.local
deleted file mode 100644
index e561429..0000000
--- a/debian/shlibs.local
+++ /dev/null
@@ -1,2 +0,0 @@
-libtk8.4 0 tk8.4 (>= 8.4.16-2)
-libtcl8.4 0 tcl8.4 (>= 8.4.16-2)
diff --git a/debian/shlibs.local.hidden b/debian/shlibs.local.hidden
deleted file mode 100644
index e489893..0000000
--- a/debian/shlibs.local.hidden
+++ /dev/null
@@ -1 +0,0 @@
-libatlas 2 atlas2-base | atlas2
diff --git a/debian/simulate-buildd b/debian/simulate-buildd
deleted file mode 100644
index 1d60b84..0000000
--- a/debian/simulate-buildd
+++ /dev/null
@@ -1,10 +0,0 @@
-#!/bin/sh
-
-if [ ! -d debian ]
-then
- echo "Needs to run from a build directory."
-fi
-fakeroot debian/rules clean
-debian/rules build
-fakeroot debian/rules binary-arch
-fakeroot debian/rules clean
diff --git a/debian/source/format b/debian/source/format
deleted file mode 100644
index d3827e7..0000000
--- a/debian/source/format
+++ /dev/null
@@ -1 +0,0 @@
-1.0
diff --git a/debian/unused/Renviron-R_PAPERSIZE.patch b/debian/unused/Renviron-R_PAPERSIZE.patch
deleted file mode 100644
index 42969aa..0000000
--- a/debian/unused/Renviron-R_PAPERSIZE.patch
+++ /dev/null
@@ -1,12 +0,0 @@
---- Renviron.orig 2005-09-08 23:00:58.000000000 -0500
-+++ Renviron 2006-01-07 11:31:07.000000000 -0600
-@@ -6,7 +6,8 @@
-
- R_PLATFORM=${R_PLATFORM-'i486-pc-linux-gnu'}
- ## Default printer paper size
--R_PAPERSIZE=${R_PAPERSIZE-'letter'}
-+## edd 07 Jan 2006 try determining this at start-time based on paperconf
-+R_PAPERSIZE=${R_PAPERSIZE-`paperconf`}
- ## Default print command
- R_PRINTCMD=${R_PRINTCMD-'/usr/bin/lpr'}
- ## Default TeXMF stuff
diff --git a/debian/unused/control.r-gnome b/debian/unused/control.r-gnome
deleted file mode 100644
index 2f94c02..0000000
--- a/debian/unused/control.r-gnome
+++ /dev/null
@@ -1,27 +0,0 @@
-
-Package: r-gnome
-Section: gnome
-Architecture: all
-Depends: r-base-core
-Recommends: r-cran-gtkdevice
-Description: GNU R Gnome gui for statistical computing system
- R is `GNU S' - A language and environment for statistical computing
- and graphics. R is similar to the award-winning S system, which was
- developed at Bell Laboratories by John Chambers et al. It provides a
- wide variety of statistical and graphical techniques (linear and
- nonlinear modelling, statistical tests, time series analysis,
- classification, clustering, ...).
- .
- R is designed as a true computer language with control-flow
- constructions for iteration and alternation, and it allows users to
- add additional functionality by defining new functions. For
- computationally intensive tasks, C, C++ and Fortran code can be
- linked and called at run time.
- .
- This package used to provide the dynamic link libraries needed to start
- GNU R with the GNOME libraries frontend as in "R --gui=GNOME".
- .
- As of R 2.1.0, this interface is no longer provided with the upstream
- sources. As such, this package is now an empty stub that will be removed
- in a subsequent revision of the Debian package.
-
diff --git a/debian/unused/makeLazyLoad.R.patch b/debian/unused/makeLazyLoad.R.patch
deleted file mode 100644
index fe3ed1c..0000000
--- a/debian/unused/makeLazyLoad.R.patch
+++ /dev/null
@@ -1,79 +0,0 @@
-Message-ID: <16731.1755.857376.453277 at mithrandir.hornik.net>
-Date: Wed, 29 Sep 2004 21:02:51 +0200
-To: Dirk Eddelbuettel <edd at debian.org>
-Cc: Prof Brian Ripley <ripley at stats.ox.ac.uk>,
- Kurt Hornik <Kurt.Hornik at wu-wien.ac.at>,
- Chris Lawrence <chris at lordsutch.com>, bates at stat.wisc.edu,
- kurt.hornik at r-project.org, martin.maechler at r-project.org
-Subject: Re: Still fails under 2.0.0 beta 2004.09.28 (Re: Build failures with R 2.0.0 beta)
-Reply-To: Kurt.Hornik at wu-wien.ac.at
-From: Kurt Hornik <Kurt.Hornik at wu-wien.ac.at>
-
->>>>> Dirk Eddelbuettel writes:
-
-> On Wed, Sep 29, 2004 at 01:32:28PM +0100, Prof Brian Ripley wrote:
->> I am effectively offline until Friday, but could try to look then.
-
-> I would _greatly_ appreciate your help. I applied Kurt's patch, but
-> that didn't fix it. I may have picked the wrong branch.
-
-Interesting. I just tried the effect of applying
-
---- makeLazyLoad.R (revision 31251)
-+++ makeLazyLoad.R (working copy)
-@@ -60,9 +60,13 @@
- stop(paste("There is no package called", sQuote(package)))
- dataDir <- file.path(pkgpath, "data")
- } else {
-- pkgpath <- sub("/data$", "", dataDir)
-- package <- basename(pkgpath)
-- # avoid builddir != srcdir problems -- assume package has been installed
-+ pkgpath <- dirname(dataDir)
-+ package <- Sys.getenv("R_PACKAGE_NAME")
-+ if(!nchar(package)) {
-+ package <- basename(pkgpath)
-+ }
-+ ## avoid builddir != srcdir problems -- assume package has been
-+ ## installed
- lib.loc <- c(dirname(pkgpath), .libPaths())
- }
- if(file_test("-d", dataDir)) {
-
-and that seems to do the job for me.
-
-Can you pls try again?
-
-Brian: I am not sure about the intentions of the subsequent
-
- lib.loc <- c(dirname(pkgpath), .libPaths())
-
-Is dirname(pkgpath) supposed to be the path to the library installed
-into? The Unix INSTALL script makes this available in the environment
-variable R_PACKAGE_DIR, so we might want to use this as well ...
-
-Best
--k
-
-> I'd be happy to for now apply a patch in Debian's package only, but I
-> would not be surprise if the bug hit in other places too. I really
-> think that should be fixed before 2.0.0.
-
->> I don't understand why this has not been resolved in the alpha period,
->> though.
-
-> Because of an unfortunate combination of factors:
-
-> i) 2.0.0 breaks old packages, so I have _not_ inserted 2.0.0 into Debian
-> unstable yet, so no autobuilder reports.
-
-> ii) When I reported the cluster build failure, Martin could not replicate it
-> as I hadn't realized yet that it was tied also using $Package-$Version/
-> directories.
-
-> Dirk
-
-> --
-> Those are my principles, and if you don't like them... well, I have others.
-> -- Groucho Marx
-
-
diff --git a/debian/unused/r-gnome.links b/debian/unused/r-gnome.links
deleted file mode 100644
index 646c5d5..0000000
--- a/debian/unused/r-gnome.links
+++ /dev/null
@@ -1 +0,0 @@
-usr/share/doc/r-base-core usr/share/doc/r-gnome
diff --git a/debian/unused/r-gnome.lintian b/debian/unused/r-gnome.lintian
deleted file mode 100644
index 6ef26a4..0000000
--- a/debian/unused/r-gnome.lintian
+++ /dev/null
@@ -1 +0,0 @@
-r-gnome: menu-command-not-in-package /usr/lib/menu/r-gnome:4 /usr/bin/R
diff --git a/debian/unused/r-gnome.menu b/debian/unused/r-gnome.menu
deleted file mode 100644
index f139ee2..0000000
--- a/debian/unused/r-gnome.menu
+++ /dev/null
@@ -1,4 +0,0 @@
-?package(r-gnome):needs="x11" \
- section="Apps/Math" \
- title="GNU R (Gnome)" \
- command="/usr/bin/R --gui=GNOME --no-save"
diff --git a/debian/unused/r-gnome.preinst b/debian/unused/r-gnome.preinst
deleted file mode 100644
index 06fc5f8..0000000
--- a/debian/unused/r-gnome.preinst
+++ /dev/null
@@ -1,26 +0,0 @@
-#! /bin/sh
-#
-# r-gnome.preinst
-#
-# Written and GPL'ed by Dirk Eddelbuettel <edd at debian.org>
-
-set -e
-
-case "$1" in
- install|upgrade)
- # we want symlinks to r-base so old directories cannot exist
- test -d /usr/share/doc/r-gnome && rm -rf /usr/share/doc/r-gnome
- ;;
-
- abort-upgrade)
- ;;
-
- *)
- echo "preinst called with unknown argument \`$1'" >&2
- exit 0
- ;;
-esac
-
-#DEBHELPER#
-
-exit 0
diff --git a/debian/updated_x11_logo.patch b/debian/updated_x11_logo.patch
deleted file mode 100644
index a4a7e9b..0000000
--- a/debian/updated_x11_logo.patch
+++ /dev/null
@@ -1,7692 +0,0 @@
-Index: devX11.c
-===================================================================
---- devX11.c (revision 68909)
-+++ devX11.c (working copy)
-@@ -1606,7 +1606,7 @@
- XInternAtom(display, "_NET_WM_ICON", False),
- XInternAtom(display, "CARDINAL", False), 32,
- PropModeReplace,
-- (const unsigned char*) rlogo_icon, 2 + 48*48);
-+ (const unsigned char*) rlogo_icon, 2 + 99*77);
-
- /* set up protocols so that window manager sends */
- /* me an event when user "destroys" window */
-Index: rlogo_icon.h
-===================================================================
---- rlogo_icon.h (revision 68909)
-+++ rlogo_icon.h (working copy)
-@@ -1,51 +1,7625 @@
- unsigned long rlogo_icon[] = {
-- 48,48,
-- 0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,
-- 0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,
-- 0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,
-- 0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,
-- 0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,
-- 0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,
-- 0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x1868983,0x27e837a,0x6959595,0x2a888b85,0x5881857f,0x7d7f827b,0x9b7e827a,0xb17c8078,0xc07c7f78,0xc97c8179,0xca797e76,0xc3777c73,0xb4777b74,0x9d747971,0x8074786f,0x5b757870,0x2e797d75,0x77e847e,0x164685f,0x16b7168,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,
-- 0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x38a8d88,0x68b8f89,0x288b8e89,0x71868983,0xba848881,0xf6838780,0xff838780,0xff838780,0xff848881,0xff848881,0xff848881,0xff848881,0xff858982,0xff81857e,0xff80847d,0xff7f837b,0xff7c8079,0xff787e76,0xff747a71,0xff71766d,0xf86f736b,0xbf6d7269,0x766c7169,0x2c70726c,0x7656a62,0x3666b63,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,
-- 0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x58a8e87,0x1a8d918b,0x608a8f88,0xc9888c86,0xff878c85,0xff898d87,0xff8b8f89,0xff8c9089,0xfe8d918b,0xfe8f938d,0xff90948e,0xff91958e,0xff91968f,0xff91968f,0xff939891,0xff8f948d,0xff8f938c,0xff8d918b,0xff8a8f88,0xff878c85,0xfe858983,0xfe82867f,0xff7d8179,0xff777c73,0xff70756c,0xff6a6f66,0xcf676c63,0x65666c63,0x1d656a61,0x55f655b,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,
-- 0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x290978c,0x208e918b,0x728c9089,0xe48a8f88,0xff8c918a,0xff90948d,0xff91958e,0xfe929690,0xff91958e,0xff8d918a,0xff8d9189,0xff8e938c,0xff92968f,0xff959992,0xff959a93,0xff959a93,0xff959a93,0xff949992,0xff939891,0xff939891,0xff929790,0xff91968f,0xff90948e,0xff8e938c,0xff8a8f88,0xff858a83,0xfe81857e,0xff7b8078,0xff737870,0xff696e65,0xe963685f,0x7a61675e,0x245f645b,0x3626660,0x0,0x0,0x0,0x0,0x0,0x0,0x0,
-- 0x0,0x0,0x0,0x0,0x0,0x0,0x1091948f,0x5a8f928c,0xd68e918a,0xff90948d,0xff969a93,0xfe979a94,0xfe939790,0xff878c84,0xff7b7f77,0xff7a7f77,0xff858983,0xff92968f,0xff9b9f99,0xff9da19b,0xff999e97,0xff91958f,0xfe888c84,0xff7e827b,0xff767a73,0xff70756d,0xff6d726a,0xff6c7068,0xff6d7169,0xff6f746b,0xff72776f,0xff777c74,0xff7c8179,0xfe81867f,0xfe848881,0xfe82857f,0xfe7b8079,0xff72776f,0xff656a62,0xdd5e635a,0x605b6058,0x135b6057,0x0,0x0,0x0,0x0,0x0,0x0,
-- 0x0,0x0,0x0,0x0,0x0,0x2792968f,0x9790938d,0xff91948f,0xff9a9e97,0xfe9da19b,0xfe959992,0xff7e837b,0xff6f746c,0xff7c8078,0xff949791,0xffa8aca6,0xffb4b7b2,0xffafb2ad,0xfe999d97,0xff81857e,0xff6e726b,0xff5d6259,0xff53584f,0xfc4b4f47,0xf2464b43,0xea454941,0xe4454941,0xe1444941,0xe0474c44,0xe34b5048,0xe84f544c,0xf052574e,0xfa555a51,0xff5a6057,0xff62685e,0xff6e736b,0xff7a7e77,0xfe7d827a,0xfe797e75,0xff6d7169,0xff5d625a,0xa0575c53,0x2d54594f,0x0,0x0,0x0,0x0,0x0,
-- 0x0,0x0,0x0,0x0,0x3791958f,0xbf91958e,0xff969993,0xffa5a9a3,0xfea0a49e,0xff848881,0xff6a6f67,0xff7b8078,0xff9ea29b,0xffbabdb8,0xffc6c9c4,0xfeb5b8b3,0xfe949892,0xff737770,0xff535850,0xf93e423a,0xdc30342d,0xf150534e,0xde52544f,0xf8767874,0xdf7f817d,0xca888a86,0xbb8f918d,0xb4929591,0xb3949692,0xba929490,0xc68e918c,0xda8a8c88,0xec82847f,0xe871756e,0xeb686d65,0xeb5c6159,0xf2545950,0xff61665e,0xff72766e,0xff797e76,0xff71766e,0xff5e635b,0xc853584f,0x3f4e534b,0x0,0x0,0x0,0x0,
-- 0x0,0x0,0x0,0x37949892,0xcf92968f,0xff999d96,0xfeafb2ad,0xfe9a9e97,0xff72776f,0xff6d7169,0xff979b95,0xffbfc2be,0xffd1d3d0,0xfec0c2be,0xfe979c95,0xff6c7069,0xff434740,0xdf252922,0xe14a4d48,0xf180817d,0xc0999b96,0xe6d7d7d5,0xc3fbfbfa,0xffffffff,0xffffffff,0xffffffff,0xffffffff,0xffffffff,0xffffffff,0xffffffff,0xffffffff,0xffffffff,0xf5ffffff,0xd5ffffff,0xdbe2e3e1,0xdebdbfbb,0xdf949892,0xe8787c76,0xe85b6057,0xfa5f645b,0xff72776f,0xfe737870,0xff60655c,0xd94f544b,0x3f4a4f47,0x0,0x0,0x0,
-- 0x0,0x0,0x21959993,0xcb949791,0xff9a9e97,0xfeb8bbb6,0xff939690,0xff666b63,0xff787d75,0xffaeb1ac,0xffd5d7d4,0xffd4d6d3,0xfeaeb1ac,0xff797d76,0xff42463f,0xf331352e,0xeb61635f,0xd0969895,0xc5cbced2,0xf4eef1f7,0xffeef1f7,0xfceaedf2,0xffe7eaef,0xfae5e7ed,0xfae5e7ed,0xfae5e7ed,0xfae5e7ed,0xfae5e7ed,0xfae5e7ed,0xfae5e7ed,0xfae5e7ed,0xfae5e7ed,0xfbe5e7ed,0xfee6e9ee,0xfde9ecf1,0xf1f4f5f9,0xd4ffffff,0xd5f7f6f4,0xe8c4c5c1,0xe790938e,0xea62675f,0xfe696f66,0xff73776f,0xff5d625a,0xd4494e46,0x2949 [...]
-- 0x0,0x4989e98,0xa7939791,0xff989c96,0xfebbbeb9,0xff979a94,0xff60655c,0xff7e827b,0xffbabdb9,0xffe0e2df,0xffd3d5d2,0xfea0a49e,0xff5f645d,0xf8272b24,0xdb3a3e38,0xe3a1a3a1,0xebf0f0f0,0xffffffff,0xd9bcc5d8,0xf4a0acc7,0xfaa0acc7,0xfaa1adc8,0xfaa1adc8,0xfaa1adc8,0xfaa1adc8,0xfaa1adc8,0xfaa1adc8,0xfaa1adc8,0xfaa1adc8,0xfaa1adc8,0xfaa1adc8,0xfaa1adc8,0xfaa1adc8,0xfaa1adc9,0xf99daac5,0xec94a0b9,0xe397a1b7,0xd8b3b8c7,0xcef1f2f7,0xe5fdfdfc,0xd1c4c7c3,0xd37d827a,0xfe6c7068,0xff72776f,0xff565b53, [...]
-- 0x0,0x52959993,0xff969a93,0xffaeb2ad,0xfeabaea9,0xff5e625a,0xff7b7f78,0xffbabdb8,0xffe7e8e6,0xffd6d7d4,0xfe9ea19c,0xff525750,0xec1a1e17,0xce555753,0xd7d6d6d5,0xf7ffffff,0xffffffff,0xffffffff,0xcf929eb8,0xf79babcd,0xff7a86a2,0xff6a748d,0xff6a738c,0xff6a738c,0xff6a738c,0xff6a738c,0xff6a738c,0xff6a738c,0xff6a738c,0xff6a738c,0xff6a738c,0xff6a738c,0xff6a738c,0xff6a748d,0xff69758e,0xff6c7894,0xff7785a4,0xe96d7b9d,0xd76d7790,0xcfb6bac5,0xe5ffffff,0xebefefee,0xb2949791,0xf16d7269,0xff70756d [...]
-- 0x1b0a7b6,0xd2949891,0xff9ca09a,0xfec5c7c3,0xff656961,0xff6e736a,0xffaaada8,0xffe9eae8,0xffe0e2e0,0xfea9ada7,0xff565a52,0xeb181c16,0xbf565955,0xd7ededed,0xfdffffff,0xffffffff,0xfefefefe,0xffffffff,0xd093a0b8,0xf6a7b6d9,0xff5b657b,0xff6d7a96,0xff707c9a,0xff707c9a,0xff6f7c99,0xff6c7997,0xff6c7997,0xff6d7a98,0xff6d7a98,0xff6d7a98,0xff6d7a97,0xff6d7a98,0xff6e7a98,0xff6e7b99,0xff6d7b98,0xfe6a7692,0xfe5f6a83,0xff606b83,0xff677490,0xee58637c,0xc9a5a9b4,0xf8fdfdfe,0xdffcfcfc,0xaea9ada7,0xf7 [...]
-- 0x39959992,0xff949892,0xffadb0ab,0xff9b9e99,0xff5a5e56,0xff90938d,0xffd8d9d7,0xffefefee,0xffc1c3bf,0xff6e726b,0xf821241e,0xd5525451,0xd9eeefee,0xfcffffff,0xfffefefe,0xfefefefe,0xffffffff,0xffffffff,0xd093a0b9,0xf6a5b5d8,0xff545d73,0xff7f91b6,0xff8495bc,0xff8395bc,0xff8496bc,0xffabbada,0xffaab9dc,0xffa5b5d9,0xffa5b5d9,0xffa5b5d9,0xffa7b6da,0xffa5b4d8,0xff9babcf,0xff90a1c5,0xff8798be,0xff7e8fb5,0xff7786aa,0xfe6f7d9c,0xfe636f89,0xff5b6781,0xea454e63,0xe4d1d3d7,0xffffffff,0xe9ffffff,0xb [...]
-- 0x8292968f,0xff969a94,0xfebdc0bc,0xff62675e,0xff70756d,0xffb0b3ad,0xfff1f1f0,0xffdfe1de,0xfe9ca09a,0xff393d36,0xea3b3d39,0xdecacac9,0xfdffffff,0xffffffff,0xfefefefe,0xffffffff,0xffffffff,0xffffffff,0xd093a0b9,0xf6a5b5d8,0xff555e75,0xff8192b8,0xff8597be,0xff8496be,0xfea4b4d6,0xff8e9cb9,0xff5e6880,0xff5d6880,0xff5d6880,0xff5d6880,0xff5d677f,0xff5c677f,0xff68748e,0xfe7b89a7,0xff8291b2,0xff8495ba,0xff8799c1,0xff8496bd,0xff7887a9,0xfe677490,0xff424c62,0xd3797d88,0xf4f2f2f3,0xffffffff,0xe [...]
-- 0xb590948d,0xff969a93,0xffafb2ad,0xff53584f,0xff82867e,0xffcaccc8,0xfff4f5f4,0xffcbcdc9,0xff777b74,0xf320241d,0xe9787a76,0xfcffffff,0xffffffff,0xfefefefe,0xffffffff,0xffffffff,0xffffffff,0xffffffff,0xd093a0b9,0xf6a5b5d8,0xff555e75,0xff8092b8,0xff8597be,0xff8496bd,0xff95a4c4,0xfe474f64,0xf31b1e26,0xcb222632,0xcd222632,0xcd222632,0xcc212531,0xcd222633,0xe9343b4b,0xff515c74,0xfe6f7b99,0xfe7886a5,0xff8294b9,0xff8597bf,0xff8597bf,0xfe7a89a9,0xff545f78,0xd3303745,0xf4e2e3e4,0xffffffff,0xf [...]
-- 0xcf8e928b,0xff949892,0xff9b9e98,0xff585d54,0xff8d928a,0xffd8d9d7,0xfff0f1f0,0xffbcbfba,0xff5b5f57,0xeb31342e,0xe0abacab,0xffffffff,0xfefefefe,0xffffffff,0xffffffff,0xffffffff,0xffffffff,0xffffffff,0xd093a0b9,0xf6a5b5d8,0xff555e75,0xff8092b8,0xff8597be,0xff8497be,0xff8895b4,0xfc3f475b,0xc7383a40,0xfcf7f7f7,0xf9efefef,0xf9efefef,0xf9efefef,0xfdf0f0f1,0xd3e0e1e4,0xaf6d778c,0xff717e9d,0xfe7783a0,0xff7080a1,0xff8699c0,0xff8597bf,0xff8596b9,0xff616d88,0xf2282e3b,0xfbdbdbdc,0xffffffff,0xf [...]
-- 0xce8a8e88,0xff91958f,0xff8b8f89,0xff5b5f57,0xff90958e,0xffdbdddb,0xffedeeed,0xffb5b8b3,0xff4f544c,0xf74b4e49,0xf3cccdcd,0xffffffff,0xffffffff,0xffffffff,0xffffffff,0xffffffff,0xffffffff,0xffffffff,0xd093a0b9,0xf6a5b5d8,0xff555e75,0xff8092b8,0xff8597be,0xff8497be,0xff8795b3,0xfc40475c,0xc33d3e45,0xffffffff,0xffffffff,0xffffffff,0xffffffff,0xffffffff,0xfeffffff,0xe3cfd4dd,0xdc8091b3,0xff7a87a2,0xff6a7896,0xff8799c1,0xff8496be,0xff8e9ec2,0xfe67748f,0xff222734,0xffd7d7d9,0xfeffffff,0xf [...]
-- 0xb4878b85,0xff8d918b,0xff8a8e87,0xff5b6057,0xff8d908a,0xffd5d7d5,0xffecedec,0xffb5b8b3,0xff535851,0xf74e524d,0xf2d0d1cf,0xffffffff,0xffffffff,0xffffffff,0xffffffff,0xffffffff,0xffffffff,0xffffffff,0xd093a0b9,0xf6a5b5d8,0xff555e75,0xff8092b8,0xff8597be,0xff8497be,0xff8795b3,0xfc40475c,0xc33d3e45,0xffffffff,0xffffffff,0xffffffff,0xffffffff,0xfefefefe,0xffffffff,0xe6d6dae4,0xd88f9fc4,0xff7e8aa4,0xff657290,0xff8799c1,0xff8396bd,0xff95a6c9,0xff646f89,0xf01a1e28,0xfbd8d8d9,0xffffffff,0xf [...]
-- 0x83858982,0xff878c85,0xfe8a8e87,0xff5d625a,0xff82857f,0xffc4c6c3,0xffecedeb,0xffbdbfba,0xff6a6e67,0xe93e423c,0xdeb7b8b6,0xffffffff,0xfefefefe,0xffffffff,0xffffffff,0xffffffff,0xffffffff,0xffffffff,0xd093a0b9,0xf6a5b5d8,0xff555e75,0xff8092b8,0xff8597be,0xff8497be,0xff8795b3,0xfc40475c,0xc43d3f45,0xffffffff,0xfefefefe,0xfefefefe,0xfefefefe,0xfffefefe,0xf5fcfcfd,0xecc0c9dc,0xfd9daed1,0xff818ba1,0xff5f6c8a,0xff889ac2,0xff8899c0,0xfe9dacd0,0xff535c72,0xcb0f1119,0xf2dfdfdf,0xffffffff,0xf [...]
-- 0x37848881,0xff80847d,0xff888c85,0xff6b7068,0xff737870,0xffaaada8,0xffe6e7e5,0xffcbceca,0xff898d86,0xef343931,0xe58e8f8c,0xffffffff,0xffffffff,0xfefefefe,0xffffffff,0xffffffff,0xffffffff,0xffffffff,0xd093a0b9,0xf6a5b5d8,0xff555e75,0xff8092b8,0xff8597be,0xff8597be,0xff808ead,0xfd495268,0xe54f5668,0xfebcc4d5,0xf9bac0d2,0xfab9c0d2,0xfbbac1d2,0xeeb5bdcf,0xd894a3c1,0xf899abcf,0xff99a5ba,0xfe636e81,0xff7686ab,0xff8597bf,0xfea5b6d8,0xff8c9ab8,0xff292e3c,0xc0525356,0xf0f0f0f0,0xffffffff,0xf [...]
-- 0x0,0xd27c8078,0xff81857e,0xfe7c817a,0xff696e66,0xff8e928b,0xffcbcdca,0xffd9dad8,0xfea7aba5,0xff5a5f56,0xe65b5f58,0xdbdfdfde,0xffffffff,0xfffefefe,0xfefefefe,0xffffffff,0xffffffff,0xffffffff,0xd093a0b9,0xf6a5b5d8,0xff555e75,0xff8092b8,0xff8597be,0xff8597be,0xfe7786a5,0xff6c7893,0xff7d8cab,0xff808eb1,0xff8190b2,0xff8090b2,0xff8090b1,0xff8493b5,0xff9eaecd,0xffa0adc1,0xfe5d6573,0xff657390,0xff90a2c8,0xfeaabad8,0xffa5b4d0,0xff4a5265,0xe90c0d12,0xd4c5c4c5,0xf7ffffff,0xffffffff,0xf8ffffff [...]
-- 0x0,0x51797d76,0xff787d75,0xff81857e,0xfe73776f,0xff787d75,0xffa3a5a0,0xffd4d6d3,0xffc1c4c0,0xff8e928b,0xf3464b42,0xcd7d807b,0xe0fcfdfc,0xffffffff,0xfffefefe,0xfefefefe,0xffffffff,0xffffffff,0xd093a0b9,0xf6a5b5d8,0xff555e75,0xff8092b8,0xff8597be,0xff8597be,0xff8294ba,0xff58647d,0xff596276,0xff5d657a,0xff5e677b,0xff5e677b,0xff5f677c,0xff5e667a,0xff4e5667,0xff525a6c,0xfe8f9db8,0xfeacbcdc,0xffacbad6,0xff8390aa,0xfe3a4153,0xfa16181c,0xad7e7e7f,0xe9fbfbfb,0xffffffff,0xffffffff,0xa1c4c6c2 [...]
-- 0x0,0x0,0xae747870,0xff787c74,0xff7d817a,0xfe747871,0xff848880,0xffacafaa,0xffc9ccc7,0xfeb1b5af,0xff7f847d,0xe4484d45,0xd29c9f9b,0xeefcfcfc,0xfcffffff,0xffffffff,0xfefefefe,0xffffffff,0xd093a0b9,0xf6a5b5d8,0xff555e75,0xff8092b8,0xff8597be,0xff8496bd,0xff8597be,0xff92a3c9,0xff8b9bc0,0xff8797bb,0xff8697bb,0xff8394b8,0xff8090b5,0xff7c8eb3,0xff91a2c6,0xfea8b6d4,0xff707c95,0xff4b5469,0xfa353b4d,0xf01e212b,0xe3252527,0xcaa2a2a2,0xf5ffffff,0xffffffff,0xf2ffffff,0xeae4e6e4,0xf8828680,0xba28 [...]
-- 0x0,0x0,0x1a73796f,0xd36f736b,0xff757a72,0xfe7b7e77,0xfe797d75,0xff898d86,0xffabaea9,0xffbbbeba,0xfea8aca6,0xff7e827b,0xec575c54,0xc6939791,0xdff0f0ef,0xfdffffff,0xffffffff,0xffffffff,0xcf93a0b9,0xf6a5b5d8,0xff555e75,0xff8092b8,0xff8597be,0xff8496bd,0xfe92a3c8,0xffabbad6,0xff97a5c3,0xff94a1bf,0xff93a1bf,0xff8f9dbd,0xfe8c9cbe,0xff8698bc,0xff8e9fc3,0xff68748d,0xfe242937,0xfa2b2e37,0xd23c3e43,0xb9868786,0xccf3f3f3,0xf8ffffff,0xffffffff,0xf0f9faf9,0xc6d6d7d4,0xee7e817b,0xd8333731,0x2327 [...]
-- 0x0,0x0,0x0,0x326d7069,0xd66a6f67,0xff70756d,0xff787d75,0xfe7d817a,0xff8a8e87,0xffa3a6a1,0xffafb2ac,0xfea2a69f,0xff848881,0xef5c6158,0xd9858882,0xe5d2d3d1,0xedfafaf9,0xffffffff,0xd095a1ba,0xf6a5b5d8,0xff555e75,0xff8092b8,0xff8597be,0xff8496bd,0xffa3b3d3,0xfe66728b,0xfb2f3544,0xeb31384a,0xee333b4d,0xfc495369,0xff697693,0xfe7c8ba9,0xff7988a8,0xff626e88,0xfe616c86,0xef8490ab,0xcda5aec3,0xdbd5d8e1,0xf3fbfbfd,0xeaffffff,0xedededec,0xcbb7bab5,0xfd757972,0xde3a3d39,0x3d1f211e,0x0,0x0,0x0,
-- 0x0,0x0,0x0,0x0,0x36696e66,0xc5656a62,0xff6a6f67,0xff737870,0xfe7c8079,0xff888b84,0xff999c96,0xffa2a6a0,0xfe9ca09a,0xff8b8f88,0xff6d7169,0xe76c7068,0xda9fa39d,0xe9dadad6,0xd18a97af,0xf7a5b5d8,0xff555e75,0xff8092b8,0xff8597be,0xff8496be,0xff8b9ab9,0xfd3b4255,0xdd212227,0xdd929397,0xdc8a8b90,0xdd747984,0xf95d6880,0xff6e7c9a,0xfe707d9a,0xfe697591,0xff6c7892,0xff6c7894,0xff687493,0xeb5d6985,0xd4969ba6,0xd4c2c4c1,0xda8c9089,0xff61655e,0xcd333731,0x401d1f1b,0x0,0x0,0x0,0x0,
-- 0x0,0x0,0x0,0x0,0x0,0x26636960,0xa160665d,0xf6646960,0xff6a6f67,0xff767a72,0xfe81857d,0xff8e928b,0xff999c96,0xfe989c95,0xfe90948d,0xff81857d,0xfe6c7068,0xe8777a70,0xea727e92,0xfca5b5d7,0xff555e75,0xff8092b8,0xff8597be,0xff8497be,0xff8694b3,0xfc40475c,0xbe404249,0xffffffff,0xffffffff,0xdfffffff,0xd9a7adba,0xf462708e,0xff7b88a6,0xff687592,0xff687593,0xfe636e89,0xfe6b7791,0xff606c87,0xf94a5367,0xff5c6161,0xfb51544e,0xa9262924,0x2c171a15,0x0,0x0,0x0,0x0,0x0,
-- 0x0,0x0,0x0,0x0,0x0,0x0,0xd63685f,0x695d6258,0xc95d6259,0xff60655d,0xff686d65,0xff737870,0xfe80837c,0xff8b8f88,0xff91958e,0xfe91968f,0xff8d918b,0xff84877d,0xff747f90,0xffa5b4d6,0xfe555e75,0xff8092b8,0xff8597be,0xff8497be,0xff8795b3,0xfd40475c,0xd0383a3f,0xd6dddedb,0xe8d8d9d7,0xb9cdceca,0xb5b0b3b3,0xe869748a,0xff717f9e,0xff7784a1,0xff7e8fb3,0xff8496bd,0xff7281a2,0xfe66738e,0xff515c74,0xff3d434f,0x7f252928,0xe121206,0x0,0x0,0x0,0x0,0x0,0x0,
-- 0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x2d5b5f56,0x79585d54,0xcf585e55,0xff5a5f57,0xff61665e,0xff6b7068,0xff767b73,0xfe80847c,0xff878b84,0xff8c9087,0xff798497,0xffa5b4d6,0xff555e75,0xff8092b8,0xff8597be,0xff8497be,0xff8795b3,0xfe40485c,0xf33c3f41,0xdf92968f,0xed959993,0xcd848881,0xe08d918a,0xf983898f,0xff6d7a98,0xff7784a1,0xff717f9e,0xff8698c0,0xff8799c1,0xff7584a4,0xff626e89,0xff495267,0x68505869,0x3dae3fe,0x0,0x0,0x0,0x0,0x0,0x0,
-- 0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x366685c,0x2d535850,0x65535850,0xae535850,0xf352584f,0xff555a51,0xff5b6058,0xff636860,0xff6c7066,0xff6e7a8c,0xfea5b4d6,0xff555e75,0xff8092b8,0xff8597be,0xff8497be,0xfe8795b3,0xff40485c,0xff3e4143,0xff898d85,0xff81857d,0xff7c8079,0xff72766e,0xff616662,0xff576071,0xff7380a0,0xfe7884a2,0xff7888ab,0xff8799c1,0xff8293b9,0xfe6d7a98,0xff56617a,0xe5495264,0x2f565b6a,0x0,0x0,0x0,0x0,0x0,0x0,
-- 0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x1b4f544c,0x374c5149,0x664e524a,0xa04d5249,0xd54c5249,0xff4b4e44,0xff5f6a7c,0xffa4b3d5,0xfe555e75,0xff8092b8,0xff8597be,0xff8497be,0xfe8795b3,0xff40475b,0xff2a2d2e,0xff51554c,0xff484c44,0xff41453e,0xff3c4039,0xd5363b33,0xc1444c53,0xf26e7b99,0xff74819e,0xff7482a1,0xff8496bd,0xff8698c0,0xff7a8aac,0xff677490,0xff4b556b,0x9d4e5566,0xe555b67,0x0,0x0,0x0,0x0,0x0,
-- 0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x35b5f58,0x14494e46,0x22464b43,0x2534351d,0xb86d7b97,0xfba6b5d7,0xff555e75,0xff8092b8,0xff8597be,0xff8497be,0xff8795b3,0xfe40475b,0xde23262a,0x833d4038,0x6d3a3d37,0x4d393d36,0x3032352e,0x2026291f,0x29585f68,0xa2697591,0xff717f9e,0xfe7684a1,0xff7686a8,0xff8699c0,0xff8597be,0xfe6f7d9b,0xff5f6b85,0xff474f63,0x4b575d6c,0x2c9cccc,0x0,0x0,0x0,0x0,
-- 0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0xa17585a5,0xfaa7b6d9,0xff535c72,0xff7e90b6,0xff8295bc,0xff8294bc,0xff8593b2,0xfd40485c,0xb6292b32,0x28c8941,0x6434641,0x0,0x0,0x0,0x0,0x4d67728c,0xee6e7b97,0xff727f9c,0xfe7582a1,0xff8192b8,0xff8396be,0xff7e8fb3,0xfe687490,0xff4f5a72,0xd14a5264,0x14525869,0x0,0x0,0x0,0x0,
-- 0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0xa17585a4,0xfaa7b6d9,0xff717d97,0xffa5b5d7,0xffabbadd,0xffabbadd,0xff9faecd,0xfd40475c,0xb22a2c33,0x0,0x0,0x0,0x0,0x0,0x0,0xe9099aa,0x9766728e,0xff727f9e,0xfe8492b0,0xff9aa8ca,0xffadbcdf,0xffacbbde,0xfe9eadcc,0xff7f8ca8,0xff4a5369,0x76545b69,0x6616670,0x0,0x0,0x0,
-- 0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0xa37a8bac,0xfc72809c,0xff515b72,0xff515a71,0xff515b72,0xff515b72,0xff505a71,0xfe3a4255,0xb32a2c33,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x486c7690,0xe267738f,0xff56627b,0xff4c566b,0xff4e586e,0xff4e586e,0xff4e576d,0xff4d576c,0xff465065,0xf9434c5d,0x27616977,0x0,0x0,0x0,
-- 0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x7e697289,0xcc393d48,0xd330333b,0xd330333b,0xd330333b,0xd330333b,0xd330333b,0xd931353e,0x983d4047,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x8ddebff,0x77525868,0xd4393d47,0xca2f323a,0xca30333b,0xca30333b,0xca30333b,0xca30333b,0xca30333b,0xd0343741,0x7a5a606c,0x6686e7b,0x0,0x0,
-- 0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,
-- 0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,
-- 0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,
-- 0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,
-- 0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,
-- 0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,0x0,
-+99, 77,0x00000000,
-+0x00000000,
-+0x00000000,
-+0x00000000,
-+0x00000000,
-+0x00000000,
-+0x00000000,
-+0x00000000,
-+0x00000000,
-+0x00000000,
-+0x00000000,
-+0x00000000,
-+0x00000000,
-+0x00000000,
-+0x00000000,
-+0x00000000,
-+0x00000000,
-+0x00000000,
-+0x00000000,
-+0x00000000,
-+0x00000000,
-+0x00000000,
-+0x00000000,
-+0x00000000,
-+0x00000000,
-+0x00000000,
-+0x00000000,
-+0x00000000,
-+0x00000000,
-+0x00ffffff,
-+0x00ffffff,
-+0x00fbfafa,
-+0x00d3caca,
-+0x00ffffff,
-+0x00000000,
-+0x00bfbcc4,
-+0x01bcb9c2,
-+0x08bcbfc1,
-+0x10bfc1c3,
-+0x1dbec1c4,
-+0x32c0c2c5,
-+0x48c3c4c7,
-+0x5ac5c7ca,
-+0x6ac4c6ca,
-+0x7cc3c5c8,
-+0x8bc1c4c6,
-+0x97c0c2c5,
-+0x9fbfc1c4,
-+0xa4bec0c3,
-+0xa5bdbfc3,
-+0xa3bdbfc2,
-+0x9dbdbec2,
-+0x93bdbfc2,
-+0x86bdbfc2,
-+0x76bdbfc3,
-+0x65bdc0c3,
-+0x55bcbec1,
-+0x41b8babd,
-+0x2bb7b8bc,
-+0x17b5b6ba,
-+0x0db4b6b9,
-+0x05b5bab9,
-+0x00dfebd3,
-+0x00bec4bf,
-+0x00000000,
-+0x00000000,
-+0x00b5b5b5,
-+0x00787878,
-+0x00000000,
-+0x00000000,
-+0x00000000,
-+0x00000000,
-+0x00000000,
-+0x00000000,
-+0x00000000,
-+0x00000000,
-+0x00000000,
-+0x00000000,
-+0x00000000,
-+0x00000000,
-+0x00000000,
-+0x00000000,
-+0x00000000,
-+0x00000000,
-+0x00000000,
-+0x00000000,
-+0x00000000,
-+0x00000000,
-+0x00000000,
-+0x00000000,
-+0x00000000,
-+0x00000000,
-+0x00000000,
-+0x00000000,
-+0x00000000,
-+0x00000000,
-+0x00000000,
-+0x00000000,
-+0x00000000,
-+0x00000000,
-+0x00000000,
-+0x00000000,
-+0x00000000,
-+0x00000000,
-+0x00000000,
-+0x00000000,
-+0x00000000,
-+0x00000000,
-+0x00000000,
-+0x00000000,
-+0x00000000,
-+0x00000000,
-+0x00000000,
-+0x00000000,
-+0x00000000,
-+0x00000000,
-+0x00000000,
-+0x00000000,
-+0x00000000,
-+0x00000000,
-+0x00000000,
-+0x00000000,
-+0x00000000,
-+0x00000000,
-+0x00000000,
-+0x00fefefe,
-+0x00f4f4f3,
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-+0x000055aa,
-+0x00000000,
-+0x00000000,
-+0x00000000,
-+0x00000000,
-+0x00000000,
-+0x00000000,
-+0x00000000,
-+0x00000000,
-+0x00000000,
-+0x00000000,
-+0x00000000,
-+0x002a41c0,
-+0x003625b5,
-+0x0b1a5bab,
-+0xa31b60b1,
-+0xff1a5faf,
-+0xfe1a5ead,
-+0xfe1a5eac,
-+0xfe195dac,
-+0xfe195dac,
-+0xfe195dac,
-+0xfe195dac,
-+0xfe195dab,
-+0xfe195dab,
-+0xfe195dab,
-+0xfe195dab,
-+0xfe195dab,
-+0xfe185cab,
-+0xfe185cab,
-+0xfe185caa,
-+0xfe185caa,
-+0xfe185caa,
-+0xf2185ead,
-+0x5a185eae,
-+0x00ff2ae3,
-+0x00000584,
-+0x00003890,
-+0x00000000,
-+0x00000000,
-+0x00000000,
-+0x00000000,
-+0x00000000,
-+0x00000000,
-+0x00000000,
-+0x00000000,
-+0x00000000,
-+0x00000000,
-+0x00000000,
-+0x00000000,
-+0x00000000,
-+0x00000000,
-+0x00000000,
-+0x00000000,
-+0x00000000,
-+0x00000000,
-+0x00000000,
-+0x00000000,
-+0x00000000,
-+0x00000000,
-+0x00000000,
-+0x00000000,
-+0x00000000,
-+0x00000000,
-+0x00000000,
-+0x00000000,
-+0x00000000,
-+0x00000000,
-+0x00000000,
-+0x00000000,
-+0x00000000,
-+0x00000000,
-+0x00000000,
-+0x00000000,
-+0x00000000,
-+0x00000000,
-+0x001f67b7,
-+0x001f68b8,
-+0x002066ba,
-+0x562065b7,
-+0xe22167bb,
-+0xe62065b9,
-+0xe72066b9,
-+0xe92066b8,
-+0xea2066b8,
-+0xed1f65b7,
-+0xf01f63b6,
-+0xf31e63b5,
-+0xf61e63b4,
-+0xf91e62b4,
-+0xfc1e62b2,
-+0xfe1e61b2,
-+0xfe1d61b2,
-+0xfe1d61b2,
-+0xfe1d61b2,
-+0xff1d62b2,
-+0x811d61b2,
-+0x01004ea8,
-+0x00001882,
-+0x000055aa,
-+0x00000000,
-+0x00000000,
-+0x00000000,
-+0x00000000,
-+0x00000000,
-+0x00000000,
-+0x00000000,
-+0x00000000,
-+0x00000000,
-+0x00000000,
-+0x00000000,
-+0x000000ff,
-+0x00004ab5,
-+0x002e64bc,
-+0x471a5faf,
-+0xed1a60b0,
-+0xff1a5eac,
-+0xfe195dac,
-+0xfe195dac,
-+0xfe195dac,
-+0xfe195dac,
-+0xfe195dac,
-+0xfe195dab,
-+0xfe195dab,
-+0xfe195dab,
-+0xfe195dab,
-+0xfe185cab,
-+0xfd185cab,
-+0xfc185caa,
-+0xfb185caa,
-+0xf9185cab,
-+0xf8185cab,
-+0xf9185dac,
-+0xb9185ead,
-+0x15165ba9,
-+0x003e9289,
-+0x000036bc,
-+0x00000000,
- };
diff --git a/debian/watch b/debian/watch
deleted file mode 100644
index 552b27d..0000000
--- a/debian/watch
+++ /dev/null
@@ -1,5 +0,0 @@
-# format version number, currently 2; this line is compulsory!
-version=2
-
-# This is one format for an HTTP site, which is the same as the FTP format
-http://cran.r-project.org/src/base/R-3/R-([-0-9\.]*).tar.gz
diff --git a/doc/FAQ b/doc/FAQ
index 3ef9a80..f5c5180 100644
--- a/doc/FAQ
+++ b/doc/FAQ
@@ -373,9 +373,9 @@ details.
----------------------------------
The 'bin/macosx' directory of a CRAN site contains a standard Apple
-installer package to run on OS X 10.6 ('Snow Leopard') and later. Once
+installer package to run on OS X 10.9 ('Mavericks') and later. Once
downloaded and executed, the installer will install the current release
-of R and an R.app OS X GUI. This port of R for OS X is maintained by
+of R and R.app, the OS X GUI. This port of R for OS X is maintained by
Simon Urbanek <Simon.Urbanek at R-project.org> (and previously by Stefano
Iacus). The "R for Mac OS X FAQ
(https://CRAN.R-project.org/bin/macosx/RMacOSX-FAQ.html) has more
diff --git a/doc/NEWS b/doc/NEWS
index 339a427..dfe19b5 100644
--- a/doc/NEWS
+++ b/doc/NEWS
@@ -1,5 +1,45 @@
R News
+CHANGES IN R 3.3.1:
+
+ BUG FIXES:
+
+ * R CMD INSTALL and hence install.packages() gave an internal error
+ installing a package called description from a tarball on a
+ case-insensitive file system.
+
+ * match(x, t) (and hence x %in% t) failed when x was of length one,
+ and either character and x and t only differed in their Encoding
+ or when x and t where complex with NAs or NaNs. (PR#16885.)
+
+ * unloadNamespace(ns) also works again when ns is a 'namespace', as
+ from getNamespace().
+
+ * rgamma(1,Inf) or rgamma(1, 0,0) no longer give NaN but the
+ correct limit.
+
+ * length(baseenv()) is correct now.
+
+ * pretty(d, ..) for date-time d rarely failed when "halfmonth" time
+ steps were tried (PR#16923) and on 'inaccurate' platforms such as
+ 32-bit windows or a configuration with --disable-long-double; see
+ comment #15 of PR#16761.
+
+ * In text.default(x, y, labels), the rarely(?) used default for
+ labels is now correct also for the case of a 2-column matrix x
+ and missing y.
+
+ * as.factor(c(a = 1L)) preserves names() again as in R < 3.1.0.
+
+ * strtrim(""[0], 0[0]) now works.
+
+ * Use of Ctrl-C to terminate a reverse incremental search started
+ by Ctrl-R in the readline-based Unix terminal interface is now
+ supported for readline >= 6.3 (Ctrl-G always worked). (PR#16603)
+
+ * diff(<difftime>) now keeps the "units" attribute, as subtraction
+ already did, PR#16940.
+
CHANGES IN R 3.3.0:
SIGNIFICANT USER-VISIBLE CHANGES:
diff --git a/doc/NEWS.Rd b/doc/NEWS.Rd
index 94ecc16..3e19570 100644
--- a/doc/NEWS.Rd
+++ b/doc/NEWS.Rd
@@ -5,6 +5,53 @@
\title{R News}
\encoding{UTF-8}
+\section{\Rlogo CHANGES IN R 3.3.1}{
+ \subsection{BUG FIXES}{
+ \itemize{
+ \item \command{R CMD INSTALL} and hence \code{install.packages()}
+ gave an internal error installing a package called
+ \pkg{description} from a tarball on a case-insensitive file system.
+
+ \item \code{match(x, t)} (and hence \code{x \%in\% t}) failed
+ when \code{x} was of length one, and either \code{character} and \code{x}
+ and \code{t} only differed in their \code{Encoding} or when
+ \code{x} and \code{t} where \code{complex} with \code{NA}s or \code{NaN}s.
+ (\PR{16885}.)
+
+ \item \code{unloadNamespace(ns)} also works again when \code{ns} is a
+ \sQuote{namespace}, as from \code{getNamespace()}.
+
+ \item \code{rgamma(1,Inf)} or \code{rgamma(1, 0,0)} no longer give
+ \code{NaN} but the correct limit.
+
+ \item \code{length(baseenv())} is correct now.
+
+ \item \code{pretty(d, ..)} for date-time \code{d} rarely failed
+ when \code{"halfmonth"} time steps were tried (\PR{16923}) and
+ on \sQuote{inaccurate} platforms such as 32-bit windows or
+ a configuration with \command{--disable-long-double}; see comment
+ #15 of \PR{16761}.
+
+ \item In \code{text.default(x, y, labels)}, the rarely(?) used
+ default for \code{labels} is now correct also for the case of a
+ 2-column matrix \code{x} and missing \code{y}.
+
+ \item \code{as.factor(c(a = 1L))} preserves \code{names()} again
+ as in \R < 3.1.0.
+
+ \item \code{strtrim(""[0], 0[0])} now works.
+
+ \item Use of \code{Ctrl-C} to terminate a reverse incremental
+ search started by \code{Ctrl-R} in the \code{readline}-based Unix
+ terminal interface is now supported for \code{readline} >= 6.3
+ (\code{Ctrl-G} always worked). (\PR{16603})
+
+ \item \code{diff(<difftime>)} now keeps the \code{"units"}
+ attribute, as subtraction already did, \PR{16940}.
+ }
+ }
+}
+
\section{\Rlogo CHANGES IN R 3.3.0}{
\subsection{SIGNIFICANT USER-VISIBLE CHANGES}{
\itemize{
@@ -324,7 +371,7 @@
\item \code{gzcon()} gains a new option \code{text}, which marks
the connection as text-oriented (so e.g.\sspace{}\code{pushBack()}
works). It is still always opened in binary mode.
-
+
\item The \code{import()} namespace directive now accepts an
argument \code{except} which names symbols to exclude from the
imports. The \code{except} expression should evaluate to a
@@ -576,7 +623,7 @@
\item \code{install.packages()} could give false errors when
\code{options("pkgType")} was \code{"binary"}. (Reported by
Jose Claudio Faria.)
-
+
\item A bug fix in \R 3.0.2 fixed problems with \code{locator()}
in X11, but introduced problems in Windows. Now both should be
fixed. (\PR{15700})
@@ -584,7 +631,7 @@
\item \code{download.file()} with \code{method = "wininet"}
incorrectly warned of download file length difference when
reported length was unknown. (\PR{16805})
-
+
\item \code{diag(NULL, 1)} crashed because of missed type
checking. (\PR{16853})
}
diff --git a/doc/NEWS.pdf b/doc/NEWS.pdf
index 996a894..a9565e6 100644
Binary files a/doc/NEWS.pdf and b/doc/NEWS.pdf differ
diff --git a/doc/html/NEWS.html b/doc/html/NEWS.html
index 0f390ea..5ac5317 100644
--- a/doc/html/NEWS.html
+++ b/doc/html/NEWS.html
@@ -7,6 +7,70 @@
<h2>R News</h2>
+<h3><img src="../help/figures/../../html/Rlogo.svg" class="toplogo" alt="[R logo]" /> CHANGES IN R 3.3.1</h3>
+
+
+
+<h4>BUG FIXES</h4>
+
+
+<ul>
+<li> <p><code>R CMD INSTALL</code> and hence <code>install.packages()</code>
+gave an internal error installing a package called
+<span class="pkg">description</span> from a tarball on a case-insensitive file system.
+</p>
+</li>
+<li> <p><code>match(x, t)</code> (and hence <code>x %in% t</code>) failed
+when <code>x</code> was of length one, and either <code>character</code> and <code>x</code>
+and <code>t</code> only differed in their <code>Encoding</code> or when
+<code>x</code> and <code>t</code> where <code>complex</code> with <code>NA</code>s or <code>NaN</code>s.
+(<a href="https://bugs.R-project.org/bugzilla3/show_bug.cgi?id=16885">PR#16885</a>.)
+</p>
+</li>
+<li> <p><code>unloadNamespace(ns)</code> also works again when <code>ns</code> is a
+‘namespace’, as from <code>getNamespace()</code>.
+</p>
+</li>
+<li> <p><code>rgamma(1,Inf)</code> or <code>rgamma(1, 0,0)</code> no longer give
+<code>NaN</code> but the correct limit.
+</p>
+</li>
+<li> <p><code>length(baseenv())</code> is correct now.
+</p>
+</li>
+<li> <p><code>pretty(d, ..)</code> for date-time <code>d</code> rarely failed
+when <code>"halfmonth"</code> time steps were tried (<a href="https://bugs.R-project.org/bugzilla3/show_bug.cgi?id=16923">PR#16923</a>) and
+on ‘inaccurate’ platforms such as 32-bit windows or
+a configuration with <code>--disable-long-double</code>; see comment
+#15 of <a href="https://bugs.R-project.org/bugzilla3/show_bug.cgi?id=16761">PR#16761</a>.
+</p>
+</li>
+<li><p> In <code>text.default(x, y, labels)</code>, the rarely(?) used
+default for <code>labels</code> is now correct also for the case of a
+2-column matrix <code>x</code> and missing <code>y</code>.
+</p>
+</li>
+<li> <p><code>as.factor(c(a = 1L))</code> preserves <code>names()</code> again
+as in <span style="font-family: Courier New, Courier; color: #666666;"><b>R</b></span> < 3.1.0.
+</p>
+</li>
+<li> <p><code>strtrim(""[0], 0[0])</code> now works.
+</p>
+</li>
+<li><p> Use of <code>Ctrl-C</code> to terminate a reverse incremental
+search started by <code>Ctrl-R</code> in the <code>readline</code>-based Unix
+terminal interface is now supported for <code>readline</code> >= 6.3
+(<code>Ctrl-G</code> always worked). (<a href="https://bugs.R-project.org/bugzilla3/show_bug.cgi?id=16603">PR#16603</a>)
+</p>
+</li>
+<li> <p><code>diff(<difftime>)</code> now keeps the <code>"units"</code>
+attribute, as subtraction already did, <a href="https://bugs.R-project.org/bugzilla3/show_bug.cgi?id=16940">PR#16940</a>.
+</p>
+</li></ul>
+
+
+
+
<h3><img src="../help/figures/../../html/Rlogo.svg" class="toplogo" alt="[R logo]" /> CHANGES IN R 3.3.0</h3>
diff --git a/doc/html/R-admin.html b/doc/html/R-admin.html
index 83d45c5..3355ed7 100644
--- a/doc/html/R-admin.html
+++ b/doc/html/R-admin.html
@@ -1,6 +1,6 @@
<!DOCTYPE html PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN" "http://www.w3.org/TR/html4/loose.dtd">
<html>
-<!-- This manual is for R, version 3.3.0 (2016-05-03).
+<!-- This manual is for R, version 3.3.1 (2016-06-21).
Copyright (C) 2001-2016 R Core Team
@@ -333,7 +333,7 @@ p {
<p>This is a guide to installation and administration for R.
</p>
-<p>This manual is for R, version 3.3.0 (2016-05-03).
+<p>This manual is for R, version 3.3.1 (2016-06-21).
</p>
<p>Copyright © 2001–2016 R Core Team
</p>
@@ -926,13 +926,13 @@ specified on the <code>make install</code> command line (at least for
<code>libdir</code>. The C header files can be installed to the value of
<code>rincludedir</code>: note that as the headers are not installed into a
subdirectory you probably want something like
-<code>rincludedir=/usr/local/include/R-3.3.0</code>.
+<code>rincludedir=/usr/local/include/R-3.3.1</code>.
</p>
<p>If you want the R home to be something other than
<samp><var>libdir</var>/R</samp>, use <samp>rhome</samp>: for example
</p>
<div class="example">
-<pre class="example">make install rhome=/usr/local/lib64/R-3.3.0
+<pre class="example">make install rhome=/usr/local/lib64/R-3.3.1
</pre></div>
<p>will use a version-specific R home on a non-Debian Linux 64-bit
@@ -1316,10 +1316,12 @@ from <acronym>CRAN</acronym> to run on 32- or 64-bit Windows (XP or later) on
‘<samp>ix86</samp>’ and ‘<samp>x86_64</samp>’ <acronym>CPU</acronym>s.
</p>
<p>Your file system must allow long file names (as is likely except
-perhaps for some network-mounted systems).
+perhaps for some network-mounted systems). If it doesn’t also support
+conversion to short name equivalents (a.k.a. DOS 8.3 names), then R
+<em>must</em> be installed in a path that does not contain spaces.
</p>
<p>Installation is <em>via</em> the installer
-<samp>R-3.3.0-win.exe</samp>. Just double-click on the icon and
+<samp>R-3.3.1-win.exe</samp>. Just double-click on the icon and
follow the instructions. When installing on a 64-bit version of Windows
the options will include 32- or 64-bit versions of R (and the default is
to install both). You can uninstall R from the Control Panel.
@@ -1386,12 +1388,12 @@ will call this directory <samp><var>R_HOME</var></samp> below.
<p>You need to collect the following sets of files:
</p><ul>
-<li> Get the R source code tarball <samp>R-3.3.0.tar.gz</samp> from
+<li> Get the R source code tarball <samp>R-3.3.1.tar.gz</samp> from
<acronym>CRAN</acronym>. Open a command window (or another shell) at directory
<var>R_HOME</var>, and run
<div class="example">
-<pre class="example">tar -xf R-3.3.0.tar.gz
+<pre class="example">tar -xf R-3.3.1.tar.gz
</pre></div>
<p>to create the source tree in <var>R_HOME</var>. <strong>Beware</strong>: do use
@@ -1400,7 +1402,7 @@ If you are using an account with administrative privileges you may get a
lot of messages which can be suppressed by
</p>
<div class="example">
-<pre class="example">tar --no-same-owner -xf R-3.3.0.tar.gz
+<pre class="example">tar --no-same-owner -xf R-3.3.1.tar.gz
</pre></div>
<a name="index-TAR_005fOPTIONS-1"></a>
@@ -1717,7 +1719,7 @@ source tree) in <samp>src/gnuwin32/installer</samp> run
installation (in double quotes if it contains spaces or backslashes).
</p>
<p>Both methods create an executable with a standard name such as
-<samp>R-3.3.0-win.exe</samp>, so please rename it to indicate that
+<samp>R-3.3.1-win.exe</samp>, so please rename it to indicate that
it is customized. If you intend to <em>distribute</em> a customized
installer please do check that license requirements are met – note that
the installer will state that the contents are distributed under GPL
@@ -1776,21 +1778,21 @@ make msi
</pre></div>
<p>which will result in a file with a name like
-<samp>R-3.3.0-win32.msi</samp>. This can be double-clicked to be
+<samp>R-3.3.1-win32.msi</samp>. This can be double-clicked to be
installed, but those who need it will know what to do with it (usually
by running <code>msiexec /i</code> with additional options). Properties
that users might want to set from the <code>msiexec</code> command line
include ‘<samp>ALLUSERS</samp>’, ‘<samp>INSTALLDIR</samp>’ (something like
-<samp>c:\Program Files\R\R-3.3.0</samp>) and ‘<samp>RMENU</samp>’ (the path
+<samp>c:\Program Files\R\R-3.3.1</samp>) and ‘<samp>RMENU</samp>’ (the path
to the ‘<samp>R</samp>’ folder on the start menu) and ‘<samp>STARTDIR</samp>’ (the
starting directory for R shortcuts, defaulting to something like
<samp>c:\Users\name\Documents\R</samp>).
</p>
<p>The MSI installer can be built both from a 32-bit build of R
-(<samp>R-3.3.0-win32.msi</samp>) and from a 64-bit build of R
-(<samp>R-3.3.0-win64.msi</samp>, optionally including 32-bit files
+(<samp>R-3.3.1-win32.msi</samp>) and from a 64-bit build of R
+(<samp>R-3.3.1-win64.msi</samp>, optionally including 32-bit files
by setting the macro <code>HOME32</code>, when the name is
-<samp>R-3.3.0-win.msi</samp>). Unlike the main installer, a 64-bit
+<samp>R-3.3.1-win.msi</samp>). Unlike the main installer, a 64-bit
MSI installer can only be run on 64-bit Windows.
</p>
<p>Thanks to David del Campo (Dept of Statistics, University of Oxford)
@@ -1858,7 +1860,7 @@ Windows’ CRLF line endings.
<p>The front page of a <acronym>CRAN</acronym> site has a link ‘Download R for OS
-X’. Click on that, then download the file <samp>R-3.3.0.pkg</samp>
+X’. Click on that, then download the file <samp>R-3.3.1.pkg</samp>
and install it. This runs on OS X 10.9 and later (Mavericks, Yosemite,
El Capitan, …).
</p>
@@ -2329,8 +2331,8 @@ using the <code>make</code> variables <code>BINPREF</code> (and in some cases
<code>BINPREF64</code>). The library location is set using <code>make</code>
variable <code>LOCAL_SOFT</code>, to give an equivalent of <samp>/usr/local</samp>
on a Unix-alike. All of these can be set in
-<samp>src/gnuwin/MkRules.local</samp> when R is built from sources (see
-the comments in <samp>src/gnuwin/MkRules.dist</samp>), or in
+<samp>src/gnuwin32/MkRules.local</samp> when R is built from sources (see
+the comments in <samp>src/gnuwin32/MkRules.dist</samp>), or in
file<a name="DOCF18" href="#FOOT18"><sup>18</sup></a>
<samp>etc/i386/Makeconf</samp> or <samp>etc/x64/Makeconf</samp> for an installed
version of R. In the latter case only <code>BINPREF</code> is used, with
@@ -3284,9 +3286,10 @@ really do not want these you will need to explicitly configure R
without X11, using <samp>--with-x=no</samp>.
</p>
<p>The command-line editing (and command completion) depends on the
-<acronym>GNU</acronym> <code>readline</code> library: version 4.2 or later is needed
-for all the features to be enabled. Otherwise you will need to
-configure with <samp>--with-readline=no</samp> (or equivalent).
+<acronym>GNU</acronym> <code>readline</code> library (including its headers): version
+4.2 or later is needed for all the features to be enabled. Otherwise
+you will need to configure with <samp>--with-readline=no</samp> (or
+equivalent).
</p>
<p>A suitably comprehensive <code>iconv</code> function is essential. The R
usage requires <code>iconv</code> to be able to translate between
@@ -4826,12 +4829,10 @@ offer the installation of the command-line tools. If you have installed
Xcode, this provides the command-line tools. The tools will need to be
reinstalled when OS X is upgraded, as upgrading partially removes them.)
</p>
-<p>You need <code>readline</code> (or to configure using
-<samp>--without-readline</samp>), and a Fortran compiler. Those and other
-binary components are available from
-<a href="https://r.research.att.com/libs">https://r.research.att.com/libs</a>: you are likely to need
-<code>pcre</code> and <code>xz</code> (recent OS X provides libs but not headers for
-these).
+<p>You need <code>readline</code><a name="DOCF55" href="#FOOT55"><sup>55</sup></a> and a Fortran compiler. Those and other binary
+components are available from <a href="https://r.research.att.com/libs">https://r.research.att.com/libs</a>:
+you are likely to need <code>pcre</code> and <code>xz</code> (recent OS X provides
+libraries but not headers for these).
</p>
<p>An X sub-system is required unless configuring using
<samp>--without-x</samp>: see <a href="https://xquartz.macosforge.org/">https://xquartz.macosforge.org/</a>.
@@ -4840,7 +4841,7 @@ these).
<samp>--with-aqua</samp> (which is the default): <code>quartz()</code> then
becomes the default device when running R at the console and X11
would only be used for the command-line-R data editor/viewer and one
-version of Tcl/Tk. (This needs an Objective-C compiler<a name="DOCF55" href="#FOOT55"><sup>55</sup></a> which can compile the source code of
+version of Tcl/Tk. (This needs an Objective-C compiler<a name="DOCF56" href="#FOOT56"><sup>56</sup></a> which can compile the source code of
<code>quartz()</code>.)
</p>
<p>Use <samp>--without-aqua</samp> if you want a standard Unix-alike build:
@@ -4866,7 +4867,7 @@ FCFLAGS=$F77FLAGS
<p>with <code>clang</code> and <code>clang++</code> from the ‘Command Line
Tools’ and the Fortran compiler from
-<a href="https://r.research.att.com/libs/gfortran-4.8.2-darwin13.tar.bz2">https://r.research.att.com/libs/gfortran-4.8.2-darwin13.tar.bz2</a>.<a name="DOCF56" href="#FOOT56"><sup>56</sup></a>
+<a href="https://r.research.att.com/libs/gfortran-4.8.2-darwin13.tar.bz2">https://r.research.att.com/libs/gfortran-4.8.2-darwin13.tar.bz2</a>.<a name="DOCF57" href="#FOOT57"><sup>57</sup></a>
</p>
<p>Other builds of <code>gfortran</code> are available: see
<a href="https://gcc.gnu.org/wiki/GFortranBinaries">https://gcc.gnu.org/wiki/GFortranBinaries</a> and
@@ -4877,7 +4878,7 @@ or path in a personal or site <samp>Makevars</samp> file (see <a href="#Customiz
<p>More recent and complete distributions of <code>clang</code> are usually
available from <a href="http://llvm.org/releases/">http://llvm.org/releases/</a>. In particular, these
include support for the ‘Address Sanitizer’ (not included by Apple until
-Xcode 7) and for OpenMP<a name="DOCF57" href="#FOOT57"><sup>57</sup></a> in version 3.7.0 and later.
+Xcode 7) and for OpenMP<a name="DOCF58" href="#FOOT58"><sup>58</sup></a> in version 3.7.0 and later.
</p>
<p>Pre-compiled versions of many of the <a href="#Useful-libraries-and-programs">Useful libraries and programs</a>
are available from <a href="https://r.research.att.com/libs/">https://r.research.att.com/libs/</a>. You will
@@ -4909,7 +4910,7 @@ Otherwise the binary libraries at
</pre></div>
<p>to provide potentially higher-performance versions of the <acronym>BLAS</acronym>
-and LAPACK routines.<a name="DOCF58" href="#FOOT58"><sup>58</sup></a>
+and LAPACK routines.<a name="DOCF59" href="#FOOT59"><sup>59</sup></a>
</p>
<p>Looking at the top of
<samp>/Library/Frameworks/R.framework/Resources/etc/Makeconf</samp>
@@ -5020,7 +5021,7 @@ tclvalue(.Tcl("tk windowingsystem")) # "x11" or "aqua&
<a name="Java"></a>
<h4 class="subsection">C.3.3 Java</h4>
-<p>The situation with Java support on OS X is messy.<a name="DOCF59" href="#FOOT59"><sup>59</sup></a>
+<p>The situation with Java support on OS X is messy.<a name="DOCF60" href="#FOOT60"><sup>60</sup></a>
</p>
<p>OS X no longer comes with an installed Java runtime (JRE), and an OS X
upgrade removes one if already installed: it is intended to be installed
@@ -5030,7 +5031,7 @@ should prompt you to install it. You can also install directly the
latest Java from Oracle (currently from
<a href="http://www.oracle.com/technetwork/java/javase/downloads/index.html">http://www.oracle.com/technetwork/java/javase/downloads/index.html</a>).
</p>
-<p>You may need to install what Apple calls ‘legacy Java’<a name="DOCF60" href="#FOOT60"><sup>60</sup></a> to suppress pop-up messages
+<p>You may need to install what Apple calls ‘legacy Java’<a name="DOCF61" href="#FOOT61"><sup>61</sup></a> to suppress pop-up messages
even if you have a current version installed.
</p>
<p>To see what compatible versions of Java are currently installed, run
@@ -5186,7 +5187,7 @@ option <samp>--with-internal-tzcode</samp> is recommended, and required if
you find time-zone abbreviations being given odd values (as has been
seen on 64-bit builds without it).
</p>
-<p>When using the Oracle compilers<a name="DOCF61" href="#FOOT61"><sup>61</sup></a> do <em>not</em> specify <samp>-fast</samp>, as this
+<p>When using the Oracle compilers<a name="DOCF62" href="#FOOT62"><sup>62</sup></a> do <em>not</em> specify <samp>-fast</samp>, as this
disables <acronym>IEEE</acronym> arithmetic and <code>make check</code> will fail.
</p>
<p>It has been reported that some Solaris installations need
@@ -5663,7 +5664,7 @@ will not need to build add-on packages from source; see <a href="#Add_002don-pac
</p>
<p>We have found that the build process for R is quite sensitive to
the choice of tools: please follow our instructions <strong>exactly</strong>,
-even to the choice of particular versions of the tools.<a name="DOCF62" href="#FOOT62"><sup>62</sup></a> The build process for add-on packages is somewhat more
+even to the choice of particular versions of the tools.<a name="DOCF63" href="#FOOT63"><sup>63</sup></a> The build process for add-on packages is somewhat more
forgiving, but we recommend using the exact toolset at first, and only
substituting other tools once you are familiar with the process.
</p>
@@ -5716,7 +5717,7 @@ use filepaths containing spaces: you can always use the short forms
<p>It is essential that the directory containing the command line tools
comes first or second in the path: there are typically like-named
-tools<a name="DOCF63" href="#FOOT63"><sup>63</sup></a> in other directories, and they will <strong>not</strong>
+tools<a name="DOCF64" href="#FOOT64"><sup>64</sup></a> in other directories, and they will <strong>not</strong>
work. The ordering of the other directories is less important, but if in
doubt, use the order above.
</p>
@@ -5765,7 +5766,7 @@ install LaTeX packages on first use.
<a name="The-Inno-Setup-installer-1"></a>
<h3 class="section">D.2 The Inno Setup installer</h3>
-<p>To make the installer package (<samp>R-3.3.0-win.exe</samp>) we
+<p>To make the installer package (<samp>R-3.3.1-win.exe</samp>) we
currently require the Unicode version of Inno Setup 5.3.7 or later from
<a href="http://jrsoftware.org/">http://jrsoftware.org/</a>. This is <em>not</em> included in
<samp>Rtools*.exe</samp>.
@@ -5823,7 +5824,7 @@ project’s runtime.
</p>
<p>This toolchain uses <em>multilib</em>: that is there is a single front-end
such as <code>gcc.exe</code> for each of the compilers and 32-bit (the
-default) and 64-bit compilation are selected by the flags<a name="DOCF64" href="#FOOT64"><sup>64</sup></a> <samp>-m32</samp> and <samp>-m64</samp>
+default) and 64-bit compilation are selected by the flags<a name="DOCF65" href="#FOOT65"><sup>65</sup></a> <samp>-m32</samp> and <samp>-m64</samp>
respectively. The tools are all 32-bit Windows executables and should
be able to run on any current version of Windows—however you do need a
64-bit version of Windows to build 64-bit R as the build process runs
@@ -6394,38 +6395,43 @@ which is usually distributed separately, e.g. at
<p>It will be necessary to
install later versions of software such as <code>libcurl</code>.</p>
<h3><a name="FOOT55" href="#DOCF55">(55)</a></h3>
+<p>Apple provides a partial emulation of
+GNU readline 4.2 based on the NetBSD <code>editline</code> library. That is
+not recommended but for the time being R’s installation scripts will
+make use of it.</p>
+<h3><a name="FOOT56" href="#DOCF56">(56)</a></h3>
<p>These
days that is defined by Apple’s implementation of <code>clang</code>, so it is
strongly recommended to use that.</p>
-<h3><a name="FOOT56" href="#DOCF56">(56)</a></h3>
+<h3><a name="FOOT57" href="#DOCF57">(57)</a></h3>
<p>This
is a tarball which needs to be unpacked in the Terminal by e.g.
<code>sudo tar -zxf gfortran-4.8.2-darwin13.tar.bz2 -C /</code>. It does
not run on Core 2 Duo Macs.</p>
-<h3><a name="FOOT57" href="#DOCF57">(57)</a></h3>
+<h3><a name="FOOT58" href="#DOCF58">(58)</a></h3>
<p>This also needs the OpenMP runtime,
which is distributed separately at that site.</p>
-<h3><a name="FOOT58" href="#DOCF58">(58)</a></h3>
+<h3><a name="FOOT59" href="#DOCF59">(59)</a></h3>
<p>It is reported that for some non-Apple
toolchains <code>CPPFLAGS</code> needed to contain <code>-D__ACCELERATE__</code>.</p>
-<h3><a name="FOOT59" href="#DOCF59">(59)</a></h3>
+<h3><a name="FOOT60" href="#DOCF60">(60)</a></h3>
<p>For more
details see <a href="http://www.macstrategy.com/article.php?3">http://www.macstrategy.com/article.php?3</a>.</p>
-<h3><a name="FOOT60" href="#DOCF60">(60)</a></h3>
+<h3><a name="FOOT61" href="#DOCF61">(61)</a></h3>
<p>e.g.
<code>Java For OS X 2015-001</code> from
<a href="https://support.apple.com/kb/DL1572">https://support.apple.com/kb/DL1572</a>.</p>
-<h3><a name="FOOT61" href="#DOCF61">(61)</a></h3>
+<h3><a name="FOOT62" href="#DOCF62">(62)</a></h3>
<p>including <code>gcc</code> for
Sparc from Oracle.</p>
-<h3><a name="FOOT62" href="#DOCF62">(62)</a></h3>
+<h3><a name="FOOT63" href="#DOCF63">(63)</a></h3>
<p>For
example, the Cygwin version of <code>make 3.81</code> fails to work
correctly.</p>
-<h3><a name="FOOT63" href="#DOCF63">(63)</a></h3>
+<h3><a name="FOOT64" href="#DOCF64">(64)</a></h3>
<p>such as <code>sort</code>, <code>find</code> and perhaps
<code>make</code>.</p>
-<h3><a name="FOOT64" href="#DOCF64">(64)</a></h3>
+<h3><a name="FOOT65" href="#DOCF65">(65)</a></h3>
<p>these
flags apply to the compilers: some of the tools use different flags.
32-bit builds are the default.</p>
diff --git a/doc/manual/R-FAQ.texi b/doc/manual/R-FAQ.texi
index e4e826e..abb6dc1 100644
--- a/doc/manual/R-FAQ.texi
+++ b/doc/manual/R-FAQ.texi
@@ -473,9 +473,9 @@ See the @url{https://CRAN.R-project.org/bin/windows/base/@/rw-FAQ.html,
@subsection How can R be installed (Mac)
The @file{bin/macosx} directory of a @CRAN{} site contains a standard
-Apple installer package to run on OS X 10.6 (`Snow Leopard') and later.
+Apple installer package to run on OS X 10.9 (`Mavericks') and later.
Once downloaded and executed, the installer will install the current
-release of R and an R.app OS X @acronym{GUI}. This port of R for OS X
+release of R and R.app, the OS X @acronym{GUI}. This port of R for OS X
is maintained by @email{Simon.Urbanek@@R-project.org, Simon Urbanek}
(and previously by Stefano Iacus). The
@url{https://CRAN.R-project.org/bin/macosx/RMacOSX-FAQ.html, ``R for Mac
diff --git a/doc/manual/R-admin.texi b/doc/manual/R-admin.texi
index b129a3e..271abb6 100644
--- a/doc/manual/R-admin.texi
+++ b/doc/manual/R-admin.texi
@@ -1075,7 +1075,9 @@ from @acronym{CRAN} to run on 32- or 64-bit Windows (XP or later) on
@cputype{ix86} and @cputype{x86_64} @acronym{CPU}s.
Your file system must allow long file names (as is likely except
-perhaps for some network-mounted systems).
+perhaps for some network-mounted systems). If it doesn't also support
+conversion to short name equivalents (a.k.a. DOS 8.3 names), then R
+ at emph{must} be installed in a path that does not contain spaces.
Installation is @emph{via} the installer
@file{@value{RWVERSION}-win.exe}. Just double-click on the icon and
@@ -2153,8 +2155,8 @@ using the @command{make} variables @code{BINPREF} (and in some cases
@code{BINPREF64}). The library location is set using @command{make}
variable @code{LOCAL_SOFT}, to give an equivalent of @file{/usr/local}
on a Unix-alike. All of these can be set in
- at file{src/gnuwin/MkRules.local} when @R{} is built from sources (see
-the comments in @file{src/gnuwin/MkRules.dist}), or in
+ at file{src/gnuwin32/MkRules.local} when @R{} is built from sources (see
+the comments in @file{src/gnuwin32/MkRules.dist}), or in
file at footnote{or by adding it in a file such as
@file{etc/i386/Makevars.site}, which does not exist by default.}
@file{etc/i386/Makeconf} or @file{etc/x64/Makeconf} for an installed
@@ -3144,9 +3146,10 @@ really do not want these you will need to explicitly configure @R{}
without X11, using @option{--with-x=no}.
The command-line editing (and command completion) depends on the
- at acronym{GNU} @code{readline} library: version 4.2 or later is needed
-for all the features to be enabled. Otherwise you will need to
-configure with @option{--with-readline=no} (or equivalent).
+ at acronym{GNU} @code{readline} library (including its headers): version
+4.2 or later is needed for all the features to be enabled. Otherwise
+you will need to configure with @option{--with-readline=no} (or
+equivalent).
A suitably comprehensive @code{iconv} function is essential. The @R{}
usage requires @code{iconv} to be able to translate between
@@ -4725,12 +4728,13 @@ offer the installation of the command-line tools. If you have installed
Xcode, this provides the command-line tools. The tools will need to be
reinstalled when OS X is upgraded, as upgrading partially removes them.)
-You need @code{readline} (or to configure using
- at option{--without-readline}), and a Fortran compiler. Those and other
-binary components are available from
- at uref{https://r.research.att.com/libs}: you are likely to need
- at code{pcre} and @code{xz} (recent OS X provides libs but not headers for
-these).
+You need @code{readline}@footnote{Apple provides a partial emulation of
+GNU readline 4.2 based on the NetBSD @code{editline} library. That is
+not recommended but for the time being @R{}'s installation scripts will
+make use of it.} and a Fortran compiler. Those and other binary
+components are available from @uref{https://r.research.att.com/libs}:
+you are likely to need @code{pcre} and @code{xz} (recent OS X provides
+libraries but not headers for these).
An X sub-system is required unless configuring using
@option{--without-x}: see @uref{https://xquartz.macosforge.org/}.
diff --git a/doc/manual/R-intro.texi b/doc/manual/R-intro.texi
index 478ebbc..393309c 100644
--- a/doc/manual/R-intro.texi
+++ b/doc/manual/R-intro.texi
@@ -7536,9 +7536,12 @@ Windows versions of @R{} have somewhat simpler command-line editing: see
file @file{README.Rterm} for command-line editing under
@code{Rterm.exe}.
-When using @R{} with @strong{readline} capabilities, the functions
-described below are available, as well as others (probably) documented
-in @command{man readline} or @command{info readline} on your system.
+When using @R{} with GNU at footnote{It is possible to build @R{} using an
+emulation of GNU @strong{readline}, such as one based on NetBSD's
+ at strong{editline}, it which case only a subset of the capabilities may
+be provided.} @strong{readline} capabilities, the functions described
+below are available, as well as others (probably) documented in
+ at command{man readline} or @command{info readline} on your system.
Many of these use either Control or Meta characters. Control
characters, such as @kbd{Control-m}, are obtained by holding the
@@ -7554,6 +7557,10 @@ type @key{ESC}@key{b}. The @kbd{ESC} character sequences are also
allowed on terminals with real Meta keys. Note that case is significant
for Meta characters.
+Some but not all versions at footnote{In particular, not versions 6.3 or
+later: this is worked around as from @R{} 3.4.0.} of @strong{readline}
+will recognize resizing of the terminal window so this is best avoided.
+
@appendixsection Editing actions
The @R{} program keeps a history of the command lines you type,
@@ -7583,7 +7590,8 @@ Go to the previous command (backwards in the history).
@item C-n
Go to the next command (forwards in the history).
@item C-r @var{text}
-Find the last command with the @var{text} string in it.
+Find the last command with the @var{text} string in it. This can be
+cancelled by @code{C-g} (and on some versions of @R{} by @code{C-c}).
@end table
On most terminals, you can also use the up and down arrow keys instead
diff --git a/doc/manual/R-ints.texi b/doc/manual/R-ints.texi
index 0be730f..edfa351 100644
--- a/doc/manual/R-ints.texi
+++ b/doc/manual/R-ints.texi
@@ -611,7 +611,7 @@ which is traversed once the search reaches the global environment.
@cindex namespace
Namespaces are environments associated with packages (and once again
the base package is special and will be considered separately). A
-package @code{@var{pkg}} with a namespace defines two environments
+package @code{@var{pkg}} defines two environments
@code{namespace:@var{pkg}} and @code{package:@var{pkg}}: it is
@code{package:@var{pkg}} that can be @code{attach}ed and form part of
the search path.
@@ -1428,20 +1428,20 @@ objects without needing to know their internal `metaname' (although
@node S4 methods, Mechanics of S4 dispatch, S4 classes, S4 objects
@subsection S4 methods
-Details of methods are stored in S4 objects of class
- at code{"MethodsList"}. They have a non-syntactic name of the form
- at code{.__M__ at var{generic}:@var{package}} for all methods defined in the
-current environment for the named generic derived from a specific
-package (which might be @code{.GlobalEnv}).
+Details of the methods are stored in environments (typically hidden in the
+respective namespace) with a non-syntactic name of the form
+ at code{.__T__ at var{generic}:@var{package}} containing objects of class
+ at code{MethodDefinition} for all methods defined in the current environment
+for the named generic derived from a specific package (which might be @code{.GlobalEnv}).
+This is sometimes referred to as a `methods table'.
-There is also environment @code{.__T__ at var{generic}:@var{package}} which
-has names the signatures of the methods defined, and values the
-corresponding method functions. This is often referred to as a `methods
-table'.
-
-When a package without a namespace is attached these objects become
-visible on the search path. @code{library} calls
- at code{methods:::cacheMetaData} to update the internal tables.
+For example,
+ at example
+ length(nM <- asNamespace("Matrix") ) # 941 for Matrix 1.2-6
+ length(meth <- grep("^[.]__T__", names(nM), value=TRUE))# 107 generics with methods
+ length(meth.Ops <- nM$`.__T__Ops:base`) # 71 methods for the 'Ops' (group)generic
+ head(sort(names(meth.Ops))) ## "abIndex#abIndex" ... "ANY#ddiMatrix" "ANY#ldiMatrix" "ANY#Matrix"
+ at end example
During an @R{} session there is an environment associated with each
non-primitive generic containing objects @code{.AllMTable},
@@ -1456,8 +1456,8 @@ directive @code{exportMethods} will export all the methods defined in
the namespace for a specified generic: the code also adds to the list
of generics any that are exported directly. For generics which are
listed via @code{exportMethods} or exported themselves, the
-corresponding @code{"MethodsList"} and environment are exported and so
-will appear (as hidden objects) in the package environment.
+corresponding environment is exported and so
+will appear (as hidden object) in the package environment.
Methods for primitives which are internally S4 generic (see below) are
always exported, whether mentioned in the @file{NAMESPACE} file or not.
@@ -1471,7 +1471,7 @@ methods defined on generics in other packages. Since methods for a
generic could be imported from several different packages, the methods
tables are merged.
-When a package with a namespace is attached
+When a package is attached
@code{methods:::cacheMetaData} is called to update the internal tables:
only the visible methods will be cached.
@@ -1495,7 +1495,7 @@ space there will be two functions called @code{myfn} on the search
paths, and which will be called depends on which search path is in use.
This is starkest for functions in the base namespace, where the
original will be found ahead of the newly created function from any
-other package with a namespace.
+other package.
Primitive functions are treated quite differently, for efficiency
reasons: this results in different semantics. @code{setGeneric} is
diff --git a/share/texmf/bibtex/bib/RJournal.bib b/share/texmf/bibtex/bib/RJournal.bib
index 7d5ee2e..b7f3da2 100644
--- a/share/texmf/bibtex/bib/RJournal.bib
+++ b/share/texmf/bibtex/bib/RJournal.bib
@@ -238,6 +238,84 @@
+ at Article{beath:,
+ author = {Dr Ken J. Beath},
+ title = {metaplus: An R Package for the Analysis of Robust Meta-Analysis and Meta-Regression},
+ journal = {The R Journal},
+ year = ,
+ volume = ,
+ number = ,
+ pages = {},
+ month = ,
+ url = {http://journal.r-project.org/archive/-/beath.pdf}
+
+
+
+ at Article{leeper:,
+ author = {Thomas J. Leeper},
+ title = {Crowdsourced Data Preprocessing with R and Amazon Mechanical Turk},
+ journal = {The R Journal},
+ year = ,
+ volume = ,
+ number = ,
+ pages = {},
+ month = ,
+ url = {http://journal.r-project.org/archive/-/leeper.pdf}
+
+
+
+ at Article{na-pebesma-heuvelink:,
+ author = {Benedikt Gräler and Edzer Pebesma and Gerard Heuvelink},
+ title = {Spatio-Temporal Geostatistics using gstat},
+ journal = {The R Journal},
+ year = ,
+ volume = ,
+ number = ,
+ pages = {},
+ month = ,
+ url = {http://journal.r-project.org/archive/-/na-pebesma-heuvelink.pdf}
+
+
+
+ at Article{keyes-rudis-jacobs:,
+ author = {Oliver Keyes and Bob Rudis and Jay Jacobs},
+ title = {R Packages to Aid in Handling Web Access Logs},
+ journal = {The R Journal},
+ year = ,
+ volume = ,
+ number = ,
+ pages = {},
+ month = ,
+ url = {http://journal.r-project.org/archive/-/keyes-rudis-jacobs.pdf}
+
+
+
+ at Article{yozgatligil-dag:,
+ author = {Osman Dag and Ceylan Yozgatligil},
+ title = {GMDH: An R Package for Short Term Forecasting via GMDH - Type Neural Network Algorithms},
+ journal = {The R Journal},
+ year = ,
+ volume = ,
+ number = ,
+ pages = {},
+ month = ,
+ url = {http://journal.r-project.org/archive/-/yozgatligil-dag.pdf}
+
+
+
+ at Article{scrucca-fop-murphy-etal:,
+ author = {Luca Scrucca and Michael Fop and T. Brendan Murphy and Adrian E. Raftery},
+ title = {mclust 5: Clustering, Classification and Density Estimation Using Gaussian Finite Mixture Models},
+ journal = {The R Journal},
+ year = ,
+ volume = ,
+ number = ,
+ pages = {},
+ month = ,
+ url = {http://journal.r-project.org/archive/-/scrucca-fop-murphy-etal.pdf}
+
+
+
@Article{RJournal:2009-1:Chambers,
author = {John M. Chambers},
title = {Facets of {R}},
diff --git a/src/gnuwin32/cran/rdevel.in b/src/gnuwin32/cran/rdevel.in
index 0a4c344..31e99ff 100644
--- a/src/gnuwin32/cran/rdevel.in
+++ b/src/gnuwin32/cran/rdevel.in
@@ -38,16 +38,11 @@
<div class="download">
<p><a href="@RWVER at -win.exe">Download R-Devel build for Windows</a> <span>(62 megabytes, 32/64 bit)</span></p>
<ul>
+ <li>This build of R-Devel uses the gcc 4.9.3 toolchain produced
+ by Jeroen Ooms. For details, see <a href="https://github.com/rwinlib/r-base">the Github page</a>.</li>
<li><a href="../../windows/base/README. at RWVER@">Installation and other instructions</a></li>
<li><a href="NEWS. at RWVER@.html">New features in this version</a></li>
</ul>
- <p><a href="@RWVER at -493-win.exe">Experimental R-Devel build for Windows</a> </p>
- <ul>
- <li>This is a build of R-Devel, using a new gcc 4.9.3 toolchain produced
- by Jeroen Ooms. For details, see <a href="https://github.com/rwinlib/r-base">the Github page</a>.
- It is not compatible with binary packages on CRAN that include C++ code, so it defaults
- to source installs of packages.
- </ul>
</div>
diff --git a/src/include/R.h b/src/include/R.h
index e5726e2..e63028d 100644
--- a/src/include/R.h
+++ b/src/include/R.h
@@ -25,7 +25,7 @@
#endif
#ifndef NO_C_HEADERS
-// same as Rmath.h: needed for cospi etc
+/* same as Rmath.h: needed for cospi etc */
# ifndef __STDC_WANT_IEC_60559_FUNCS_EXT__
# define __STDC_WANT_IEC_60559_FUNCS_EXT__ 1
# endif
diff --git a/src/library/Recommended/KernSmooth_2.23-15.tar.gz b/src/library/Recommended/KernSmooth_2.23-15.tar.gz
index e87c7aa..de785c2 100644
Binary files a/src/library/Recommended/KernSmooth_2.23-15.tar.gz and b/src/library/Recommended/KernSmooth_2.23-15.tar.gz differ
diff --git a/src/library/Recommended/MASS_7.3-45.tar.gz b/src/library/Recommended/MASS_7.3-45.tar.gz
index 517f7dd..ece7ee8 100644
Binary files a/src/library/Recommended/MASS_7.3-45.tar.gz and b/src/library/Recommended/MASS_7.3-45.tar.gz differ
diff --git a/src/library/Recommended/boot_1.3-18.tar.gz b/src/library/Recommended/boot_1.3-18.tar.gz
index d055134..dd2e304 100644
Binary files a/src/library/Recommended/boot_1.3-18.tar.gz and b/src/library/Recommended/boot_1.3-18.tar.gz differ
diff --git a/src/library/Recommended/class_7.3-14.tar.gz b/src/library/Recommended/class_7.3-14.tar.gz
index 28b10ca..e16eabc 100644
Binary files a/src/library/Recommended/class_7.3-14.tar.gz and b/src/library/Recommended/class_7.3-14.tar.gz differ
diff --git a/src/library/Recommended/nlme.tgz b/src/library/Recommended/nlme.tgz
index 21dd3ee..3d05626 120000
--- a/src/library/Recommended/nlme.tgz
+++ b/src/library/Recommended/nlme.tgz
@@ -1 +1 @@
-nlme_3.1-127.tar.gz
\ No newline at end of file
+nlme_3.1-128.tar.gz
\ No newline at end of file
diff --git a/src/library/Recommended/nlme_3.1-127.tar.gz b/src/library/Recommended/nlme_3.1-127.tar.gz
deleted file mode 100644
index 095ac8d..0000000
Binary files a/src/library/Recommended/nlme_3.1-127.tar.gz and /dev/null differ
diff --git a/src/library/Recommended/nlme_3.1-128.tar.gz b/src/library/Recommended/nlme_3.1-128.tar.gz
new file mode 100644
index 0000000..cd6c43a
Binary files /dev/null and b/src/library/Recommended/nlme_3.1-128.tar.gz differ
diff --git a/src/library/Recommended/nnet_7.3-12.tar.gz b/src/library/Recommended/nnet_7.3-12.tar.gz
index a88561e..961a8fa 100644
Binary files a/src/library/Recommended/nnet_7.3-12.tar.gz and b/src/library/Recommended/nnet_7.3-12.tar.gz differ
diff --git a/src/library/Recommended/rpart_4.1-10.tar.gz b/src/library/Recommended/rpart_4.1-10.tar.gz
index 486975e..c39174e 100644
Binary files a/src/library/Recommended/rpart_4.1-10.tar.gz and b/src/library/Recommended/rpart_4.1-10.tar.gz differ
diff --git a/src/library/Recommended/spatial_7.3-11.tar.gz b/src/library/Recommended/spatial_7.3-11.tar.gz
index 575fb46..adfeb5c 100644
Binary files a/src/library/Recommended/spatial_7.3-11.tar.gz and b/src/library/Recommended/spatial_7.3-11.tar.gz differ
diff --git a/src/library/Recommended/survival.tgz b/src/library/Recommended/survival.tgz
index 7cbcb0e..be50792 120000
--- a/src/library/Recommended/survival.tgz
+++ b/src/library/Recommended/survival.tgz
@@ -1 +1 @@
-survival_2.39-2.tar.gz
\ No newline at end of file
+survival_2.39-4.tar.gz
\ No newline at end of file
diff --git a/src/library/Recommended/survival_2.39-2.tar.gz b/src/library/Recommended/survival_2.39-2.tar.gz
deleted file mode 100644
index cc8f002..0000000
Binary files a/src/library/Recommended/survival_2.39-2.tar.gz and /dev/null differ
diff --git a/src/library/Recommended/survival_2.39-4.tar.gz b/src/library/Recommended/survival_2.39-4.tar.gz
new file mode 100644
index 0000000..b2523c1
Binary files /dev/null and b/src/library/Recommended/survival_2.39-4.tar.gz differ
diff --git a/src/library/base/R/datetime.R b/src/library/base/R/datetime.R
index 8e6de97..0768b9b 100644
--- a/src/library/base/R/datetime.R
+++ b/src/library/base/R/datetime.R
@@ -543,6 +543,11 @@ print.difftime <- function(x, digits = getOption("digits"), ...)
val
}
+diff.difftime <- function(x, ...)
+ ## assume class is preserved (it is in diff.default):
+ structure(NextMethod("diff"), units = attr(x, "units"))
+
+
Ops.difftime <- function(e1, e2)
{
coerceTimeUnit <- function(x)
diff --git a/src/library/base/R/factor.R b/src/library/base/R/factor.R
index 319519c..06467e5 100644
--- a/src/library/base/R/factor.R
+++ b/src/library/base/R/factor.R
@@ -1,7 +1,7 @@
# File src/library/base/R/factor.R
# Part of the R package, https://www.R-project.org
#
-# Copyright (C) 1995-2015 The R Core Team
+# Copyright (C) 1995-2016 The R Core Team
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
@@ -56,6 +56,7 @@ as.factor <- function(x) {
levels <- sort(unique.default(x)) # avoid array methods
f <- match(x, levels)
levels(f) <- as.character(levels)
+ if(!is.null(nx <- names(x))) names(f) <- nx
class(f) <- "factor"
f
} else factor(x)
diff --git a/src/library/base/R/format.R b/src/library/base/R/format.R
index 4c6e000..7675cfe 100644
--- a/src/library/base/R/format.R
+++ b/src/library/base/R/format.R
@@ -1,7 +1,7 @@
# File src/library/base/R/format.R
# Part of the R package, https://www.R-project.org
#
-# Copyright (C) 1995-2015 The R Core Team
+# Copyright (C) 1995-2016 The R Core Team
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
@@ -358,11 +358,10 @@ prettyNum <-
stop("'input.d.mark' has no characters")
x.sp <- strsplit(x, input.d.mark, fixed=TRUE)
## can have "1.005.987" here, if all *.mark == "."
- if(any((lx.sp <- lengths(x.sp)) > 2)) { # partly more than two parts
+ if(any(lengths(x.sp) > 2)) { # partly more than two parts
x.sp <- lapply(x.sp, function(xs) {
lx <- length(xs)
- if(lx <= 2) xs else c(paste(xs[1:(lx-1)], collapse=input.d.mark),
- xs[lx])
+ if(lx <= 2) xs else c(paste(xs[-lx], collapse=input.d.mark), xs[lx])
})
}
B. <- vapply(x.sp, `[`, "", 1L) # Before input.d.mark (".")
diff --git a/src/library/base/R/namespace.R b/src/library/base/R/namespace.R
index c947402..1a59533 100644
--- a/src/library/base/R/namespace.R
+++ b/src/library/base/R/namespace.R
@@ -702,7 +702,9 @@ topenv <- function(envir = parent.frame(),
unloadNamespace <- function(ns)
{
- if (any(ns == loadedNamespaces())) { # not to load & unload
+ ## check, so we do not load & unload:
+ if ((is.character(ns) && any(ns == loadedNamespaces())) ||
+ (is.environment(ns) && any(getNamespaceName(ns) == loadedNamespaces()))) {
## only used to run .onUnload
runHook <- function(hookname, env, ...) {
if (!is.null(fun <- env[[hookname]])) {
diff --git a/src/library/base/R/windows/system.R b/src/library/base/R/windows/system.R
index e452548..869e480 100644
--- a/src/library/base/R/windows/system.R
+++ b/src/library/base/R/windows/system.R
@@ -74,7 +74,10 @@ system2 <- function(command, args = character(),
if(is.null(stdout)) stdout <- FALSE
if(is.null(stderr)) stderr <- FALSE
-
+
+ if(length(stdout) != 1L) stop("'stdout' must be of length 1")
+ if(length(stderr) != 1L) stop("'stderr' must be of length 1")
+
if (!is.null(input)) {
f <- tempfile()
on.exit(unlink(f))
diff --git a/src/library/base/man/Platform.Rd b/src/library/base/man/Platform.Rd
index 3788da6..31d81b8 100644
--- a/src/library/base/man/Platform.Rd
+++ b/src/library/base/man/Platform.Rd
@@ -1,6 +1,6 @@
% File src/library/base/man/Platform.Rd
% Part of the R package, https://www.R-project.org
-% Copyright 1995-2015 R Core Team
+% Copyright 1995-2016 R Core Team
% Distributed under GPL 2 or later
\name{.Platform}
@@ -92,6 +92,10 @@
\code{\link{.Machine}} for details of the arithmetic used, and
\code{\link{system}} for invoking platform-specific system commands.
+
+ \code{\link{capabilities}} and \code{\link{extSoftVersion}} (and links
+ there) for availability of capabilities partly \emph{external} to \R
+ but used from \R functions.
}
\examples{
diff --git a/src/library/base/man/assign.Rd b/src/library/base/man/assign.Rd
index 0f8b061..b62f422 100644
--- a/src/library/base/man/assign.Rd
+++ b/src/library/base/man/assign.Rd
@@ -1,6 +1,6 @@
% File src/library/base/man/assign.Rd
% Part of the R package, https://www.R-project.org
-% Copyright 1995-2013 R Core Team
+% Copyright 1995-2016 R Core Team
% Distributed under GPL 2 or later
\name{assign}
@@ -72,7 +72,7 @@ assign(x, value, pos = -1, envir = as.environment(pos),
\seealso{
\code{\link{<-}},
- \code{\link{get}},
+ \code{\link{get}}, the inverse of \code{assign()},
\code{\link{exists}},
\code{\link{environment}}.
}
diff --git a/src/library/base/man/assignOps.Rd b/src/library/base/man/assignOps.Rd
index 9a4e01f..bfe4bc8 100644
--- a/src/library/base/man/assignOps.Rd
+++ b/src/library/base/man/assignOps.Rd
@@ -1,6 +1,6 @@
% File src/library/base/man/assignOps.Rd
% Part of the R package, https://www.R-project.org
-% Copyright 1995-2007 R Core Team
+% Copyright 1995-2016 R Core Team
% Distributed under GPL 2 or later
\name{assignOps}
@@ -37,7 +37,7 @@
or as one of the subexpressions in a braced list of expressions.
The operators \code{<<-} and \code{->>} are normally only used in
- functions, and cause a search to made through parent environments
+ functions, and cause a search to be made through parent environments
for an existing definition of the variable being assigned. If such
a variable is found (and its binding is not locked) then its value
is redefined, otherwise assignment takes place in the global
@@ -68,8 +68,9 @@
}
\seealso{
- \code{\link{assign}}, for \dQuote{subassignment} such
- as \code{x[i] <- v}, \code{\link{[<-}}; % ./Extract.Rd
- \code{\link{environment}}.
+ \code{\link{assign}} (and its inverse \code{\link{get}}),
+ for \dQuote{subassignment} such as \code{x[i] <- v},
+ see \code{\link{[<-}}; % ./Extract.Rd
+ further, \code{\link{environment}}.
}
\keyword{data}
diff --git a/src/library/base/man/bindenv.Rd b/src/library/base/man/bindenv.Rd
index 029f35e..4453b49 100644
--- a/src/library/base/man/bindenv.Rd
+++ b/src/library/base/man/bindenv.Rd
@@ -1,6 +1,6 @@
% File src/library/base/man/bindenv.Rd
% Part of the R package, https://www.R-project.org
-% Copyright 1995-2014 R Core Team
+% Copyright 1995-2016 R Core Team
% Distributed under GPL 2 or later
\name{bindenv}
@@ -30,7 +30,7 @@ bindingIsActive(sym, env)
\item{fun}{a function taking zero or one arguments.}
}
\description{
- These functions represent an experimental interface for adjustments
+ These functions represent an interface for adjustments
to environments and bindings within environments. They allow for
locking environments as well as individual bindings, and for linking
a variable to a function.
diff --git a/src/library/base/man/difftime.Rd b/src/library/base/man/difftime.Rd
index fcb4e9d..e087837 100644
--- a/src/library/base/man/difftime.Rd
+++ b/src/library/base/man/difftime.Rd
@@ -1,9 +1,10 @@
% File src/library/base/man/difftime.Rd
% Part of the R package, https://www.R-project.org
-% Copyright 1995-2014 R Core Team
+% Copyright 1995-2016 R Core Team
% Distributed under GPL 2 or later
\name{difftime}
+\title{Time Intervals / Differences}
\alias{difftime}
\alias{as.difftime}
\alias{as.double.difftime}
@@ -19,13 +20,14 @@
\alias{Summary.difftime}
\alias{[.difftime}
\alias{mean.difftime}
+\alias{diff.difftime}
\alias{c.difftime}
\alias{units}
\alias{units<-}
\alias{time interval} % used by mean.Rd
-\title{Time Intervals}
\description{
- Time intervals creation, printing, and some arithmetic.
+ Time intervals creation, printing, and some arithmetic. The
+ \code{\link{print}()} method calls these \dQuote{time differences}.
}
\usage{
\special{time1 - time2}
@@ -88,7 +90,9 @@ as.difftime(tim, format = "\%X", units = "auto")
\code{"difftime"} object with the same units as the \code{"difftime"}
object. There are methods for \code{\link{mean}} and
\code{\link{sum}} (via the \code{\link[=S3groupGeneric]{Summary}}
- group generic).
+ group generic), and \code{\link{diff}} via \code{\link{diff.default}}
+ building on the \code{"difftime"} method for arithmetic, notably
+ \code{-}.
The units of a \code{"difftime"} object can be extracted by the
\code{units} function, which also has a replacement form. If the
diff --git a/src/library/base/man/files.Rd b/src/library/base/man/files.Rd
index 817e993..a95ca58 100644
--- a/src/library/base/man/files.Rd
+++ b/src/library/base/man/files.Rd
@@ -1,6 +1,6 @@
% File src/library/base/man/files.Rd
% Part of the R package, https://www.R-project.org
-% Copyright 1995-2015 R Core Team
+% Copyright 1995-2016 R Core Team
% Distributed under GPL 2 or later
\name{files}
@@ -187,12 +187,17 @@ Sys.junction(from, to)
(an undocumented restriction of the Windows system call).
Care is needed with removing a junction (and most likely also a
- symbolic link): many tools will remove the target and its contents
- (including Windows Explorer in XP, and \code{unlink} in \R prior to
- 2.15.0).
+ symbolic link): many tools will remove the target and its contents.
}
#endif
+\section{Warning}{
+ Always check the return value of these functions when used in package
+ code. This is especially important for \code{file.rename}, which has
+ OS-specific restrictions (and note that the session temporary
+ directory is commonly on a different file system from the working
+ directory).
+}
\author{
Ross Ihaka, Brian Ripley
}
diff --git a/src/library/base/man/locales.Rd b/src/library/base/man/locales.Rd
index 96fe686..4a3d5f1 100644
--- a/src/library/base/man/locales.Rd
+++ b/src/library/base/man/locales.Rd
@@ -1,6 +1,6 @@
% File src/library/base/man/locales.Rd
% Part of the R package, https://www.R-project.org
-% Copyright 1995-2014 R Core Team
+% Copyright 1995-2016 R Core Team
% Distributed under GPL 2 or later
\name{locales}
@@ -64,14 +64,14 @@ Sys.setlocale(category = "LC_ALL", locale = "")
be a warning, depending on the OS.
Attempts to change the character set (by
- \code{Sys.setlocale("LC_TYPE", )}, if that implies a different
+ \code{Sys.setlocale("LC_CTYPE", )}, if that implies a different
character set) during a session may not work and are likely to lead to
some confusion.
Note that the \env{LANGUAGE} environment variable has precedence over
\code{"LC_MESSAGES"} in selecting the language for message translation
on most \R platforms.
-
+
On platforms where ICU is used for collation the locale used for
collation can be reset by \code{\link{icuSetCollate}}). Except on
Windows, the initial setting is taken from the \code{"LC_COLLATE"}
diff --git a/src/library/base/man/merge.Rd b/src/library/base/man/merge.Rd
index c589421..e9e0de7 100644
--- a/src/library/base/man/merge.Rd
+++ b/src/library/base/man/merge.Rd
@@ -1,7 +1,7 @@
% File src/library/base/man/merge.Rd
% Part of the R package, https://www.R-project.org
-% Copyright 1995-2014 R Core Team
-% Copyright 2002-2011 The R Foundation
+% Copyright 1995-2016 R Core Team
+% Copyright 2002-2016 The R Foundation
% Distributed under GPL 2 or later
\name{merge}
@@ -42,7 +42,7 @@ merge(x, y, \dots)
columns?}
\item{suffixes}{a character vector of length 2 specifying the suffixes
to be used for making unique the names of columns in the result
- which not used for merging (appearing in \code{by} etc).}
+ which are not used for merging (appearing in \code{by} etc).}
\item{incomparables}{values which cannot be matched. See
\code{\link{match}}. This is intended to be used for merging on one
column, so these are incomparable values of that column.}
@@ -95,7 +95,7 @@ merge(x, y, \dots)
\note{
This is intended to work with data frames with vector-like columns:
some aspects work with data frames containing matrices, but not all.
-
+
Currently long vectors are not accepted for inputs, which are thus
restricted to less than 2^31 rows. Prior to \R 3.2.0 that restriction
also applied to the result (and still does for 32-bit platforms).
diff --git a/src/library/base/man/ns-load.Rd b/src/library/base/man/ns-load.Rd
index 08cea2c..0efade2 100644
--- a/src/library/base/man/ns-load.Rd
+++ b/src/library/base/man/ns-load.Rd
@@ -1,6 +1,6 @@
% File src/library/base/man/ns-load.Rd
% Part of the R package, https://www.R-project.org
-% Copyright 1995-2015 R Core Team
+% Copyright 1995-2016 R Core Team
% Distributed under GPL 2 or later
\name{ns-load}
@@ -121,6 +121,13 @@ isNamespaceLoaded(name)
stopifnot( identical(isNamespaceLoaded( "foo" ), FALSE),
identical(isNamespaceLoaded(quote(foo)), FALSE),
identical(isNamespaceLoaded(quote(stats)), statL))
+
+hasM <- isNamespaceLoaded("MASS") # (to restore if needed)
+Mns <- asNamespace("MASS") # loads it if not already
+stopifnot( isNamespaceLoaded("MASS"))
+unloadNamespace(Mns) # unloading the NS 'object'
+stopifnot( ! isNamespaceLoaded("MASS"))
+if (hasM) loadNamespace("MASS") # (restoring previous state)
}
\keyword{data}
\keyword{utilities}
diff --git a/src/library/base/man/raw.Rd b/src/library/base/man/raw.Rd
index 1eae59c..7c921a9 100644
--- a/src/library/base/man/raw.Rd
+++ b/src/library/base/man/raw.Rd
@@ -1,6 +1,6 @@
% File src/library/base/man/raw.Rd
% Part of the R package, https://www.R-project.org
-% Copyright 2004-2014 R Core Team
+% Copyright 2004-2016 R Core Team
% Distributed under GPL 2 or later
\name{raw}
@@ -59,7 +59,9 @@ is.raw(x)
xx <- raw(2)
xx[1] <- as.raw(40) # NB, not just 40.
xx[2] <- charToRaw("A")
-xx
+xx ## 28 41 -- raw prints hexadecimals
+dput(xx) ## as.raw(c(0x28, 0x41))
+as.integer(xx) ## 40 65
x <- "A test string"
(y <- charToRaw(x))
@@ -67,9 +69,10 @@ is.vector(y) # TRUE
rawToChar(y)
is.raw(x)
is.raw(y)
+stopifnot( charToRaw("\xa3") == as.raw(0xa3) )
isASCII <- function(txt) all(charToRaw(txt) <= as.raw(127))
isASCII(x) # true
-isASCII("\x9c25.63") # false (in Latin-1, this is an amount in UK pounds)
+isASCII("\xa325.63") # false (in Latin-1, this is an amount in UK pounds)
}
\keyword{classes}
diff --git a/src/library/base/man/sink.Rd b/src/library/base/man/sink.Rd
index d198cac..40f9ed9 100644
--- a/src/library/base/man/sink.Rd
+++ b/src/library/base/man/sink.Rd
@@ -1,6 +1,6 @@
% File src/library/base/man/sink.Rd
% Part of the R package, https://www.R-project.org
-% Copyright 1995-2015 R Core Team
+% Copyright 1995-2016 R Core Team
% Distributed under GPL 2 or later
\name{sink}
@@ -26,7 +26,7 @@ sink.number(type = c("output", "message"))
sink and to the current output stream, like the Unix program \code{tee}.}
}
\description{
- \code{sink} diverts \R output to a connection.
+ \code{sink} diverts \R output to a connection (and stops such diversions).
\code{sink.number()} reports how many diversions are in use.
@@ -34,7 +34,8 @@ sink.number(type = c("output", "message"))
connection currently being used for error messages.
}
\details{
- \code{sink} diverts \R output to a connection. If \code{file} is a
+ \code{sink} diverts \R output to a connection (and must be used again
+ to finish such a diversion, see below!). If \code{file} is a
character string, a file connection with that name will be established
for the duration of the diversion.
@@ -99,14 +100,14 @@ sink("sink-examp.txt")
i <- 1:10
outer(i, i, "*")
sink()
-unlink("sink-examp.txt")
+\dontshow{unlink("sink-examp.txt")}% don't show what confuses newbies
\donttest{
## capture all the output to a file.
zz <- file("all.Rout", open = "wt")
sink(zz)
sink(zz, type = "message")
try(log("a"))
-## back to the console
+## revert output back to the console -- only then access the file!
sink(type = "message")
sink()
file.show("all.Rout")
diff --git a/src/library/base/man/weekday.POSIXt.Rd b/src/library/base/man/weekday.POSIXt.Rd
index a57ff31..02602a5 100644
--- a/src/library/base/man/weekday.POSIXt.Rd
+++ b/src/library/base/man/weekday.POSIXt.Rd
@@ -1,6 +1,6 @@
% File src/library/base/man/weekday.POSIXt.Rd
% Part of the R package, https://www.R-project.org
-% Copyright 1995-2009 R Core Team
+% Copyright 1995-2016 R Core Team
% Distributed under GPL 2 or later
\name{weekdays}
@@ -41,7 +41,8 @@ julian(x, \dots)
}
\arguments{
\item{x}{an object inheriting from class \code{"POSIXt"} or \code{"Date"}.}
- \item{abbreviate}{logical. Should the names be abbreviated?}
+ \item{abbreviate}{logical vector (possibly recycled). Should the names be
+ abbreviated?}
\item{origin}{an length-one object inheriting from class
\code{"POSIXt"} or \code{"Date"}.}
\item{\dots}{arguments for other methods.}
diff --git a/src/library/base/man/withVisible.Rd b/src/library/base/man/withVisible.Rd
index d376df7..d88305f 100644
--- a/src/library/base/man/withVisible.Rd
+++ b/src/library/base/man/withVisible.Rd
@@ -1,6 +1,6 @@
% File src/library/utils/man/withVisible.Rd
% Part of the R package, https://www.R-project.org
-% Copyright 1995-2010 R Core Team
+% Copyright 1995-2016 R Core Team
% Distributed under GPL 2 or later
\name{withVisible}
@@ -28,9 +28,9 @@ withVisible(x)
\seealso{\code{\link{invisible}}, \code{\link{eval}}}
\examples{
x <- 1
-withVisible(x <- 1)
+withVisible(x <- 1) # *$visible is FALSE
x
-withVisible(x)
+withVisible(x) # *$visible is TRUE
# Wrap the call in evalq() for special handling
diff --git a/src/library/datasets/man/Nile.Rd b/src/library/datasets/man/Nile.Rd
index 52fb738..e580086 100644
--- a/src/library/datasets/man/Nile.Rd
+++ b/src/library/datasets/man/Nile.Rd
@@ -1,6 +1,6 @@
% File src/library/datasets/man/Nile.Rd
% Part of the R package, https://www.R-project.org
-% Copyright 1995-2007 R Core Team
+% Copyright 1995-2016 R Core Team
% Distributed under GPL 2 or later
\name{Nile}
@@ -9,7 +9,9 @@
\title{Flow of the River Nile}
\usage{Nile}
\description{
- Measurements of the annual flow of the river Nile at Ashwan 1871--1970.
+ Measurements of the annual flow of the river Nile at Aswan (formerly
+ \code{Assuan}), 1871--1970, in \eqn{10^8 m^3},
+ \dQuote{with apparent changepoint near 1898} (Cobb(1978), Table 1, p.249).
}
\format{
A time series of length 100.
diff --git a/src/library/grDevices/R/prettyDate.R b/src/library/grDevices/R/prettyDate.R
index 96cc423..bb32544 100644
--- a/src/library/grDevices/R/prettyDate.R
+++ b/src/library/grDevices/R/prettyDate.R
@@ -110,6 +110,7 @@ prettyDate <- function(x, n = 5, min.n = n %/% 2, sep = " ", ...)
calcSteps <- function(s, lim = range(zz)) {
startTime <- trunc_POSIXt(lim[1], units = s$start) ## FIXME: should be trunc() eventually
at <- seqDtime(startTime, end = lim[2], by = s$spec)
+ if(anyNA(at)) { at <- at[!is.na(at)]; if(!length(at)) return(at) }
r1 <- sum(at <= lim[1])
r2 <- length(at) + 1 - sum(at >= lim[2])
if(r2 == length(at) + 1) { # not covering at right -- add point at right
@@ -210,17 +211,17 @@ seqDtime <- function(beg, end, by, length=NULL) {
## intersperse at and at2 := 15-day-shifted( at ), via rbind():
if(md == 1) {
at2$mday <- 15L
- at2 <- rbind(at, as.POSIXct(at2))
- } else if(md == 15) {
+ } else if(md >= 15) { # (md == 16 may happen; not seen yet)
at2$mday <- 1L
at2$mon <- at2$mon + 1L
- fix <- at2$mon == 13L
+ fix <- at2$mon == 13L # -> january, next year
at2$mon [fix] <- 1L
at2$year[fix] <- at2$year[fix] + 1L
## at2 now has wrong 'yday','wday',.. and we rely on as.POSIXct():
- at2 <- rbind(at, as.POSIXct(at2))
+ } else if(md < 15) { ## e.g., southern hemisphere, seen 14
+ at2$mday <- md + 14L # consistent w (1 -> 15) in 1st case; ok even in Feb.
}
- else stop("'mday' must be 1 or 15 for \"halfmonth\"")
+ at2 <- rbind(at, as.POSIXct(at2), deparse.level = 0L)
structure(at2[i], class = class(at), tzone = attr(at, "tzone"))
}
diff --git a/src/library/grDevices/tests/ps-tests.Rout.save b/src/library/grDevices/tests/ps-tests.Rout.save
index 09c3cd1..5dbcb17 100644
--- a/src/library/grDevices/tests/ps-tests.Rout.save
+++ b/src/library/grDevices/tests/ps-tests.Rout.save
@@ -1,5 +1,5 @@
-R version 3.3.0 beta (2016-04-19 r70517) -- "Supposedly Educational"
+R version 3.3.1 RC (2016-06-14 r70774) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)
@@ -95,4 +95,4 @@ null device
>
> proc.time()
user system elapsed
- 0.385 0.019 0.393
+ 0.393 0.022 0.402
diff --git a/src/library/grDevices/tests/xfig-tests.Rout.save b/src/library/grDevices/tests/xfig-tests.Rout.save
index ffa5133..9eef9af 100644
--- a/src/library/grDevices/tests/xfig-tests.Rout.save
+++ b/src/library/grDevices/tests/xfig-tests.Rout.save
@@ -1,5 +1,5 @@
-R version 3.3.0 beta (2016-04-19 r70517) -- "Supposedly Educational"
+R version 3.3.1 RC (2016-06-14 r70774) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)
@@ -102,4 +102,4 @@ Type 'q()' to quit R.
>
> proc.time()
user system elapsed
- 0.145 0.016 0.150
+ 0.159 0.024 0.172
diff --git a/src/library/graphics/R/text.R b/src/library/graphics/R/text.R
index ecef9f2..7b9226a 100644
--- a/src/library/graphics/R/text.R
+++ b/src/library/graphics/R/text.R
@@ -1,7 +1,7 @@
# File src/library/graphics/R/text.R
# Part of the R package, https://www.R-project.org
#
-# Copyright (C) 1995-2012 The R Core Team
+# Copyright (C) 1995-2016 The R Core Team
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
@@ -19,18 +19,19 @@
text <- function(x, ...) UseMethod("text")
text.default <-
-function(x, y = NULL, labels = seq_along(x),
+function(x, y = NULL, labels = seq_along(x$x),
adj = NULL, pos = NULL, offset = 0.5,
vfont = NULL, cex = 1, col = NULL, font = NULL, ...)
{
if (!missing(y) && (is.character(y) || is.expression(y))) {
labels <- y; y <- NULL
}
+ x <- xy.coords(x,y, recycle = TRUE)
labels <- as.graphicsAnnot(labels)
if (!is.null(vfont))
vfont <- c(typeface = pmatch(vfont[1L], Hershey$typeface),
fontindex = pmatch(vfont[2L], Hershey$fontindex))
- .External.graphics(C_text, xy.coords(x,y, recycle = TRUE), labels,
+ .External.graphics(C_text, x, labels,
adj, pos, offset, vfont, cex, col, font, ...)
invisible()
}
diff --git a/src/library/graphics/man/legend.Rd b/src/library/graphics/man/legend.Rd
index 6de8235..8ab3c75 100644
--- a/src/library/graphics/man/legend.Rd
+++ b/src/library/graphics/man/legend.Rd
@@ -72,8 +72,9 @@ legend(x, y = NULL, legend, fill = NULL, col = par("col"),
text. Useful for y-adjustment when \code{labels} are
\link{plotmath} expressions.}
\item{text.width}{the width of the legend text in x (\code{"user"})
- coordinates. (Should be positive even for a reversed x axis.)
- Defaults to the proper value computed by \code{\link{strwidth}(legend)}.}
+ coordinates. (Should be a single positive number even for a reversed
+ x axis.) Defaults to the proper value computed by
+ \code{\link{strwidth}(legend)}.}
\item{text.col}{the color used for the legend text.}
\item{text.font}{the font used for the legend text, see \code{\link{text}}.}
\item{merge}{logical; if \code{TRUE}, merge points and lines but
diff --git a/src/library/graphics/man/text.Rd b/src/library/graphics/man/text.Rd
index 724f293..0954c3a 100644
--- a/src/library/graphics/man/text.Rd
+++ b/src/library/graphics/man/text.Rd
@@ -1,6 +1,6 @@
% File src/library/graphics/man/text.Rd
% Part of the R package, https://www.R-project.org
-% Copyright 1995-2015 R Core Team
+% Copyright 1995-2016 R Core Team
% Distributed under GPL 2 or later
\name{text}
@@ -9,7 +9,7 @@
\usage{
text(x, \dots)
-\method{text}{default} (x, y = NULL, labels = seq_along(x), adj = NULL,
+\method{text}{default} (x, y = NULL, labels = seq_along(x$x), adj = NULL,
pos = NULL, offset = 0.5, vfont = NULL,
cex = 1, col = NULL, font = NULL, \dots)
}
diff --git a/src/library/grid/inst/doc/displaylist.pdf b/src/library/grid/inst/doc/displaylist.pdf
index 115712b..e8a0a79 100644
Binary files a/src/library/grid/inst/doc/displaylist.pdf and b/src/library/grid/inst/doc/displaylist.pdf differ
diff --git a/src/library/grid/inst/doc/frame.pdf b/src/library/grid/inst/doc/frame.pdf
index 14aad85..ab4309c 100644
Binary files a/src/library/grid/inst/doc/frame.pdf and b/src/library/grid/inst/doc/frame.pdf differ
diff --git a/src/library/grid/inst/doc/grid.pdf b/src/library/grid/inst/doc/grid.pdf
index 60a6e37..f27527d 100644
Binary files a/src/library/grid/inst/doc/grid.pdf and b/src/library/grid/inst/doc/grid.pdf differ
diff --git a/src/library/grid/inst/doc/grobs.pdf b/src/library/grid/inst/doc/grobs.pdf
index e068124..75899b0 100644
Binary files a/src/library/grid/inst/doc/grobs.pdf and b/src/library/grid/inst/doc/grobs.pdf differ
diff --git a/src/library/grid/inst/doc/interactive.pdf b/src/library/grid/inst/doc/interactive.pdf
index e2e9166..f4b1e2a 100644
Binary files a/src/library/grid/inst/doc/interactive.pdf and b/src/library/grid/inst/doc/interactive.pdf differ
diff --git a/src/library/grid/inst/doc/locndimn.pdf b/src/library/grid/inst/doc/locndimn.pdf
index c4f4dce..4802af9 100644
Binary files a/src/library/grid/inst/doc/locndimn.pdf and b/src/library/grid/inst/doc/locndimn.pdf differ
diff --git a/src/library/grid/inst/doc/moveline.pdf b/src/library/grid/inst/doc/moveline.pdf
index 1ed507f..bce4b1e 100644
Binary files a/src/library/grid/inst/doc/moveline.pdf and b/src/library/grid/inst/doc/moveline.pdf differ
diff --git a/src/library/grid/inst/doc/nonfinite.pdf b/src/library/grid/inst/doc/nonfinite.pdf
index ace4995..a8d7276 100644
Binary files a/src/library/grid/inst/doc/nonfinite.pdf and b/src/library/grid/inst/doc/nonfinite.pdf differ
diff --git a/src/library/grid/inst/doc/plotexample.pdf b/src/library/grid/inst/doc/plotexample.pdf
index f135a8d..bf95bde 100644
Binary files a/src/library/grid/inst/doc/plotexample.pdf and b/src/library/grid/inst/doc/plotexample.pdf differ
diff --git a/src/library/grid/inst/doc/rotated.pdf b/src/library/grid/inst/doc/rotated.pdf
index 0fa23ef..5e45a14 100644
Binary files a/src/library/grid/inst/doc/rotated.pdf and b/src/library/grid/inst/doc/rotated.pdf differ
diff --git a/src/library/grid/inst/doc/saveload.pdf b/src/library/grid/inst/doc/saveload.pdf
index af3c15b..c4a86ce 100644
Binary files a/src/library/grid/inst/doc/saveload.pdf and b/src/library/grid/inst/doc/saveload.pdf differ
diff --git a/src/library/grid/inst/doc/sharing.pdf b/src/library/grid/inst/doc/sharing.pdf
index ca6035a..138fd07 100644
Binary files a/src/library/grid/inst/doc/sharing.pdf and b/src/library/grid/inst/doc/sharing.pdf differ
diff --git a/src/library/grid/inst/doc/viewports.pdf b/src/library/grid/inst/doc/viewports.pdf
index df2b701..e8defaf 100644
Binary files a/src/library/grid/inst/doc/viewports.pdf and b/src/library/grid/inst/doc/viewports.pdf differ
diff --git a/src/library/grid/tests/testls.Rout.save b/src/library/grid/tests/testls.Rout.save
index 1f3516d..e88376d 100644
--- a/src/library/grid/tests/testls.Rout.save
+++ b/src/library/grid/tests/testls.Rout.save
@@ -1,5 +1,5 @@
-R version 3.3.0 beta (2016-04-19 r70517) -- "Supposedly Educational"
+R version 3.3.1 RC (2016-06-14 r70774) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)
@@ -340,4 +340,4 @@ List of 6
>
> proc.time()
user system elapsed
- 0.217 0.021 0.226
+ 0.213 0.023 0.225
diff --git a/src/library/methods/man/setClass.Rd b/src/library/methods/man/setClass.Rd
index 8057af8..5d88ba6 100644
--- a/src/library/methods/man/setClass.Rd
+++ b/src/library/methods/man/setClass.Rd
@@ -37,8 +37,7 @@ setClass(Class, representation, prototype, contains=character(),
It is allowed to provide an unnamed character vector as a limiting
case, with the elements taken as slot names and all slots having
the unrestricted class \code{"ANY"}.
-
- }
+ }
\item{contains}{ the names (and optionally package slots) for the
\emph{superclasses} of this class. The special superclass
\code{"VIRTUAL"} causes the new class to be created as a
@@ -58,21 +57,22 @@ setClass(Class, representation, prototype, contains=character(),
its argument is a valid object of this class and one or more strings
describing the failures otherwise). See \code{\link{validObject}}
for details.}
- \item{S3methods, representation, access, version }{ All these
- arguments are deprecated from version 3.0.0 of \R and should be
- avoided.
-
- \code{S3methods} is a flag indicating that old-style methods
- will be written involving this class. Modern versions of \R
- attempt to match formal and old-style methods consistently, so
- this argument is largely irrelevant.
-
- \code{representation} is an argument inherited from S that
- included both \code{slots} and \code{contains}, but the use of
- the latter two arguments is clearer and recommended.
-
- \code{access} and \code{version} are included for
- historical compatibility with S-Plus, but ignored.}
+ \item{S3methods, representation, access, version }{All these
+ arguments are deprecated from version 3.0.0 of \R and should be
+ \emph{avoided}.
+
+ \code{S3methods} is a flag indicating that old-style methods
+ will be written involving this class. Modern versions of \R
+ attempt to match formal and old-style methods consistently, so
+ this argument is largely irrelevant.
+
+ \code{representation} is an argument inherited from S that
+ included both \code{slots} and \code{contains}, but the use of
+ the latter two arguments is clearer and recommended.
+
+ \code{access} and \code{version} are included for
+ historical compatibility with S-Plus, but ignored.
+ }
\item{sealed}{ if \code{TRUE}, the class definition will be sealed,
so that another call to \code{setClass} will fail on this class name.
}
@@ -247,7 +247,7 @@ This should be a rare occurrence.
Springer (For the original S4 version.)
}
\seealso{
-\code{\link{Classes}} for a general discussion of classes,
+ \code{\link{Classes}} for a general discussion of classes,
\code{\link{Methods}} for an analogous discussion of methods,
\code{\link{makeClassRepresentation}}
}
@@ -258,15 +258,14 @@ This should be a rare occurrence.
if(isClass("track")) removeClass("track")
}
## A simple class with two slots
-track <- setClass("track",
- slots = c(x="numeric", y="numeric"))
+track <- setClass("track", slots = c(x="numeric", y="numeric"))
## an object from the class
t1 <- track(x = 1:10, y = 1:10 + rnorm(10))
## A class extending the previous, adding one more slot
trackCurve <- setClass("trackCurve",
- slots = c(smooth = "numeric"),
- contains = "track")
+ slots = c(smooth = "numeric"),
+ contains = "track")
## an object containing a superclass object
t1s <- trackCurve(t1, smooth = 1:10)
@@ -287,8 +286,8 @@ numWithId <- setClass("numWithId", slots = c(id = "character"),
numWithId(1:3, id = "An Example")
## inherit from reference object of type "environment"
-stampedEnv <-setClass("stampedEnv", contains = "environment",
- slots = c(update = "POSIXct"))
+stampedEnv <- setClass("stampedEnv", contains = "environment",
+ slots = c(update = "POSIXct"))
setMethod("[[<-", c("stampedEnv", "character", "missing"),
function(x, i, j, ..., value) {
ev <- as(x, "environment")
diff --git a/src/library/methods/tests/testIs.R b/src/library/methods/tests/testIs.R
index 8685468..6e648a8 100644
--- a/src/library/methods/tests/testIs.R
+++ b/src/library/methods/tests/testIs.R
@@ -50,3 +50,12 @@ stopifnot(identical(getDataPart(m1), 1:3),
identical(S3Part(m1, strict=TRUE), 1:3),
identical(S3Part(m2, strict=TRUE), 1:3),
identical(2*pi, S3Part(nn, strict = TRUE)))
+
+if(FALSE) ## --- all these fail still:
+stopifnot(
+ identical(as(1L, "numeric"), as.numeric(1L))
+ ,
+ identical(as(1L, "numeric"), 1.0)
+ ,
+ is.double(as(1L, "double"))
+ )
diff --git a/src/library/parallel/inst/doc/parallel.pdf b/src/library/parallel/inst/doc/parallel.pdf
index 5900b50..1601656 100644
Binary files a/src/library/parallel/inst/doc/parallel.pdf and b/src/library/parallel/inst/doc/parallel.pdf differ
diff --git a/src/library/parallel/tests/multicore2.Rout.save b/src/library/parallel/tests/multicore2.Rout.save
index bc934a9..9e8aa6b 100644
--- a/src/library/parallel/tests/multicore2.Rout.save
+++ b/src/library/parallel/tests/multicore2.Rout.save
@@ -1,5 +1,5 @@
-R version 3.3.0 beta (2016-04-19 r70517) -- "Supposedly Educational"
+R version 3.3.1 RC (2016-06-14 r70774) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)
@@ -45,4 +45,4 @@ Calculations on Transformed Scale; Intervals on Original Scale
>
> proc.time()
user system elapsed
- 0.104 0.017 0.171
+ 0.146 0.026 0.262
diff --git a/src/library/parallel/tests/snow2.Rout.save b/src/library/parallel/tests/snow2.Rout.save
index 83bf995..340df90 100644
--- a/src/library/parallel/tests/snow2.Rout.save
+++ b/src/library/parallel/tests/snow2.Rout.save
@@ -1,5 +1,5 @@
-R version 3.3.0 beta (2016-04-19 r70517) -- "Supposedly Educational"
+R version 3.3.1 RC (2016-06-14 r70774) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)
@@ -50,4 +50,4 @@ Calculations on Transformed Scale; Intervals on Original Scale
>
> proc.time()
user system elapsed
- 0.119 0.027 0.543
+ 0.151 0.024 0.571
diff --git a/src/library/stats/COPYRIGHTS.modreg b/src/library/stats/COPYRIGHTS.modreg
index be2b1ec..ee91db0 100644
--- a/src/library/stats/COPYRIGHTS.modreg
+++ b/src/library/stats/COPYRIGHTS.modreg
@@ -17,7 +17,7 @@ src/stxwx.f
From the public domain source of the package GAMFIT by T. Hastie and
R. Tibshirani, converted to double precision and with consistency
changes to the calls to bvalue.
- Original at http://lib.stat.cmu.edu/general/gamfit.
+ Originally derived from http://lib.stat.cmu.edu/general/gamfit (now defunct).
src/loessc.c
src/loessf.f
diff --git a/src/library/stats/R/runmed.R b/src/library/stats/R/runmed.R
index 404bb5b..627c4af 100644
--- a/src/library/stats/R/runmed.R
+++ b/src/library/stats/R/runmed.R
@@ -109,7 +109,7 @@ smoothEnds <- function(y, k = 3)
if (k >= 3L) {
for (i in 3:k) {
j <- 2L*i - 1L
- sm [i] <- med.odd( y [1L:j] , j) #- left border
+ sm [i] <- med.odd( y[1L:j] , j) #- left border
sm[n-i+1L] <- med.odd( y[(n+1L-j):n], j) #- right border
}
}
@@ -118,6 +118,6 @@ smoothEnds <- function(y, k = 3)
##--- For the very first and last pt.: Use Tukey's end-point rule: ---
## Ysm[1L]:= Median(Ysm[2L],X1,Z_0), where Z_0 is extrapol. from Ysm[2L],Ysm[3L]
sm[1L] <- med3(y[1L], sm [2L] , 3*sm [2L] - 2*sm [3L])
- sm[n] <- med3(y[n], sm[n-1L], 3*sm[n-1L] - 2*sm[n-2L])
+ sm[n] <- med3(y[n], sm[n-1L], 3*sm[n-1L] - 2*sm[n-2L])
sm
}
diff --git a/src/library/stats/man/dendrogram.Rd b/src/library/stats/man/dendrogram.Rd
index e4a7d30..6f42045 100644
--- a/src/library/stats/man/dendrogram.Rd
+++ b/src/library/stats/man/dendrogram.Rd
@@ -1,6 +1,6 @@
% File src/library/stats/man/dendrogram.Rd
% Part of the R package, https://www.R-project.org
-% Copyright 1995-2015 R Core Team
+% Copyright 1995-2016 R Core Team
% Copyright 2002-2015 The R Foundation
% Distributed under GPL 2 or later
@@ -212,9 +212,10 @@ is.leaf(object)
}
\section{Warning}{
Some operations on dendrograms such as \code{merge()} make use of
- recursion. For very deep trees it may be necessary to increase
- \code{\link{options}("expressions")}: if you do you are likely to need
- to set the C stack size larger than the default where possible.
+ recursion. For deep trees it may be necessary to increase
+ \code{\link{options}("expressions")}: if you do, you are likely to need
+ to set the C stack size (\code{\link{Cstack_info}()[["size"]]}) larger
+ than the default where possible.
}
\seealso{
\code{\link{dendrapply}} for applying a function to \emph{each} node.
diff --git a/src/library/stats/man/deriv.Rd b/src/library/stats/man/deriv.Rd
index 96355e9..0637775 100644
--- a/src/library/stats/man/deriv.Rd
+++ b/src/library/stats/man/deriv.Rd
@@ -4,6 +4,7 @@
% Distributed under GPL 2 or later
\name{deriv}
+\title{Symbolic and Algorithmic Derivatives of Simple Expressions}
\alias{D}
\alias{deriv}
\alias{deriv.default}
@@ -11,9 +12,8 @@
\alias{deriv3}
\alias{deriv3.default}
\alias{deriv3.formula}
-\title{Symbolic and Algorithmic Derivatives of Simple Expressions}
\description{
- Compute derivatives of simple expressions, symbolically.
+ Compute derivatives of simple expressions, symbolically and algorithmically.
}
\usage{
D (expr, name)
@@ -31,12 +31,12 @@ deriv3(expr, \dots)
hessian = TRUE, \dots)
}
\arguments{
- \item{expr}{A \code{\link{expression}} or \code{\link{call}} or
+ \item{expr}{a \code{\link{expression}} or \code{\link{call}} or
(except \code{D}) a formula with no lhs.}
\item{name,namevec}{character vector, giving the variable names (only
one for \code{D()}) with respect to which derivatives will be
computed.}
- \item{function.arg}{If specified and non-\code{NULL}, a character
+ \item{function.arg}{if specified and non-\code{NULL}, a character
vector of arguments for a function return, or a function (with empty
body) or \code{TRUE}, the latter indicating that a function with
argument names \code{namevec} should be used.}
@@ -158,5 +158,3 @@ DD(expression(sin(x^2)), "x", 3)
}
\keyword{math}
\keyword{nonlinear}
-
-
diff --git a/src/library/stats/man/median.Rd b/src/library/stats/man/median.Rd
index afd47d7..2d05721 100644
--- a/src/library/stats/man/median.Rd
+++ b/src/library/stats/man/median.Rd
@@ -1,6 +1,6 @@
% File src/library/stats/man/median.Rd
% Part of the R package, https://www.R-project.org
-% Copyright 1995-2014 R Core Team
+% Copyright 1995-2016 R Core Team
% Distributed under GPL 2 or later
\name{median}
@@ -29,8 +29,8 @@ median(x, na.rm = FALSE)
}
\value{
The default method returns a length-one object of the same type as
- \code{x}, except when \code{x} is integer of even length, when the
- result will be double.
+ \code{x}, except when \code{x} is logical or integer of even length,
+ when the result will be double.
If there are no values or if \code{na.rm = FALSE} and there are \code{NA}
values the result is \code{NA} of the same type as \code{x} (or more
diff --git a/src/library/stats/man/model.matrix.Rd b/src/library/stats/man/model.matrix.Rd
index f29743e..69fa5ea 100644
--- a/src/library/stats/man/model.matrix.Rd
+++ b/src/library/stats/man/model.matrix.Rd
@@ -1,6 +1,6 @@
% File src/library/stats/man/model.matrix.Rd
% Part of the R package, https://www.R-project.org
-% Copyright 1995-2013 R Core Team
+% Copyright 1995-2016 R Core Team
% Distributed under GPL 2 or later
\name{model.matrix}
@@ -29,7 +29,9 @@ model.matrix(object, \dots)
\item{\dots}{further arguments passed to or from other methods.}
}
\description{
- \code{model.matrix} creates a design (or model) matrix.
+ \code{model.matrix} creates a design (or model) matrix, e.g., by
+ expanding factors to a set of dummary variables (depending on the
+ contrasts) and expanding interactions similarly.
}
\details{
\code{model.matrix} creates a design matrix from the description
@@ -81,6 +83,10 @@ model.matrix(object, \dots)
\seealso{
\code{\link{model.frame}}, \code{\link{model.extract}},
\code{\link{terms}}
+
+ \code{\link[Matrix]{sparse.model.matrix}} from package
+ \CRANpkg{Matrix} for creating \emph{sparse} model matrices, which may
+ be more efficient in large dimensions.
}
\examples{
ff <- log(Volume) ~ log(Height) + log(Girth)
diff --git a/src/library/stats/man/relevel.Rd b/src/library/stats/man/relevel.Rd
index 946f26b..8ca286c 100644
--- a/src/library/stats/man/relevel.Rd
+++ b/src/library/stats/man/relevel.Rd
@@ -1,6 +1,6 @@
% File src/library/stats/man/relevel.Rd
% Part of the R package, https://www.R-project.org
-% Copyright 1995-2007 R Core Team
+% Copyright 1995-2007, 2016 R Core Team
% Distributed under GPL 2 or later
\name{relevel}
@@ -13,9 +13,9 @@
relevel(x, ref, \dots)
}
\arguments{
- \item{x}{An unordered factor.}
- \item{ref}{The reference level.}
- \item{\dots}{Additional arguments for future methods.}
+ \item{x}{an unordered factor.}
+ \item{ref}{the reference level, typically a string.}
+ \item{\dots}{additional arguments for future methods.}
}
\description{
The levels of a factor are re-ordered so that the level specified by
@@ -26,7 +26,10 @@ relevel(x, ref, \dots)
\value{
A factor of the same length as \code{x}.
}
-
+\details{
+ This, as \code{\link{reorder}()}, is a special case of simply calling
+ \code{\link{factor}(x, levels = levels(x)[....])}.
+}
\seealso{
\code{\link{factor}}, \code{\link{contr.treatment}},
\code{\link{levels}}, \code{\link{reorder}}.
diff --git a/src/library/stats/man/reorder.factor.Rd b/src/library/stats/man/reorder.factor.Rd
index 01cdf0a..dd24ab1 100644
--- a/src/library/stats/man/reorder.factor.Rd
+++ b/src/library/stats/man/reorder.factor.Rd
@@ -1,6 +1,6 @@
% File src/library/stats/man/reorder.factor.Rd
% Part of the R package, https://www.R-project.org
-% Copyright 1995-2007 R Core Team
+% Copyright 1995-2016 R Core Team
% Distributed under GPL 2 or later
\name{reorder.default}
@@ -21,20 +21,18 @@ reorder(x, \dots)
}
\arguments{
- \item{x}{
- An atomic vector, usually a factor (possibly ordered). The vector
- is treated as a categorical variable whose levels will be reordered.
- If \code{x} is not a factor, its unique values will be used as
- the implicit levels.
+ \item{x}{an atomic vector, usually a \code{\link{factor}} (possibly
+ ordered). The vector is treated as a categorical variable whose
+ levels will be reordered. If \code{x} is not a factor, its unique
+ values will be used as the implicit levels.
}
\item{X}{ a vector of the same length as \code{x}, whose subset
of values for each unique level of \code{x} determines the
eventual order of that level.
}
- \item{FUN}{ a function whose first argument is a vector and
- returns a scalar, to be applied to each subset of \code{X}
- determined by the levels of \code{x}.
- }
+ \item{FUN}{a \code{\link{function}} whose first argument is a vector
+ and returns a scalar, to be applied to each subset of \code{X}
+ determined by the levels of \code{x}.}
\item{\dots}{ optional: extra arguments supplied to \code{FUN}}
\item{order}{ logical, whether return value will be an ordered factor
rather than a factor.
@@ -52,7 +50,10 @@ reorder(x, \dots)
\code{X} (in the original order of the levels of \code{x}) is returned
as the \code{"scores"} attribute.
}
-
+\details{
+ This, as \code{\link{relevel}()}, is a special case of simply calling
+ \code{\link{factor}(x, levels = levels(x)[....])}.
+}
\author{Deepayan Sarkar \email{deepayan.sarkar at r-project.org}}
\seealso{
diff --git a/src/library/stats/man/shapiro.test.Rd b/src/library/stats/man/shapiro.test.Rd
index b3db28d..de7c237 100644
--- a/src/library/stats/man/shapiro.test.Rd
+++ b/src/library/stats/man/shapiro.test.Rd
@@ -1,6 +1,6 @@
% File src/library/stats/man/shapiro.test.Rd
% Part of the R package, https://www.R-project.org
-% Copyright 1995-2007 R Core Team
+% Copyright 1995-2016 R Core Team
% Distributed under GPL 2 or later
\name{shapiro.test}
@@ -40,7 +40,7 @@ shapiro.test(x)
}
\source{
The algorithm used is a C translation of the Fortran code described in
- Royston (1995) and found at \url{http://lib.stat.cmu.edu/apstat/R94}.
+ Royston (1995). % and was found at \url{http://lib.stat.cmu.edu/apstat/R94}.
The calculation of the p value is exact for \eqn{n = 3}, otherwise
approximations are used, separately for \eqn{4 \le n \le 11} and
\eqn{n \ge 12}.
diff --git a/src/library/stats/man/smooth.spline.Rd b/src/library/stats/man/smooth.spline.Rd
index 6fb7a30..edf5a31 100644
--- a/src/library/stats/man/smooth.spline.Rd
+++ b/src/library/stats/man/smooth.spline.Rd
@@ -220,7 +220,9 @@ smooth.spline(x, y = NULL, w = NULL, df, spar = NULL, cv = FALSE,
}
\source{
This function is based on code in the \code{GAMFIT} Fortran program by
- T. Hastie and R. Tibshirani (\url{http://lib.stat.cmu.edu/general/}),
+ T. Hastie and R. Tibshirani (originally taken from
+ \url{http://lib.stat.cmu.edu/general/}, which is now defunct but
+ mirrors may still be available),
which makes use of spline code by Finbarr O'Sullivan. Its design
parallels the \code{smooth.spline} function of Chambers & Hastie (1992).
}
diff --git a/src/library/stats/src/deriv.c b/src/library/stats/src/deriv.c
index 08aa28a..ccf1980 100644
--- a/src/library/stats/src/deriv.c
+++ b/src/library/stats/src/deriv.c
@@ -638,7 +638,7 @@ SEXP doD(SEXP args)
if (isExpression(CAR(args))) expr = VECTOR_ELT(CAR(args), 0);
else expr = CAR(args);
if (!(isLanguage(expr) || isSymbol(expr) || isNumeric(expr) || isComplex(expr)))
- error(_("'expr' must be an expression or call"));
+ error(_("expression must not be type '%s'"), type2char(TYPEOF(expr)));
var = CADR(args);
if (!isString(var) || length(var) < 1)
error(_("variable must be a character string"));
diff --git a/src/library/stats/tests/glm.Rout.save b/src/library/stats/tests/glm.Rout.save
index 452ce3c..26e555f 100644
--- a/src/library/stats/tests/glm.Rout.save
+++ b/src/library/stats/tests/glm.Rout.save
@@ -1,5 +1,5 @@
-R version 3.3.0 beta (2016-04-19 r70517) -- "Supposedly Educational"
+R version 3.3.1 RC (2016-06-14 r70774) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)
@@ -29,4 +29,4 @@ Warning messages:
>
> proc.time()
user system elapsed
- 0.100 0.017 0.106
+ 0.112 0.020 0.123
diff --git a/src/library/stats/tests/ks-test.Rout.save b/src/library/stats/tests/ks-test.Rout.save
index d5e0a1d..ddb8b31 100644
--- a/src/library/stats/tests/ks-test.Rout.save
+++ b/src/library/stats/tests/ks-test.Rout.save
@@ -1,5 +1,5 @@
-R version 3.3.0 beta (2016-04-19 r70517) -- "Supposedly Educational"
+R version 3.3.1 RC (2016-06-14 r70774) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)
@@ -114,4 +114,4 @@ In ks.test(round(ds2, 1), "pnorm", exact = TRUE) :
>
> proc.time()
user system elapsed
- 0.138 0.022 0.148
+ 0.144 0.017 0.148
diff --git a/src/library/stats/tests/nls.Rout.save b/src/library/stats/tests/nls.Rout.save
index d4f5304..dc5fda2 100644
--- a/src/library/stats/tests/nls.Rout.save
+++ b/src/library/stats/tests/nls.Rout.save
@@ -1,5 +1,5 @@
-R version 3.3.0 beta (2016-04-19 r70517) -- "Supposedly Educational"
+R version 3.3.1 RC (2016-06-14 r70774) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)
@@ -703,4 +703,4 @@ Warning in nls(y ~ b0[fac] + b1 * x, start = list(b0 = c(1, 1), b1 = 101), :
>
> proc.time()
user system elapsed
- 1.094 0.022 1.109
+ 1.110 0.022 1.120
diff --git a/src/library/stats/tests/simulate.Rout.save b/src/library/stats/tests/simulate.Rout.save
index e27670e..d3732c0 100644
--- a/src/library/stats/tests/simulate.Rout.save
+++ b/src/library/stats/tests/simulate.Rout.save
@@ -1,5 +1,5 @@
-R version 3.3.0 beta (2016-04-19 r70517) -- "Supposedly Educational"
+R version 3.3.1 RC (2016-06-14 r70774) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)
@@ -408,4 +408,4 @@ log(u) 0.015569 0.00033659 46.256 5.7704e-10
>
> proc.time()
user system elapsed
- 0.196 0.020 0.204
+ 0.202 0.021 0.213
diff --git a/src/library/tools/R/Vignettes.R b/src/library/tools/R/Vignettes.R
index e350a2d..a784d5b 100644
--- a/src/library/tools/R/Vignettes.R
+++ b/src/library/tools/R/Vignettes.R
@@ -506,7 +506,7 @@ buildVignettes <-
for(i in seq_along(vigns$docs)) {
file <- basename(vigns$docs[i])
name <- vigns$names[i]
- engine <- vignetteEngine(vigns$engine[i])
+ engine <- vignetteEngine(vigns$engines[i])
enc <- vigns$encodings[i]
if (enc == "non-ASCII")
stop(gettextf("Vignette '%s' is non-ASCII but has no declared encoding",
@@ -1013,7 +1013,7 @@ function(vig_name, docDir, encoding = "", pkgdir)
file <- vigns$docs[i]
file <- basename(file)
name <- vigns$names[i]
- engine <- vignetteEngine(vigns$engine[i])
+ engine <- vignetteEngine(vigns$engines[i])
output <- tryCatch({
engine$tangle(file, quiet = TRUE, encoding = encoding)
diff --git a/src/library/tools/R/build.R b/src/library/tools/R/build.R
index a3010cd..a31f73c 100644
--- a/src/library/tools/R/build.R
+++ b/src/library/tools/R/build.R
@@ -73,7 +73,7 @@ get_exclude_patterns <- function()
### based on Perl build script
-.build_packages <- function(args = NULL)
+.build_packages <- function(args = NULL, no.q = interactive())
{
## this requires on Windows sh make
@@ -101,7 +101,11 @@ get_exclude_patterns <- function()
Ssystem <- function(command, args = character(), ...)
system2(command, args, stdout = NULL, stderr = NULL, ...)
- do_exit <- function(status = 1L) q("no", status = status, runLast = FALSE)
+ do_exit <-
+ if(no.q)
+ function(status = 1L) stop(".build_package() exit status ", status)
+ else
+ function(status = 1L) q("no", status = status, runLast = FALSE)
env_path <- function(...) file.path(..., fsep = .Platform$path.sep)
@@ -1023,7 +1027,7 @@ get_exclude_patterns <- function()
## Finalize
filename <- paste0(pkgname, "_", desc["Version"], ".tar.gz")
filepath <- file.path(startdir, filename)
- ## NB: tests/reg-packages.R relies on this exact format!
+ ## NB: ../../../../tests/reg-packages.R relies on this exact format!
messageLog(Log, "building ", sQuote(filename))
res <- utils::tar(filepath, pkgname, compression = "gzip",
compression_level = 9L,
diff --git a/src/library/tools/R/index.R b/src/library/tools/R/index.R
index 65698cb..36b9938 100644
--- a/src/library/tools/R/index.R
+++ b/src/library/tools/R/index.R
@@ -57,7 +57,8 @@ function(dataDir, contents)
if(!length(datasets)) return(matrix("", 0L, 2L))
names(datasets) <- sub("/[^/]*$", "", names(datasets))
datasets <- sort(datasets)
- dataIndex <- cbind(datasets, "")
+ dataIndex <- cbind(datasets, "", deparse.level = 0L)
+ dimnames(dataIndex) <- NULL
## Note that NROW(contents) might be 0.
if(length(datasets) && NROW(contents)) {
aliasIndices <-
@@ -70,7 +71,6 @@ function(dataDir, contents)
dataIndex[, 1L] <-
as.vector(ifelse(datasets == names(datasets), datasets,
paste0(datasets, " (", names(datasets), ")")))
- dimnames(dataIndex) <- NULL
dataIndex
}
diff --git a/src/library/tools/R/install.R b/src/library/tools/R/install.R
index fc1243d..55b32a0 100644
--- a/src/library/tools/R/install.R
+++ b/src/library/tools/R/install.R
@@ -1523,18 +1523,7 @@
errmsg("extracted multiple files from ", sQuote(pkg))
if (dir.exists(new)) pkgname <- basename(new)
else errmsg("cannot extract package from ", sQuote(pkg))
-
- ## If we have a binary bundle distribution, there should
- ## be a DESCRIPTION file at top level. These are defunct
- if (file.exists(ff <- file.path(tmpdir, "DESCRIPTION"))) {
- con <- read.dcf(ff, "Contains")
- if (!is.na(con))
- message("looks like a binary bundle", domain = NA)
- else
- message("unknown package layout", domain = NA)
- do_cleanup_tmpdir()
- q("no", status = 1, runLast = FALSE)
- } else if (file.exists(file.path(tmpdir, pkgname, "DESCRIPTION"))) {
+ if (file.exists(file.path(tmpdir, pkgname, "DESCRIPTION"))) {
allpkgs <- c(allpkgs, file.path(tmpdir, pkgname))
} else errmsg("cannot extract package from ", sQuote(pkg))
} else if (file.exists(file.path(pkg, "DESCRIPTION"))) {
@@ -2318,7 +2307,7 @@ function()
m <- f
else if(file.exists(f <- path.expand("~/.R/Makevars")))
m <- f
- }
+ }
else {
if(!is.na(f <- Sys.getenv("R_MAKEVARS_USER", NA_character_))) {
if(file.exists(f)) m <- f
@@ -2329,7 +2318,7 @@ function()
m <- f
else if(file.exists(f <- path.expand("~/.R/Makevars")))
m <- f
- }
+ }
m
}
diff --git a/src/library/utils/R/sessionInfo.R b/src/library/utils/R/sessionInfo.R
index d3f9678..62a45be 100644
--- a/src/library/utils/R/sessionInfo.R
+++ b/src/library/utils/R/sessionInfo.R
@@ -66,7 +66,8 @@ sessionInfo <- function(package = NULL)
"9" = "Mavericks",
"10" = "Yosemite",
"11" = "El Capitan",
- "unknown"))
+ "12" = "Sierra",
+ "unknown"))
},
"SunOS" = {
ver <- system('uname -r', intern = TRUE)
diff --git a/src/library/utils/inst/doc/Sweave.pdf b/src/library/utils/inst/doc/Sweave.pdf
index 3900ee4..1ec7b34 100644
Binary files a/src/library/utils/inst/doc/Sweave.pdf and b/src/library/utils/inst/doc/Sweave.pdf differ
diff --git a/src/library/utils/man/SweaveUtils.Rd b/src/library/utils/man/SweaveUtils.Rd
index 20364f9..bdcef4a 100644
--- a/src/library/utils/man/SweaveUtils.Rd
+++ b/src/library/utils/man/SweaveUtils.Rd
@@ -1,6 +1,6 @@
% File src/library/utils/man/SweaveUtils.Rd
% Part of the R package, https://www.R-project.org
-% Copyright 1995-2007 R Core Team
+% Copyright 1995-2016 R Core Team
% Distributed under GPL 2 or later
\name{SweaveUtils}
@@ -16,8 +16,9 @@
\alias{makeRweaveLatexCodeRunner}
\title{Sweave Driver Utilities}
\description{
- These functions are handy for writing Sweave drivers and currently not
- documented. Look at the source code of the Sweave Latex driver (in this
+ These functions are handy for writing Sweave drivers and are
+ considered internal and hence not documented. Look at the source code
+ of the Sweave Latex driver (in this
package) or the HTML driver (in the R2HTML package from CRAN) to see
how they can be used.
}
diff --git a/src/library/utils/man/download.file.Rd b/src/library/utils/man/download.file.Rd
index 64f0260..35cce5c 100644
--- a/src/library/utils/man/download.file.Rd
+++ b/src/library/utils/man/download.file.Rd
@@ -86,7 +86,7 @@ download.file(url, destfile, method, quiet = FALSE, mode = "w",
\code{destfile} can be character vectors of the same length greater
than one. For a single URL and \code{quiet = FALSE} a progress
bar is shown in interactive use.
-
+
For methods \code{"wget"} and \code{"curl"} a system call is made to
the tool given by \code{method}, and the respective program must be
installed on your system and be in the search path for executables.
@@ -120,7 +120,7 @@ download.file(url, destfile, method, quiet = FALSE, mode = "w",
The remaining details apply to the \code{"internal"}, \code{"wininet"}
and \code{"libcurl"} methods only.
-
+
The timeout for many parts of the transfer can be set by the option
\code{timeout} which defaults to 60 seconds.
@@ -137,10 +137,10 @@ download.file(url, destfile, method, quiet = FALSE, mode = "w",
A progress bar tracks the transfer. If the file length is known, the
full width of the bar is the known length. Otherwise the initial
width represents 100 Kbytes and is doubled whenever the current width
- is exceeded. (In non-interactive use this uses a text version. If the
+ is exceeded. (In non-interactive use this uses a text version. If the
file length is known, an equals sign represents 2\% of the transfer
completed: otherwise a dot represents 10Kb.)
-
+
If \code{mode} is not supplied and \code{url} ends in one of
\code{.gz}, \code{.bz2}, \code{.xz}, \code{.tgz}, \code{.zip},
@@ -161,7 +161,7 @@ download.file(url, destfile, method, quiet = FALSE, mode = "w",
\note{
Files of more than 2GB are supported on 64-bit builds of \R; they
may be truncated on some 32-bit builds.
-
+
Methods \code{"wget"} and \code{"curl"} are mainly for historical
compatibility but provide may provide capabilities not supported by
the \code{"libcurl"} or \code{"wininet"} methods.
@@ -183,7 +183,7 @@ download.file(url, destfile, method, quiet = FALSE, mode = "w",
Options} of the system are used to choose proxies and so on; these are
set in the Control Panel and are those used for Internet Explorer.
#endif
-
+
The next two paragraphs apply to the internal code only.
Proxies can be specified via environment variables.
@@ -195,7 +195,7 @@ download.file(url, destfile, method, quiet = FALSE, mode = "w",
and \env{ftp_proxy_password}. The form of \env{http_proxy}
should be \code{http://proxy.dom.com/} or
\code{http://proxy.dom.com:8080/} where the port defaults to
- \code{80} and the trailing slash may be omitted. For
+ \code{80} and the trailing slash may be omitted. For
\env{ftp_proxy} use the form \code{ftp://proxy.dom.com:3128/}
where the default port is \code{21}. These environment variables
must be set before the download code is first used: they cannot be
diff --git a/src/library/utils/man/url.show.Rd b/src/library/utils/man/url.show.Rd
index a06df03..f5c5879 100644
--- a/src/library/utils/man/url.show.Rd
+++ b/src/library/utils/man/url.show.Rd
@@ -30,7 +30,7 @@ url.show(url, title = url, file = tempfile(),
\code{\link{url}}, \code{\link{file.show}}, \code{\link{download.file}}
}
\examples{
-\dontrun{url.show("http://lib.stat.cmu.edu/datasets/csb/ch3a.txt")}
+\dontrun{url.show("http://www.stats.ox.ac.uk/pub/datasets/csb/ch3a.txt")}
}
\keyword{file}
\keyword{misc}
diff --git a/src/main/CommandLineArgs.c b/src/main/CommandLineArgs.c
index f13a86d..8f97387 100644
--- a/src/main/CommandLineArgs.c
+++ b/src/main/CommandLineArgs.c
@@ -240,7 +240,6 @@ R_common_command_line(int *pac, char **argv, Rstart Rp)
R_ShowMessage(_("WARNING: '--max-ppsize' value is negative: ignored"));
else if (lval < 10000)
R_ShowMessage(_("WARNING: '--max-ppsize' value is too small: ignored"));
-
else if (lval > 500000)
R_ShowMessage(_("WARNING: '--max-ppsize' value is too large: ignored"));
else Rp->ppsize = (size_t) lval;
diff --git a/src/main/character.c b/src/main/character.c
index 98274a0..5e27e2d 100644
--- a/src/main/character.c
+++ b/src/main/character.c
@@ -1520,44 +1520,47 @@ SEXP attribute_hidden do_strtrim(SEXP call, SEXP op, SEXP args, SEXP env)
if (!isString(x = CAR(args)))
error(_("strtrim() requires a character vector"));
len = XLENGTH(x);
- PROTECT(width = coerceVector(CADR(args), INTSXP));
- nw = LENGTH(width);
- if (!nw || (nw < len && len % nw))
- error(_("invalid '%s' argument"), "width");
- for (i = 0; i < nw; i++)
- if (INTEGER(width)[i] == NA_INTEGER ||
- INTEGER(width)[i] < 0)
- error(_("invalid '%s' argument"), "width");
PROTECT(s = allocVector(STRSXP, len));
- vmax = vmaxget();
- for (i = 0; i < len; i++) {
- if (STRING_ELT(x, i) == NA_STRING) {
- SET_STRING_ELT(s, i, STRING_ELT(x, i));
- continue;
- }
- w = INTEGER(width)[i % nw];
- This = translateChar(STRING_ELT(x, i));
- nc = (int) strlen(This);
- buf = R_AllocStringBuffer(nc, &cbuff);
- wsum = 0;
- mbs_init(&mb_st);
- for (p = This, w0 = 0, q = buf; *p ;) {
- nb = (int) Mbrtowc(&wc, p, MB_CUR_MAX, &mb_st);
- w0 = Ri18n_wcwidth(wc);
- if (w0 < 0) { p += nb; continue; } /* skip non-printable chars */
- wsum += w0;
- if (wsum <= w) {
- for (k = 0; k < nb; k++) *q++ = *p++;
- } else break;
+ if(len > 0) {
+ PROTECT(width = coerceVector(CADR(args), INTSXP));
+ nw = LENGTH(width);
+ if (!nw || (nw < len && len % nw))
+ error(_("invalid '%s' argument"), "width");
+ for (i = 0; i < nw; i++)
+ if (INTEGER(width)[i] == NA_INTEGER ||
+ INTEGER(width)[i] < 0)
+ error(_("invalid '%s' argument"), "width");
+ vmax = vmaxget();
+ for (i = 0; i < len; i++) {
+ if (STRING_ELT(x, i) == NA_STRING) {
+ SET_STRING_ELT(s, i, STRING_ELT(x, i));
+ continue;
+ }
+ w = INTEGER(width)[i % nw];
+ This = translateChar(STRING_ELT(x, i));
+ nc = (int) strlen(This);
+ buf = R_AllocStringBuffer(nc, &cbuff);
+ wsum = 0;
+ mbs_init(&mb_st);
+ for (p = This, w0 = 0, q = buf; *p ;) {
+ nb = (int) Mbrtowc(&wc, p, MB_CUR_MAX, &mb_st);
+ w0 = Ri18n_wcwidth(wc);
+ if (w0 < 0) { p += nb; continue; } /* skip non-printable chars */
+ wsum += w0;
+ if (wsum <= w) {
+ for (k = 0; k < nb; k++) *q++ = *p++;
+ } else break;
+ }
+ *q = '\0';
+ SET_STRING_ELT(s, i, markKnown(buf, STRING_ELT(x, i)));
+ vmaxset(vmax);
}
- *q = '\0';
- SET_STRING_ELT(s, i, markKnown(buf, STRING_ELT(x, i)));
- vmaxset(vmax);
+ R_FreeStringBufferL(&cbuff);
+ UNPROTECT(1);
}
- if (len > 0) R_FreeStringBufferL(&cbuff);
SHALLOW_DUPLICATE_ATTRIB(s, x);
/* This copied the class, if any */
- UNPROTECT(2);
+ UNPROTECT(1);
return s;
}
@@ -1653,6 +1656,13 @@ SEXP attribute_hidden do_strrep(SEXP call, SEXP op, SEXP args, SEXP env)
error(_("invalid '%s' value"), "times");
xi = CHAR(STRING_ELT(x, ix));
nc = (int) strlen(xi);
+
+ /* check for feasible result length; use double to protect
+ against integer overflow */
+ double len = ((double) nc) * ni;
+ if (len > INT_MAX)
+ error("R character strings are limited to 2^31-1 bytes");
+
cbuf = buf = CallocCharBuf(nc * ni);
for(j = 0; j < ni; j++) {
strcpy(buf, xi);
diff --git a/src/main/coerce.c b/src/main/coerce.c
index c1c4450..4ab8fd8 100644
--- a/src/main/coerce.c
+++ b/src/main/coerce.c
@@ -2800,10 +2800,14 @@ static SEXP R_set_class(SEXP obj, SEXP value, SEXP call)
SEXP attribute_hidden R_do_set_class(SEXP call, SEXP op, SEXP args, SEXP env)
{
+ SEXP ans;
checkArity(op, args);
check1arg(args, call, "x");
- return R_set_class(CAR(args), CADR(args), call);
+ if (MAYBE_SHARED(CAR(args))) SETCAR(args, shallow_duplicate(CAR(args)));
+ ans = R_set_class(CAR(args), CADR(args), call);
+ SET_NAMED(CAR(args), 0);
+ return ans;
}
/* primitive */
diff --git a/src/main/envir.c b/src/main/envir.c
index e16934d..2044ffd 100644
--- a/src/main/envir.c
+++ b/src/main/envir.c
@@ -49,9 +49,10 @@
*/
/* R 1.8.0: namespaces are no longer experimental, so the following
- * are no longer 'experimental options':
+ * are no longer 'experimental options', but rather three sections
+ * describing the API:
*
- * EXPERIMENTAL_NAMESPACES: When this is defined the variable
+ * NAMESPACES:
* R_BaseNamespace holds an environment that has R_GlobalEnv as
* its parent. This environment does not actually contain any
* bindings of its own. Instead, it redirects all fetches and
@@ -62,7 +63,7 @@
* ENVIRONMENT_LOCKING: Locking an environment prevents new bindings
* from being created and existing bindings from being removed.
*
- * FANCY_BINDINGS: This enables binding locking and "active bindings".
+ * FANCY_BINDINGS: We have binding locking and "active bindings".
* When a binding is locked, its value cannot be changed. It may
* still be removed from the environment if the environment is not
* locked.
@@ -1642,7 +1643,6 @@ static SEXP setVarInFrame(SEXP rho, SEXP symbol, SEXP value)
frame = FRAME(rho);
while (frame != R_NilValue) {
if (TAG(frame) == symbol) {
- if (rho == R_GlobalEnv) R_DirtyImage = 1;
SET_BINDING_VALUE(frame, value);
SET_MISSING(frame, 0); /* same as defineVar */
return symbol;
@@ -1659,7 +1659,6 @@ static SEXP setVarInFrame(SEXP rho, SEXP symbol, SEXP value)
hashcode = HASHVALUE(c) % HASHSIZE(HASHTAB(rho));
frame = R_HashGetLoc(hashcode, symbol, HASHTAB(rho));
if (frame != R_NilValue) {
- if (rho == R_GlobalEnv) R_DirtyImage = 1;
SET_BINDING_VALUE(frame, value);
SET_MISSING(frame, 0); /* same as defineVar */
return symbol;
@@ -2804,6 +2803,7 @@ SEXP attribute_hidden do_env2list(SEXP call, SEXP op, SEXP args, SEXP rho)
int sort_nms = asLogical(CADDR(args)); /* sorted = TRUE/FALSE */
if (sort_nms == NA_LOGICAL) sort_nms = 0;
+ // k := length(env) = envxlength(env) :
if (env == R_BaseEnv || env == R_BaseNamespace)
k = BuiltinSize(all, 0);
else if (HASHTAB(env) != R_NilValue)
@@ -2949,29 +2949,23 @@ SEXP attribute_hidden do_eapply(SEXP call, SEXP op, SEXP args, SEXP rho)
}
/* Leaks out via inlining in ../library/tools/src/ */
-int Rf_envlength(SEXP rho)
-{
- if(IS_USER_DATABASE(rho)) {
- R_ObjectTable *tb = (R_ObjectTable*)
- R_ExternalPtrAddr(HASHTAB(rho));
- return length(tb->objects(tb));
- } else if( HASHTAB(rho) != R_NilValue)
- return HashTableSize(HASHTAB(rho), 1);
- else
- return FrameSize(FRAME(rho), 1);
-}
-
-R_xlen_t Rf_envxlength(SEXP rho)
-{
- if(IS_USER_DATABASE(rho)) {
- R_ObjectTable *tb = (R_ObjectTable*)
- R_ExternalPtrAddr(HASHTAB(rho));
- return xlength(tb->objects(tb));
- } else if( HASHTAB(rho) != R_NilValue)
- return HashTableSize(HASHTAB(rho), 1);
- else
- return FrameSize(FRAME(rho), 1);
-}
+#define R_ENVLENGTH(NAME_, LENGTH_FN_, TYPE_) \
+TYPE_ NAME_(SEXP rho) \
+{ \
+ if(IS_USER_DATABASE(rho)) { \
+ R_ObjectTable *tb = (R_ObjectTable*) R_ExternalPtrAddr(HASHTAB(rho)); \
+ return LENGTH_FN_(tb->objects(tb)); \
+ } else if( HASHTAB(rho) != R_NilValue) \
+ return HashTableSize(HASHTAB(rho), 1); \
+ else if (rho == R_BaseEnv || rho == R_BaseNamespace) \
+ return BuiltinSize(1, 0); \
+ else \
+ return FrameSize(FRAME(rho), 1); \
+}
+
+R_ENVLENGTH(Rf_envlength, length, int)
+
+R_ENVLENGTH(Rf_envxlength, xlength, R_xlen_t)
/*----------------------------------------------------------------------
diff --git a/src/main/eval.c b/src/main/eval.c
index 2f04b5a..e84645a 100644
--- a/src/main/eval.c
+++ b/src/main/eval.c
@@ -1595,7 +1595,8 @@ SEXP attribute_hidden do_for(SEXP call, SEXP op, SEXP args, SEXP rho)
if ( !isSymbol(sym) ) errorcall(call, _("non-symbol loop variable"));
- if (R_jit_enabled > 2 && isUnmodifiedSpecSym(CAR(call), rho)
+ dbg = RDEBUG(rho);
+ if (R_jit_enabled > 2 && !dbg && isUnmodifiedSpecSym(CAR(call), rho)
&& R_compileAndExecute(call, rho))
return R_NilValue;
@@ -1621,7 +1622,6 @@ SEXP attribute_hidden do_for(SEXP call, SEXP op, SEXP args, SEXP rho)
defineVar(sym, R_NilValue, rho);
PROTECT(cell = GET_BINDING_CELL(sym, rho));
- dbg = RDEBUG(rho);
bgn = BodyHasBraces(body);
/* bump up NAMED count of sequence to avoid modification by loop code */
@@ -1717,11 +1717,11 @@ SEXP attribute_hidden do_while(SEXP call, SEXP op, SEXP args, SEXP rho)
checkArity(op, args);
- if (R_jit_enabled > 2 && isUnmodifiedSpecSym(CAR(call), rho)
+ dbg = RDEBUG(rho);
+ if (R_jit_enabled > 2 && !dbg && isUnmodifiedSpecSym(CAR(call), rho)
&& R_compileAndExecute(call, rho))
return R_NilValue;
- dbg = RDEBUG(rho);
body = CADR(args);
bgn = BodyHasBraces(body);
@@ -1757,11 +1757,11 @@ SEXP attribute_hidden do_repeat(SEXP call, SEXP op, SEXP args, SEXP rho)
checkArity(op, args);
- if (R_jit_enabled > 2 && isUnmodifiedSpecSym(CAR(call), rho)
+ dbg = RDEBUG(rho);
+ if (R_jit_enabled > 2 && !dbg && isUnmodifiedSpecSym(CAR(call), rho)
&& R_compileAndExecute(call, rho))
return R_NilValue;
- dbg = RDEBUG(rho);
body = CAR(args);
begincontext(&cntxt, CTXT_LOOP, R_NilValue, rho, R_BaseEnv, R_NilValue,
diff --git a/src/main/objects.c b/src/main/objects.c
index 193b77e..0305b23 100644
--- a/src/main/objects.c
+++ b/src/main/objects.c
@@ -848,7 +848,7 @@ static SEXP inherits3(SEXP x, SEXP what, SEXP which)
SEXP klass, rval = R_NilValue /* -Wall */;
if(IS_S4_OBJECT(x))
- PROTECT(klass = R_data_class2(x));
+ PROTECT(klass = R_data_class2(x)); // -> := S4_extends( "class(x)" )
else
PROTECT(klass = R_data_class(x, FALSE));
diff --git a/src/main/printutils.c b/src/main/printutils.c
index 8082fbd..c8842e2 100644
--- a/src/main/printutils.c
+++ b/src/main/printutils.c
@@ -1,7 +1,7 @@
/*
* R : A Computer Language for Statistical Data Analysis
* Copyright (C) 1995, 1996 Robert Gentleman and Ross Ihaka
- * Copyright (C) 1999--2015 The R Core Team
+ * Copyright (C) 1999--2016 The R Core Team
*
* This program is free software; you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
@@ -91,7 +91,7 @@ R_size_t R_Decode2Long(char *p, int *ierr)
/* else look for letter-code ending : */
if(R_Verbose)
REprintf("R_Decode2Long(): v=%ld\n", v);
- // NB: currently, positive *ierr are not differentiated in the callers:
+ // NOTE: currently, positive *ierr are not differentiated in the callers:
if(p[0] == 'G') {
if((Giga * (double)v) > R_SIZE_T_MAX) { *ierr = 4; return(v); }
return (R_size_t) Giga * v;
@@ -321,10 +321,6 @@ const char
const char *dec)
{
static char buff[NB];
- char Re[NB];
- const char *Im, *tmp;
- int flagNegIm = 0;
- Rcomplex y;
/* IEEE allows signed zeros; strip these here */
if (x.r == 0.0) x.r = 0.0;
@@ -335,6 +331,10 @@ const char
"%*s", /* was "%*s%*s", R_print.gap, "", */
min(wr+wi+2, (NB-1)), CHAR(R_print.na_string));
} else {
+ char Re[NB];
+ const char *Im, *tmp;
+ int flagNegIm = 0;
+ Rcomplex y;
/* formatComplex rounded, but this does not, and we need to
keep it that way so we don't get strange trailing zeros.
But we do want to avoid printing small exponentials that
@@ -342,12 +342,10 @@ const char
*/
z_prec_r(&y, &x, R_print.digits);
/* EncodeReal has static buffer, so copy */
- if(y.r == 0.) tmp = EncodeReal0(y.r, wr, dr, er, dec);
- else tmp = EncodeReal0(x.r, wr, dr, er, dec);
+ tmp = EncodeReal0(y.r == 0. ? y.r : x.r, wr, dr, er, dec);
strcpy(Re, tmp);
if ( (flagNegIm = (x.i < 0)) ) x.i = -x.i;
- if(y.i == 0.) Im = EncodeReal0(y.i, wi, di, ei, dec);
- else Im = EncodeReal0(x.i, wi, di, ei, dec);
+ Im = EncodeReal0(y.i == 0. ? y.i : x.i, wi, di, ei, dec);
snprintf(buff, NB, "%s%s%si", Re, flagNegIm ? "-" : "+", Im);
}
buff[NB-1] = '\0';
@@ -648,7 +646,7 @@ const char *EncodeString(SEXP s, int w, int quote, Rprt_adj justify)
case L'"':
case L'`':
{
- if(quote == *p) *q++ = '\\';
+ if(quote == *p) *q++ = '\\';
*q++ = *p++;
break;
}
@@ -723,7 +721,7 @@ const char *EncodeString(SEXP s, int w, int quote, Rprt_adj justify)
case '`':
{
if(quote == *p) *q++ = '\\';
- *q++ = *p;
+ *q++ = *p;
break;
}
default: *q++ = *p; break;
diff --git a/src/main/unique.c b/src/main/unique.c
index d46d35b..714eb4b 100644
--- a/src/main/unique.c
+++ b/src/main/unique.c
@@ -1,7 +1,7 @@
/*
* R : A Computer Language for Statistical Data Analysis
* Copyright (C) 1995, 1996 Robert Gentleman and Ross Ihaka
- * Copyright (C) 1997--2015 The R Core Team
+ * Copyright (C) 1997--2016 The R Core Team
*
* This program is free software; you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
@@ -122,19 +122,25 @@ static hlen rhash(SEXP x, R_xlen_t indx, HashData *d)
#endif
}
+static Rcomplex unify_complex_na(Rcomplex z) {
+ Rcomplex ans;
+ ans.r = (z.r == 0.0) ? 0.0 : z.r;
+ ans.i = (z.i == 0.0) ? 0.0 : z.i;
+ /* we want all NaNs except NA equal, and all NAs equal */
+ if (R_IsNA(ans.r)) ans.r = NA_REAL;
+ else if (R_IsNaN(ans.r)) ans.r = R_NaN;
+ if (R_IsNA(ans.i)) ans.i = NA_REAL;
+ else if (R_IsNaN(ans.i)) ans.i = R_NaN;
+ return ans;
+}
+
static hlen chash(SEXP x, R_xlen_t indx, HashData *d)
{
- Rcomplex tmp;
- unsigned int u;
- tmp.r = (COMPLEX(x)[indx].r == 0.0) ? 0.0 : COMPLEX(x)[indx].r;
- tmp.i = (COMPLEX(x)[indx].i == 0.0) ? 0.0 : COMPLEX(x)[indx].i;
- /* we want all NaNs except NA equal, and all NAs equal */
- if (R_IsNA(tmp.r)) tmp.r = NA_REAL;
- else if (R_IsNaN(tmp.r)) tmp.r = R_NaN;
- if (R_IsNA(tmp.i)) tmp.i = NA_REAL;
- else if (R_IsNaN(tmp.i)) tmp.i = R_NaN;
+ Rcomplex tmp = unify_complex_na(COMPLEX(x)[indx]);
+
#if 2*SIZEOF_INT == SIZEOF_DOUBLE
{
+ unsigned int u;
union foo tmpu;
tmpu.d = tmp.r;
u = tmpu.u[0] ^ tmpu.u[1];
@@ -199,23 +205,29 @@ static int requal(SEXP x, R_xlen_t i, SEXP y, R_xlen_t j)
else return 0;
}
-static int cequal(SEXP x, R_xlen_t i, SEXP y, R_xlen_t j)
+/* This is differentiating {NA,1}, {NA,0}, {NA, NaN}, {NA, NA},
+ * but R's print() and format() render all as "NA" */
+static int cplx_eq(Rcomplex x, Rcomplex y)
{
- if (i < 0 || j < 0) return 0;
- if (!ISNAN(COMPLEX(x)[i].r) && !ISNAN(COMPLEX(x)[i].i)
- && !ISNAN(COMPLEX(y)[j].r) && !ISNAN(COMPLEX(y)[j].i))
- return COMPLEX(x)[i].r == COMPLEX(y)[j].r &&
- COMPLEX(x)[i].i == COMPLEX(y)[j].i;
- else if ((R_IsNA(COMPLEX(x)[i].r) || R_IsNA(COMPLEX(x)[i].i))
- && (R_IsNA(COMPLEX(y)[j].r) || R_IsNA(COMPLEX(y)[j].i)))
+ if (!ISNAN(x.r) && !ISNAN(x.i) &&
+ !ISNAN(y.r) && !ISNAN(y.i))
+ return x.r == y.r && x.i == y.i;
+ else if ((R_IsNA(x.r) || R_IsNA(x.i)) &&
+ (R_IsNA(y.r) || R_IsNA(y.i)))
return 1;
- else if ((R_IsNaN(COMPLEX(x)[i].r) || R_IsNaN(COMPLEX(x)[i].i))
- && (R_IsNaN(COMPLEX(y)[j].r) || R_IsNaN(COMPLEX(y)[j].i)))
+ else if ((R_IsNaN(x.r) || R_IsNaN(x.i)) &&
+ (R_IsNaN(y.r) || R_IsNaN(y.i)))
return 1;
else
return 0;
}
+static int cequal(SEXP x, R_xlen_t i, SEXP y, R_xlen_t j)
+{
+ if (i < 0 || j < 0) return 0;
+ return cplx_eq(COMPLEX(x)[i], COMPLEX(y)[j]);
+}
+
static int sequal(SEXP x, R_xlen_t i, SEXP y, R_xlen_t j)
{
if (i < 0 || j < 0) return 0;
@@ -856,12 +868,12 @@ SEXP match5(SEXP itable, SEXP ix, int nmatch, SEXP incomp, SEXP env)
PROTECT(table = coerceVector(table, type)); nprot++;
// special case scalar x -- for speed only :
- if(LENGTH(x) == 1 && !incomp) {
+ if(LENGTH(x) == 1 && !incomp && TYPEOF(table) != CPLXSXP) {
PROTECT(ans = ScalarInteger(nmatch)); nprot++;
switch (type) {
case STRSXP: {
SEXP x_val = STRING_ELT(x,0);
- for (int i=0; i < LENGTH(itable); i++) if (STRING_ELT(table,i) == x_val) {
+ for (int i=0; i < LENGTH(itable); i++) if (Seql(STRING_ELT(table,i), x_val)) {
INTEGER(ans)[0] = i + 1; break;
}
break; }
@@ -897,7 +909,7 @@ SEXP match5(SEXP itable, SEXP ix, int nmatch, SEXP incomp, SEXP env)
Rcomplex x_val = COMPLEX(x)[0],
*table_p = COMPLEX(table);
for (int i=0; i < LENGTH(itable); i++)
- if (table_p[i].r == x_val.r && table_p[i].i == x_val.i) {
+ if (cplx_eq(table_p[i], x_val)) {
INTEGER(ans)[0] = i + 1; break;
}
break; }
@@ -958,7 +970,7 @@ SEXP match5(SEXP itable, SEXP ix, int nmatch, SEXP incomp, SEXP env)
DoHashing(table, &data);
if (incomp) UndoHashing(incomp, table, &data);
ans = HashLookup(table, x, &data);
-}
+ }
UNPROTECT(nprot);
return ans;
}
diff --git a/src/nmath/rgamma.c b/src/nmath/rgamma.c
index 4f08587..c18559c 100644
--- a/src/nmath/rgamma.c
+++ b/src/nmath/rgamma.c
@@ -1,7 +1,7 @@
/*
* Mathlib : A C Library of Special Functions
* Copyright (C) 1998 Ross Ihaka
- * Copyright (C) 2000--2008 The R Core Team
+ * Copyright (C) 2000--2016 The R Core Team
*
* This program is free software; you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
@@ -43,8 +43,9 @@
* poisson and binomial distributions.
* Computing, 12, 223-246.
*
- * Input: a = parameter (mean) of the standard gamma distribution.
- * Output: a variate from the gamma(a)-distribution
+ * Input : a = 'shape' = alpha,
+ * scale = 'scale' = 1/rate of the gamma distribution w/ mean E[.] = a * scale
+ * Output: a variate from the gamma(a, scale)-distribution
*/
#include "nmath.h"
@@ -85,14 +86,13 @@ double rgamma(double a, double scale)
double e, p, q, r, t, u, v, w, x, ret_val;
- if (!R_FINITE(a) || !R_FINITE(scale) || a < 0.0 || scale <= 0.0) {
- if(scale == 0.) return 0.;
+ if (a <= 0.0 || scale <= 0.0) {
+ if(scale == 0. || a == 0.) return 0.;
ML_ERR_return_NAN;
}
+ if(!R_FINITE(a) || !R_FINITE(scale)) return ML_POSINF;
if (a < 1.) { /* GS algorithm for parameters a < 1 */
- if(a == 0)
- return 0.;
e = 1.0 + exp_m1 * a;
repeat {
p = e * unif_rand();
diff --git a/src/unix/sys-std.c b/src/unix/sys-std.c
index c39595d..d573788 100644
--- a/src/unix/sys-std.c
+++ b/src/unix/sys-std.c
@@ -1,7 +1,7 @@
/*
* R : A Computer Language for Statistical Data Analysis
* Copyright (C) 1995, 1996 Robert Gentleman and Ross Ihaka
- * Copyright (C) 1997--2015 The R Core Team
+ * Copyright (C) 1997--2016 The R Core Team
*
* This program is free software; you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
@@ -379,7 +379,7 @@ void R_runHandlers(InputHandler *handlers, fd_set *readMask)
R_PolledEvents();
} else
while(tmp) {
- /* Do this way as the handler function might call
+ /* Do this way as the handler function might call
removeInputHandlers */
next = tmp->next;
if(FD_ISSET(tmp->fileDescriptor, readMask)
@@ -422,7 +422,8 @@ getSelectedHandler(InputHandler *handlers, fd_set *readMask)
# ifdef HAVE_READLINE_READLINE_H
# include <readline/readline.h>
-/* For compatibility with pre-readline4.2 systems: */
+/* For compatibility with pre-readline-4.2 systems,
+ also missing in Apple's emulation via the NetBSD editline library.*/
# if !defined (_RL_FUNCTION_TYPEDEF)
typedef void rl_vcpfunc_t (char *);
# endif /* _RL_FUNCTION_TYPEDEF */
@@ -432,6 +433,9 @@ extern void rl_callback_handler_install(const char *, rl_vcpfunc_t *);
extern void rl_callback_handler_remove(void);
extern void rl_callback_read_char(void);
extern char *tilde_expand (const char *);
+extern const char *rl_readline_name;
+/* Other externals are used, but only if the readline >= 6.3 is detected,
+ and that requires the header. */
# endif
attribute_hidden
@@ -524,10 +528,36 @@ pushReadline(const char *prompt, rl_vcpfunc_t f)
rl_callback_handler_install(prompt, f);
/* flush stdout in case readline wrote the prompt, but didn't flush
- stdout to make it visible. (needed for Apple's rl in OS X 10.4-pre) */
+ stdout to make it visible. (needed for Apple's readline emulation). */
fflush(stdout);
}
+#if defined(RL_READLINE_VERSION) && RL_READLINE_VERSION >= 0x0600
+/*
+ Fix for PR#16603.
+
+ The readline interface is somewhat messy. readline contains the
+ function rl_free_line_state(), which its internal SIGINT handler
+ calls. However, it only cancels keyboard macros and certain other
+ things: it does not clear the line. Also, as of readline 6.3, its
+ SIGINT handler is no longer triggered during our select() loop since
+ rl_callback_handler_install() no longer installs signal handlers.
+ So we have to catch the signal and do all the work ourselves to get
+ Bash-like behavior on Ctrl-C.
+ */
+static void resetReadline(void)
+{
+ rl_free_line_state();
+ rl_cleanup_after_signal();
+ RL_UNSETSTATE(RL_STATE_ISEARCH | RL_STATE_NSEARCH | RL_STATE_VIMOTION |
+ RL_STATE_NUMERICARG | RL_STATE_MULTIKEY);
+ /* The following two lines should be equivalent, but doing both
+ won't hurt. */
+ rl_line_buffer[rl_point = rl_end = rl_mark = 0] = 0;
+ rl_done = 1;
+}
+#endif
+
/*
Unregister the current readline handler and pop it from R's readline
stack, followed by re-registering the previous one.
@@ -535,6 +565,9 @@ pushReadline(const char *prompt, rl_vcpfunc_t f)
static void popReadline(void)
{
if(ReadlineStack.current > -1) {
+#if defined(RL_READLINE_VERSION) && RL_READLINE_VERSION >= 0x0600
+ resetReadline();
+#endif
rl_callback_handler_remove();
ReadlineStack.fun[ReadlineStack.current--] = NULL;
if(ReadlineStack.current > -1 && ReadlineStack.fun[ReadlineStack.current])
@@ -1082,7 +1115,7 @@ void attribute_hidden NORET Rstd_CleanUp(SA_TYPE saveact, int status, int runLas
R_setupHistory(); /* re-read the history size and filename */
stifle_history(R_HistorySize);
err = write_history(R_HistoryFile);
- if(err) warning(_("problem in saving the history file '%s'"),
+ if(err) warning(_("problem in saving the history file '%s'"),
R_HistoryFile);
}
# endif /* HAVE_READLINE_HISTORY_H */
@@ -1101,7 +1134,7 @@ void attribute_hidden NORET Rstd_CleanUp(SA_TYPE saveact, int status, int runLas
R_CleanTempDir();
if(saveact != SA_SUICIDE && R_CollectWarnings)
PrintWarnings(); /* from device close and (if run) .Last */
- if(ifp) {
+ if(ifp) {
fclose(ifp); /* input file from -f or --file= */
ifp = NULL; /* To avoid trying to close it again */
}
@@ -1291,7 +1324,7 @@ void Rsleep(double timeint)
for (;;) {
fd_set *what;
tm = R_MIN(tm, 2e9); /* avoid integer overflow */
-
+
int wt = -1;
if (R_wait_usec > 0) wt = R_wait_usec;
if (Rg_wait_usec > 0 && (wt < 0 || wt > Rg_wait_usec))
diff --git a/tests/Examples/datasets-Ex.Rout.save b/tests/Examples/datasets-Ex.Rout.save
index f2b936c..721eac4 100644
--- a/tests/Examples/datasets-Ex.Rout.save
+++ b/tests/Examples/datasets-Ex.Rout.save
@@ -1,5 +1,5 @@
-R version 3.3.0 beta (2016-04-19 r70517) -- "Supposedly Educational"
+R version 3.3.1 RC (2016-06-14 r70774) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)
@@ -3458,7 +3458,7 @@ c0 -5.14
> ###
> options(digits = 7L)
> base::cat("Time elapsed: ", proc.time() - base::get("ptime", pos = 'CheckExEnv'),"\n")
-Time elapsed: 1.279 0.032 1.31 0 0
+Time elapsed: 1.27 0.028 1.299 0 0
> grDevices::dev.off()
null device
1
diff --git a/tests/Examples/grDevices-Ex.Rout.save b/tests/Examples/grDevices-Ex.Rout.save
index 4a5aaf1..cb47923 100644
--- a/tests/Examples/grDevices-Ex.Rout.save
+++ b/tests/Examples/grDevices-Ex.Rout.save
@@ -1,5 +1,5 @@
-R version 3.3.0 beta (2016-04-19 r70517) -- "Supposedly Educational"
+R version 3.3.1 RC (2016-06-14 r70774) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)
@@ -3766,7 +3766,7 @@ $zlab
> ###
> options(digits = 7L)
> base::cat("Time elapsed: ", proc.time() - base::get("ptime", pos = 'CheckExEnv'),"\n")
-Time elapsed: 7.866 0.131 7.997 0 0
+Time elapsed: 7.675 0.138 7.813 0 0
> grDevices::dev.off()
null device
1
diff --git a/tests/Examples/graphics-Ex.Rout.save b/tests/Examples/graphics-Ex.Rout.save
index c65cdeb..c8af1b4 100644
--- a/tests/Examples/graphics-Ex.Rout.save
+++ b/tests/Examples/graphics-Ex.Rout.save
@@ -1,5 +1,5 @@
-R version 3.3.0 beta (2016-04-19 r70517) -- "Supposedly Educational"
+R version 3.3.1 RC (2016-06-14 r70774) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)
@@ -2066,7 +2066,7 @@ N
> points.default # to see how it calls "plot.xy(xy.coords(x, y), ...)"
function (x, y = NULL, type = "p", ...)
plot.xy(xy.coords(x, y), type = type, ...)
-<bytecode: 0x3173b18>
+<bytecode: 0x29093c8>
<environment: namespace:graphics>
>
>
@@ -2936,7 +2936,7 @@ function (xy = 1, warn.log = TRUE)
u <- par("usr")
xy * c(u[2L] - u[1L], u[4L] - u[3L])/par("pin")
}
-<bytecode: 0x34e1a40>
+<bytecode: 0x3ee75b0>
<environment: namespace:graphics>
>
> ## plot labels offset 0.12 inches to the right
@@ -3016,7 +3016,7 @@ function (xy = 1, warn.log = TRUE)
> ###
> options(digits = 7L)
> base::cat("Time elapsed: ", proc.time() - base::get("ptime", pos = 'CheckExEnv'),"\n")
-Time elapsed: 1.824 0.031 1.856 0 0
+Time elapsed: 1.809 0.027 1.836 0 0
> grDevices::dev.off()
null device
1
diff --git a/tests/Examples/grid-Ex.Rout.save b/tests/Examples/grid-Ex.Rout.save
index 2dc674a..83bf3b4 100644
--- a/tests/Examples/grid-Ex.Rout.save
+++ b/tests/Examples/grid-Ex.Rout.save
@@ -1,5 +1,5 @@
-R version 3.3.0 beta (2016-04-19 r70517) -- "Supposedly Educational"
+R version 3.3.1 RC (2016-06-14 r70774) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)
@@ -2069,7 +2069,7 @@ vp1::vp2
> ###
> options(digits = 7L)
> base::cat("Time elapsed: ", proc.time() - base::get("ptime", pos = 'CheckExEnv'),"\n")
-Time elapsed: 1.085 0.013 1.098 0 0
+Time elapsed: 1.098 0.007 1.105 0 0
> grDevices::dev.off()
null device
1
diff --git a/tests/Examples/splines-Ex.Rout.save b/tests/Examples/splines-Ex.Rout.save
index 1da0da1..f7c4a15 100644
--- a/tests/Examples/splines-Ex.Rout.save
+++ b/tests/Examples/splines-Ex.Rout.save
@@ -1,5 +1,5 @@
-R version 3.3.0 beta (2016-04-19 r70517) -- "Supposedly Educational"
+R version 3.3.1 RC (2016-06-14 r70774) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)
@@ -582,7 +582,7 @@ attr(,"class")
> ###
> options(digits = 7L)
> base::cat("Time elapsed: ", proc.time() - base::get("ptime", pos = 'CheckExEnv'),"\n")
-Time elapsed: 0.103 0.001 0.104 0 0
+Time elapsed: 0.153 0.005 0.159 0 0
> grDevices::dev.off()
null device
1
diff --git a/tests/Examples/stats-Ex.Rout.save b/tests/Examples/stats-Ex.Rout.save
index adf78be..4d44119 100644
--- a/tests/Examples/stats-Ex.Rout.save
+++ b/tests/Examples/stats-Ex.Rout.save
@@ -1,5 +1,5 @@
-R version 3.3.0 beta (2016-04-19 r70517) -- "Supposedly Educational"
+R version 3.3.1 RC (2016-06-14 r70774) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)
@@ -3792,7 +3792,7 @@ sigma^2 estimated as 0.4566: log likelihood = -101.2, aic = 212.4
>
> asOneSidedFormula("age")
~age
-<environment: 0x3a90348>
+<environment: 0x34aa138>
> asOneSidedFormula(~ age)
~age
>
@@ -4755,7 +4755,7 @@ function (V)
r[cbind(1L:p, 1L:p)] <- 1
r
}
-<bytecode: 0x3fb91c0>
+<bytecode: 0x370b258>
<environment: namespace:stats>
> stopifnot(all.equal(Cl, cov2cor(cov(longley))),
+ all.equal(cor(longley, method = "kendall"),
@@ -7285,7 +7285,7 @@ attr(,".Environment")
> environment(as.formula("y ~ x"))
<environment: R_GlobalEnv>
> environment(as.formula("y ~ x", env = new.env()))
-<environment: 0x3d7c080>
+<environment: 0x34f71e0>
>
>
> ## Create a formula for a model with a large number of variables:
@@ -11766,14 +11766,14 @@ attr(,"class")
$linkfun
function (mu)
mu^lambda
-<bytecode: 0x77bfa30>
-<environment: 0x77c74a8>
+<bytecode: 0x6f42160>
+<environment: 0x6f4ab40>
$linkinv
function (eta)
pmax(eta^(1/lambda), .Machine$double.eps)
-<bytecode: 0x77bf918>
-<environment: 0x77c74a8>
+<bytecode: 0x6f42fb0>
+<environment: 0x6f4ab40>
>
>
@@ -15771,8 +15771,8 @@ Step function with continuity 'f'= 0.2 , 3 knots at
> unclass(sfun0)
function (v)
.approxfun(x, y, v, method, yleft, yright, f)
-<bytecode: 0x3632aa8>
-<environment: 0x7b96318>
+<bytecode: 0x2d6cec8>
+<environment: 0x7356b68>
attr(,"call")
stepfun(1:3, y0, f = 0)
> ls(envir = environment(sfun0))
@@ -18049,7 +18049,7 @@ Number of Fisher Scoring iterations: 6
> ###
> options(digits = 7L)
> base::cat("Time elapsed: ", proc.time() - base::get("ptime", pos = 'CheckExEnv'),"\n")
-Time elapsed: 4.292 0.112 4.405 0 0
+Time elapsed: 4.26 0.087 4.348 0 0
> grDevices::dev.off()
null device
1
diff --git a/tests/Examples/stats4-Ex.Rout.save b/tests/Examples/stats4-Ex.Rout.save
index 876436d..2b07105 100644
--- a/tests/Examples/stats4-Ex.Rout.save
+++ b/tests/Examples/stats4-Ex.Rout.save
@@ -1,5 +1,5 @@
-R version 3.3.0 beta (2016-04-19 r70517) -- "Supposedly Educational"
+R version 3.3.1 RC (2016-06-14 r70774) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)
@@ -184,7 +184,7 @@ Coefficients:
> ###
> options(digits = 7L)
> base::cat("Time elapsed: ", proc.time() - base::get("ptime", pos = 'CheckExEnv'),"\n")
-Time elapsed: 0.294 0.002 0.296 0 0
+Time elapsed: 0.289 0.003 0.292 0 0
> grDevices::dev.off()
null device
1
diff --git a/tests/Examples/tools-Ex.Rout.save b/tests/Examples/tools-Ex.Rout.save
index 2f94852..9c0b84e 100644
--- a/tests/Examples/tools-Ex.Rout.save
+++ b/tests/Examples/tools-Ex.Rout.save
@@ -1,5 +1,5 @@
-R version 3.3.0 beta (2016-04-24 r70538) -- "Supposedly Educational"
+R version 3.3.1 RC (2016-06-14 r70774) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)
@@ -188,7 +188,7 @@ Error in assertWarning(ff()) :
> bibstyle("unsorted", sortKeys = function(refs) seq_along(refs),
+ fmtPrefix = function(paper) paste0("[", paper$.index, "]"),
+ .init = TRUE)
-<environment: 0x32e7c08>
+<environment: 0x3582e28>
> print(refs, .bibstyle = "unsorted")
[1] R Core Team (2013). _R: A Language and Environment for Statistical
Computing_. R Foundation for Statistical Computing, Vienna, Austria.
@@ -1015,7 +1015,7 @@ List of 6
> ###
> options(digits = 7L)
> base::cat("Time elapsed: ", proc.time() - base::get("ptime", pos = 'CheckExEnv'),"\n")
-Time elapsed: 0.18 0.004 0.182 0 0
+Time elapsed: 0.191 0.004 0.197 0 0
> grDevices::dev.off()
null device
1
diff --git a/tests/R-intro.Rout.save b/tests/R-intro.Rout.save
index b8abf40..b661b43 100644
--- a/tests/R-intro.Rout.save
+++ b/tests/R-intro.Rout.save
@@ -1,5 +1,5 @@
-R version 3.3.0 beta (2016-04-19 r70517) -- "Supposedly Educational"
+R version 3.3.1 RC (2016-06-14 r70774) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)
diff --git a/tests/any-all.Rout.save b/tests/any-all.Rout.save
index 9353654..934e02e 100644
--- a/tests/any-all.Rout.save
+++ b/tests/any-all.Rout.save
@@ -1,5 +1,5 @@
-R version 3.3.0 beta (2016-04-19 r70517) -- "Supposedly Educational"
+R version 3.3.1 RC (2016-06-14 r70774) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)
diff --git a/tests/arith-true.Rout.save b/tests/arith-true.Rout.save
index 86cc727..221732e 100644
--- a/tests/arith-true.Rout.save
+++ b/tests/arith-true.Rout.save
@@ -1,5 +1,5 @@
-R version 3.3.0 beta (2016-04-19 r70517) -- "Supposedly Educational"
+R version 3.3.1 RC (2016-06-14 r70774) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)
@@ -323,5 +323,5 @@ Warning messages:
>
> ## Last Line:
> cat('Time elapsed: ', proc.time() - .proctime00,'\n')
-Time elapsed: 0.136 0 0.136 0 0
+Time elapsed: 0.138 0.002 0.139 0 0
>
diff --git a/tests/arith.Rout.save b/tests/arith.Rout.save
index e7c666f..639cdc6 100644
--- a/tests/arith.Rout.save
+++ b/tests/arith.Rout.save
@@ -1,5 +1,5 @@
-R version 3.3.0 beta (2016-04-19 r70517) -- "Supposedly Educational"
+R version 3.3.1 RC (2016-06-14 r70774) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)
diff --git a/tests/complex.Rout.save b/tests/complex.Rout.save
index 66e33a1..5834e71 100644
--- a/tests/complex.Rout.save
+++ b/tests/complex.Rout.save
@@ -1,5 +1,5 @@
-R version 3.3.0 beta (2016-04-19 r70517) -- "Supposedly Educational"
+R version 3.3.1 RC (2016-06-14 r70774) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)
diff --git a/tests/d-p-q-r-tests.Rout.save b/tests/d-p-q-r-tests.Rout.save
index 664b180..2aaf0cf 100644
--- a/tests/d-p-q-r-tests.Rout.save
+++ b/tests/d-p-q-r-tests.Rout.save
@@ -1,5 +1,5 @@
-R version 3.3.0 beta (2016-04-19 r70517) -- "Supposedly Educational"
+R version 3.3.1 RC (2016-06-14 r70774) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)
@@ -1388,5 +1388,5 @@ N
>
>
> cat("Time elapsed: ", proc.time() - .ptime,"\n")
-Time elapsed: 0.966 0.011 0.978 0 0
+Time elapsed: 0.954 0.014 0.967 0 0
>
diff --git a/tests/datasets.Rout.save b/tests/datasets.Rout.save
index f792566..52b97aa 100644
--- a/tests/datasets.Rout.save
+++ b/tests/datasets.Rout.save
@@ -1,5 +1,5 @@
-R version 3.3.0 beta (2016-04-19 r70517) -- "Supposedly Educational"
+R version 3.3.1 RC (2016-06-14 r70774) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)
diff --git a/tests/datetime.Rout.save b/tests/datetime.Rout.save
index 2038cf4..5ff8863 100644
--- a/tests/datetime.Rout.save
+++ b/tests/datetime.Rout.save
@@ -1,5 +1,5 @@
-R version 3.3.0 beta (2016-04-19 r70517) -- "Supposedly Educational"
+R version 3.3.1 RC (2016-06-14 r70774) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)
diff --git a/tests/datetime2.Rout.save b/tests/datetime2.Rout.save
index 679ab8f..dddb9f3 100644
--- a/tests/datetime2.Rout.save
+++ b/tests/datetime2.Rout.save
@@ -1,5 +1,5 @@
-R version 3.3.0 beta (2016-04-19 r70517) -- "Supposedly Educational"
+R version 3.3.1 RC (2016-06-14 r70774) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)
diff --git a/tests/demos.Rout.save b/tests/demos.Rout.save
index 2c18b08..09f675a 100644
--- a/tests/demos.Rout.save
+++ b/tests/demos.Rout.save
@@ -1,5 +1,5 @@
-R version 3.3.0 beta (2016-04-19 r70517) -- "Supposedly Educational"
+R version 3.3.1 RC (2016-06-14 r70774) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)
@@ -115,8 +115,8 @@ List of 2
+ "\n\t starting with 'is.' :\t ",
+ sum(grepl("^is\\.", ls.base[base.is.f])), "\n", sep = "")
-Number of base objects: 1317
-Number of functions in base: 1275
+Number of base objects: 1318
+Number of functions in base: 1276
starting with 'is.' : 50
> ## 0.14 : 31
@@ -1510,5 +1510,5 @@ sm 3 3 3 3 4 4 4 4 2 2 2
> par(op)
>
> cat("Time elapsed: ", proc.time() - .ptime, "\n")
-Time elapsed: 1.039 0.021 1.06 0 0
+Time elapsed: 0.977 0.026 1.004 0 0
>
diff --git a/tests/eval-etc.Rout.save b/tests/eval-etc.Rout.save
index b94108d..4f3acf6 100644
--- a/tests/eval-etc.Rout.save
+++ b/tests/eval-etc.Rout.save
@@ -1,5 +1,5 @@
-R version 3.3.0 beta (2016-04-19 r70517) -- "Supposedly Educational"
+R version 3.3.1 RC (2016-06-14 r70774) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)
diff --git a/tests/iec60559.Rout.save b/tests/iec60559.Rout.save
index dddb683..f44f381 100644
--- a/tests/iec60559.Rout.save
+++ b/tests/iec60559.Rout.save
@@ -1,5 +1,5 @@
-R version 3.3.0 beta (2016-04-19 r70517) -- "Supposedly Educational"
+R version 3.3.1 RC (2016-06-14 r70774) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)
diff --git a/tests/internet.Rout.save b/tests/internet.Rout.save
index 2b46009..5a592f2 100644
--- a/tests/internet.Rout.save
+++ b/tests/internet.Rout.save
@@ -1,5 +1,5 @@
-R version 3.3.0 beta (2016-04-19 r70517) -- "Supposedly Educational"
+R version 3.3.1 RC (2016-06-14 r70774) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)
@@ -23,7 +23,7 @@ Type 'q()' to quit R.
>
> # test do_download.
> nrow(available.packages(contrib.url("http://cran.r-project.org")))
-[1] 8269
+[1] 8572
>
> # test url connections on http
> zz <- url("http://cran.r-project.org/")
diff --git a/tests/isas-tests.Rout.save b/tests/isas-tests.Rout.save
index 818dac2..aa1bd63 100644
--- a/tests/isas-tests.Rout.save
+++ b/tests/isas-tests.Rout.save
@@ -1,5 +1,5 @@
-R version 3.3.0 beta (2016-04-19 r70517) -- "Supposedly Educational"
+R version 3.3.1 RC (2016-06-14 r70774) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)
@@ -2568,6 +2568,6 @@ In as.dist.default(x) : non-square matrix
> f <- try(as.ts( x ), silent = TRUE)
> if(!inherits(f, 'try-error')) report(identical(f, as.ts( f )))
> cat('Time elapsed: ', proc.time() - .proctime00,'\n')
-Time elapsed: 0.132 0.011 0.142 0 0
+Time elapsed: 0.129 0.009 0.136 0 0
>
>
diff --git a/tests/lapack.Rout.save b/tests/lapack.Rout.save
index c808265..e8b45e3 100644
--- a/tests/lapack.Rout.save
+++ b/tests/lapack.Rout.save
@@ -1,5 +1,5 @@
-R version 3.3.0 beta (2016-04-19 r70517) -- "Supposedly Educational"
+R version 3.3.1 RC (2016-06-14 r70774) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)
diff --git a/tests/lm-tests.Rout.save b/tests/lm-tests.Rout.save
index b5fec9f..0ce9c7e 100644
--- a/tests/lm-tests.Rout.save
+++ b/tests/lm-tests.Rout.save
@@ -1,5 +1,5 @@
-R version 3.3.0 beta (2016-04-19 r70517) -- "Supposedly Educational"
+R version 3.3.1 RC (2016-06-14 r70774) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)
diff --git a/tests/method-dispatch.Rout.save b/tests/method-dispatch.Rout.save
index 4b24f44..5e26833 100644
--- a/tests/method-dispatch.Rout.save
+++ b/tests/method-dispatch.Rout.save
@@ -1,5 +1,5 @@
-R version 3.3.0 beta (2016-04-19 r70517) -- "Supposedly Educational"
+R version 3.3.1 RC (2016-06-14 r70774) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)
diff --git a/tests/ok-errors.Rout.save b/tests/ok-errors.Rout.save
index 9c21bcb..c9fc516 100644
--- a/tests/ok-errors.Rout.save
+++ b/tests/ok-errors.Rout.save
@@ -1,5 +1,5 @@
-R version 3.3.0 beta (2016-04-19 r70517) -- "Supposedly Educational"
+R version 3.3.1 RC (2016-06-14 r70774) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)
diff --git a/tests/p-r-random-tests.Rout.save b/tests/p-r-random-tests.Rout.save
index 5c49986..51174cd 100644
--- a/tests/p-r-random-tests.Rout.save
+++ b/tests/p-r-random-tests.Rout.save
@@ -1,5 +1,5 @@
-R version 3.3.0 beta (2016-04-19 r70517) -- "Supposedly Educational"
+R version 3.3.1 RC (2016-06-14 r70774) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)
@@ -278,6 +278,6 @@ f(df1 = 10, df2 = 2, ncp = 3) PASSED
>
>
> cat('Time elapsed: ', proc.time() - .proctime00,'\n')
-Time elapsed: 1.233 0.004 1.237 0 0
+Time elapsed: 1.202 0.003 1.205 0 0
>
>
diff --git a/tests/print-tests.Rout.save b/tests/print-tests.Rout.save
index 2988a84..fe79802 100644
--- a/tests/print-tests.Rout.save
+++ b/tests/print-tests.Rout.save
@@ -1,5 +1,5 @@
-R version 3.3.0 beta (2016-04-19 r70517) -- "Supposedly Educational"
+R version 3.3.1 RC (2016-06-14 r70774) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)
diff --git a/tests/r-strict-tst.R b/tests/r-strict-tst.R
index 65bd8dc..06e3539 100644
--- a/tests/r-strict-tst.R
+++ b/tests/r-strict-tst.R
@@ -50,3 +50,8 @@ set.seed(11)
rH <- rhyper(20, m=m, n=n, k=k) # now via qhyper() - may change!
stopifnot( is.finite(rH), 3 <= rH, rH <= 24) # allow slack for change
## gave all NA_integer_ in R < 3.3.0
+
+
+stopifnot(identical(rgamma(1, Inf), Inf),
+ identical(rgamma(1, 0, 0), 0))
+## gave NaN in R <= 3.3.0
diff --git a/tests/reg-IO.Rout.save b/tests/reg-IO.Rout.save
index 31954e7..c391b5d 100644
--- a/tests/reg-IO.Rout.save
+++ b/tests/reg-IO.Rout.save
@@ -1,5 +1,5 @@
-R version 3.3.0 beta (2016-04-19 r70517) -- "Supposedly Educational"
+R version 3.3.1 RC (2016-06-14 r70774) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)
diff --git a/tests/reg-IO2.Rout.save b/tests/reg-IO2.Rout.save
index aef2fc2..0753ce6 100644
--- a/tests/reg-IO2.Rout.save
+++ b/tests/reg-IO2.Rout.save
@@ -1,5 +1,5 @@
-R version 3.3.0 beta (2016-04-19 r70517) -- "Supposedly Educational"
+R version 3.3.1 RC (2016-06-14 r70774) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)
diff --git a/tests/reg-S4.Rout.save b/tests/reg-S4.Rout.save
index 298b43f..103ffab 100644
--- a/tests/reg-S4.Rout.save
+++ b/tests/reg-S4.Rout.save
@@ -1,5 +1,5 @@
-R version 3.3.0 beta (2016-04-19 r70517) -- "Supposedly Educational"
+R version 3.3.1 RC (2016-06-14 r70774) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)
diff --git a/tests/reg-examples3.Rout.save b/tests/reg-examples3.Rout.save
index 06ae470..4c5ad66 100644
--- a/tests/reg-examples3.Rout.save
+++ b/tests/reg-examples3.Rout.save
@@ -1,5 +1,5 @@
-R version 3.3.0 RC (2016-04-27 r70557) -- "Supposedly Educational"
+R version 3.3.1 RC (2016-06-14 r70774) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)
diff --git a/tests/reg-plot.Rout.save b/tests/reg-plot.Rout.save
index 8342a99..0260cc6 100644
--- a/tests/reg-plot.Rout.save
+++ b/tests/reg-plot.Rout.save
@@ -1,5 +1,5 @@
-R version 3.3.0 beta (2016-04-19 r70517) -- "Supposedly Educational"
+R version 3.3.1 RC (2016-06-14 r70774) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)
diff --git a/tests/reg-tests-1c.R b/tests/reg-tests-1c.R
index b2c9427..84bf433 100644
--- a/tests/reg-tests-1c.R
+++ b/tests/reg-tests-1c.R
@@ -399,7 +399,7 @@ stopifnot(identical(ans2, myFormula))
## PR#15753
-0x110p-5L
+0x110p-5L # (+ warning)
stopifnot(.Last.value == 8.5)
## was 272 with a garbled message in R 3.0.0 - 3.1.0.
@@ -1409,8 +1409,7 @@ chkPretty <- function(x, n = 5, min.n = NULL, ..., max.D = 1) {
n %/% 3 # pretty.default
}
pr <- pretty(x, n=n, min.n=min.n, ...)
- ## if debugging:
- pr <- grDevices:::prettyDate(x, n=n, min.n=min.n, ...)
+ ## if debugging: pr <- grDevices:::prettyDate(x, n=n, min.n=min.n, ...)
stopifnot(length(pr) >= (min.n+1),
## pretty(x, *) must cover range of x:
min(pr) <= min(x), max(x) <= max(pr))
@@ -1499,19 +1498,42 @@ stopifnot(identical(Ls.ok,
chkSeq <- function(st, x, n, max.D = if(n <= 4) 1 else if(n <= 10) 2 else 3, ...)
tryCatch(chkPretty(seq(x, by = st, length = 2), n = n, max.D=max.D, ...),
error = conditionMessage)
-c.ps <- lapply(nns, function(n) lapply(steps, chkSeq, x = t02, n = n))
-## ensure that all are ok *but* some which did not match 'n' well enough:
-cc.ps <- unlist(c.ps, recursive=FALSE)
-table(ok <- vapply(cc.ps, inherits, NA, what = "POSIXt"))
-errs <- unlist(cc.ps[!ok])
-stopifnot(startsWith(errs, prefix = "| |pretty(.)| - (n+1) |"))
-Ds <- as.numeric(sub(".*\\| = ([0-9]+) > max.*", "\\1", errs))
-table(Ds)
+prSeq.errs <- function(tt, nset, tSteps) {
+ stopifnot(length(tt) == 1)
+ c.ps <- lapply(nset, function(n) lapply(tSteps, chkSeq, x = tt, n = n))
+ ## ensure that all are ok *but* some which did not match 'n' well enough:
+ cc.ps <- unlist(c.ps, recursive=FALSE)
+ ok <- vapply(cc.ps, inherits, NA, what = "POSIXt")
+ errs <- unlist(cc.ps[!ok])
+ stopifnot(startsWith(errs, prefix = "| |pretty(.)| - (n+1) |"))
+ list(ok = ok,
+ Ds = as.numeric(sub(".*\\| = ([0-9]+) > max.*", "\\1", errs)))
+}
+r.t02 <- prSeq.errs(t02, nset = nns, tSteps = steps)
+table(r.t02 $ ok)
+table(r.t02 $ Ds -> Ds)
## Currently [may improve]
## 3 4 5 6 7 8
## 4 14 6 3 2 1
## ... and ensure we only improve:
stopifnot(length(Ds) <= 30, max(Ds) <= 8, sum(Ds) <= 138)
+## A Daylight saving time -- halfmonth combo:
+(tOz <- structure(c(1456837200, 1460728800), class = c("POSIXct", "POSIXt"),
+ tzone = "Australia/Sydney"))
+(pz <- pretty(tOz)) # failed in R 3.3.0, PR#16923
+stopifnot(length(pz) <= 6, # is 5
+ attr(dpz <- diff(pz), "units") == "days", sd(dpz) < 1.6)
+if(FALSE) { # save 0.4 sec
+ print(system.time(
+ r.tOz <- prSeq.errs(tOz[1], nset = nns, tSteps = steps)
+ ))
+ stopifnot(sum(r.tOz $ ok) >= 132,
+ max(r.tOz $ Ds -> DOz) <= 8, mean(DOz) < 4.5)
+}
+nn <- c(1:33,10*(4:9),100*(1+unique(sort(rpois(20,4)))))
+pzn <- lengths(lapply(nn, pretty, x=tOz))
+stopifnot(0.5 <= min(pzn/(nn+1)), max(pzn/(nn+1)) <= 1.5)
+
stopifnot(c("round.Date", "round.POSIXt") %in% as.character(methods(round)))
@@ -1560,3 +1582,39 @@ tsp(z) <- NULL
stopifnot(identical(class(z), "matrix"))
## kept "mts" in 3.2.4, PR#16769
+
+## match(x, t): fast algorithm for length-1 'x'
+## a) string 'x' when only encoding differs
+tmp <- "年付"
+tmp2 <- "\u5e74\u4ed8" ; Encoding(tmp2) <- "UTF-8"
+for(ex in list(c(tmp, tmp2), c("foo","foo"))) {
+ cat(sprintf("\n|%s|%s| :\n----------\n", ex[1], ex[2]))
+ for(enc in c("latin1", "UTF-8", "unknown")) { # , "MAC", "WINDOWS-1251"
+ cat(sprintf("%9s: ", enc))
+ tt <- ex[1]; Encoding(tt) <- enc; t2 <- ex[2]
+ if(identical(i1 <- ( tt %in% t2),
+ i2 <- (c(tt, "a") %in% t2)[1]))
+ cat(i1,"\n")
+ else
+ stop("differing: ", i1, ", ", i2)
+ }
+}
+outerID <- function(x,y, ...) outer(x,y, Vectorize(identical,c("x","y")), ...)
+## b) complex 'x' with different kinds of NaN
+x0 <- c(0,1, NA_real_, NaN)
+z <- outer(x0,x0, complex, length.out=1L)
+z <- c(z[is.na(z)], # <- of length 4 * 4 - 2*2 = 12
+ as.complex(NaN), as.complex(0/0), # <- typically these two differ in bits
+ complex(real = NaN), complex(imaginary = NaN),
+ NA_complex_, complex(real = NA), complex(imaginary = NA))
+## 1..12 all differ, then only [14] ("0/0") differs in first (low level):
+symnum(outerID(z,z, FALSE,FALSE,FALSE,FALSE))
+symnum(outerID(z,z))
+(mz <- match(z, z)) # currently different {NA,NaN} patterns differ - not in print()/format() _FIXME_
+stopifnot(identical(mz, c(1:4, 1L, 3L, 7:8, 2L, 4L, 8L, 12L, # <- would change after FIXME
+ rep(2L, 4), 7L, 1L, 1L)))
+zRI <- rbind(Re=Re(z), Im=Im(z)) # and see the pattern :
+print(cbind(format = format(z), t(zRI), mz), quote=FALSE)
+stopifnot(identical(mz, sapply(z, match, table = z)))
+## the latter has length(x) == 1 in match(x,*) and failed in R 3.3.0
+
diff --git a/tests/reg-tests-2.Rout.save b/tests/reg-tests-2.Rout.save
index d749d98..77c60d2 100644
--- a/tests/reg-tests-2.Rout.save
+++ b/tests/reg-tests-2.Rout.save
@@ -1,5 +1,5 @@
-R version 3.3.0 beta (2016-04-19 r70517) -- "Supposedly Educational"
+R version 3.3.1 RC (2016-06-14 r70774) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)
@@ -6405,15 +6405,15 @@ function ()
> print.function
function (x, ...)
- attr(*, "srcref")=Class 'srcref' atomic [1:8] 1 19 1 63 19 63 1 1
- .. ..- attr(*, "srcfile")=Classes 'srcfilecopy', 'srcfile' <environment: 0x3162d60>
+ .. ..- attr(*, "srcfile")=Classes 'srcfilecopy', 'srcfile' <environment: 0x4133960>
> f
function ()
- attr(*, "srcref")=Class 'srcref' atomic [1:8] 1 17 1 28 17 28 1 1
- .. ..- attr(*, "srcfile")=Classes 'srcfilecopy', 'srcfile' <environment: 0x3154fc0>
+ .. ..- attr(*, "srcfile")=Classes 'srcfilecopy', 'srcfile' <environment: 0x4125bf8>
- attr(*, "note")= chr "just a note"
- attr(*, "yada")=function ()
..- attr(*, "srcref")=Class 'srcref' atomic [1:8] 2 24 2 48 24 48 2 2
- .. .. ..- attr(*, "srcfile")=Classes 'srcfilecopy', 'srcfile' <environment: 0x3154fc0>
+ .. .. ..- attr(*, "srcfile")=Classes 'srcfilecopy', 'srcfile' <environment: 0x4125bf8>
> rm(print.function)
> ## auto-printing and printing differed up to R 2.9.x
>
diff --git a/tests/reg-tests-3.Rout.save b/tests/reg-tests-3.Rout.save
index 0b58f62..ce26f7e 100644
--- a/tests/reg-tests-3.Rout.save
+++ b/tests/reg-tests-3.Rout.save
@@ -1,5 +1,5 @@
-R version 3.3.0 beta (2016-04-19 r70517) -- "Supposedly Educational"
+R version 3.3.1 RC (2016-06-14 r70774) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)
diff --git a/tests/simple-true.Rout.save b/tests/simple-true.Rout.save
index 21a19c8..fef0b67 100644
--- a/tests/simple-true.Rout.save
+++ b/tests/simple-true.Rout.save
@@ -1,5 +1,5 @@
-R version 3.3.0 beta (2016-04-19 r70517) -- "Supposedly Educational"
+R version 3.3.1 RC (2016-06-14 r70774) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)
--
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