[pyfai] branch master updated (54d2ebe -> 3afaede)

Frédéric-Emmanuel Picca picca at moszumanska.debian.org
Wed Jun 8 14:34:17 UTC 2016


This is an automated email from the git hooks/post-receive script.

picca pushed a change to branch master
in repository pyfai.

      from  54d2ebe   fix for real the fabio patch
      adds  8fa81bf   configure pristine-tar=True in the gbp.conf file
      adds  f040225   update Files-Excluded in order to remove the pre-generated documentation
      adds  7e1d7e8   Imported Upstream version 0.12.0+dfsg
      adds  a36ae1e   Merge tag 'upstream/0.12.0+dfsg'
      adds  c71a844   update the copyright with the upstream one.
      adds  7e16929   update the rules file
      adds  85d7f89   git dch
      adds  2ec3406   relmove all pacth already merged by upstream
      adds  8a02dbe   fix for the documentation
      adds  ef4f799   skip test requiring network
      adds  e5246eb   still fixing the unittest
      adds  cf2f2b9   unittest...
      adds  7d8d99c   run the tests only for python2
      adds  7e77cbb   fix the sphinx documentation
      adds  d40636d   fix the privacy breach
      adds  54eb4f3   update the clean file to remove test generated files
      adds  585f6a9   refresh the sphinx patch
      adds  2dcf2a2   refresh patch
      adds  0866e60   remove a bunch of lintian warnings
      adds  a628485   fix the 0002 patch
      adds  036a1fd   add the autopkgtest
      adds  3afaede   release

No new revisions were added by this update.

Summary of changes:
 MANIFEST.in                                        |    22 +-
 PKG-INFO                                           |   242 +-
 README.txt => README.rst                           |   166 +-
 TODO.txt                                           |     3 +-
 benchmark/benchmark.py                             |    43 +-
 benchmark/benchmark_distortion.py                  |    35 +-
 benchmark/benchmark_ocl_csr3.py                    |    73 +-
 benchmark/benchmark_split.py                       |    27 +-
 bootstrap.py                                       |   156 +
 build-deb.sh                                       |    32 -
 build-deb7.sh                                      |    58 +
 build-deb8.sh                                      |   112 +
 calibration/Al.D                                   |    17 +
 calibration/Si.D                                   |   693 +
 calibration/moke.D                                 |    11 +
 copyright                                          |   163 +
 debian/changelog                                   |    14 +
 debian/control                                     |     5 +-
 debian/copyright                                   |   102 +-
 debian/gbp.conf                                    |     3 +-
 ...001-fix-pyFAI-when-third_party-is-missing.patch |   230 -
 .../0001-remove-useless-logic-in-conf.py.patch     |    43 +
 ...02-fix-from-upstream-python3-installation.patch |   468 -
 debian/patches/0002-skip-test-if-no-network.patch  |   142 +
 .../0003-fix-from-upstream-for-fabio-3.x.patch     |    71 -
 debian/patches/0003-use-the-system-mathjax.patch   |    26 +
 debian/patches/series                              |     6 +-
 debian/rules                                       |    24 +-
 debian/tests/control                               |    11 +
 debian/tests/python2                               |    12 +
 debian/tests/python2-dbg                           |    12 +
 debian/tests/python3                               |    12 +
 debian/tests/python3-dbg                           |    12 +
 doc/check_calib.1                                  |     2 +-
 doc/diff_map.1                                     |    95 +
 doc/diff_map.pdf                                   |   Bin 0 -> 5933 bytes
 doc/diff_tomo.1                                    |    16 +-
 doc/diff_tomo.pdf                                  |   Bin 5773 -> 5845 bytes
 doc/pyFAI-recalib.1                                |     2 +-
 doc/pyFAI.pdf                                      |   Bin 1478137 -> 5048164 bytes
 doc/source/api/pyFAI.rst                           |     7 +
 doc/source/biblio.rst                              |     3 +
 doc/source/calibration.rst                         |    78 +-
 doc/source/changelog.rst                           |   287 +-
 doc/source/conf.py                                 |     8 +-
 doc/source/coverage.rst                            |    38 +
 doc/source/detector.rst                            |    44 +-
 doc/source/ecosystem.rst                           |    54 +-
 doc/source/geometry.rst                            |    21 +-
 doc/source/index.rst                               |    45 +-
 doc/source/man/diff_map.rst                        |   100 +
 doc/source/man/diff_tomo.rst                       |     4 +-
 doc/source/man/diffmap_integrate.png               |   Bin 0 -> 64703 bytes
 doc/source/man/diffmap_main.png                    |   Bin 0 -> 72236 bytes
 doc/source/man/diffmap_running.png                 |   Bin 0 -> 47217 bytes
 doc/source/man/pyFAI-saxs.rst                      |    30 +-
 doc/source/man/pyFAI-waxs.rst                      |    40 +-
 doc/source/man/scripts.rst                         |    15 +-
 doc/source/operations/index.rst                    |    73 +-
 doc/source/operations/linux.rst                    |   119 +-
 doc/source/operations/macosx.rst                   |    88 +-
 doc/source/operations/windows.rst                  |   179 +-
 doc/source/project.rst                             |   278 +-
 doc/source/publications.rst                        |    28 +
 doc/source/pyFAI.rst                               |    46 +-
 doc/source/usage/cookbook/calibrate.rst            |   185 +-
 doc/source/usage/cookbook/fabio_viewer.png         |   Bin 0 -> 331769 bytes
 doc/source/usage/cookbook/index.rst                |    11 +-
 .../usage/cookbook/integration_with_python.rst     |     8 +-
 .../usage/cookbook/integration_with_scripts.rst    |     7 +-
 .../usage/cookbook/integration_with_the_gui.rst    |    16 +-
 doc/source/usage/cookbook/pyFAI-calib_1.png        |   Bin 0 -> 148816 bytes
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 .../tutorial/CCD_Calibration/CCD_calibration.ipynb |  1433 +
 .../tutorial/CCD_Calibration/CCD_calibration.rst   |   937 +
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 doc/source/usage/tutorial/Calibrant/index.ipynb    |   369 +
 doc/source/usage/tutorial/Calibrant/index.rst      |   236 +
 .../usage/tutorial/Calibrant/output_11_0.png       |   Bin 0 -> 213686 bytes
 .../usage/tutorial/Calibrant/output_14_0.png       |   Bin 0 -> 63788 bytes
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 .../usage/tutorial/Distortion/Distortion.ipynb     |   645 +
 .../usage/tutorial/Distortion/Distortion.rst       |   489 +
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 .../usage/tutorial/Introduction/introduction.ipynb |   670 +
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 doc/source/usage/tutorial/MakeCalibrant/LaB6.D     |  1444 +
 doc/source/usage/tutorial/MakeCalibrant/Po.D       |    13 +
 .../tutorial/MakeCalibrant/make_calibrant.ipynb    |   517 +
 .../tutorial/MakeCalibrant/make_calibrant.rst      |   361 +
 .../MultiGeometry-checkpoint.ipynb                 |   752 +
 .../tutorial/MultiGeometry/MultiGeometry.ipynb     |   928 +
 doc/source/usage/tutorial/MultiGeometry/index.rst  |   558 +
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 doc/source/usage/tutorial/Variance/Variance.ipynb  |   720 +
 doc/source/usage/tutorial/index.rst                |    29 +-
 doc/source/usage/tutorial/multi-geometry.rst       |    83 +
 gui/diffmap.ui                                     |   391 +
 gui/integration.ui                                 |     2 +-
 openCL/bitonic.cl                                  |    57 +-
 openCL/bsort.cl                                    |   261 -
 openCL/for_eclipse.h                               |    27 +
 openCL/preprocess.cl                               |    11 +-
 openCL/separate.cl                                 |   135 +
 {debian => package/debian}/changelog               |    17 -
 {debian => package/debian}/compat                  |     0
 {debian => package/debian}/control                 |    22 +-
 {debian => package/debian}/gbp.conf                |     0
 .../debian}/python-pyfai-doc.doc-base              |     0
 {debian => package/debian}/rules                   |    24 +-
 {debian => package/debian}/source/format           |     0
 {debian => package/debian}/watch                   |     0
 pyFAI-src/OCLFullSplit1D_template.py               |   146 -
 pyFAI-src/integrate_widget.py                      |   757 -
 pyFAI-src/units.py                                 |   109 -
 pyFAI.egg-info/PKG-INFO                            |   242 +-
 pyFAI.egg-info/SOURCES.txt                         |   568 +-
 pyFAI.egg-info/requires.txt                        |     5 +
 pyFAI.egg-info/top_level.txt                       |    22 -
 {pyFAI-src => pyFAI}/OCLFullSplit.py               |    76 +-
 {pyFAI-src => pyFAI}/__init__.py                   |    46 +-
 {pyFAI-src => pyFAI}/azimuthalIntegrator.py        |   322 +-
 .../benchmark.py => pyFAI/benchmark/__init__.py    |   304 +-
 {pyFAI-src => pyFAI}/blob_detection.py             |   198 +-
 {pyFAI-src => pyFAI}/calibrant.py                  |   186 +-
 {pyFAI-src => pyFAI}/calibration.py                |   561 +-
 pyFAI/decorators.py                                |    75 +
 {pyFAI-src => pyFAI}/detectors.py                  |   955 +-
 pyFAI/diffmap.py                                   |   516 +
 pyFAI/diffmap_widget.py                            |   533 +
 {pyFAI-src => pyFAI}/directories.py                |     0
 {pyFAI-src => pyFAI}/distortion.py                 |   328 +-
 pyFAI/ext/__init__.py                              |     0
 {src => pyFAI/ext}/_bispev.c                       |   670 +-
 {src => pyFAI/ext}/_bispev.pyx                     |     0
 {src => pyFAI/ext}/_blob.c                         |   590 +-
 {src => pyFAI/ext}/_blob.pyx                       |     0
 {src => pyFAI/ext}/_convolution.c                  |  7270 +--
 {src => pyFAI/ext}/_convolution.pyx                |    50 +-
 {src => pyFAI/ext}/_distortion.c                   | 45781 +++++++++++--------
 pyFAI/ext/_distortion.pyx                          |  1333 +
 {src => pyFAI/ext}/_distortionCSR.c                | 10978 +++--
 {src => pyFAI/ext}/_geometry.c                     | 12635 +++--
 pyFAI/ext/_geometry.pyx                            |   561 +
 pyFAI/ext/_tree.c                                  |  7027 +++
 pyFAI/ext/_tree.pyx                                |   154 +
 {src => pyFAI/ext}/bilinear.c                      | 24174 +++++-----
 {src => pyFAI/ext}/bilinear.pxi                    |     2 +-
 {src => pyFAI/ext}/bilinear.pyx                    |    63 +-
 pyFAI/ext/crc32.pxd                                |    27 +
 {src => pyFAI/ext}/fastcrc.c                       |   498 +-
 pyFAI/ext/fastcrc.pyx                              |    47 +
 src/marchingsquares.c => pyFAI/ext/histogram.c     |  8595 ++--
 pyFAI/ext/histogram.pyx                            |    44 +
 {src => pyFAI/ext}/histogram_nomp.pxi              |    68 +-
 {src => pyFAI/ext}/histogram_omp.pxi               |    77 +-
 src/_geometry.c => pyFAI/ext/marchingsquares.c     | 16676 +++----
 {src => pyFAI/ext}/marchingsquares.pyx             |    67 +-
 {src => pyFAI/ext}/morphology.c                    |  6638 ++-
 {src => pyFAI/ext}/morphology.pyx                  |    58 +-
 {src => pyFAI/ext}/numpy_common.pxi                |     0
 {src => pyFAI/ext}/reconstruct.c                   |  6861 ++-
 {src => pyFAI/ext}/reconstruct.pyx                 |    57 +-
 pyFAI/ext/regrid_common.pxi                        |    59 +
 {src => pyFAI/ext}/relabel.c                       |  6859 +--
 {src => pyFAI/ext}/relabel.pyx                     |    14 +-
 pyFAI/ext/sparse_common.pxi                        |    42 +
 src/sparse_csr.c => pyFAI/ext/sparse_utils.c       | 16878 ++++---
 pyFAI/ext/sparse_utils.pyx                         |   112 +
 {src => pyFAI/ext}/splitBBox.c                     | 10713 +++--
 {src => pyFAI/ext}/splitBBox.pyx                   |   283 +-
 .../ext/splitBBoxCSR.c                             | 34720 ++++++++------
 {src => pyFAI/ext}/splitBBoxCSR.pyx                |    77 +-
 {src => pyFAI/ext}/splitBBoxLUT.c                  |  7065 +--
 {src => pyFAI/ext}/splitBBoxLUT.pyx                |    55 +-
 {src => pyFAI/ext}/splitPixel.c                    | 11038 +++--
 {src => pyFAI/ext}/splitPixel.pyx                  |    56 +-
 {src => pyFAI/ext}/splitPixelFull.c                | 10982 +++--
 {src => pyFAI/ext}/splitPixelFull.pyx              |    53 +-
 {src => pyFAI/ext}/splitPixelFullCSR.c             | 27475 ++++++-----
 {src => pyFAI/ext}/splitPixelFullCSR.pyx           |    74 +-
 {src => pyFAI/ext}/splitPixelFullLUT.c             | 13189 +++---
 {src => pyFAI/ext}/splitPixelFullLUT.pyx           |    56 +-
 {src => pyFAI/ext}/splitPixelFullLUT_double.c      |  2406 +-
 {src => pyFAI/ext}/splitPixelFullLUT_double.pyx    |    44 +-
 pyFAI/ext/src/cpuid.c                              |    33 +
 {src => pyFAI/ext/src}/crc32.c                     |    20 +
 pyFAI/ext/src/crc32.h                              |    23 +
 {src => pyFAI/ext}/watershed.c                     |  2359 +-
 {src => pyFAI/ext}/watershed.pyx                   |     8 +-
 {pyFAI-src => pyFAI}/geometry.py                   |  1115 +-
 {pyFAI-src => pyFAI}/geometryRefinement.py         |    73 +-
 {pyFAI-src => pyFAI}/grid.py                       |    15 +-
 {pyFAI-src => pyFAI}/gui_utils.py                  |    37 +-
 pyFAI/integrate_widget.py                          |   764 +
 {pyFAI-src => pyFAI}/io.py                         |   168 +-
 {pyFAI-src => pyFAI}/massif.py                     |    40 +-
 {pyFAI-src => pyFAI}/multi_geometry.py             |    89 +-
 {pyFAI-src => pyFAI}/ocl_azim.py                   |    13 +-
 {pyFAI-src => pyFAI}/ocl_azim_csr.py               |    83 +-
 {pyFAI-src => pyFAI}/ocl_azim_csr_dis.py           |     2 +-
 {pyFAI-src => pyFAI}/ocl_azim_lut.py               |    65 +-
 {pyFAI-src => pyFAI}/ocl_hist_pixelsplit.py        |     6 +-
 pyFAI/ocl_sort.py                                  |   354 +
 {pyFAI-src => pyFAI}/opencl.py                     |    53 +-
 pyFAI/orderedset.py                                |    93 +
 {pyFAI-src => pyFAI}/peak_picker.py                |   125 +-
 {pyFAI-src => pyFAI}/processor.py                  |    18 +-
 {pyFAI-src => pyFAI}/refinment2D.py                |     2 +-
 {pyFAI-src => pyFAI}/spline.py                     |    47 +-
 pyFAI/test/__init__.py                             |    62 +
 pyFAI/test/test_all.py                             |   121 +
 {test => pyFAI/test}/test_azimuthal_integrator.py  |   119 +-
 {test => pyFAI/test}/test_bilinear.py              |    77 +-
 {test => pyFAI/test}/test_bispev.py                |    69 +-
 pyFAI/test/test_blob_detection.py                  |   100 +
 pyFAI/test/test_bug_regression.py                  |   197 +
 {test => pyFAI/test}/test_calibrant.py             |   124 +-
 pyFAI/test/test_convolution.py                     |    97 +
 {test => pyFAI/test}/test_csr.py                   |    79 +-
 {test => pyFAI/test}/test_detector.py              |    51 +-
 pyFAI/test/test_distortion.py                      |   260 +
 pyFAI/test/test_dummy.py                           |    62 +
 {test => pyFAI/test}/test_export.py                |    96 +-
 {test => pyFAI/test}/test_flat.py                  |    96 +-
 pyFAI/test/test_geometry.py                        |   381 +
 {test => pyFAI/test}/test_geometry_refinement.py   |    86 +-
 {test => pyFAI/test}/test_histogram.py             |   255 +-
 {test => pyFAI/test}/test_integrate.py             |    95 +-
 pyFAI/test/test_integrate_widget.py                |   168 +
 {test => pyFAI/test}/test_io.py                    |   109 +-
 pyFAI/test/test_marchingsquares.py                 |    75 +
 {test => pyFAI/test}/test_mask.py                  |   129 +-
 pyFAI/test/test_multi_geometry.py                  |   166 +
 pyFAI/test/test_ocl_sort.py                        |   133 +
 {test => pyFAI/test}/test_openCL.py                |   102 +-
 {test => pyFAI/test}/test_peak_picking.py          |   119 +-
 pyFAI/test/test_polarization.py                    |   109 +
 {test => pyFAI/test}/test_saxs.py                  |   101 +-
 pyFAI/test/test_sparse.py                          |   143 +
 {test => pyFAI/test}/test_split_pixel.py           |   102 +-
 pyFAI/test/test_utils.py                           |   175 +
 pyFAI/test/test_watershed.py                       |    75 +
 pyFAI/test/test_worker.py                          |   199 +
 {test => pyFAI/test}/utilstest.py                  |   256 +-
 pyFAI/tree.py                                      |   207 +
 pyFAI/units.py                                     |   241 +
 {pyFAI-src => pyFAI}/utils.py                      |    70 +-
 {pyFAI-src => pyFAI}/worker.py                     |   170 +-
 run_tests.py                                       |   375 +
 scripts/{pyFAI-recalib => diff_map}                |    53 +-
 scripts/diff_tomo                                  |   283 +-
 scripts/pyFAI-average                              |    12 +-
 scripts/pyFAI-benchmark                            |   102 +
 scripts/pyFAI-calib                                |    11 +-
 scripts/pyFAI-integrate                            |    37 +-
 scripts/pyFAI-saxs                                 |    37 +-
 scripts/pyFAI-waxs                                 |    26 +-
 scripts/refine_wavelength                          |   188 -
 setup.py                                           |   238 +-
 src/_distortion.pyx                                |  1210 -
 src/_distortionCSR.pyx                             |   533 -
 src/_geometry.pyx                                  |   355 -
 src/crc32.h                                        |     4 -
 src/crc32.pxd                                      |     6 -
 src/fastcrc.pyx                                    |    46 -
 src/histogram.c                                    | 21790 ---------
 src/histogram.pyx                                  |     4 -
 src/paraSplitBBox.pyx                              |   456 -
 src/regrid_common.pxi                              |    58 -
 src/sparse_csr.pyx                                 |    65 -
 src/splitBBoxCSR.c                                 | 38087 ---------------
 src/splitBBoxLUT_vector.pyx                        |  1108 -
 src/splitPixelFullLUT_b.c                          | 26701 -----------
 src/splitPixelFullLUT_b.pyx                        |   975 -
 src/splitPixelFullLUT_float32_b.c                  | 26712 -----------
 src/splitPixelFullLUT_float32_b.pyx                |  1018 -
 src/xutils.c                                       |  7224 ---
 src/xutils.pyx                                     |   122 -
 stdeb.cfg                                          |     3 -
 test/__init__.py                                   |    58 -
 test/all_testimages.json                           |     1 -
 test/blob.py                                       |   132 -
 test/bug-1280.py                                   |    21 -
 test/bug_ocl_cpu.py                                |     5 -
 test/check_calib.py                                |   188 -
 test/chi_square.py                                 |    60 -
 test/chi_square_ds8.py                             |    72 -
 test/debug_ocl_sort.py                             |    30 -
 test/debug_split_pixel.py                          |    22 -
 test/fai_cfg.json                                  |     4 -
 test/lima_cfg.json                                 |     1 -
 test/mactrace.py                                   |    55 -
 test/memleak.py                                    |    66 -
 test/moke.poni                                     |    10 -
 test/profileDistortionCSR.py                       |   144 -
 test/profile_OCLFullSplit.py                       |    39 -
 test/profile_csr.py                                |    64 -
 test/profile_csr_2d.py                             |    39 -
 test/profile_csr_all_platforms.py                  |    68 -
 test/profile_csr_fullsplit.py                      |    45 -
 test/profile_csr_padded_csr.py                     |   127 -
 test/profile_hdf5.py                               |    88 -
 test/profile_lut_pixelsplitFull.py                 |   203 -
 test/profile_ocl_hist_pixelsplit.py                |   127 -
 test/profile_ocl_lut.py                            |   112 -
 test/profile_ocl_lut_pixelsplit.py                 |   209 -
 test/profile_ocl_lut_pixelsplit2.py                |   188 -
 test/profile_ocl_lut_pixelsplit3.py                |   169 -
 test/profile_pixelsplitFull.py                     |   207 -
 test/profile_pixelsplitFullLUT.py                  |   124 -
 test/profile_pixelsplitFullLUT2.py                 |   126 -
 test/profile_splitPixelFullLUT.py                  |    60 -
 test/splitpixel_vs_splitpixelfull.py               |    20 -
 test/test_all.py                                   |   116 -
 test/test_blob_detection.py                        |    95 -
 test/test_bug_regression.py                        |    95 -
 test/test_convolution.py                           |    88 -
 test/test_distortion.py                            |   108 -
 test/test_dummy.py                                 |    59 -
 test/test_geometry.py                              |   240 -
 test/test_marchingsquares.py                       |    74 -
 test/test_multi_geometry.py                        |   125 -
 test/test_polarization.py                          |   105 -
 test/test_sparse.py                                |    87 -
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