[liggghts] branch master updated (739cac6 -> 5a30eaa)
Anton Gladky
gladk at moszumanska.debian.org
Wed Jun 15 21:34:04 UTC 2016
This is an automated email from the git hooks/post-receive script.
gladk pushed a change to branch master
in repository liggghts.
from 739cac6 Update changelog.
adds 6a5c2a8 Imported Upstream version 3.4.0+repack1
new 001d810 Merge branch 'upstream'
new 157da23 Refresh patches.
new 9a184e0 Apply cme fix dpkg.
new ea651a2 Update d/copyright.
new 573aeaf Refresh patch.
new 5a30eaa Update changelog.
The 6 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails. The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.
Summary of changes:
README | 2 +-
debian/changelog | 9 +
debian/control | 4 +-
debian/copyright | 2 +-
debian/patches/01_add_cmake_files.patch | 10 +-
debian/patches/05_vtk6_support.patch | 6 +-
.../3ccbfc7e7fb8a339ff2566034a8d6809e29c6f92.patch | 690 +
.../b7cc08a225cb25b5b5db3b2bd5e9728fc1f3a127.patch | 16 +
debian/patches/series | 2 +
doc/Eqs/cna_cutoff1.tex | 28 +-
doc/Eqs/cna_cutoff2.tex | 24 +-
doc/Eqs/eff_ECP1.tex | 16 +-
doc/Eqs/fix_wall_lj1043.tex | 22 +-
doc/Eqs/gran_model_hooke_hysteresis_1.png | Bin 0 -> 1122 bytes
...angle.tex => gran_model_hooke_hysteresis_1.tex} | 2 +-
doc/Eqs/gran_model_hooke_hysteresis_2.png | Bin 0 -> 2003 bytes
doc/Eqs/gran_model_hooke_hysteresis_2.tex | 12 +
doc/Eqs/heat_flux_k.tex | 22 +-
doc/Eqs/pair_comb1.tex | 14 +-
doc/Eqs/pair_comb2.tex | 44 +-
doc/JPG/hooke_hysteresis_luding1.png | Bin 0 -> 83485 bytes
doc/Manual.html | 240 +-
doc/Manual.pdf | Bin 3419668 -> 3387108 bytes
doc/Manual.txt | 42 +-
doc/Section_commands.html | 28 +-
doc/Section_commands.txt | 5 +-
doc/Section_commands_LAMMPS.html | 2 +-
doc/Section_commands_LAMMPS.txt | 2 +-
doc/Section_errors.html | 23 +-
doc/Section_errors.txt | 23 +-
doc/Section_gran_models.html | 42 +-
doc/Section_gran_models.txt | 42 +-
doc/Section_gran_models_prev.html | 2 +-
doc/Section_gran_models_prev.txt | 2 +-
doc/Section_howto.html | 2 +-
doc/Section_howto.txt | 2 +-
doc/Section_input_script.html | 6 +-
doc/Section_input_script.txt | 6 +-
doc/Section_intro.html | 2 +-
doc/Section_intro.txt | 2 +-
doc/Section_modify.html | 2 +-
doc/Section_modify.txt | 2 +-
doc/Section_packages.html | 2 +-
doc/Section_packages.txt | 2 +-
doc/Section_python.html | 2 +-
doc/Section_python.txt | 2 +-
doc/Section_start.html | 2 +-
doc/Section_start.txt | 2 +-
doc/atom_modify.html | 6 +-
doc/atom_modify.txt | 6 +-
doc/compute_coord_gran.txt | 4 +-
doc/compute_pair_gran_local.txt | 4 +-
doc/compute_rigid.txt | 4 +-
doc/dump.html | 4 +-
doc/dump.txt | 4 +-
doc/fix_insert_pack.html | 15 +-
doc/fix_insert_pack.txt | 15 +-
doc/fix_insert_rate_region.html | 17 +-
doc/fix_insert_rate_region.txt | 17 +-
doc/fix_insert_stream.html | 23 +-
doc/fix_insert_stream.txt | 23 +-
doc/fix_mesh_surface.html | 43 +-
doc/fix_mesh_surface.txt | 40 +-
doc/fix_mesh_surface_stress.html | 20 +-
doc/fix_mesh_surface_stress.txt | 16 +-
doc/fix_particletemplate_sphere.html | 26 +-
doc/fix_particletemplate_sphere.txt | 26 +-
doc/fix_poems.html | 123 +-
doc/fix_poems.txt | 68 +-
doc/fix_property_atom_timetracer.html | 82 +
doc/fix_property_atom_timetracer.txt | 73 +
doc/githubAccess_non-public.html | 8 +-
doc/githubAccess_non-public.txt | 9 +-
doc/githubAccess_public.html | 8 +-
doc/githubAccess_public.txt | 9 +-
doc/gran_cohesion_easo_capillary_viscous.html | 19 +-
doc/gran_cohesion_easo_capillary_viscous.txt | 17 +-
doc/gran_cohesion_sjkr.html | 19 +-
doc/gran_cohesion_sjkr.txt | 19 +-
doc/gran_cohesion_sjkr2.html | 18 +-
doc/gran_cohesion_sjkr2.txt | 17 +-
doc/gran_cohesion_washino_capillary_viscous.html | 37 +-
doc/gran_cohesion_washino_capillary_viscous.txt | 34 +-
doc/gran_model_hertz.html | 4 +-
doc/gran_model_hertz.txt | 4 +-
doc/gran_model_hertz_stiffness.html | 2 +-
doc/gran_model_hertz_stiffness.txt | 2 +-
doc/gran_model_hooke.html | 4 +-
doc/gran_model_hooke.txt | 4 +-
doc/gran_model_hooke_stiffness.html | 2 +-
doc/gran_model_hooke_stiffness.txt | 2 +-
doc/gran_rolling_friction_cdt.html | 2 +-
doc/gran_rolling_friction_cdt.txt | 2 +-
doc/gran_rolling_friction_epsd.html | 2 +-
doc/gran_rolling_friction_epsd.txt | 2 +-
doc/gran_rolling_friction_epsd2.html | 2 +-
doc/gran_rolling_friction_epsd2.txt | 2 +-
doc/gran_rolling_friction_epsd3.html | 2 +-
doc/gran_rolling_friction_epsd3.txt | 2 +-
doc/gran_surface_sphere.html | 2 +-
doc/gran_surface_sphere.txt | 2 +-
doc/gran_tangential_history.html | 4 +-
doc/gran_tangential_history.txt | 4 +-
doc/gran_tangential_no_history.html | 2 +-
doc/gran_tangential_no_history.txt | 2 +-
doc/install_liggghts_windows.html | 34 +-
doc/install_liggghts_windows.txt | 33 +-
doc/pair_gran.html | 28 +-
doc/pair_gran.txt | 25 +-
doc/pair_sph.html | 252 +-
doc/rerun.html | 201 -
doc/rerun.txt | 193 -
doc/set.html | 4 +
doc/set.txt | 4 +
.../heatTransferBed_paScal/pascal/in.pascal | 2 +-
.../chute_wear/meshes/simple_chute.stl | 22628 +++++++++----------
.../Tutorials_public/conveyor/meshes/box.stl | 144 +-
.../Tutorials_public/conveyor/meshes/conveyor.stl | 24 +-
.../Tutorials_public/insert_stream/meshes/face.stl | 1208 +-
.../Tutorials_public/mesh_tet/data/test.vtk | 6370 +++---
.../movingMeshGran/meshes/bucket.stl | 396 +-
src/MAKE/{Makefile.g++ => Makefile.g++_mingw64} | 20 +-
src/MAKE/Makefile.ubuntuVTK_debug | 6 +-
src/PASCAL/Install.sh | 7 +-
src/abstract_mesh.h | 2 +
src/associative_pointer_array.h | 7 +-
src/associative_pointer_array_I.h | 60 +-
src/atom.cpp | 4 +
src/bounding_box.h | 3 +
src/cohesion_model_easo_capillary_viscous.h | 19 +-
src/cohesion_model_sjkr.h | 8 +-
src/cohesion_model_sjkr2.h | 8 +-
src/cohesion_model_washino_capillary_viscous.h | 43 +-
src/comm.h | 2 +
src/compute_ke.cpp | 5 +
src/compute_nparticles_tracer_region.cpp | 2 +-
src/compute_pair_gran_local.cpp | 101 +-
src/compute_pair_gran_local.h | 61 +-
src/contact_models.cpp | 8 +-
src/contact_models.h | 10 +-
src/container_base.cpp | 72 +-
src/container_base.h | 45 +-
src/custom_value_tracker.cpp | 31 +-
src/custom_value_tracker.h | 25 +-
src/custom_value_tracker_I.h | 88 +-
src/domain_I.h | 20 +-
src/dump.h | 3 +
src/dump_atom_vtk.h | 2 +-
src/dump_local_gran_vtk.cpp | 1029 +
src/dump_local_gran_vtk.h | 172 +
src/dump_mesh_vtk.cpp | 124 +-
src/dump_mesh_vtk.h | 3 +
src/fix_base_liggghts.cpp | 218 +
..._property_atom_tracer.h => fix_base_liggghts.h} | 73 +-
src/fix_buoyancy.cpp | 40 +-
src/fix_buoyancy.h | 8 +-
src/fix_cfd_coupling_convection_impl.cpp | 294 +
...pecies.h => fix_cfd_coupling_convection_impl.h} | 46 +-
src/fix_cfd_coupling_convection_species.cpp | 13 +
src/fix_cfd_coupling_force.cpp | 72 +-
src/fix_cfd_coupling_force.h | 9 +
src/fix_contact_history.cpp | 34 +-
src/fix_contact_history_mesh.cpp | 68 +-
src/fix_contact_history_mesh.h | 11 +-
src/fix_contact_history_mesh_I.h | 52 +-
src/fix_heat_gran.h | 2 +-
src/fix_heat_gran_conduction.cpp | 2 +-
src/fix_insert.cpp | 81 +-
src/fix_insert.h | 5 +-
src/fix_insert_pack.cpp | 4 +-
src/fix_insert_stream.cpp | 4 +-
src/fix_massflow_mesh.cpp | 51 +-
src/fix_massflow_mesh.h | 2 +
src/fix_mesh.cpp | 28 +-
src/fix_mesh.h | 7 +-
src/fix_multisphere.h | 12 +-
src/fix_neighlist_mesh.cpp | 138 +-
src/fix_neighlist_mesh.h | 3 +
src/fix_particledistribution_discrete.cpp | 10 +
src/fix_property_atom.cpp | 16 +-
src/fix_property_atom.h | 3 +-
...tracer.cpp => fix_property_atom_timetracer.cpp} | 214 +-
...tom_tracer.h => fix_property_atom_timetracer.h} | 38 +-
src/fix_scalar_transport_equation.cpp | 212 +-
src/fix_scalar_transport_equation.h | 25 +
src/fix_template_multiplespheres.cpp | 51 +-
src/fix_template_multiplespheres.h | 5 +
src/fix_template_multisphere.cpp | 4 +-
src/fix_template_sphere.cpp | 13 +-
src/fix_wall_gran.cpp | 303 +-
src/fix_wall_gran.h | 108 +-
src/fix_wall_gran_base.h | 127 +-
src/general_container.h | 13 +-
src/general_container_I.h | 223 +-
src/global_properties.cpp | 88 +-
src/global_properties.h | 4 +
src/granular_pair_style.h | 2 +-
src/granular_wall.h | 5 +-
src/group.cpp | 39 +-
src/group.h | 3 +-
src/input.cpp | 30 +
src/input.h | 5 +
src/input_mesh_tri.cpp | 23 +-
src/input_mesh_tri.h | 10 +-
src/integrate.h | 2 +-
src/lammps.cpp | 7 +
src/lammps.h | 2 +
src/lmpwindows.h | 3 +
src/math_extra_liggghts.h | 15 +
src/modify.h | 1 +
src/multi_node_mesh.h | 8 +
src/multi_node_mesh_I.h | 11 +
src/multi_node_mesh_parallel_I.h | 10 +-
src/multisphere.h | 4 +
src/neigh_gran.cpp | 6 +-
src/normal_model_hertz.h | 17 +-
src/normal_model_hertz_stiffness.h | 2 +
src/normal_model_hooke.h | 2 +
src/normal_model_hooke_hysteresis.h | 2 +
src/normal_model_hooke_stiffness.h | 2 +
src/pair_gran.cpp | 1 +
src/pair_gran_base.h | 19 +-
src/pair_gran_proxy.cpp | 29 +-
src/pair_sph_artvisc_tenscorr.cpp | 4 +-
src/particleToInsert.cpp | 4 +-
src/particleToInsert.h | 4 +-
src/particleToInsert_multisphere.cpp | 2 +-
src/particleToInsert_multisphere.h | 2 +-
src/properties.cpp | 39 +-
src/properties.h | 12 +-
src/read_dump.cpp | 168 +-
src/read_dump.h | 5 +
src/reader_native.cpp | 25 +-
src/region.h | 3 +
src/region_mesh_tet.cpp | 12 +-
src/region_mesh_tet.h | 3 +-
src/region_neighbor_list.cpp | 481 +-
src/region_neighbor_list.h | 109 +-
..._neighbor_list.cpp => region_neighbor_list_I.h} | 361 +-
...r_list.h => region_neighbor_list_definitions.h} | 162 +-
src/rerun.cpp | 224 -
src/rerun.h | 87 -
src/rolling_model_epsd.h | 36 +-
src/scalar_container.h | 4 +-
src/settings.h | 1 +
src/{debug_liggghts.h => string_liggghts.h} | 47 +-
src/style_command.h | 1 -
src/style_dump.h | 1 +
src/style_fix.h | 3 +
src/surface_mesh.h | 8 +-
src/surface_mesh_I.h | 78 +-
src/surface_mesh_feature_remove.h | 1 +
...fix_dummy.h => surface_mesh_feature_remove_I.h} | 0
src/tangential_model_history.h | 2 +
src/tracking_mesh_I.h | 5 +-
src/tri_mesh.h | 9 +-
src/tri_mesh_I.h | 22 +-
src/universe.cpp | 3 +-
src/update.cpp | 4 +-
src/update.h | 4 +
src/utils.h | 13 +
src/variable.h | 3 +
src/vector_container.h | 4 +-
src/vector_liggghts.h | 43 +-
src/velocity.cpp | 6 +-
src/version_liggghts.h | 2 +-
src/version_liggghts.txt | 2 +-
267 files changed, 21986 insertions(+), 18896 deletions(-)
create mode 100644 debian/patches/3ccbfc7e7fb8a339ff2566034a8d6809e29c6f92.patch
create mode 100644 debian/patches/b7cc08a225cb25b5b5db3b2bd5e9728fc1f3a127.patch
create mode 100644 doc/Eqs/gran_model_hooke_hysteresis_1.png
copy doc/Eqs/{angle.tex => gran_model_hooke_hysteresis_1.tex} (52%)
create mode 100644 doc/Eqs/gran_model_hooke_hysteresis_2.png
create mode 100644 doc/Eqs/gran_model_hooke_hysteresis_2.tex
create mode 100644 doc/JPG/hooke_hysteresis_luding1.png
create mode 100644 doc/fix_property_atom_timetracer.html
create mode 100644 doc/fix_property_atom_timetracer.txt
delete mode 100644 doc/rerun.html
delete mode 100644 doc/rerun.txt
copy src/MAKE/{Makefile.g++ => Makefile.g++_mingw64} (85%)
create mode 100644 src/dump_local_gran_vtk.cpp
create mode 100644 src/dump_local_gran_vtk.h
create mode 100644 src/fix_base_liggghts.cpp
copy src/{fix_property_atom_tracer.h => fix_base_liggghts.h} (72%)
create mode 100644 src/fix_cfd_coupling_convection_impl.cpp
copy src/{fix_cfd_coupling_convection_species.h => fix_cfd_coupling_convection_impl.h} (71%)
copy src/{fix_property_atom_tracer.cpp => fix_property_atom_timetracer.cpp} (55%)
copy src/{fix_property_atom_tracer.h => fix_property_atom_timetracer.h} (81%)
copy src/{region_neighbor_list.cpp => region_neighbor_list_I.h} (58%)
copy src/{region_neighbor_list.h => region_neighbor_list_definitions.h} (58%)
delete mode 100644 src/rerun.cpp
delete mode 100644 src/rerun.h
copy src/{debug_liggghts.h => string_liggghts.h} (79%)
create mode 100644 src/surface_mesh_feature_remove.h
copy src/{fix_dummy.h => surface_mesh_feature_remove_I.h} (100%)
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