[r-cran-kernlab] 01/01: Imported Debian patch 0.9-24-1
Joost van Baal
joostvb at moszumanska.debian.org
Wed Jun 22 12:38:58 UTC 2016
This is an automated email from the git hooks/post-receive script.
joostvb pushed a commit to branch master
in repository r-cran-kernlab.
commit bf1c139e5fc70e061ce4eb2bafde997630b31786
Author: Dirk Eddelbuettel <edd at debian.org>
Date: Wed Mar 30 17:02:40 2016 -0500
Imported Debian patch 0.9-24-1
---
debian/README.source | 33 ++++
debian/changelog | 49 ++++++
debian/compat | 1 +
debian/control | 17 ++
debian/copyright | 437 +++++++++++++++++++++++++++++++++++++++++++++++++++
debian/rules | 6 +
debian/source/format | 1 +
debian/watch | 2 +
8 files changed, 546 insertions(+)
diff --git a/debian/README.source b/debian/README.source
new file mode 100644
index 0000000..0a32a6e
--- /dev/null
+++ b/debian/README.source
@@ -0,0 +1,33 @@
+
+Explanation for binary files inside source package according to
+ http://lists.debian.org/debian-devel/2013/09/msg00332.html
+
+Files: data/income.rda
+Documentation: man/income.Rd
+ -> Customer income data from a marketing survey
+
+Files: data/musk.rda
+Documentation: man/musk.Rd
+ -> Set of 92 molecules of which 47 are judged by human experts to be musks and the remaining 45 molecules are judged to be non-musks
+
+Files: data/promotergene.rda
+Documentation: man/promotergene.Rd
+ -> E. coli promoter gene sequences (DNA)
+
+Files: data/reuters.rda
+Documentation: man/reuters.Rd
+ -> Small sample from a Reuters news data set
+
+Files: data/spam.rda
+Documentation: man/spam.Rd
+ -> Data set collected at HP classifying 4601 emails as spam or non-spam
+
+Files: data/spirals.rda
+Documentation: man/spirals.Rd
+ -> A toy data set representing two spirals with Gaussian noise generated via function mlbench.spirals from the mlbenc package (on CRAN)
+
+Files: data/ticdata.rda
+Documentation: man/ticdata.Rd
+ -> Data set used in the CoIL 2000 Challenge contains information on customers of an insurance company
+
+ -- Dirk Eddelbuettel <edd at debian.org>, Tue, 25 Nov 2014 20:44:51 -0600
diff --git a/debian/changelog b/debian/changelog
new file mode 100644
index 0000000..bfb9478
--- /dev/null
+++ b/debian/changelog
@@ -0,0 +1,49 @@
+r-cran-kernlab (0.9-24-1) unstable; urgency=medium
+
+ * New upstream release
+
+ * debian/control: Set Build-Depends: to current R version
+
+ -- Dirk Eddelbuettel <edd at debian.org> Wed, 30 Mar 2016 17:02:40 -0500
+
+r-cran-kernlab (0.9-23-1) unstable; urgency=low
+
+ * New upstream release
+
+ -- Dirk Eddelbuettel <edd at debian.org> Wed, 27 Jan 2016 16:33:36 -0600
+
+r-cran-kernlab (0.9-22-1) unstable; urgency=low
+
+ * New upstream release
+
+ * debian/control: Set Build-Depends: to current R version
+
+ -- Dirk Eddelbuettel <edd at debian.org> Wed, 05 Aug 2015 15:11:28 -0500
+
+r-cran-kernlab (0.9-20-3) unstable; urgency=low
+
+ * debian/copyright: Included full copy of the MPL
+
+ -- Dirk Eddelbuettel <edd at debian.org> Mon, 09 Feb 2015 12:59:16 -0600
+
+r-cran-kernlab (0.9-20-2) unstable; urgency=low
+
+ * debian/README.source: Corrected accidental naming as README.sources
+
+ -- Dirk Eddelbuettel <edd at debian.org> Wed, 21 Jan 2015 21:01:45 -0600
+
+r-cran-kernlab (0.9-20-1) unstable; urgency=low
+
+ * New upstream release
+
+ * debian/control: Set Standards-Version: to current version
+
+ -- Dirk Eddelbuettel <edd at debian.org> Sat, 10 Jan 2015 08:43:42 -0600
+
+r-cran-kernlab (0.9-19-1) unstable; urgency=low
+
+ * Initial Debian release (Closes: #771031)
+
+ -- Dirk Eddelbuettel <edd at debian.org> Wed, 26 Nov 2014 16:39:08 -0600
+
+
diff --git a/debian/compat b/debian/compat
new file mode 100644
index 0000000..7f8f011
--- /dev/null
+++ b/debian/compat
@@ -0,0 +1 @@
+7
diff --git a/debian/control b/debian/control
new file mode 100644
index 0000000..8d673ea
--- /dev/null
+++ b/debian/control
@@ -0,0 +1,17 @@
+Source: r-cran-kernlab
+Section: gnu-r
+Priority: optional
+Maintainer: Dirk Eddelbuettel <edd at debian.org>
+Build-Depends: debhelper (>= 7.0.0), r-base-dev (>= 3.2.4), cdbs
+Standards-Version: 3.9.6
+
+Package: r-cran-kernlab
+Architecture: any
+Depends: ${shlibs:Depends}, ${misc:Depends}, ${R:Depends}
+Description: GNU R package for kernel-based machine learning lab
+ The kernlab package provides kernel-based machine learning methods
+ for classification, regression, clustering, novelty detection,
+ quantile regression and dimensionality reduction. Among other
+ methods kernlab includes Support Vector Machines, Spectral
+ Clustering, Kernel PCA, Gaussian Processes and a QP solver.
+
diff --git a/debian/copyright b/debian/copyright
new file mode 100644
index 0000000..3c62b95
--- /dev/null
+++ b/debian/copyright
@@ -0,0 +1,437 @@
+This is the Debian GNU/Linux r-cran-kernlab package of kernlab. The
+kernlab package provides kernel-based machine learning methods. It
+was written by Alexandros Karatzoglou, Alex Smola and Kurt Hornik.
+
+This package was created by Dirk Eddelbuettel <edd at debian.org>.
+The sources were downloaded from the main CRAN site
+ http://cran.r-project.org/src/contrib/
+and are also available from all CRAN mirrors as e.g.
+ http://cran.us.r-project.org/src/contrib/
+
+The package was renamed from its upstream name 'kernlab' to
+'r-cran-kernlab' to fit the pattern of CRAN (and non-CRAN) packages
+for R.
+
+
+Files: R/*
+Copyright: 2002 - 2012 Alexandros Karatzoglou
+Portions Copyright: 2002 Alex Smola
+License: GPL-2+
+
+Files: src/*
+Copyright: 2002 - 2006 Alexandros Karatzoglou
+Portions Copyright: 2006 Statistical Machine Learning Program (SML), National ICT Australia (NICTA).
+Portions Copyright: 2006 Choon Hui Teo and S V N Vishwanathan
+Portions Copyright: 2006 Michael A. Maniscalco
+License: MPL-2
+
+Files: debian/*
+Copyright: 2014 Dirk Eddelbuettel <edd at debian.org>
+License: GPL-2+
+
+On a Debian GNU/Linux system, the GPL license (version 2) is included in the file
+/usr/share/common-licenses/GPL-2. The MPL-2 license is included as a complete copy below;
+the text was retrieved from https://www.mozilla.org/MPL/2.0/index.txt.
+
+For reference, the upstream DESCRIPTION file is included below:
+
+ Package: kernlab
+ Version: 0.9-19
+ Title: Kernel-based Machine Learning Lab
+ Authors at R: c(person("Alexandros", "Karatzoglou", role = c("aut", "cre"),
+ email = "alexis at ci.tuwien.ac.at"),
+ person("Alex", "Smola", role = "aut"),
+ person("Kurt", "Hornik", role = "aut"))
+ Description: Kernel-based machine learning methods for classification,
+ regression, clustering, novelty detection, quantile regression
+ and dimensionality reduction. Among other methods kernlab
+ includes Support Vector Machines, Spectral Clustering, Kernel
+ PCA, Gaussian Processes and a QP solver.
+ Depends: R (>= 2.10), methods
+ LazyLoad: Yes
+ License: GPL-2
+ Packaged: 2013-11-03 09:51:43 UTC; hornik
+ Author: Alexandros Karatzoglou [aut, cre],
+ Alex Smola [aut],
+ Kurt Hornik [aut]
+ Maintainer: Alexandros Karatzoglou <alexis at ci.tuwien.ac.at>
+ NeedsCompilation: yes
+ Repository: CRAN
+ Date/Publication: 2013-11-03 17:56:08
+
+
+
+
+Mozilla Public License Version 2.0
+==================================
+
+1. Definitions
+--------------
+
+1.1. "Contributor"
+ means each individual or legal entity that creates, contributes to
+ the creation of, or owns Covered Software.
+
+1.2. "Contributor Version"
+ means the combination of the Contributions of others (if any) used
+ by a Contributor and that particular Contributor's Contribution.
+
+1.3. "Contribution"
+ means Covered Software of a particular Contributor.
+
+1.4. "Covered Software"
+ means Source Code Form to which the initial Contributor has attached
+ the notice in Exhibit A, the Executable Form of such Source Code
+ Form, and Modifications of such Source Code Form, in each case
+ including portions thereof.
+
+1.5. "Incompatible With Secondary Licenses"
+ means
+
+ (a) that the initial Contributor has attached the notice described
+ in Exhibit B to the Covered Software; or
+
+ (b) that the Covered Software was made available under the terms of
+ version 1.1 or earlier of the License, but not also under the
+ terms of a Secondary License.
+
+1.6. "Executable Form"
+ means any form of the work other than Source Code Form.
+
+1.7. "Larger Work"
+ means a work that combines Covered Software with other material, in
+ a separate file or files, that is not Covered Software.
+
+1.8. "License"
+ means this document.
+
+1.9. "Licensable"
+ means having the right to grant, to the maximum extent possible,
+ whether at the time of the initial grant or subsequently, any and
+ all of the rights conveyed by this License.
+
+1.10. "Modifications"
+ means any of the following:
+
+ (a) any file in Source Code Form that results from an addition to,
+ deletion from, or modification of the contents of Covered
+ Software; or
+
+ (b) any new file in Source Code Form that contains any Covered
+ Software.
+
+1.11. "Patent Claims" of a Contributor
+ means any patent claim(s), including without limitation, method,
+ process, and apparatus claims, in any patent Licensable by such
+ Contributor that would be infringed, but for the grant of the
+ License, by the making, using, selling, offering for sale, having
+ made, import, or transfer of either its Contributions or its
+ Contributor Version.
+
+1.12. "Secondary License"
+ means either the GNU General Public License, Version 2.0, the GNU
+ Lesser General Public License, Version 2.1, the GNU Affero General
+ Public License, Version 3.0, or any later versions of those
+ licenses.
+
+1.13. "Source Code Form"
+ means the form of the work preferred for making modifications.
+
+1.14. "You" (or "Your")
+ means an individual or a legal entity exercising rights under this
+ License. For legal entities, "You" includes any entity that
+ controls, is controlled by, or is under common control with You. For
+ purposes of this definition, "control" means (a) the power, direct
+ or indirect, to cause the direction or management of such entity,
+ whether by contract or otherwise, or (b) ownership of more than
+ fifty percent (50%) of the outstanding shares or beneficial
+ ownership of such entity.
+
+2. License Grants and Conditions
+--------------------------------
+
+2.1. Grants
+
+Each Contributor hereby grants You a world-wide, royalty-free,
+non-exclusive license:
+
+(a) under intellectual property rights (other than patent or trademark)
+ Licensable by such Contributor to use, reproduce, make available,
+ modify, display, perform, distribute, and otherwise exploit its
+ Contributions, either on an unmodified basis, with Modifications, or
+ as part of a Larger Work; and
+
+(b) under Patent Claims of such Contributor to make, use, sell, offer
+ for sale, have made, import, and otherwise transfer either its
+ Contributions or its Contributor Version.
+
+2.2. Effective Date
+
+The licenses granted in Section 2.1 with respect to any Contribution
+become effective for each Contribution on the date the Contributor first
+distributes such Contribution.
+
+2.3. Limitations on Grant Scope
+
+The licenses granted in this Section 2 are the only rights granted under
+this License. No additional rights or licenses will be implied from the
+distribution or licensing of Covered Software under this License.
+Notwithstanding Section 2.1(b) above, no patent license is granted by a
+Contributor:
+
+(a) for any code that a Contributor has removed from Covered Software;
+ or
+
+(b) for infringements caused by: (i) Your and any other third party's
+ modifications of Covered Software, or (ii) the combination of its
+ Contributions with other software (except as part of its Contributor
+ Version); or
+
+(c) under Patent Claims infringed by Covered Software in the absence of
+ its Contributions.
+
+This License does not grant any rights in the trademarks, service marks,
+or logos of any Contributor (except as may be necessary to comply with
+the notice requirements in Section 3.4).
+
+2.4. Subsequent Licenses
+
+No Contributor makes additional grants as a result of Your choice to
+distribute the Covered Software under a subsequent version of this
+License (see Section 10.2) or under the terms of a Secondary License (if
+permitted under the terms of Section 3.3).
+
+2.5. Representation
+
+Each Contributor represents that the Contributor believes its
+Contributions are its original creation(s) or it has sufficient rights
+to grant the rights to its Contributions conveyed by this License.
+
+2.6. Fair Use
+
+This License is not intended to limit any rights You have under
+applicable copyright doctrines of fair use, fair dealing, or other
+equivalents.
+
+2.7. Conditions
+
+Sections 3.1, 3.2, 3.3, and 3.4 are conditions of the licenses granted
+in Section 2.1.
+
+3. Responsibilities
+-------------------
+
+3.1. Distribution of Source Form
+
+All distribution of Covered Software in Source Code Form, including any
+Modifications that You create or to which You contribute, must be under
+the terms of this License. You must inform recipients that the Source
+Code Form of the Covered Software is governed by the terms of this
+License, and how they can obtain a copy of this License. You may not
+attempt to alter or restrict the recipients' rights in the Source Code
+Form.
+
+3.2. Distribution of Executable Form
+
+If You distribute Covered Software in Executable Form then:
+
+(a) such Covered Software must also be made available in Source Code
+ Form, as described in Section 3.1, and You must inform recipients of
+ the Executable Form how they can obtain a copy of such Source Code
+ Form by reasonable means in a timely manner, at a charge no more
+ than the cost of distribution to the recipient; and
+
+(b) You may distribute such Executable Form under the terms of this
+ License, or sublicense it under different terms, provided that the
+ license for the Executable Form does not attempt to limit or alter
+ the recipients' rights in the Source Code Form under this License.
+
+3.3. Distribution of a Larger Work
+
+You may create and distribute a Larger Work under terms of Your choice,
+provided that You also comply with the requirements of this License for
+the Covered Software. If the Larger Work is a combination of Covered
+Software with a work governed by one or more Secondary Licenses, and the
+Covered Software is not Incompatible With Secondary Licenses, this
+License permits You to additionally distribute such Covered Software
+under the terms of such Secondary License(s), so that the recipient of
+the Larger Work may, at their option, further distribute the Covered
+Software under the terms of either this License or such Secondary
+License(s).
+
+3.4. Notices
+
+You may not remove or alter the substance of any license notices
+(including copyright notices, patent notices, disclaimers of warranty,
+or limitations of liability) contained within the Source Code Form of
+the Covered Software, except that You may alter any license notices to
+the extent required to remedy known factual inaccuracies.
+
+3.5. Application of Additional Terms
+
+You may choose to offer, and to charge a fee for, warranty, support,
+indemnity or liability obligations to one or more recipients of Covered
+Software. However, You may do so only on Your own behalf, and not on
+behalf of any Contributor. You must make it absolutely clear that any
+such warranty, support, indemnity, or liability obligation is offered by
+You alone, and You hereby agree to indemnify every Contributor for any
+liability incurred by such Contributor as a result of warranty, support,
+indemnity or liability terms You offer. You may include additional
+disclaimers of warranty and limitations of liability specific to any
+jurisdiction.
+
+4. Inability to Comply Due to Statute or Regulation
+---------------------------------------------------
+
+If it is impossible for You to comply with any of the terms of this
+License with respect to some or all of the Covered Software due to
+statute, judicial order, or regulation then You must: (a) comply with
+the terms of this License to the maximum extent possible; and (b)
+describe the limitations and the code they affect. Such description must
+be placed in a text file included with all distributions of the Covered
+Software under this License. Except to the extent prohibited by statute
+or regulation, such description must be sufficiently detailed for a
+recipient of ordinary skill to be able to understand it.
+
+5. Termination
+--------------
+
+5.1. The rights granted under this License will terminate automatically
+if You fail to comply with any of its terms. However, if You become
+compliant, then the rights granted under this License from a particular
+Contributor are reinstated (a) provisionally, unless and until such
+Contributor explicitly and finally terminates Your grants, and (b) on an
+ongoing basis, if such Contributor fails to notify You of the
+non-compliance by some reasonable means prior to 60 days after You have
+come back into compliance. Moreover, Your grants from a particular
+Contributor are reinstated on an ongoing basis if such Contributor
+notifies You of the non-compliance by some reasonable means, this is the
+first time You have received notice of non-compliance with this License
+from such Contributor, and You become compliant prior to 30 days after
+Your receipt of the notice.
+
+5.2. If You initiate litigation against any entity by asserting a patent
+infringement claim (excluding declaratory judgment actions,
+counter-claims, and cross-claims) alleging that a Contributor Version
+directly or indirectly infringes any patent, then the rights granted to
+You by any and all Contributors for the Covered Software under Section
+2.1 of this License shall terminate.
+
+5.3. In the event of termination under Sections 5.1 or 5.2 above, all
+end user license agreements (excluding distributors and resellers) which
+have been validly granted by You or Your distributors under this License
+prior to termination shall survive termination.
+
+************************************************************************
+* *
+* 6. Disclaimer of Warranty *
+* ------------------------- *
+* *
+* Covered Software is provided under this License on an "as is" *
+* basis, without warranty of any kind, either expressed, implied, or *
+* statutory, including, without limitation, warranties that the *
+* Covered Software is free of defects, merchantable, fit for a *
+* particular purpose or non-infringing. The entire risk as to the *
+* quality and performance of the Covered Software is with You. *
+* Should any Covered Software prove defective in any respect, You *
+* (not any Contributor) assume the cost of any necessary servicing, *
+* repair, or correction. This disclaimer of warranty constitutes an *
+* essential part of this License. No use of any Covered Software is *
+* authorized under this License except under this disclaimer. *
+* *
+************************************************************************
+
+************************************************************************
+* *
+* 7. Limitation of Liability *
+* -------------------------- *
+* *
+* Under no circumstances and under no legal theory, whether tort *
+* (including negligence), contract, or otherwise, shall any *
+* Contributor, or anyone who distributes Covered Software as *
+* permitted above, be liable to You for any direct, indirect, *
+* special, incidental, or consequential damages of any character *
+* including, without limitation, damages for lost profits, loss of *
+* goodwill, work stoppage, computer failure or malfunction, or any *
+* and all other commercial damages or losses, even if such party *
+* shall have been informed of the possibility of such damages. This *
+* limitation of liability shall not apply to liability for death or *
+* personal injury resulting from such party's negligence to the *
+* extent applicable law prohibits such limitation. Some *
+* jurisdictions do not allow the exclusion or limitation of *
+* incidental or consequential damages, so this exclusion and *
+* limitation may not apply to You. *
+* *
+************************************************************************
+
+8. Litigation
+-------------
+
+Any litigation relating to this License may be brought only in the
+courts of a jurisdiction where the defendant maintains its principal
+place of business and such litigation shall be governed by laws of that
+jurisdiction, without reference to its conflict-of-law provisions.
+Nothing in this Section shall prevent a party's ability to bring
+cross-claims or counter-claims.
+
+9. Miscellaneous
+----------------
+
+This License represents the complete agreement concerning the subject
+matter hereof. If any provision of this License is held to be
+unenforceable, such provision shall be reformed only to the extent
+necessary to make it enforceable. Any law or regulation which provides
+that the language of a contract shall be construed against the drafter
+shall not be used to construe this License against a Contributor.
+
+10. Versions of the License
+---------------------------
+
+10.1. New Versions
+
+Mozilla Foundation is the license steward. Except as provided in Section
+10.3, no one other than the license steward has the right to modify or
+publish new versions of this License. Each version will be given a
+distinguishing version number.
+
+10.2. Effect of New Versions
+
+You may distribute the Covered Software under the terms of the version
+of the License under which You originally received the Covered Software,
+or under the terms of any subsequent version published by the license
+steward.
+
+10.3. Modified Versions
+
+If you create software not governed by this License, and you want to
+create a new license for such software, you may create and use a
+modified version of this License if you rename the license and remove
+any references to the name of the license steward (except to note that
+such modified license differs from this License).
+
+10.4. Distributing Source Code Form that is Incompatible With Secondary
+Licenses
+
+If You choose to distribute Source Code Form that is Incompatible With
+Secondary Licenses under the terms of this version of the License, the
+notice described in Exhibit B of this License must be attached.
+
+Exhibit A - Source Code Form License Notice
+-------------------------------------------
+
+ This Source Code Form is subject to the terms of the Mozilla Public
+ License, v. 2.0. If a copy of the MPL was not distributed with this
+ file, You can obtain one at http://mozilla.org/MPL/2.0/.
+
+If it is not possible or desirable to put the notice in a particular
+file, then You may include the notice in a location (such as a LICENSE
+file in a relevant directory) where a recipient would be likely to look
+for such a notice.
+
+You may add additional accurate notices of copyright ownership.
+
+Exhibit B - "Incompatible With Secondary Licenses" Notice
+---------------------------------------------------------
+
+ This Source Code Form is "Incompatible With Secondary Licenses", as
+ defined by the Mozilla Public License, v. 2.0.
\ No newline at end of file
diff --git a/debian/rules b/debian/rules
new file mode 100755
index 0000000..3f03489
--- /dev/null
+++ b/debian/rules
@@ -0,0 +1,6 @@
+#!/usr/bin/make -f
+# -*- makefile -*-
+# debian/rules file for the Debian/GNU Linux r-cran-kernlab package
+# Copyright 2003-2014 by Dirk Eddelbuettel <edd at debian.org>
+
+include /usr/share/R/debian/r-cran.mk
diff --git a/debian/source/format b/debian/source/format
new file mode 100644
index 0000000..163aaf8
--- /dev/null
+++ b/debian/source/format
@@ -0,0 +1 @@
+3.0 (quilt)
diff --git a/debian/watch b/debian/watch
new file mode 100644
index 0000000..72be183
--- /dev/null
+++ b/debian/watch
@@ -0,0 +1,2 @@
+version=3
+http://cran.r-project.org/src/contrib/kernlab_([-\d\.]*)\.tar.gz
--
Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-science/packages/r-cran-kernlab.git
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