[suitesparse] 03/12: Merge tag 'upstream/4.5.2'
Sébastien Villemot
sebastien at debian.org
Wed May 4 13:30:40 UTC 2016
This is an automated email from the git hooks/post-receive script.
sebastien pushed a commit to branch master
in repository suitesparse.
commit d68a481ae42b50af48eeab1f79ded818dc980256
Merge: 3b88a84 857d9a7
Author: Sébastien Villemot <sebastien at debian.org>
Date: Sat Apr 23 10:04:34 2016 +0200
Merge tag 'upstream/4.5.2'
Upstream version 4.5.2
AMD/Demo/Makefile | 2 +-
AMD/Demo/amd_demo.out | 6 +-
AMD/Demo/amd_demo2.out | 4 +-
AMD/Demo/amd_f77wrapper.c | 8 -
AMD/Demo/amd_l_demo.out | 6 +-
AMD/Doc/AMD_UserGuide.pdf | Bin 169347 -> 168410 bytes
AMD/Doc/AMD_UserGuide.tex | 29 +-
AMD/Doc/ChangeLog | 6 +-
AMD/Doc/Makefile | 2 +-
AMD/Include/amd.h | 4 +-
AMD/Lib/Makefile | 2 +-
AMD/README.txt | 38 +-
BTF/Doc/ChangeLog | 4 +
BTF/Doc/License.txt | 20 +
BTF/Include/btf.h | 4 +-
BTF/Lib/Makefile | 2 +-
BTF/README.txt | 23 +-
CAMD/Demo/Makefile | 2 +-
CAMD/Demo/camd_demo.out | 6 +-
CAMD/Demo/camd_demo2.out | 4 +-
CAMD/Demo/camd_l_demo.out | 6 +-
CAMD/Doc/CAMD_UserGuide.pdf | Bin 162330 -> 160894 bytes
CAMD/Doc/CAMD_UserGuide.tex | 31 +-
CAMD/Doc/ChangeLog | 4 +
CAMD/Doc/{License => License.txt} | 0
CAMD/Doc/Makefile | 2 +-
CAMD/Doc/docdiff | 4 +-
CAMD/Include/camd.h | 4 +-
CAMD/Lib/Makefile | 2 +-
CAMD/MATLAB/camd_mex.c | 2 +-
CAMD/README.txt | 40 +-
CCOLAMD/Demo/ccolamd_example.c | 1 -
CCOLAMD/Demo/ccolamd_example.out | 4 +-
CCOLAMD/Demo/ccolamd_l_example.c | 1 -
CCOLAMD/Demo/ccolamd_l_example.out | 4 +-
CCOLAMD/Doc/ChangeLog | 4 +
CCOLAMD/Doc/License.txt | 21 +
CCOLAMD/Include/ccolamd.h | 5 +-
CCOLAMD/Lib/Makefile | 2 +-
CCOLAMD/MATLAB/ccolamdmex.c | 1 -
CCOLAMD/MATLAB/ccolamdtestmex.c | 1 -
CCOLAMD/MATLAB/csymamdmex.c | 1 -
CCOLAMD/MATLAB/csymamdtestmex.c | 1 -
CCOLAMD/README.txt | 19 +-
CCOLAMD/Source/ccolamd.c | 26 +-
CHOLMOD/Check/License.txt | 24 -
CHOLMOD/Check/cholmod_check.c | 3 -
CHOLMOD/Check/cholmod_read.c | 3 -
CHOLMOD/Cholesky/License.txt | 24 -
CHOLMOD/Cholesky/cholmod_amd.c | 3 -
CHOLMOD/Cholesky/cholmod_analyze.c | 3 -
CHOLMOD/Cholesky/cholmod_colamd.c | 3 -
CHOLMOD/Cholesky/cholmod_etree.c | 3 -
CHOLMOD/Cholesky/cholmod_factorize.c | 3 -
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CHOLMOD/Cholesky/cholmod_rcond.c | 3 -
CHOLMOD/Cholesky/cholmod_resymbol.c | 3 -
CHOLMOD/Cholesky/cholmod_rowcolcounts.c | 3 -
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CHOLMOD/Cholesky/cholmod_spsolve.c | 3 -
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CHOLMOD/Cholesky/t_cholmod_rowfac.c | 3 -
CHOLMOD/Cholesky/t_cholmod_solve.c | 3 -
CHOLMOD/Core/License.txt | 25 -
CHOLMOD/Core/cholmod_aat.c | 3 -
CHOLMOD/Core/cholmod_add.c | 3 -
CHOLMOD/Core/cholmod_band.c | 3 -
CHOLMOD/Core/cholmod_change_factor.c | 3 -
CHOLMOD/Core/cholmod_common.c | 3 -
CHOLMOD/Core/cholmod_complex.c | 3 -
CHOLMOD/Core/cholmod_copy.c | 3 -
CHOLMOD/Core/cholmod_dense.c | 3 -
CHOLMOD/Core/cholmod_error.c | 3 -
CHOLMOD/Core/cholmod_factor.c | 3 -
CHOLMOD/Core/cholmod_memory.c | 3 -
CHOLMOD/Core/cholmod_sparse.c | 3 -
CHOLMOD/Core/cholmod_transpose.c | 3 -
CHOLMOD/Core/cholmod_triplet.c | 3 -
CHOLMOD/Core/cholmod_version.c | 3 -
CHOLMOD/Core/t_cholmod_change_factor.c | 3 -
CHOLMOD/Core/t_cholmod_dense.c | 3 -
CHOLMOD/Core/t_cholmod_transpose.c | 3 -
CHOLMOD/Core/t_cholmod_triplet.c | 3 -
CHOLMOD/Demo/License.txt | 24 -
CHOLMOD/Demo/README.txt | 3 -
CHOLMOD/Demo/cholmod_demo.c | 3 -
CHOLMOD/Demo/cholmod_demo.h | 3 -
CHOLMOD/Demo/cholmod_l_demo.c | 3 -
CHOLMOD/Demo/cholmod_simple.c | 3 -
CHOLMOD/Doc/CHOLMOD_UserGuide.pdf | Bin 454973 -> 453611 bytes
CHOLMOD/Doc/CHOLMOD_UserGuide.tex | 57 +-
CHOLMOD/Doc/ChangeLog | 14 +-
CHOLMOD/Doc/License.txt | 346 +
CHOLMOD/GPU/cholmod_gpu.c | 3 -
CHOLMOD/GPU/cholmod_gpu_kernels.cu | 3 -
CHOLMOD/GPU/t_cholmod_gpu.c | 3 -
CHOLMOD/Include/License.txt | 8 -
CHOLMOD/Include/cholmod.h | 3 -
CHOLMOD/Include/cholmod_blas.h | 3 -
CHOLMOD/Include/cholmod_camd.h | 3 -
CHOLMOD/Include/cholmod_check.h | 3 -
CHOLMOD/Include/cholmod_cholesky.h | 3 -
CHOLMOD/Include/cholmod_config.h | 35 +-
CHOLMOD/Include/cholmod_core.h | 7 +-
CHOLMOD/Include/cholmod_gpu.h | 4 -
CHOLMOD/Include/cholmod_gpu_kernels.h | 4 -
CHOLMOD/Include/cholmod_internal.h | 3 -
CHOLMOD/Include/cholmod_io64.h | 3 -
CHOLMOD/Include/cholmod_matrixops.h | 3 -
CHOLMOD/Include/cholmod_modify.h | 3 -
CHOLMOD/Include/cholmod_partition.h | 3 -
CHOLMOD/Include/cholmod_supernodal.h | 3 -
CHOLMOD/Lib/Makefile | 2 +-
CHOLMOD/MATLAB/License.txt | 26 -
CHOLMOD/MATLAB/analyze.c | 3 -
CHOLMOD/MATLAB/bisect.c | 5 +-
CHOLMOD/MATLAB/chol2.c | 3 -
CHOLMOD/MATLAB/cholmod2.c | 3 -
CHOLMOD/MATLAB/etree2.c | 3 -
CHOLMOD/MATLAB/lchol.c | 3 -
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CHOLMOD/MATLAB/ldlrowmod.c | 3 -
CHOLMOD/MATLAB/ldlsolve.c | 3 -
CHOLMOD/MATLAB/ldlupdate.c | 3 -
CHOLMOD/MATLAB/lsubsolve.c | 3 -
CHOLMOD/MATLAB/lxbpattern.c | 3 -
CHOLMOD/MATLAB/metis.c | 5 +-
CHOLMOD/MATLAB/mread.c | 3 -
CHOLMOD/MATLAB/nesdis.c | 5 +-
CHOLMOD/MATLAB/resymbol.c | 3 -
CHOLMOD/MATLAB/sdmult.c | 3 -
CHOLMOD/MATLAB/septree.c | 5 +-
CHOLMOD/MATLAB/spsym.c | 3 -
CHOLMOD/MATLAB/symbfact2.c | 3 -
CHOLMOD/MatrixOps/License.txt | 25 -
CHOLMOD/MatrixOps/cholmod_drop.c | 3 -
CHOLMOD/MatrixOps/cholmod_horzcat.c | 3 -
CHOLMOD/MatrixOps/cholmod_norm.c | 3 -
CHOLMOD/MatrixOps/cholmod_scale.c | 3 -
CHOLMOD/MatrixOps/cholmod_sdmult.c | 3 -
CHOLMOD/MatrixOps/cholmod_ssmult.c | 3 -
CHOLMOD/MatrixOps/cholmod_submatrix.c | 3 -
CHOLMOD/MatrixOps/cholmod_symmetry.c | 3 -
CHOLMOD/MatrixOps/cholmod_vertcat.c | 3 -
CHOLMOD/MatrixOps/t_cholmod_sdmult.c | 3 -
CHOLMOD/Modify/License.txt | 25 -
CHOLMOD/Modify/cholmod_rowadd.c | 3 -
CHOLMOD/Modify/cholmod_rowdel.c | 3 -
CHOLMOD/Modify/cholmod_updown.c | 3 -
CHOLMOD/Modify/t_cholmod_updown.c | 3 -
CHOLMOD/Modify/t_cholmod_updown_numkr.c | 3 -
CHOLMOD/Partition/License.txt | 25 -
CHOLMOD/Partition/cholmod_camd.c | 3 -
CHOLMOD/Partition/cholmod_ccolamd.c | 3 -
CHOLMOD/Partition/cholmod_csymamd.c | 3 -
CHOLMOD/Partition/cholmod_metis.c | 3 -
CHOLMOD/Partition/cholmod_nesdis.c | 3 -
CHOLMOD/Supernodal/License.txt | 25 -
CHOLMOD/Supernodal/cholmod_super_numeric.c | 3 -
CHOLMOD/Supernodal/cholmod_super_solve.c | 3 -
CHOLMOD/Supernodal/cholmod_super_symbolic.c | 3 -
CHOLMOD/Supernodal/t_cholmod_super_numeric.c | 3 -
CHOLMOD/Supernodal/t_cholmod_super_solve.c | 3 -
CHOLMOD/Tcov/License.txt | 24 -
CHOLMOD/Tcov/amdtest.c | 3 -
CHOLMOD/Tcov/aug.c | 3 -
CHOLMOD/Tcov/camdtest.c | 3 -
CHOLMOD/Tcov/cctest.c | 3 -
CHOLMOD/Tcov/cm.c | 3 -
CHOLMOD/Tcov/cmread.c | 3 -
CHOLMOD/Tcov/ctest.c | 3 -
CHOLMOD/Tcov/huge.c | 3 -
CHOLMOD/Tcov/leak.c | 3 -
CHOLMOD/Tcov/lpdemo.c | 3 -
CHOLMOD/Tcov/memory.c | 3 -
CHOLMOD/Tcov/null.c | 3 -
CHOLMOD/Tcov/null2.c | 3 -
CHOLMOD/Tcov/raw_factor.c | 3 -
CHOLMOD/Tcov/solve.c | 3 -
CHOLMOD/Tcov/test_ops.c | 3 -
CHOLMOD/Tcov/unpack.c | 3 -
CHOLMOD/Valgrind/License.txt | 24 -
COLAMD/Demo/colamd_example.c | 2 -
COLAMD/Demo/colamd_example.out | 4 +-
COLAMD/Demo/colamd_l_example.c | 3 -
COLAMD/Demo/colamd_l_example.out | 4 +-
COLAMD/Doc/ChangeLog | 4 +
COLAMD/Doc/License.txt | 18 +
COLAMD/Include/colamd.h | 14 +-
COLAMD/Lib/Makefile | 2 +-
COLAMD/MATLAB/colamdtestmex.c | 2 +-
COLAMD/MATLAB/symamdmex.c | 2 +-
COLAMD/MATLAB/symamdtestmex.c | 2 +-
COLAMD/README.txt | 4 +-
COLAMD/Source/colamd.c | 25 +-
CSparse/Demo/cs_demo.out | 43 +-
CSparse/Doc/ChangeLog | 8 +
CSparse/Include/cs.h | 4 +-
CSparse/MATLAB/CSparse/cs_make.m | 4 +-
CSparse/MATLAB/UFget/Doc/License.txt | 26 +
CSparse/MATLAB/UFget/UFhelp.html | 28 +-
CSparse/MATLAB/UFget/mat/UF_Index.mat | Bin 117643 -> 144320 bytes
CSparse/MATLAB/UFget/matrices/UFstats.csv | 113 +-
CSparse/README.txt | 7 +-
CSparse/Source/cs_util.c | 1 +
CXSparse/Demo/cs_demo.out | 164 +-
CXSparse/Doc/ChangeLog | 8 +
CXSparse/Include/cs.h | 4 +-
CXSparse/Lib/Makefile | 2 +-
CXSparse/MATLAB/CSparse/cs_make.m | 4 +-
CXSparse/MATLAB/CSparse/private/cs_make_helper.m | 4 +-
CXSparse/MATLAB/UFget/Doc/License.txt | 26 +
CXSparse/MATLAB/UFget/UFhelp.html | 28 +-
CXSparse/MATLAB/UFget/mat/UF_Index.mat | Bin 117643 -> 144320 bytes
CXSparse/MATLAB/UFget/matrices/UFstats.csv | 113 +-
CXSparse/README.txt | 3 +-
CXSparse/Source/cs_util.c | 1 +
CXSparse_newfiles/Include/cs.h | 4 +-
CXSparse_newfiles/Lib/Makefile | 2 +-
CXSparse_newfiles/MATLAB/CSparse/cs_make.m | 4 +-
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CXSparse_newfiles/README.txt | 3 +-
ChangeLog | 14 +-
GPUQREngine/Doc/ChangeLog | 4 +
GPUQREngine/Doc/License.txt | 17 +
GPUQREngine/Include/GPUQREngine.hpp | 4 +-
GPUQREngine/Lib/Makefile | 2 +-
GPUQREngine/README.txt | 14 +-
KLU/Doc/ChangeLog | 4 +
KLU/Doc/KLU_UserGuide.pdf | Bin 214960 -> 213708 bytes
KLU/Doc/KLU_UserGuide.tex | 31 +-
KLU/Doc/License.txt | 20 +
KLU/Include/klu.h | 4 +-
KLU/Lib/Makefile | 2 +-
KLU/README.txt | 18 +-
LDL/Demo/ldlamd.out | 96 +-
LDL/Demo/ldllamd.out | 96 +-
LDL/Demo/ldllsimple.c | 2 +-
LDL/Demo/ldlmain.c | 2 +-
LDL/Demo/ldlsimple.c | 2 +-
LDL/Doc/ChangeLog | 7 +-
LDL/Doc/License.txt | 19 +
LDL/Doc/ldl_userguide.pdf | Bin 143266 -> 143267 bytes
LDL/Doc/ldl_userguide.tex | 2 +-
LDL/Include/ldl.h | 6 +-
LDL/Lib/Makefile | 2 +-
LDL/MATLAB/Contents.m | 4 +-
LDL/MATLAB/ldlmex.c | 2 +-
LDL/MATLAB/ldlsymbolmex.c | 2 +-
LDL/README.txt | 34 +-
LICENSE.txt | 955 ++
MATLAB_Tools/Doc/License.txt | 75 +
MATLAB_Tools/Factorize/Doc/license.txt | 27 -
MATLAB_Tools/LINFACTOR/Contents.m | 6 -
MATLAB_Tools/SFMULT/sfmult_atxtyt_k.s | 512 -
MATLAB_Tools/SSMULT/ChangeLog | 6 +-
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MATLAB_Tools/UFcollection/Doc/ChangeLog | 4 +
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MATLAB_Tools/UFcollection/Doc/gpl.txt | 340 -
MATLAB_Tools/UFcollection/README.txt | 4 +-
Mongoose/Demo/Demo.cpp | 38 +
Mongoose/Demo/Makefile | 33 +
Mongoose/Include/BoundaryHeap.hpp | 85 +
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Mongoose/Source/EdgeSeparator.cpp | 134 +
Mongoose/Source/FidduciaMattheyes.cpp | 347 +
Mongoose/Source/GuessCut.cpp | 322 +
Mongoose/Source/Interop.cpp | 365 +
Mongoose/Source/Matching.cpp | 386 +
Mongoose/Source/Nuri_qpGradProj.cpp | 142 +
Mongoose/Source/QPboundary.cpp | 523 +
Mongoose/Source/QPgradproj.cpp | 277 +
Mongoose/Source/QPlinks.cpp | 67 +
Mongoose/Source/QPmaxheap.cpp | 230 +
Mongoose/Source/QPminheap.cpp | 238 +
Mongoose/Source/QPnapdown.cpp | 208 +
Mongoose/Source/QPnapsack.cpp | 266 +
Mongoose/Source/QPnapsack2.cpp | 52 +
Mongoose/Source/QPnapup.cpp | 201 +
Mongoose/Source/Refinement.cpp | 115 +
Mongoose/Source/Waterdance.cpp | 17 +
Mongoose/Source/cs.cpp | 235 +
Mongoose/Tcov/Makefile | 145 +
Mongoose/Tcov/cov | 21 +
Mongoose/Tcov/test1.cpp | 164 +
PIRO_BAND/Demo/Makefile | 49 +
PIRO_BAND/Demo/README.txt | 43 +
PIRO_BAND/Demo/piro_band_testutils.c | 427 +
PIRO_BAND/Demo/test_piro_band.c | 143 +
PIRO_BAND/Demo/test_piro_band.h | 206 +
PIRO_BAND/Demo/test_piro_band_main.c | 113 +
PIRO_BAND/Demo/test_rand.c | 35 +
PIRO_BAND/Demo/test_rand.h | 26 +
PIRO_BAND/Doc/ChangeLog | 3 +
PIRO_BAND/Doc/License.txt | 25 +
PIRO_BAND/Doc/Makefile | 62 +
PIRO_BAND/Doc/UserGuide.pdf | Bin 0 -> 168563 bytes
PIRO_BAND/Doc/UserGuide.tex | 543 +
PIRO_BAND/Doc/footer.tex | 6 +
PIRO_BAND/Doc/getmproto | 4 +
PIRO_BAND/Doc/getproto | 6 +
PIRO_BAND/Doc/header.tex | 4 +
PIRO_BAND/Doc/lesser.txt | 504 +
PIRO_BAND/Doc/mfile.awk | 1 +
PIRO_BAND/Doc/mfooter.tex | 4 +
PIRO_BAND/Doc/mheader.tex | 5 +
PIRO_BAND/Doc/rule.awk | 1 +
PIRO_BAND/Include/piro_band.h | 589 +
PIRO_BAND/Include/piro_band_lapack.h | 352 +
PIRO_BAND/Lib/Makefile | 79 +
PIRO_BAND/MATLAB/Contents.m | 18 +
PIRO_BAND/MATLAB/Test/Contents.m | 16 +
PIRO_BAND/MATLAB/Test/README.txt | 1 +
PIRO_BAND/MATLAB/Test/piro_band_extract_qr.m | 62 +
PIRO_BAND/MATLAB/Test/piro_band_lapack.m | 28 +
PIRO_BAND/MATLAB/Test/piro_band_lapackmex.c | 194 +
PIRO_BAND/MATLAB/Test/piro_band_qr.m | 33 +
PIRO_BAND/MATLAB/Test/piro_band_qrmex.c | 412 +
PIRO_BAND/MATLAB/Test/piro_band_test_make.m | 58 +
PIRO_BAND/MATLAB/Test/test_band_matrix.m | 34 +
PIRO_BAND/MATLAB/Test/test_piro_band.m | 35 +
PIRO_BAND/MATLAB/Test/test_piro_band_error.m | 12 +
PIRO_BAND/MATLAB/Test/test_piro_band_special.m | 286 +
PIRO_BAND/MATLAB/Test/test_piro_band_svd.m | 329 +
PIRO_BAND/MATLAB/Test/testall.m | 31 +
PIRO_BAND/MATLAB/piro_band.m | 62 +
PIRO_BAND/MATLAB/piro_band_blas.h | 167 +
PIRO_BAND/MATLAB/piro_band_make.m | 93 +
PIRO_BAND/MATLAB/piro_band_make_opts.m | 73 +
PIRO_BAND/MATLAB/piro_band_matlab.h | 303 +
PIRO_BAND/MATLAB/piro_band_mexutil.c | 885 ++
PIRO_BAND/MATLAB/piro_band_qr.c | 305 +
PIRO_BAND/MATLAB/piro_band_qr_main.c | 30 +
PIRO_BAND/MATLAB/piro_band_svd.m | 271 +
PIRO_BAND/MATLAB/piro_band_svdkernel.m | 12 +
PIRO_BAND/MATLAB/piro_band_svdkernelmex.c | 524 +
PIRO_BAND/MATLAB/piro_bandmex.c | 224 +
PIRO_BAND/MATLAB/qr_unsqueeze.m | 43 +
PIRO_BAND/MATLAB/qr_unsqueezemex.c | 96 +
PIRO_BAND/Makefile | 54 +
PIRO_BAND/README.txt | 19 +
PIRO_BAND/Source/piro_band.c | 2530 +++++
PIRO_BAND/Source/piro_band_blocksize.c | 145 +
PIRO_BAND/Source/piro_band_blocksize.h | 36 +
PIRO_BAND/Source/piro_band_blocksize_main.c | 29 +
PIRO_BAND/Source/piro_band_givens.c | 339 +
PIRO_BAND/Source/piro_band_internal.h | 663 ++
PIRO_BAND/Source/piro_band_lapack.c | 977 ++
PIRO_BAND/Source/piro_band_lapack_internal.h | 408 +
PIRO_BAND/Source/piro_band_lapack_main.c | 60 +
PIRO_BAND/Source/piro_band_main.c | 74 +
PIRO_BAND/Source/piro_band_memory.h | 31 +
PIRO_BAND/Source/piro_band_util.h | 118 +
PIRO_BAND/Source/piro_band_uv_update.c | 136 +
PIRO_BAND/Source/piro_band_uv_update.h | 67 +
PIRO_BAND/Source/piro_band_uv_update_main.c | 30 +
PIRO_BAND/Tcov/Makefile | 118 +
PIRO_BAND/Tcov/cov.awk | 17 +
PIRO_BAND/Tcov/covall | 7 +
PIRO_BAND/Tcov/cover | 9 +
PIRO_BAND/Tcov/covs | 7 +
PIRO_BAND/Tcov/gcovs | 6 +
PIRO_BAND/Tcov/mem.h | 19 +
PIRO_BAND/Tcov/memory.c | 58 +
PIRO_BAND/Tcov/piro_band_cover.c | 874 ++
PIRO_BAND/Tcov/piro_band_cover.h | 93 +
PIRO_BAND/Tcov/piro_band_cover_main.c | 111 +
PIRO_SKY/Demo/Makefile | 7 +
PIRO_SKY/Doc/ChangeLog | 1 +
PIRO_SKY/Include/blksky.h | 134 +
PIRO_SKY/Include/genband_internal.h | 669 ++
PIRO_SKY/Include/genband_util.h | 184 +
PIRO_SKY/Lib/Makefile | 51 +
PIRO_SKY/MATLAB/2.txt | 1453 +++
PIRO_SKY/MATLAB/C.mat | Bin 0 -> 286 bytes
PIRO_SKY/MATLAB/Makefile | 54 +
PIRO_SKY/MATLAB/R.mat | Bin 0 -> 320 bytes
PIRO_SKY/MATLAB/S.mat | Bin 0 -> 1428999 bytes
PIRO_SKY/MATLAB/Test/Makefile | 31 +
PIRO_SKY/MATLAB/Test/R.mat | Bin 0 -> 320 bytes
PIRO_SKY/MATLAB/Test/Rmat | 631 ++
PIRO_SKY/MATLAB/Test/compare_symbolic.m | 97 +
PIRO_SKY/MATLAB/Test/demo_pirosky.m | 54 +
PIRO_SKY/MATLAB/Test/diary.first | 71 +
PIRO_SKY/MATLAB/Test/diary.first.2 | 216 +
PIRO_SKY/MATLAB/Test/diary.withband | 214 +
PIRO_SKY/MATLAB/Test/find_bw.m | 34 +
PIRO_SKY/MATLAB/Test/test_blksky.m | 144 +
PIRO_SKY/MATLAB/Test/test_blksky_perf.m | 106 +
PIRO_SKY/MATLAB/Test/test_blksky_symbolic.m | 87 +
PIRO_SKY/MATLAB/bb.m | 1 +
PIRO_SKY/MATLAB/blksky.m | 27 +
PIRO_SKY/MATLAB/blksky_make.m | 97 +
PIRO_SKY/MATLAB/blksky_mex.c | 184 +
PIRO_SKY/MATLAB/blksky_mex.log | 16 +
PIRO_SKY/MATLAB/blksky_symbolic.m | 20 +
PIRO_SKY/MATLAB/blksky_symbolic_mex.c | 89 +
PIRO_SKY/MATLAB/demo_pirosky_DIARY.txt | 11092 +++++++++++++++++++
PIRO_SKY/MATLAB/go.m | 7 +
PIRO_SKY/MATLAB/pirosky.m | 231 +
PIRO_SKY/MATLAB/t2.m | 24 +
PIRO_SKY/MATLAB/t3.m | 11 +
PIRO_SKY/MATLAB/t3.txt | 1131 ++
PIRO_SKY/MATLAB/tt.m | 1 +
PIRO_SKY/Makefile | 55 +
PIRO_SKY/README.txt | 24 +
PIRO_SKY/Results/profilecompare.eps | 9439 ++++++++++++++++
PIRO_SKY/Results/sky_perf_compare.m | 254 +
PIRO_SKY/Results/sky_perf_compare2.m | 201 +
PIRO_SKY/Results/sky_perf_compare_mp_aug23.diary | 1166 ++
PIRO_SKY/Results/sky_perf_compare_mp_aug23.mat | Bin 0 -> 16324 bytes
PIRO_SKY/Results/sky_perf_compare_mp_aug23_2.diary | 376 +
PIRO_SKY/Results/sky_perf_compare_mp_aug23_2.mat | Bin 0 -> 8560 bytes
PIRO_SKY/Results/sky_perf_compare_mp_empty.mat | Bin 0 -> 586 bytes
PIRO_SKY/Results/sky_perf_compare_mp_empty2.mat | Bin 0 -> 746 bytes
PIRO_SKY/Results/sky_perf_compare_mp_oct11.diary | 1340 +++
PIRO_SKY/Results/sky_perf_compare_mp_oct11.mat | Bin 0 -> 22578 bytes
PIRO_SKY/Source/blksky.c | 1961 ++++
PIRO_SKY/Source/blksky_symbolic.c | 813 ++
PIRO_SKY/Source/blksky_utils.c | 211 +
PIRO_SKY/Source/genband_givens.c | 384 +
PIRO_SKY/TODO.txt | 47 +
PIRO_SKY/Tcov/Makefile | 136 +
PIRO_SKY/Tcov/Matrices/R1.txt | 2 +
PIRO_SKY/Tcov/Matrices/R1b.txt | 2 +
PIRO_SKY/Tcov/Matrices/R3.txt | 3 +
PIRO_SKY/Tcov/Matrices/README.txt | 13 +
PIRO_SKY/Tcov/Matrices/Rmat | 631 ++
PIRO_SKY/Tcov/Matrices/Tina_DisCal_R.txt | 47 +
PIRO_SKY/Tcov/Matrices/Tina_DisCal_R2.txt | 51 +
PIRO_SKY/Tcov/cov.awk | 17 +
PIRO_SKY/Tcov/covall | 7 +
PIRO_SKY/Tcov/cover | 9 +
PIRO_SKY/Tcov/covs | 7 +
PIRO_SKY/Tcov/gcovs | 6 +
PIRO_SKY/Tcov/test_blksky.c | 183 +
PIRO_SKY/Tcov/typescript | 456 +
RBio/Doc/ChangeLog | 4 +
RBio/Include/RBio.h | 4 +-
RBio/Lib/Makefile | 2 +-
RBio/README.txt | 1 -
README.txt | 38 +-
SPQR/Doc/ChangeLog | 6 +-
SPQR/Doc/License.txt | 38 +
SPQR/Doc/README.txt | 7 +-
SPQR/Doc/spqr_user_guide.pdf | Bin 167256 -> 167258 bytes
SPQR/Doc/spqr_user_guide.tex | 5 +-
SPQR/Include/SuiteSparseQR_definitions.h | 4 +-
SPQR/Lib/Makefile | 2 +-
SPQR/README.txt | 13 +-
SuiteSparse_GPURuntime/Doc/ChangeLog | 5 +
SuiteSparse_GPURuntime/Doc/License.txt | 18 +
.../Include/SuiteSparseGPU_Runtime.hpp | 4 +-
SuiteSparse_GPURuntime/Lib/Makefile | 2 +-
SuiteSparse_GPURuntime/README.txt | 16 +-
SuiteSparse_config/Makefile | 2 +-
SuiteSparse_config/README.txt | 3 +
SuiteSparse_config/SuiteSparse_config.h | 36 +-
SuiteSparse_config/SuiteSparse_config.mk | 17 +-
UFget/Doc/License.txt | 26 +
UFget/UFhelp.html | 28 +-
UMFPACK/Demo/Makefile | 4 +-
UMFPACK/Demo/readhb.f | 4 +-
UMFPACK/Demo/readhb_nozeros.f | 4 +-
UMFPACK/Demo/readhb_size.f | 4 +-
UMFPACK/Demo/umf4.c | 4 +-
UMFPACK/Demo/umf4_f77wrapper.c | 18 +-
UMFPACK/Demo/umf4_f77zwrapper.c | 4 +-
UMFPACK/Demo/umf4hb.f | 4 +-
UMFPACK/Demo/umf4hb64.f | 4 +-
UMFPACK/Demo/umf4zhb.f | 4 +-
UMFPACK/Demo/umfpack_di_demo.c | 4 +-
UMFPACK/Demo/umfpack_di_demo.out | 82 +-
UMFPACK/Demo/umfpack_dl_demo.c | 4 +-
UMFPACK/Demo/umfpack_dl_demo.out | 86 +-
UMFPACK/Demo/umfpack_simple.c | 4 +-
UMFPACK/Demo/umfpack_xx_demo.c | 4 +-
UMFPACK/Demo/umfpack_zi_demo.c | 5 +-
UMFPACK/Demo/umfpack_zi_demo.out | 82 +-
UMFPACK/Demo/umfpack_zl_demo.c | 5 +-
UMFPACK/Demo/umfpack_zl_demo.out | 86 +-
UMFPACK/Doc/ChangeLog | 18 +-
UMFPACK/Doc/{License => License.txt} | 0
UMFPACK/Doc/Makefile | 4 +-
UMFPACK/Doc/UMFPACK_QuickStart.pdf | Bin 130372 -> 129927 bytes
UMFPACK/Doc/UMFPACK_QuickStart.tex | 2 +-
UMFPACK/Doc/UMFPACK_UserGuide.pdf | Bin 385061 -> 383651 bytes
UMFPACK/Doc/UMFPACK_UserGuide.stex | 37 +-
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UMFPACK/Include/umfpack_col_to_triplet.h | 2 +-
UMFPACK/Include/umfpack_defaults.h | 2 +-
UMFPACK/Include/umfpack_free_numeric.h | 2 +-
UMFPACK/Include/umfpack_free_symbolic.h | 2 +-
UMFPACK/Include/umfpack_get_determinant.h | 2 +-
UMFPACK/Include/umfpack_get_lunz.h | 2 +-
UMFPACK/Include/umfpack_get_numeric.h | 2 +-
UMFPACK/Include/umfpack_get_symbolic.h | 2 +-
UMFPACK/Include/umfpack_global.h | 2 +-
UMFPACK/Include/umfpack_load_numeric.h | 2 +-
UMFPACK/Include/umfpack_load_symbolic.h | 2 +-
UMFPACK/Include/umfpack_numeric.h | 2 +-
UMFPACK/Include/umfpack_qsymbolic.h | 2 +-
UMFPACK/Include/umfpack_report_control.h | 2 +-
UMFPACK/Include/umfpack_report_info.h | 2 +-
UMFPACK/Include/umfpack_report_matrix.h | 2 +-
UMFPACK/Include/umfpack_report_numeric.h | 2 +-
UMFPACK/Include/umfpack_report_perm.h | 2 +-
UMFPACK/Include/umfpack_report_status.h | 2 +-
UMFPACK/Include/umfpack_report_symbolic.h | 2 +-
UMFPACK/Include/umfpack_report_triplet.h | 2 +-
UMFPACK/Include/umfpack_report_vector.h | 2 +-
UMFPACK/Include/umfpack_save_numeric.h | 2 +-
UMFPACK/Include/umfpack_save_symbolic.h | 2 +-
UMFPACK/Include/umfpack_scale.h | 2 +-
UMFPACK/Include/umfpack_solve.h | 2 +-
UMFPACK/Include/umfpack_symbolic.h | 2 +-
UMFPACK/Include/umfpack_tictoc.h | 2 +-
UMFPACK/Include/umfpack_timer.h | 2 +-
UMFPACK/Include/umfpack_transpose.h | 2 +-
UMFPACK/Include/umfpack_triplet_to_col.h | 2 +-
UMFPACK/Include/umfpack_wsolve.h | 2 +-
UMFPACK/Lib/Makefile | 4 +-
UMFPACK/MATLAB/Contents.m | 2 +-
UMFPACK/MATLAB/luflopmex.c | 2 +-
UMFPACK/MATLAB/umfpack2.mexmaci64 | Bin 945552 -> 0 bytes
UMFPACK/MATLAB/umfpack_details.m | 30 +-
UMFPACK/MATLAB/umfpack_simple.m | 9 +-
UMFPACK/MATLAB/umfpack_simple.m.out | 9 +-
UMFPACK/MATLAB/umfpackmex.c | 2 +-
UMFPACK/README.txt | 47 +-
UMFPACK/Source/umf_analyze.c | 2 +-
UMFPACK/Source/umf_analyze.h | 2 +-
UMFPACK/Source/umf_apply_order.c | 2 +-
UMFPACK/Source/umf_apply_order.h | 2 +-
UMFPACK/Source/umf_assemble.c | 2 +-
UMFPACK/Source/umf_assemble.h | 2 +-
UMFPACK/Source/umf_blas3_update.c | 2 +-
UMFPACK/Source/umf_blas3_update.h | 2 +-
UMFPACK/Source/umf_build_tuples.c | 2 +-
UMFPACK/Source/umf_build_tuples.h | 2 +-
UMFPACK/Source/umf_colamd.c | 2 +-
UMFPACK/Source/umf_colamd.h | 2 +-
UMFPACK/Source/umf_config.h | 2 +-
UMFPACK/Source/umf_create_element.c | 2 +-
UMFPACK/Source/umf_create_element.h | 2 +-
UMFPACK/Source/umf_dump.c | 2 +-
UMFPACK/Source/umf_dump.h | 2 +-
UMFPACK/Source/umf_extend_front.c | 2 +-
UMFPACK/Source/umf_extend_front.h | 2 +-
UMFPACK/Source/umf_free.c | 2 +-
UMFPACK/Source/umf_free.h | 2 +-
UMFPACK/Source/umf_fsize.c | 2 +-
UMFPACK/Source/umf_fsize.h | 2 +-
UMFPACK/Source/umf_garbage_collection.c | 2 +-
UMFPACK/Source/umf_garbage_collection.h | 2 +-
UMFPACK/Source/umf_get_memory.c | 2 +-
UMFPACK/Source/umf_get_memory.h | 2 +-
UMFPACK/Source/umf_grow_front.c | 2 +-
UMFPACK/Source/umf_grow_front.h | 2 +-
UMFPACK/Source/umf_init_front.c | 2 +-
UMFPACK/Source/umf_init_front.h | 2 +-
UMFPACK/Source/umf_internal.h | 2 +-
UMFPACK/Source/umf_is_permutation.c | 2 +-
UMFPACK/Source/umf_is_permutation.h | 2 +-
UMFPACK/Source/umf_kernel.c | 2 +-
UMFPACK/Source/umf_kernel.h | 2 +-
UMFPACK/Source/umf_kernel_init.c | 2 +-
UMFPACK/Source/umf_kernel_init.h | 2 +-
UMFPACK/Source/umf_kernel_wrapup.c | 2 +-
UMFPACK/Source/umf_kernel_wrapup.h | 2 +-
UMFPACK/Source/umf_local_search.c | 2 +-
UMFPACK/Source/umf_local_search.h | 2 +-
UMFPACK/Source/umf_lsolve.c | 2 +-
UMFPACK/Source/umf_lsolve.h | 2 +-
UMFPACK/Source/umf_ltsolve.c | 2 +-
UMFPACK/Source/umf_ltsolve.h | 2 +-
UMFPACK/Source/umf_malloc.c | 2 +-
UMFPACK/Source/umf_malloc.h | 2 +-
UMFPACK/Source/umf_mem_alloc_element.c | 2 +-
UMFPACK/Source/umf_mem_alloc_element.h | 2 +-
UMFPACK/Source/umf_mem_alloc_head_block.c | 2 +-
UMFPACK/Source/umf_mem_alloc_head_block.h | 2 +-
UMFPACK/Source/umf_mem_alloc_tail_block.c | 2 +-
UMFPACK/Source/umf_mem_alloc_tail_block.h | 2 +-
UMFPACK/Source/umf_mem_free_tail_block.c | 2 +-
UMFPACK/Source/umf_mem_free_tail_block.h | 2 +-
UMFPACK/Source/umf_mem_init_memoryspace.c | 2 +-
UMFPACK/Source/umf_mem_init_memoryspace.h | 2 +-
UMFPACK/Source/umf_multicompile.c | 2 +-
UMFPACK/Source/umf_realloc.c | 2 +-
UMFPACK/Source/umf_realloc.h | 2 +-
UMFPACK/Source/umf_report_perm.c | 2 +-
UMFPACK/Source/umf_report_perm.h | 2 +-
UMFPACK/Source/umf_report_vector.c | 2 +-
UMFPACK/Source/umf_report_vector.h | 2 +-
UMFPACK/Source/umf_row_search.c | 2 +-
UMFPACK/Source/umf_row_search.h | 2 +-
UMFPACK/Source/umf_scale.c | 2 +-
UMFPACK/Source/umf_scale.h | 2 +-
UMFPACK/Source/umf_scale_column.c | 2 +-
UMFPACK/Source/umf_scale_column.h | 2 +-
UMFPACK/Source/umf_set_stats.c | 2 +-
UMFPACK/Source/umf_set_stats.h | 2 +-
UMFPACK/Source/umf_singletons.c | 2 +-
UMFPACK/Source/umf_singletons.h | 2 +-
UMFPACK/Source/umf_solve.c | 2 +-
UMFPACK/Source/umf_solve.h | 2 +-
UMFPACK/Source/umf_start_front.c | 2 +-
UMFPACK/Source/umf_start_front.h | 2 +-
UMFPACK/Source/umf_store_lu.c | 2 +-
UMFPACK/Source/umf_store_lu.h | 2 +-
UMFPACK/Source/umf_symbolic_usage.c | 2 +-
UMFPACK/Source/umf_symbolic_usage.h | 2 +-
UMFPACK/Source/umf_transpose.c | 2 +-
UMFPACK/Source/umf_transpose.h | 2 +-
UMFPACK/Source/umf_triplet.c | 2 +-
UMFPACK/Source/umf_triplet.h | 2 +-
UMFPACK/Source/umf_tuple_lengths.c | 2 +-
UMFPACK/Source/umf_tuple_lengths.h | 2 +-
UMFPACK/Source/umf_usolve.c | 2 +-
UMFPACK/Source/umf_usolve.h | 2 +-
UMFPACK/Source/umf_utsolve.c | 2 +-
UMFPACK/Source/umf_utsolve.h | 2 +-
UMFPACK/Source/umf_valid_numeric.c | 2 +-
UMFPACK/Source/umf_valid_numeric.h | 2 +-
UMFPACK/Source/umf_valid_symbolic.c | 2 +-
UMFPACK/Source/umf_valid_symbolic.h | 2 +-
UMFPACK/Source/umf_version.h | 2 +-
UMFPACK/Source/umfpack_col_to_triplet.c | 2 +-
UMFPACK/Source/umfpack_defaults.c | 2 +-
UMFPACK/Source/umfpack_free_numeric.c | 2 +-
UMFPACK/Source/umfpack_free_symbolic.c | 2 +-
UMFPACK/Source/umfpack_get_determinant.c | 2 +-
UMFPACK/Source/umfpack_get_lunz.c | 2 +-
UMFPACK/Source/umfpack_get_numeric.c | 2 +-
UMFPACK/Source/umfpack_get_symbolic.c | 2 +-
UMFPACK/Source/umfpack_global.c | 2 +-
UMFPACK/Source/umfpack_load_numeric.c | 2 +-
UMFPACK/Source/umfpack_load_symbolic.c | 2 +-
UMFPACK/Source/umfpack_numeric.c | 2 +-
UMFPACK/Source/umfpack_qsymbolic.c | 2 +-
UMFPACK/Source/umfpack_report_control.c | 2 +-
UMFPACK/Source/umfpack_report_info.c | 2 +-
UMFPACK/Source/umfpack_report_matrix.c | 2 +-
UMFPACK/Source/umfpack_report_numeric.c | 2 +-
UMFPACK/Source/umfpack_report_perm.c | 2 +-
UMFPACK/Source/umfpack_report_status.c | 2 +-
UMFPACK/Source/umfpack_report_symbolic.c | 2 +-
UMFPACK/Source/umfpack_report_triplet.c | 2 +-
UMFPACK/Source/umfpack_report_vector.c | 2 +-
UMFPACK/Source/umfpack_save_numeric.c | 2 +-
UMFPACK/Source/umfpack_save_symbolic.c | 2 +-
UMFPACK/Source/umfpack_scale.c | 2 +-
UMFPACK/Source/umfpack_solve.c | 2 +-
UMFPACK/Source/umfpack_symbolic.c | 2 +-
UMFPACK/Source/umfpack_tictoc.c | 2 +-
UMFPACK/Source/umfpack_timer.c | 2 +-
UMFPACK/Source/umfpack_transpose.c | 2 +-
UMFPACK/Source/umfpack_triplet_to_col.c | 2 +-
UMFPACK/Tcov/ut.c | 2 +-
share/.gitignore | 2 +-
828 files changed, 76516 insertions(+), 3381 deletions(-)
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