[suitesparse] 08/12: Merge tag 'upstream/4.5.3_beta'
Sébastien Villemot
sebastien at debian.org
Wed May 4 13:30:40 UTC 2016
This is an automated email from the git hooks/post-receive script.
sebastien pushed a commit to branch master
in repository suitesparse.
commit 1ce989828b3c0979fb8a40c5474425d7e17e3630
Merge: 56c51d2 2435de0
Author: Sébastien Villemot <sebastien at debian.org>
Date: Wed May 4 14:36:26 2016 +0200
Merge tag 'upstream/4.5.3_beta'
Upstream version 4.5.3~beta
AMD/Lib/Makefile | 2 +
AMD/Makefile | 4 +
BTF/Lib/Makefile | 2 +
BTF/Makefile | 4 +
CAMD/Lib/Makefile | 2 +
CAMD/Makefile | 4 +
CCOLAMD/Lib/Makefile | 2 +
CCOLAMD/Makefile | 4 +
CHOLMOD/Lib/Makefile | 2 +
CHOLMOD/Makefile | 4 +
COLAMD/Lib/Makefile | 2 +
COLAMD/Makefile | 4 +
CSparse/Lib/Makefile | 2 +
CSparse/Makefile | 4 +
CXSparse/Lib/Makefile | 2 +
CXSparse/Makefile | 4 +
CXSparse_newfiles/Lib/Makefile | 2 +
CXSparse_newfiles/Makefile | 4 +
GPUQREngine/Lib/Makefile | 4 +-
GPUQREngine/Makefile | 4 +
KLU/Lib/Makefile | 2 +
KLU/Makefile | 4 +
LDL/Lib/Makefile | 2 +
LDL/Makefile | 4 +
Makefile | 24 +
Mongoose/Demo/Demo.cpp | 38 -
Mongoose/Demo/Makefile | 33 -
Mongoose/Include/BoundaryHeap.hpp | 85 -
Mongoose/Include/Coarsening.hpp | 14 -
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Mongoose/Include/CutCost.hpp | 18 -
Mongoose/Include/Debug.hpp | 38 -
Mongoose/Include/FidduciaMattheyes.hpp | 60 -
Mongoose/Include/GradProj.hpp | 54 -
Mongoose/Include/Graph.hpp | 300 -
Mongoose/Include/GuessCut.hpp | 35 -
Mongoose/Include/Hager.hpp | 26 -
Mongoose/Include/Interop.hpp | 46 -
Mongoose/Include/Matching.hpp | 70 -
Mongoose/Include/Mongoose.hpp | 39 -
Mongoose/Include/Mongoose_internal.hpp | 22 -
Mongoose/Include/Napsack.hpp | 143 -
Mongoose/Include/Options.hpp | 95 -
Mongoose/Include/QPDelta.hpp | 77 -
Mongoose/Include/Refining.hpp | 13 -
Mongoose/Include/Waterdance.hpp | 15 -
Mongoose/Include/cs.hpp | 58 -
Mongoose/Lib/Makefile | 118 -
Mongoose/MATLAB/Script/buildResults.m | 51 -
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Mongoose/MATLAB/Script/exportToMM.m | 24 -
Mongoose/MATLAB/Script/fight.m | 157 -
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Mongoose/MATLAB/Script/gp_generateOptions.m | 85 -
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Mongoose/MATLAB/Script/gp_getConfig.m | 95 -
Mongoose/MATLAB/Script/gp_getFailVector.m | 74 -
Mongoose/MATLAB/Script/gp_getFilter.m | 131 -
Mongoose/MATLAB/Script/gp_getLargestComponent.m | 29 -
Mongoose/MATLAB/Script/gp_interpretPart.m | 37 -
Mongoose/MATLAB/Script/gp_log.m | 15 -
Mongoose/MATLAB/Script/gp_printDetails.m | 12 -
Mongoose/MATLAB/Script/gp_printExecDetails.m | 47 -
Mongoose/MATLAB/Script/gp_profile.m | 47 -
Mongoose/MATLAB/Script/gp_runExperiment.m | 48 -
Mongoose/MATLAB/Script/gp_runSingle.m | 48 -
Mongoose/MATLAB/Script/gp_scan.m | 12 -
Mongoose/MATLAB/Script/gp_showCut.m | 23 -
Mongoose/MATLAB/Script/make_csparse.m | 2 -
Mongoose/MATLAB/Script/make_metismex.m | 6 -
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Mongoose/MATLAB/Script/make_mongoose.m | 2 -
Mongoose/MATLAB/Script/meshpart/Contents.m | 76 -
.../MATLAB/Script/meshpart/README.CHANGES.text | 64 -
Mongoose/MATLAB/Script/meshpart/analyze.m | 48 -
Mongoose/MATLAB/Script/meshpart/badmesh.m | 37 -
Mongoose/MATLAB/Script/meshpart/blockdiags.m | 89 -
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Mongoose/MATLAB/Script/meshpart/centerpoint.m | 45 -
Mongoose/MATLAB/Script/meshpart/chaco.m | 237 -
Mongoose/MATLAB/Script/meshpart/chaco/Makefile | 267 -
Mongoose/MATLAB/Script/meshpart/chaco/README | 86 -
.../MATLAB/Script/meshpart/chaco/User_Params.debug | 27 -
.../Script/meshpart/chaco/User_Params.verbose | 8 -
Mongoose/MATLAB/Script/meshpart/chaco/bail.c | 28 -
.../Script/meshpart/chaco/chaco_check_graph.c | 149 -
.../MATLAB/Script/meshpart/chaco/check_input.c | 500 -
Mongoose/MATLAB/Script/meshpart/chaco/mlchaco.c | 197 -
Mongoose/MATLAB/Script/meshpart/chaco/smalloc.c | 357 -
.../MATLAB/Script/meshpart/chaco/user_params.c | 142 -
Mongoose/MATLAB/Script/meshpart/circle.m | 38 -
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Mongoose/MATLAB/Script/meshpart/colndperm.m | 121 -
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Mongoose/MATLAB/Script/meshpart/conmap.m | 50 -
Mongoose/MATLAB/Script/meshpart/conmapinv.m | 30 -
Mongoose/MATLAB/Script/meshpart/contract.m | 53 -
Mongoose/MATLAB/Script/meshpart/coordpart.m | 39 -
Mongoose/MATLAB/Script/meshpart/copyright.m | 27 -
Mongoose/MATLAB/Script/meshpart/cutsize.m | 29 -
Mongoose/MATLAB/Script/meshpart/dice.m | 93 -
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Mongoose/MATLAB/Script/meshpart/geopart.m | 171 -
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Mongoose/MATLAB/Script/meshpart/gp_logfile.txt | 8634 ---------------
Mongoose/MATLAB/Script/meshpart/gplotg.m | 61 -
Mongoose/MATLAB/Script/meshpart/gplotmap.m | 86 -
Mongoose/MATLAB/Script/meshpart/gplotpart.m | 79 -
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Mongoose/MATLAB/Script/meshpart/highlight.m | 63 -
Mongoose/MATLAB/Script/meshpart/inertpart.m | 36 -
Mongoose/MATLAB/Script/meshpart/intersection.m | 28 -
Mongoose/MATLAB/Script/meshpart/laplacian.m | 23 -
Mongoose/MATLAB/Script/meshpart/meshdemo.m | 439 -
Mongoose/MATLAB/Script/meshpart/meshes.mat | Bin 176371 -> 0 bytes
Mongoose/MATLAB/Script/meshpart/meshpart.htm | 156 -
Mongoose/MATLAB/Script/meshpart/metisdice.m | 38 -
Mongoose/MATLAB/Script/meshpart/metismex.c | 359 -
Mongoose/MATLAB/Script/meshpart/metismex.m | 25 -
Mongoose/MATLAB/Script/meshpart/metismex4.c | 359 -
Mongoose/MATLAB/Script/meshpart/metismex4.m | 25 -
Mongoose/MATLAB/Script/meshpart/metisnd.m | 32 -
Mongoose/MATLAB/Script/meshpart/metispart.m | 31 -
Mongoose/MATLAB/Script/meshpart/metispart4.m | 31 -
Mongoose/MATLAB/Script/meshpart/mlchaco.m | 22 -
Mongoose/MATLAB/Script/meshpart/mscircle.m | 73 -
Mongoose/MATLAB/Script/meshpart/ndperm.m | 113 -
Mongoose/MATLAB/Script/meshpart/other.m | 31 -
Mongoose/MATLAB/Script/meshpart/partition.m | 44 -
Mongoose/MATLAB/Script/meshpart/radong.m | 33 -
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Mongoose/MATLAB/Script/meshpart/resetrandoms.m | 10 -
Mongoose/MATLAB/Script/meshpart/sepcircle.m | 48 -
Mongoose/MATLAB/Script/meshpart/sepline.m | 54 -
Mongoose/MATLAB/Script/meshpart/sepquality.m | 19 -
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Mongoose/MATLAB/Script/meshpart/specdice.m | 39 -
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Mongoose/MATLAB/Script/meshpart/tree3xpath.m | 79 -
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Mongoose/MATLAB/Script/meshpart/union.m | 25 -
Mongoose/MATLAB/Script/meshpart/vtxsep.m | 70 -
Mongoose/MATLAB/Script/methods/run_gp.m | 41 -
Mongoose/MATLAB/Script/methods/run_metis4.m | 47 -
Mongoose/MATLAB/Script/methods/run_metis5.m | 47 -
Mongoose/MATLAB/Script/metis_showCut.m | 20 -
Mongoose/MATLAB/gp_computeEdgeSeparator.cpp | 56 -
Mongoose/MATLAB/gp_exportGraph.cpp | 44 -
Mongoose/MATLAB/gp_getDefaultOptions.cpp | 25 -
Mongoose/MATLAB/gp_mex.hpp | 52 -
Mongoose/MATLAB/mex_get_graph.cpp | 36 -
Mongoose/MATLAB/mex_get_options.cpp | 38 -
Mongoose/MATLAB/mex_getput_vector.cpp | 67 -
Mongoose/MATLAB/mex_put_options.cpp | 32 -
Mongoose/MATLAB/mex_struct_util.cpp | 87 -
Mongoose/MATLAB/mongoose_make.m | 120 -
Mongoose/Makefile | 51 -
Mongoose/Source/BoundaryHeap.cpp | 272 -
Mongoose/Source/Coarsening.cpp | 135 -
Mongoose/Source/Conditioning.cpp | 64 -
Mongoose/Source/EdgeSeparator.cpp | 134 -
Mongoose/Source/FidduciaMattheyes.cpp | 347 -
Mongoose/Source/GuessCut.cpp | 322 -
Mongoose/Source/Interop.cpp | 365 -
Mongoose/Source/Matching.cpp | 386 -
Mongoose/Source/Nuri_qpGradProj.cpp | 142 -
Mongoose/Source/QPboundary.cpp | 523 -
Mongoose/Source/QPgradproj.cpp | 277 -
Mongoose/Source/QPlinks.cpp | 67 -
Mongoose/Source/QPmaxheap.cpp | 230 -
Mongoose/Source/QPminheap.cpp | 238 -
Mongoose/Source/QPnapdown.cpp | 208 -
Mongoose/Source/QPnapsack.cpp | 266 -
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Mongoose/Source/QPnapup.cpp | 201 -
Mongoose/Source/Refinement.cpp | 115 -
Mongoose/Source/Waterdance.cpp | 17 -
Mongoose/Source/cs.cpp | 235 -
Mongoose/Tcov/Makefile | 145 -
Mongoose/Tcov/cov | 21 -
Mongoose/Tcov/test1.cpp | 164 -
PIRO_BAND/Demo/Makefile | 49 -
PIRO_BAND/Demo/README.txt | 43 -
PIRO_BAND/Demo/piro_band_testutils.c | 427 -
PIRO_BAND/Demo/test_piro_band.c | 143 -
PIRO_BAND/Demo/test_piro_band.h | 206 -
PIRO_BAND/Demo/test_piro_band_main.c | 113 -
PIRO_BAND/Demo/test_rand.c | 35 -
PIRO_BAND/Demo/test_rand.h | 26 -
PIRO_BAND/Doc/ChangeLog | 3 -
PIRO_BAND/Doc/License.txt | 25 -
PIRO_BAND/Doc/Makefile | 62 -
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PIRO_BAND/Doc/UserGuide.tex | 543 -
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PIRO_BAND/Doc/header.tex | 4 -
PIRO_BAND/Doc/lesser.txt | 504 -
PIRO_BAND/Doc/mfile.awk | 1 -
PIRO_BAND/Doc/mfooter.tex | 4 -
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PIRO_BAND/Doc/rule.awk | 1 -
PIRO_BAND/Include/piro_band.h | 589 -
PIRO_BAND/Include/piro_band_lapack.h | 352 -
PIRO_BAND/Lib/Makefile | 79 -
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PIRO_BAND/MATLAB/Test/Contents.m | 16 -
PIRO_BAND/MATLAB/Test/README.txt | 1 -
PIRO_BAND/MATLAB/Test/piro_band_extract_qr.m | 62 -
PIRO_BAND/MATLAB/Test/piro_band_lapack.m | 28 -
PIRO_BAND/MATLAB/Test/piro_band_lapackmex.c | 194 -
PIRO_BAND/MATLAB/Test/piro_band_qr.m | 33 -
PIRO_BAND/MATLAB/Test/piro_band_qrmex.c | 412 -
PIRO_BAND/MATLAB/Test/piro_band_test_make.m | 58 -
PIRO_BAND/MATLAB/Test/test_band_matrix.m | 34 -
PIRO_BAND/MATLAB/Test/test_piro_band.m | 35 -
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PIRO_BAND/MATLAB/Test/test_piro_band_special.m | 286 -
PIRO_BAND/MATLAB/Test/test_piro_band_svd.m | 329 -
PIRO_BAND/MATLAB/Test/testall.m | 31 -
PIRO_BAND/MATLAB/piro_band.m | 62 -
PIRO_BAND/MATLAB/piro_band_blas.h | 167 -
PIRO_BAND/MATLAB/piro_band_make.m | 93 -
PIRO_BAND/MATLAB/piro_band_make_opts.m | 73 -
PIRO_BAND/MATLAB/piro_band_matlab.h | 303 -
PIRO_BAND/MATLAB/piro_band_mexutil.c | 885 --
PIRO_BAND/MATLAB/piro_band_qr.c | 305 -
PIRO_BAND/MATLAB/piro_band_qr_main.c | 30 -
PIRO_BAND/MATLAB/piro_band_svd.m | 271 -
PIRO_BAND/MATLAB/piro_band_svdkernel.m | 12 -
PIRO_BAND/MATLAB/piro_band_svdkernelmex.c | 524 -
PIRO_BAND/MATLAB/piro_bandmex.c | 224 -
PIRO_BAND/MATLAB/qr_unsqueeze.m | 43 -
PIRO_BAND/MATLAB/qr_unsqueezemex.c | 96 -
PIRO_BAND/Makefile | 54 -
PIRO_BAND/README.txt | 19 -
PIRO_BAND/Source/piro_band.c | 2530 -----
PIRO_BAND/Source/piro_band_blocksize.c | 145 -
PIRO_BAND/Source/piro_band_blocksize.h | 36 -
PIRO_BAND/Source/piro_band_blocksize_main.c | 29 -
PIRO_BAND/Source/piro_band_givens.c | 339 -
PIRO_BAND/Source/piro_band_internal.h | 663 --
PIRO_BAND/Source/piro_band_lapack.c | 977 --
PIRO_BAND/Source/piro_band_lapack_internal.h | 408 -
PIRO_BAND/Source/piro_band_lapack_main.c | 60 -
PIRO_BAND/Source/piro_band_main.c | 74 -
PIRO_BAND/Source/piro_band_memory.h | 31 -
PIRO_BAND/Source/piro_band_util.h | 118 -
PIRO_BAND/Source/piro_band_uv_update.c | 136 -
PIRO_BAND/Source/piro_band_uv_update.h | 67 -
PIRO_BAND/Source/piro_band_uv_update_main.c | 30 -
PIRO_BAND/Tcov/Makefile | 118 -
PIRO_BAND/Tcov/cov.awk | 17 -
PIRO_BAND/Tcov/covall | 7 -
PIRO_BAND/Tcov/cover | 9 -
PIRO_BAND/Tcov/covs | 7 -
PIRO_BAND/Tcov/gcovs | 6 -
PIRO_BAND/Tcov/mem.h | 19 -
PIRO_BAND/Tcov/memory.c | 58 -
PIRO_BAND/Tcov/piro_band_cover.c | 874 --
PIRO_BAND/Tcov/piro_band_cover.h | 93 -
PIRO_BAND/Tcov/piro_band_cover_main.c | 111 -
PIRO_SKY/Demo/Makefile | 7 -
PIRO_SKY/Doc/ChangeLog | 1 -
PIRO_SKY/Include/blksky.h | 134 -
PIRO_SKY/Include/genband_internal.h | 669 --
PIRO_SKY/Include/genband_util.h | 184 -
PIRO_SKY/Lib/Makefile | 51 -
PIRO_SKY/MATLAB/2.txt | 1453 ---
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PIRO_SKY/MATLAB/Makefile | 54 -
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PIRO_SKY/MATLAB/Test/Rmat | 631 --
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PIRO_SKY/MATLAB/Test/demo_pirosky.m | 54 -
PIRO_SKY/MATLAB/Test/diary.first | 71 -
PIRO_SKY/MATLAB/Test/diary.first.2 | 216 -
PIRO_SKY/MATLAB/Test/diary.withband | 214 -
PIRO_SKY/MATLAB/Test/find_bw.m | 34 -
PIRO_SKY/MATLAB/Test/test_blksky.m | 144 -
PIRO_SKY/MATLAB/Test/test_blksky_perf.m | 106 -
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PIRO_SKY/MATLAB/bb.m | 1 -
PIRO_SKY/MATLAB/blksky.m | 27 -
PIRO_SKY/MATLAB/blksky_make.m | 97 -
PIRO_SKY/MATLAB/blksky_mex.c | 184 -
PIRO_SKY/MATLAB/blksky_mex.log | 16 -
PIRO_SKY/MATLAB/blksky_symbolic.m | 20 -
PIRO_SKY/MATLAB/blksky_symbolic_mex.c | 89 -
PIRO_SKY/MATLAB/demo_pirosky_DIARY.txt | 11092 -------------------
PIRO_SKY/MATLAB/go.m | 7 -
PIRO_SKY/MATLAB/pirosky.m | 231 -
PIRO_SKY/MATLAB/t2.m | 24 -
PIRO_SKY/MATLAB/t3.m | 11 -
PIRO_SKY/MATLAB/t3.txt | 1131 --
PIRO_SKY/MATLAB/tt.m | 1 -
PIRO_SKY/Makefile | 55 -
PIRO_SKY/README.txt | 24 -
PIRO_SKY/Results/profilecompare.eps | 9439 ----------------
PIRO_SKY/Results/sky_perf_compare.m | 254 -
PIRO_SKY/Results/sky_perf_compare2.m | 201 -
PIRO_SKY/Results/sky_perf_compare_mp_aug23.diary | 1166 --
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PIRO_SKY/Results/sky_perf_compare_mp_aug23_2.diary | 376 -
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PIRO_SKY/Results/sky_perf_compare_mp_oct11.diary | 1340 ---
PIRO_SKY/Results/sky_perf_compare_mp_oct11.mat | Bin 22578 -> 0 bytes
PIRO_SKY/Source/blksky.c | 1961 ----
PIRO_SKY/Source/blksky_symbolic.c | 813 --
PIRO_SKY/Source/blksky_utils.c | 211 -
PIRO_SKY/Source/genband_givens.c | 384 -
PIRO_SKY/TODO.txt | 47 -
PIRO_SKY/Tcov/Makefile | 136 -
PIRO_SKY/Tcov/Matrices/R1.txt | 2 -
PIRO_SKY/Tcov/Matrices/R1b.txt | 2 -
PIRO_SKY/Tcov/Matrices/R3.txt | 3 -
PIRO_SKY/Tcov/Matrices/README.txt | 13 -
PIRO_SKY/Tcov/Matrices/Rmat | 631 --
PIRO_SKY/Tcov/Matrices/Tina_DisCal_R.txt | 47 -
PIRO_SKY/Tcov/Matrices/Tina_DisCal_R2.txt | 51 -
PIRO_SKY/Tcov/cov.awk | 17 -
PIRO_SKY/Tcov/covall | 7 -
PIRO_SKY/Tcov/cover | 9 -
PIRO_SKY/Tcov/covs | 7 -
PIRO_SKY/Tcov/gcovs | 6 -
PIRO_SKY/Tcov/test_blksky.c | 183 -
PIRO_SKY/Tcov/typescript | 456 -
RBio/Lib/Makefile | 2 +
RBio/Makefile | 4 +
SPQR/Lib/Makefile | 4 +-
SPQR/Makefile | 4 +
SuiteSparse_GPURuntime/Lib/Makefile | 4 +-
SuiteSparse_GPURuntime/Makefile | 4 +
SuiteSparse_config/Makefile | 2 +
SuiteSparse_config/SuiteSparse_config.mk | 3 +-
UMFPACK/Lib/Makefile | 2 +
UMFPACK/Makefile | 4 +
375 files changed, 127 insertions(+), 73789 deletions(-)
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