[pytables] branch master updated (250c0fc -> a6aa06e)
Antonio Valentino
a_valentino-guest at moszumanska.debian.org
Tue Nov 1 07:57:29 UTC 2016
This is an automated email from the git hooks/post-receive script.
a_valentino-guest pushed a change to branch master
in repository pytables.
from 250c0fc Fix changelog file
new 275789c New upstream tagging schema
adds 495a7ef New upstream version 3.3.0
new 8e040fd Merge tag 'upstream/3.3.0'
new 8469d95 New upstream release
new 234464a Refresh all patches
new b07c2aa Update copyright file
new 9aec45f Fix 0003-Never-use-the-msse2-flag-explicitly.patch according to cme hints
new 04898ab New patch for HDF5 1.10 compatibility
new cf990bb Fix hardening flags
new 1287d93 Cleanup
new 48f52e8 Use packaged blosc library
new 7126b36 Drop unnecessary patches (system libs)
new 2582f1b Refresh all patches
new f7c7cb8 Set distribution to unstable
new a6aa06e Add build dependency from six
The 14 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails. The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.
Summary of changes:
.travis.yml | 20 +-
ANNOUNCE.txt.in | 3 +-
LICENSES/BLOSC.txt | 4 +-
LICENSES/LZ4.txt | 2 +-
MANIFEST.in | 4 +-
README.rst | 73 +-
RELEASE_NOTES.txt | 224 +-
VERSION | 2 +-
appveyor.yml | 57 +
bench/bench-pytables.sh | 3 +-
bench/pytables_backend.py | 18 +-
c-blosc/.editorconfig | 20 +
c-blosc/.gitignore | 1 +
c-blosc/.mailmap | 8 +-
c-blosc/.travis.yml | 21 +-
c-blosc/ANNOUNCE.rst | 45 +-
c-blosc/CMakeLists.txt | 201 +-
.../LICENSES/BITSHUFFLE.txt | 4 +-
c-blosc/LICENSES/BLOSC.txt | 43 +-
c-blosc/LICENSES/LZ4.txt | 2 +-
c-blosc/LICENSES/STDINT.txt | 12 +-
c-blosc/README.rst | 209 +-
c-blosc/README_HEADER.rst | 19 +-
c-blosc/RELEASE_NOTES.rst | 393 +-
c-blosc/RELEASING.rst | 29 +-
c-blosc/THANKS.rst | 13 +-
c-blosc/appveyor.yml | 46 +
c-blosc/appveyor/run_with_env.cmd | 88 +
c-blosc/bench/CMakeLists.txt | 117 +-
c-blosc/bench/Makefile | 2 +-
c-blosc/bench/Makefile.mingw | 2 +-
c-blosc/bench/bench.c | 331 +-
c-blosc/bench/plot-speeds.py | 32 +-
c-blosc/blosc/CMakeLists.txt | 107 +-
c-blosc/blosc/bitshuffle-avx2.c | 248 +
c-blosc/blosc/bitshuffle-avx2.h | 38 +
c-blosc/blosc/bitshuffle-generic.c | 197 +
c-blosc/blosc/bitshuffle-generic.h | 151 +
c-blosc/blosc/bitshuffle-sse2.c | 467 ++
c-blosc/blosc/bitshuffle-sse2.h | 52 +
c-blosc/blosc/blosc-export.h | 45 +
c-blosc/blosc/blosc.c | 1705 ++++---
c-blosc/blosc/blosc.h | 255 +-
c-blosc/blosc/blosclz.c | 189 +-
c-blosc/blosc/blosclz.h | 13 +-
c-blosc/blosc/config.h.in | 2 +
c-blosc/blosc/shuffle-avx2.c | 757 ++++
c-blosc/blosc/shuffle-avx2.h | 36 +
c-blosc/blosc/shuffle-common.h | 34 +
c-blosc/blosc/shuffle-generic.c | 25 +
c-blosc/blosc/shuffle-generic.h | 99 +
c-blosc/blosc/shuffle-sse2.c | 626 +++
c-blosc/blosc/shuffle-sse2.h | 36 +
c-blosc/blosc/shuffle.c | 820 ++--
c-blosc/blosc/shuffle.h | 65 +-
c-blosc/cmake/FindLZ4.cmake | 2 +-
c-blosc/cmake/FindSSE.cmake | 125 -
c-blosc/cmake/FindZstd.cmake | 10 +
c-blosc/examples/many_compressors.c | 29 +-
c-blosc/examples/multithread.c | 16 +-
c-blosc/examples/{simple.c => noinit.c} | 29 +-
c-blosc/examples/simple.c | 8 +-
c-blosc/examples/win-dynamic-linking.c | 128 +
c-blosc/hdf5/CMakeLists.txt | 38 -
c-blosc/hdf5/README.rst | 62 -
c-blosc/internal-complibs/lz4-1.7.2/lz4.c | 1564 +++++++
c-blosc/internal-complibs/lz4-1.7.2/lz4.h | 360 ++
c-blosc/internal-complibs/lz4-1.7.2/lz4hc.c | 748 +++
c-blosc/internal-complibs/lz4-1.7.2/lz4hc.h | 189 +
c-blosc/internal-complibs/lz4-r119/lz4.c | 1247 -----
c-blosc/internal-complibs/lz4-r119/lz4.h | 306 --
c-blosc/internal-complibs/lz4-r119/lz4hc.c | 892 ----
c-blosc/internal-complibs/lz4-r119/lz4hc.h | 173 -
c-blosc/internal-complibs/zstd-1.0.0/LICENSE | 30 +
c-blosc/internal-complibs/zstd-1.0.0/Makefile | 115 +
c-blosc/internal-complibs/zstd-1.0.0/README.md | 61 +
.../zstd-1.0.0/common/bitstream.h | 414 ++
.../zstd-1.0.0/common/entropy_common.c | 222 +
.../zstd-1.0.0/common/error_private.h | 104 +
.../zstd-1.0.0/common/error_public.h | 59 +
c-blosc/internal-complibs/zstd-1.0.0/common/fse.h | 628 +++
.../zstd-1.0.0/common/fse_decompress.c | 326 ++
c-blosc/internal-complibs/zstd-1.0.0/common/huf.h | 228 +
c-blosc/internal-complibs/zstd-1.0.0/common/mem.h | 370 ++
.../internal-complibs/zstd-1.0.0/common/xxhash.c | 867 ++++
.../internal-complibs/zstd-1.0.0/common/xxhash.h | 309 ++
.../internal-complibs/zstd-1.0.0/common/zbuff.h | 191 +
.../zstd-1.0.0/common/zstd_common.c | 83 +
.../zstd-1.0.0/common/zstd_internal.h | 230 +
.../zstd-1.0.0/compress/fse_compress.c | 807 ++++
.../zstd-1.0.0/compress/huf_compress.c | 548 +++
.../zstd-1.0.0/compress/zbuff_compress.c | 319 ++
.../zstd-1.0.0/compress/zstd_compress.c | 3165 +++++++++++++
.../zstd-1.0.0/compress/zstd_opt.h | 904 ++++
.../zstd-1.0.0/decompress/huf_decompress.c | 891 ++++
.../zstd-1.0.0/decompress/zbuff_decompress.c | 252 ++
.../zstd-1.0.0/decompress/zstd_decompress.c | 1581 +++++++
.../zstd-1.0.0/dictBuilder/divsufsort.c | 1913 ++++++++
.../zstd-1.0.0/dictBuilder/divsufsort.h | 67 +
.../zstd-1.0.0/dictBuilder/zdict.c | 1005 +++++
.../zstd-1.0.0/dictBuilder/zdict.h | 111 +
.../zstd-1.0.0/legacy/zstd_legacy.h | 259 ++
.../internal-complibs/zstd-1.0.0/legacy/zstd_v01.c | 2147 +++++++++
.../internal-complibs/zstd-1.0.0/legacy/zstd_v01.h | 80 +
.../internal-complibs/zstd-1.0.0/legacy/zstd_v02.c | 3576 +++++++++++++++
.../internal-complibs/zstd-1.0.0/legacy/zstd_v02.h | 79 +
.../internal-complibs/zstd-1.0.0/legacy/zstd_v03.c | 3218 +++++++++++++
.../internal-complibs/zstd-1.0.0/legacy/zstd_v03.h | 79 +
.../internal-complibs/zstd-1.0.0/legacy/zstd_v04.c | 3985 ++++++++++++++++
.../internal-complibs/zstd-1.0.0/legacy/zstd_v04.h | 128 +
.../internal-complibs/zstd-1.0.0/legacy/zstd_v05.c | 4236 +++++++++++++++++
.../internal-complibs/zstd-1.0.0/legacy/zstd_v05.h | 149 +
.../internal-complibs/zstd-1.0.0/legacy/zstd_v06.c | 4370 ++++++++++++++++++
.../internal-complibs/zstd-1.0.0/legacy/zstd_v06.h | 163 +
.../internal-complibs/zstd-1.0.0/legacy/zstd_v07.c | 4745 ++++++++++++++++++++
.../internal-complibs/zstd-1.0.0/legacy/zstd_v07.h | 174 +
c-blosc/internal-complibs/zstd-1.0.0/libzstd.pc.in | 14 +
c-blosc/internal-complibs/zstd-1.0.0/zstd.h | 587 +++
c-blosc/scripts/travis-before-install.sh | 16 +
c-blosc/tests/CMakeLists.txt | 109 +-
c-blosc/tests/Makefile | 10 +-
c-blosc/tests/gcc-segfault-issue.c | 80 +
c-blosc/tests/print_versions.c | 2 +
c-blosc/tests/test_all.sh | 4 +-
c-blosc/tests/test_api.c | 44 +-
c-blosc/tests/test_basics.c | 207 -
c-blosc/tests/test_common.h | 116 +-
c-blosc/tests/test_compress_roundtrip.c | 134 +
c-blosc/tests/test_compress_roundtrip.csv | 267 ++
c-blosc/tests/test_compressor.c | 246 +
c-blosc/tests/test_getitem.c | 130 +
c-blosc/tests/test_getitem.csv | 400 ++
c-blosc/tests/test_maxout.c | 117 +
c-blosc/tests/test_noinit.c | 108 +
c-blosc/tests/test_nolock.c | 111 +
c-blosc/tests/test_nthreads.c | 124 +
c-blosc/tests/test_shuffle_roundtrip_avx2.c | 137 +
c-blosc/tests/test_shuffle_roundtrip_avx2.csv | 400 ++
c-blosc/tests/test_shuffle_roundtrip_generic.c | 93 +
c-blosc/tests/test_shuffle_roundtrip_generic.csv | 134 +
c-blosc/tests/test_shuffle_roundtrip_sse2.c | 138 +
c-blosc/tests/test_shuffle_roundtrip_sse2.csv | 400 ++
ci/appveyor/install.ps1 | 96 +
ci/appveyor/missing-headers.ps1 | 53 +
ci/appveyor/windows_sdk.cmd | 66 +
cpuinfo.py | 1565 +++++++
debian/changelog | 22 +
debian/control | 24 +-
debian/copyright | 6 +-
debian/patches/0001-use-dynamic-lib.patch | 6 +-
.../0002-Never-use-the-msse2-flag-explicitly.patch | 33 +
.../patches/0002-Use-system-compression-libs.patch | 35 -
...o-not-fetch-icons-for-external-web-sites.patch} | 0
.../0003-Never-use-the-msse2-flag-explicitly.patch | 23 -
.../0004-fix-compatibility-with-HDF5-1.10.patch | 329 ++
.../patches/0005-fix-index-inheritance-order.patch | 21 -
.../0006-fix-typo-in-hdf5extension.pyx.patch | 21 -
debian/patches/series | 8 +-
debian/rules | 2 +-
debian/watch | 4 +-
doc/source/FAQ.rst | 4 +-
doc/source/MIGRATING_TO_3.x.rst | 19 +-
doc/source/cookbook/hints_for_sql_users.rst | 98 +-
doc/source/cookbook/inmemory_hdf5_files.rst | 5 +-
doc/source/images/NumFocusSponsoredStamp.png | Bin 0 -> 13662 bytes
doc/source/index.rst | 13 +-
doc/source/release-notes/RELEASE_NOTES_v3.2.x.rst | 280 +-
...E_NOTES_v3.2.x.rst => RELEASE_NOTES_v3.3.x.rst} | 0
doc/source/release_notes.rst | 5 +
doc/source/usersguide/installation.rst | 113 +-
doc/source/usersguide/libref/helper_classes.rst | 1 +
doc/source/usersguide/optimization.rst | 11 +
doc/source/usersguide/tutorials.rst | 9 +-
doc/source/usersguide/utilities.rst | 171 +-
examples/Single_Table-vs-EArray_Table.ipynb | 846 ++++
hdf5-blosc/.gitignore | 36 +
hdf5-blosc/.travis.yml | 22 +
hdf5-blosc/CMakeLists.txt | 71 +
{LICENSES => hdf5-blosc/LICENSES}/BLOSC.txt | 4 +-
.../LICENSES/BLOSC_HDF5.txt | 4 +-
{c-blosc => hdf5-blosc}/LICENSES/H5PY.txt | 0
hdf5-blosc/README.rst | 69 +
{c-blosc/hdf5 => hdf5-blosc/src}/blosc_filter.c | 112 +-
{c-blosc/hdf5 => hdf5-blosc/src}/blosc_filter.h | 5 +-
{c-blosc/hdf5 => hdf5-blosc/src}/blosc_plugin.c | 0
{c-blosc/hdf5 => hdf5-blosc/src}/blosc_plugin.h | 0
{c-blosc/hdf5 => hdf5-blosc/src}/example.c | 11 +-
hdf5-blosc/travis-before-install.sh | 16 +
requirements.txt | 7 +-
setup.py | 195 +-
src/H5ARRAY.c | 2 +-
src/H5TB-opt.c | 2 +-
src/H5VLARRAY.c | 2 +-
tables/__init__.py | 76 +-
tables/_past.py | 509 ---
tables/array.py | 93 +-
tables/atom.py | 202 +-
tables/attributeset.py | 65 +-
tables/carray.py | 15 +-
tables/conditions.py | 28 +-
tables/definitions.pxd | 37 +
tables/description.py | 45 +-
tables/earray.py | 14 +-
tables/exceptions.py | 4 +-
tables/expression.py | 36 +-
tables/file.py | 242 +-
tables/filters.py | 122 +-
tables/flavor.py | 26 +-
tables/group.py | 113 +-
tables/hdf5Extension.py | 6 -
tables/hdf5extension.pyx | 175 +-
tables/idxutils.py | 15 +-
tables/index.py | 290 +-
tables/indexes.py | 28 +-
tables/indexesExtension.py | 6 -
tables/indexesextension.pyx | 28 +-
tables/leaf.py | 120 +-
tables/link.py | 14 +-
tables/linkExtension.py | 6 -
tables/linkextension.pyx | 5 +-
tables/lrucacheExtension.py | 6 -
tables/lrucacheextension.pyx | 2 +-
tables/misc/enum.py | 14 +-
tables/misc/proxydict.py | 15 +-
tables/node.py | 58 +-
tables/nodes/filenode.py | 14 +-
tables/nodes/tests/test_filenode.py | 67 +-
tables/parameters.py | 16 +-
tables/path.py | 100 +-
tables/registry.py | 2 -
tables/req_versions.py | 13 +-
tables/scripts/pt2to3.py | 452 +-
tables/scripts/ptdump.py | 51 +-
tables/scripts/ptrepack.py | 25 +-
tables/scripts/pttree.py | 11 +-
tables/table.py | 510 +--
tables/tableExtension.py | 6 -
tables/tableextension.pyx | 61 +-
tables/tests/__init__.py | 1 +
tables/tests/check_leaks.py | 2 +
tables/tests/common.py | 34 +-
tables/tests/create_backcompat_indexes.py | 2 +
tables/tests/issue_560.h5 | Bin 0 -> 2344 bytes
tables/tests/test_all.py | 4 +-
tables/tests/test_array.py | 8 +-
tables/tests/test_attributes.py | 125 +-
tables/tests/test_aux.py | 1 +
tables/tests/test_backcompat.py | 16 +-
tables/tests/test_basics.py | 42 +-
tables/tests/test_carray.py | 36 +-
tables/tests/test_create.py | 63 +-
tables/tests/test_do_undo.py | 2 +
tables/tests/test_earray.py | 26 +-
tables/tests/test_enum.py | 2 +
tables/tests/test_expression.py | 13 +-
tables/tests/test_garbage.py | 4 +-
tables/tests/test_hdf5compat.py | 78 +-
tables/tests/test_index_backcompat.py | 8 +-
tables/tests/test_indexes.py | 29 +-
tables/tests/test_indexvalues.py | 41 +-
tables/tests/test_links.py | 2 +
tables/tests/test_lists.py | 2 +
tables/tests/test_nestedtypes.py | 33 +-
tables/tests/test_numpy.py | 2 +
tables/tests/test_queries.py | 97 +-
tables/tests/test_ref_array1.mat | Bin 0 -> 16192 bytes
tables/tests/test_ref_array2.mat | Bin 0 -> 4832 bytes
tables/tests/test_tables.py | 279 +-
tables/tests/test_tablesMD.py | 44 +-
tables/tests/test_timetype.py | 14 +-
tables/tests/test_tree.py | 8 +-
tables/tests/test_types.py | 13 +-
tables/tests/test_vlarray.py | 76 +-
tables/undoredo.py | 18 +-
tables/unimplemented.py | 13 +-
tables/utils.py | 30 +-
tables/utilsExtension.py | 6 -
tables/utilsextension.pxd | 5 +-
tables/utilsextension.pyx | 227 +-
tables/vlarray.py | 64 +-
280 files changed, 62913 insertions(+), 8004 deletions(-)
create mode 100644 appveyor.yml
create mode 100644 c-blosc/.editorconfig
copy LICENSES/WIN32PTHREADS.txt => c-blosc/LICENSES/BITSHUFFLE.txt (89%)
create mode 100644 c-blosc/appveyor.yml
create mode 100644 c-blosc/appveyor/run_with_env.cmd
create mode 100644 c-blosc/blosc/bitshuffle-avx2.c
create mode 100644 c-blosc/blosc/bitshuffle-avx2.h
create mode 100644 c-blosc/blosc/bitshuffle-generic.c
create mode 100644 c-blosc/blosc/bitshuffle-generic.h
create mode 100644 c-blosc/blosc/bitshuffle-sse2.c
create mode 100644 c-blosc/blosc/bitshuffle-sse2.h
create mode 100644 c-blosc/blosc/blosc-export.h
create mode 100644 c-blosc/blosc/shuffle-avx2.c
create mode 100644 c-blosc/blosc/shuffle-avx2.h
create mode 100644 c-blosc/blosc/shuffle-common.h
create mode 100644 c-blosc/blosc/shuffle-generic.c
create mode 100644 c-blosc/blosc/shuffle-generic.h
create mode 100644 c-blosc/blosc/shuffle-sse2.c
create mode 100644 c-blosc/blosc/shuffle-sse2.h
delete mode 100644 c-blosc/cmake/FindSSE.cmake
create mode 100644 c-blosc/cmake/FindZstd.cmake
copy c-blosc/examples/{simple.c => noinit.c} (65%)
create mode 100644 c-blosc/examples/win-dynamic-linking.c
delete mode 100644 c-blosc/hdf5/CMakeLists.txt
delete mode 100644 c-blosc/hdf5/README.rst
create mode 100644 c-blosc/internal-complibs/lz4-1.7.2/lz4.c
create mode 100644 c-blosc/internal-complibs/lz4-1.7.2/lz4.h
create mode 100644 c-blosc/internal-complibs/lz4-1.7.2/lz4hc.c
create mode 100644 c-blosc/internal-complibs/lz4-1.7.2/lz4hc.h
delete mode 100644 c-blosc/internal-complibs/lz4-r119/lz4.c
delete mode 100644 c-blosc/internal-complibs/lz4-r119/lz4.h
delete mode 100644 c-blosc/internal-complibs/lz4-r119/lz4hc.c
delete mode 100644 c-blosc/internal-complibs/lz4-r119/lz4hc.h
create mode 100644 c-blosc/internal-complibs/zstd-1.0.0/LICENSE
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create mode 100644 c-blosc/internal-complibs/zstd-1.0.0/README.md
create mode 100644 c-blosc/internal-complibs/zstd-1.0.0/common/bitstream.h
create mode 100644 c-blosc/internal-complibs/zstd-1.0.0/common/entropy_common.c
create mode 100644 c-blosc/internal-complibs/zstd-1.0.0/common/error_private.h
create mode 100644 c-blosc/internal-complibs/zstd-1.0.0/common/error_public.h
create mode 100644 c-blosc/internal-complibs/zstd-1.0.0/common/fse.h
create mode 100644 c-blosc/internal-complibs/zstd-1.0.0/common/fse_decompress.c
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create mode 100644 c-blosc/internal-complibs/zstd-1.0.0/common/zbuff.h
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