[pytables] 02/14: Merge tag 'upstream/3.3.0'
Antonio Valentino
a_valentino-guest at moszumanska.debian.org
Tue Nov 1 07:57:30 UTC 2016
This is an automated email from the git hooks/post-receive script.
a_valentino-guest pushed a commit to branch master
in repository pytables.
commit 8e040fd61e54a498ebf7538adec38984124acb75
Merge: 275789c 495a7ef
Author: Antonio Valentino <antonio.valentino at tiscali.it>
Date: Mon Oct 31 07:46:35 2016 +0000
Merge tag 'upstream/3.3.0'
Upstream version 3.3.0
.travis.yml | 20 +-
ANNOUNCE.txt.in | 3 +-
LICENSES/BLOSC.txt | 4 +-
LICENSES/LZ4.txt | 2 +-
MANIFEST.in | 4 +-
README.rst | 73 +-
RELEASE_NOTES.txt | 224 +-
VERSION | 2 +-
appveyor.yml | 57 +
bench/bench-pytables.sh | 3 +-
bench/pytables_backend.py | 18 +-
c-blosc/.editorconfig | 20 +
c-blosc/.gitignore | 1 +
c-blosc/.mailmap | 8 +-
c-blosc/.travis.yml | 21 +-
c-blosc/ANNOUNCE.rst | 45 +-
c-blosc/CMakeLists.txt | 201 +-
.../BLOSC.txt => c-blosc/LICENSES/BITSHUFFLE.txt | 6 +-
c-blosc/LICENSES/BLOSC.txt | 43 +-
c-blosc/LICENSES/LZ4.txt | 2 +-
c-blosc/LICENSES/STDINT.txt | 12 +-
c-blosc/README.rst | 209 +-
c-blosc/README_HEADER.rst | 19 +-
c-blosc/RELEASE_NOTES.rst | 393 +-
c-blosc/RELEASING.rst | 29 +-
c-blosc/THANKS.rst | 13 +-
c-blosc/appveyor.yml | 46 +
c-blosc/appveyor/run_with_env.cmd | 88 +
c-blosc/bench/CMakeLists.txt | 117 +-
c-blosc/bench/Makefile | 2 +-
c-blosc/bench/Makefile.mingw | 2 +-
c-blosc/bench/bench.c | 331 +-
c-blosc/bench/plot-speeds.py | 32 +-
c-blosc/blosc/CMakeLists.txt | 107 +-
c-blosc/blosc/bitshuffle-avx2.c | 248 +
c-blosc/blosc/bitshuffle-avx2.h | 38 +
c-blosc/blosc/bitshuffle-generic.c | 197 +
c-blosc/blosc/bitshuffle-generic.h | 151 +
c-blosc/blosc/bitshuffle-sse2.c | 467 ++
c-blosc/blosc/bitshuffle-sse2.h | 52 +
c-blosc/blosc/blosc-export.h | 45 +
c-blosc/blosc/blosc.c | 1705 ++++---
c-blosc/blosc/blosc.h | 255 +-
c-blosc/blosc/blosclz.c | 189 +-
c-blosc/blosc/blosclz.h | 13 +-
c-blosc/blosc/config.h.in | 2 +
c-blosc/blosc/shuffle-avx2.c | 757 ++++
c-blosc/blosc/shuffle-avx2.h | 36 +
c-blosc/blosc/shuffle-common.h | 34 +
c-blosc/blosc/shuffle-generic.c | 25 +
c-blosc/blosc/shuffle-generic.h | 99 +
c-blosc/blosc/shuffle-sse2.c | 626 +++
c-blosc/blosc/shuffle-sse2.h | 36 +
c-blosc/blosc/shuffle.c | 820 ++--
c-blosc/blosc/shuffle.h | 65 +-
c-blosc/cmake/FindLZ4.cmake | 2 +-
c-blosc/cmake/FindSSE.cmake | 125 -
c-blosc/cmake/FindZstd.cmake | 10 +
c-blosc/examples/many_compressors.c | 29 +-
c-blosc/examples/multithread.c | 16 +-
c-blosc/examples/{simple.c => noinit.c} | 29 +-
c-blosc/examples/simple.c | 8 +-
c-blosc/examples/win-dynamic-linking.c | 128 +
c-blosc/hdf5/CMakeLists.txt | 38 -
c-blosc/hdf5/README.rst | 62 -
c-blosc/internal-complibs/lz4-1.7.2/lz4.c | 1564 +++++++
c-blosc/internal-complibs/lz4-1.7.2/lz4.h | 360 ++
c-blosc/internal-complibs/lz4-1.7.2/lz4hc.c | 748 +++
c-blosc/internal-complibs/lz4-1.7.2/lz4hc.h | 189 +
c-blosc/internal-complibs/lz4-r119/lz4.c | 1247 -----
c-blosc/internal-complibs/lz4-r119/lz4.h | 306 --
c-blosc/internal-complibs/lz4-r119/lz4hc.c | 892 ----
c-blosc/internal-complibs/lz4-r119/lz4hc.h | 173 -
c-blosc/internal-complibs/zstd-1.0.0/LICENSE | 30 +
c-blosc/internal-complibs/zstd-1.0.0/Makefile | 115 +
c-blosc/internal-complibs/zstd-1.0.0/README.md | 61 +
.../zstd-1.0.0/common/bitstream.h | 414 ++
.../zstd-1.0.0/common/entropy_common.c | 222 +
.../zstd-1.0.0/common/error_private.h | 104 +
.../zstd-1.0.0/common/error_public.h | 59 +
c-blosc/internal-complibs/zstd-1.0.0/common/fse.h | 628 +++
.../zstd-1.0.0/common/fse_decompress.c | 326 ++
c-blosc/internal-complibs/zstd-1.0.0/common/huf.h | 228 +
c-blosc/internal-complibs/zstd-1.0.0/common/mem.h | 370 ++
.../internal-complibs/zstd-1.0.0/common/xxhash.c | 867 ++++
.../internal-complibs/zstd-1.0.0/common/xxhash.h | 309 ++
.../internal-complibs/zstd-1.0.0/common/zbuff.h | 191 +
.../zstd-1.0.0/common/zstd_common.c | 83 +
.../zstd-1.0.0/common/zstd_internal.h | 230 +
.../zstd-1.0.0/compress/fse_compress.c | 807 ++++
.../zstd-1.0.0/compress/huf_compress.c | 548 +++
.../zstd-1.0.0/compress/zbuff_compress.c | 319 ++
.../zstd-1.0.0/compress/zstd_compress.c | 3165 +++++++++++++
.../zstd-1.0.0/compress/zstd_opt.h | 904 ++++
.../zstd-1.0.0/decompress/huf_decompress.c | 891 ++++
.../zstd-1.0.0/decompress/zbuff_decompress.c | 252 ++
.../zstd-1.0.0/decompress/zstd_decompress.c | 1581 +++++++
.../zstd-1.0.0/dictBuilder/divsufsort.c | 1913 ++++++++
.../zstd-1.0.0/dictBuilder/divsufsort.h | 67 +
.../zstd-1.0.0/dictBuilder/zdict.c | 1005 +++++
.../zstd-1.0.0/dictBuilder/zdict.h | 111 +
.../zstd-1.0.0/legacy/zstd_legacy.h | 259 ++
.../internal-complibs/zstd-1.0.0/legacy/zstd_v01.c | 2147 +++++++++
.../internal-complibs/zstd-1.0.0/legacy/zstd_v01.h | 80 +
.../internal-complibs/zstd-1.0.0/legacy/zstd_v02.c | 3576 +++++++++++++++
.../internal-complibs/zstd-1.0.0/legacy/zstd_v02.h | 79 +
.../internal-complibs/zstd-1.0.0/legacy/zstd_v03.c | 3218 +++++++++++++
.../internal-complibs/zstd-1.0.0/legacy/zstd_v03.h | 79 +
.../internal-complibs/zstd-1.0.0/legacy/zstd_v04.c | 3985 ++++++++++++++++
.../internal-complibs/zstd-1.0.0/legacy/zstd_v04.h | 128 +
.../internal-complibs/zstd-1.0.0/legacy/zstd_v05.c | 4236 +++++++++++++++++
.../internal-complibs/zstd-1.0.0/legacy/zstd_v05.h | 149 +
.../internal-complibs/zstd-1.0.0/legacy/zstd_v06.c | 4370 ++++++++++++++++++
.../internal-complibs/zstd-1.0.0/legacy/zstd_v06.h | 163 +
.../internal-complibs/zstd-1.0.0/legacy/zstd_v07.c | 4745 ++++++++++++++++++++
.../internal-complibs/zstd-1.0.0/legacy/zstd_v07.h | 174 +
c-blosc/internal-complibs/zstd-1.0.0/libzstd.pc.in | 14 +
c-blosc/internal-complibs/zstd-1.0.0/zstd.h | 587 +++
c-blosc/scripts/travis-before-install.sh | 16 +
c-blosc/tests/CMakeLists.txt | 109 +-
c-blosc/tests/Makefile | 10 +-
c-blosc/tests/gcc-segfault-issue.c | 80 +
c-blosc/tests/print_versions.c | 2 +
c-blosc/tests/test_all.sh | 4 +-
c-blosc/tests/test_api.c | 44 +-
c-blosc/tests/test_basics.c | 207 -
c-blosc/tests/test_common.h | 116 +-
c-blosc/tests/test_compress_roundtrip.c | 134 +
c-blosc/tests/test_compress_roundtrip.csv | 267 ++
c-blosc/tests/test_compressor.c | 246 +
c-blosc/tests/test_getitem.c | 130 +
c-blosc/tests/test_getitem.csv | 400 ++
c-blosc/tests/test_maxout.c | 117 +
c-blosc/tests/test_noinit.c | 108 +
c-blosc/tests/test_nolock.c | 111 +
c-blosc/tests/test_nthreads.c | 124 +
c-blosc/tests/test_shuffle_roundtrip_avx2.c | 137 +
c-blosc/tests/test_shuffle_roundtrip_avx2.csv | 400 ++
c-blosc/tests/test_shuffle_roundtrip_generic.c | 93 +
c-blosc/tests/test_shuffle_roundtrip_generic.csv | 134 +
c-blosc/tests/test_shuffle_roundtrip_sse2.c | 138 +
c-blosc/tests/test_shuffle_roundtrip_sse2.csv | 400 ++
ci/appveyor/install.ps1 | 96 +
ci/appveyor/missing-headers.ps1 | 53 +
ci/appveyor/windows_sdk.cmd | 66 +
cpuinfo.py | 1565 +++++++
doc/source/FAQ.rst | 4 +-
doc/source/MIGRATING_TO_3.x.rst | 19 +-
doc/source/cookbook/hints_for_sql_users.rst | 98 +-
doc/source/cookbook/inmemory_hdf5_files.rst | 5 +-
doc/source/images/NumFocusSponsoredStamp.png | Bin 0 -> 13662 bytes
doc/source/index.rst | 13 +-
doc/source/release-notes/RELEASE_NOTES_v3.2.x.rst | 280 +-
...E_NOTES_v3.2.x.rst => RELEASE_NOTES_v3.3.x.rst} | 0
doc/source/release_notes.rst | 5 +
doc/source/usersguide/installation.rst | 113 +-
doc/source/usersguide/libref/helper_classes.rst | 1 +
doc/source/usersguide/optimization.rst | 11 +
doc/source/usersguide/tutorials.rst | 9 +-
doc/source/usersguide/utilities.rst | 171 +-
examples/Single_Table-vs-EArray_Table.ipynb | 846 ++++
hdf5-blosc/.gitignore | 36 +
hdf5-blosc/.travis.yml | 22 +
hdf5-blosc/CMakeLists.txt | 71 +
{LICENSES => hdf5-blosc/LICENSES}/BLOSC.txt | 4 +-
.../LICENSES/BLOSC_HDF5.txt | 6 +-
{c-blosc => hdf5-blosc}/LICENSES/H5PY.txt | 0
hdf5-blosc/README.rst | 69 +
{c-blosc/hdf5 => hdf5-blosc/src}/blosc_filter.c | 112 +-
{c-blosc/hdf5 => hdf5-blosc/src}/blosc_filter.h | 5 +-
{c-blosc/hdf5 => hdf5-blosc/src}/blosc_plugin.c | 0
{c-blosc/hdf5 => hdf5-blosc/src}/blosc_plugin.h | 0
{c-blosc/hdf5 => hdf5-blosc/src}/example.c | 11 +-
hdf5-blosc/travis-before-install.sh | 16 +
requirements.txt | 7 +-
setup.py | 195 +-
src/H5ARRAY.c | 2 +-
src/H5TB-opt.c | 2 +-
src/H5VLARRAY.c | 2 +-
tables/__init__.py | 76 +-
tables/_past.py | 509 ---
tables/array.py | 93 +-
tables/atom.py | 202 +-
tables/attributeset.py | 65 +-
tables/carray.py | 15 +-
tables/conditions.py | 28 +-
tables/definitions.pxd | 37 +
tables/description.py | 45 +-
tables/earray.py | 14 +-
tables/exceptions.py | 4 +-
tables/expression.py | 36 +-
tables/file.py | 242 +-
tables/filters.py | 122 +-
tables/flavor.py | 26 +-
tables/group.py | 113 +-
tables/hdf5Extension.py | 6 -
tables/hdf5extension.pyx | 175 +-
tables/idxutils.py | 15 +-
tables/index.py | 290 +-
tables/indexes.py | 28 +-
tables/indexesExtension.py | 6 -
tables/indexesextension.pyx | 28 +-
tables/leaf.py | 120 +-
tables/link.py | 14 +-
tables/linkExtension.py | 6 -
tables/linkextension.pyx | 5 +-
tables/lrucacheExtension.py | 6 -
tables/lrucacheextension.pyx | 2 +-
tables/misc/enum.py | 14 +-
tables/misc/proxydict.py | 15 +-
tables/node.py | 58 +-
tables/nodes/filenode.py | 14 +-
tables/nodes/tests/test_filenode.py | 67 +-
tables/parameters.py | 16 +-
tables/path.py | 100 +-
tables/registry.py | 2 -
tables/req_versions.py | 13 +-
tables/scripts/pt2to3.py | 452 +-
tables/scripts/ptdump.py | 51 +-
tables/scripts/ptrepack.py | 25 +-
tables/scripts/pttree.py | 11 +-
tables/table.py | 510 +--
tables/tableExtension.py | 6 -
tables/tableextension.pyx | 61 +-
tables/tests/__init__.py | 1 +
tables/tests/check_leaks.py | 2 +
tables/tests/common.py | 34 +-
tables/tests/create_backcompat_indexes.py | 2 +
tables/tests/issue_560.h5 | Bin 0 -> 2344 bytes
tables/tests/test_all.py | 4 +-
tables/tests/test_array.py | 8 +-
tables/tests/test_attributes.py | 125 +-
tables/tests/test_aux.py | 1 +
tables/tests/test_backcompat.py | 16 +-
tables/tests/test_basics.py | 42 +-
tables/tests/test_carray.py | 36 +-
tables/tests/test_create.py | 63 +-
tables/tests/test_do_undo.py | 2 +
tables/tests/test_earray.py | 26 +-
tables/tests/test_enum.py | 2 +
tables/tests/test_expression.py | 13 +-
tables/tests/test_garbage.py | 4 +-
tables/tests/test_hdf5compat.py | 78 +-
tables/tests/test_index_backcompat.py | 8 +-
tables/tests/test_indexes.py | 29 +-
tables/tests/test_indexvalues.py | 41 +-
tables/tests/test_links.py | 2 +
tables/tests/test_lists.py | 2 +
tables/tests/test_nestedtypes.py | 33 +-
tables/tests/test_numpy.py | 2 +
tables/tests/test_queries.py | 97 +-
tables/tests/test_ref_array1.mat | Bin 0 -> 16192 bytes
tables/tests/test_ref_array2.mat | Bin 0 -> 4832 bytes
tables/tests/test_tables.py | 279 +-
tables/tests/test_tablesMD.py | 44 +-
tables/tests/test_timetype.py | 14 +-
tables/tests/test_tree.py | 8 +-
tables/tests/test_types.py | 13 +-
tables/tests/test_vlarray.py | 76 +-
tables/undoredo.py | 18 +-
tables/unimplemented.py | 13 +-
tables/utils.py | 30 +-
tables/utilsExtension.py | 6 -
tables/utilsextension.pxd | 5 +-
tables/utilsextension.pyx | 227 +-
tables/vlarray.py | 64 +-
266 files changed, 62505 insertions(+), 7882 deletions(-)
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