[mlpack] 53/53: Merge tag 'upstream/2.1.0'

Barak A. Pearlmutter barak+git at pearlmutter.net
Mon Nov 14 00:46:51 UTC 2016


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bap pushed a commit to branch master
in repository mlpack.

commit 3d0ecc20928247c984d2022b9424d7069c832b10
Merge: a3f0c8d 651ea9b
Author: Barak A. Pearlmutter <barak+git at pearlmutter.net>
Date:   Sun Nov 13 23:45:08 2016 +0000

    Merge tag 'upstream/2.1.0'

 CMakeLists.txt                                     |    1 +
 Doxyfile                                           |    2 +-
 HISTORY.md                                         |    8 +-
 README.md                                          |    2 +-
 doc/guide/build.hpp                                |    4 +-
 doc/guide/sample.hpp                               |    4 +-
 doc/tutorials/approx_kfn/approx_kfn.txt            | 1025 ++++++++++++++++++++
 doc/tutorials/tutorials.txt                        |    1 +
 src/mlpack/CMakeLists.txt                          |    3 +-
 src/mlpack/bindings/CMakeLists.txt                 |    4 -
 src/mlpack/bindings/matlab/CMakeLists.txt          |  154 ---
 src/mlpack/bindings/matlab/allkfn/CMakeLists.txt   |   19 -
 src/mlpack/bindings/matlab/allkfn/allkfn.cpp       |  194 ----
 src/mlpack/bindings/matlab/allkfn/allkfn.m         |   58 --
 src/mlpack/bindings/matlab/allknn/CMakeLists.txt   |   19 -
 src/mlpack/bindings/matlab/allknn/allknn.cpp       |  279 ------
 src/mlpack/bindings/matlab/allknn/allknn.m         |   60 --
 src/mlpack/bindings/matlab/emst/CMakeLists.txt     |   19 -
 src/mlpack/bindings/matlab/emst/emst.cpp           |   72 --
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 src/mlpack/bindings/matlab/gmm/CMakeLists.txt      |   19 -
 src/mlpack/bindings/matlab/gmm/gmm.cpp             |  129 ---
 src/mlpack/bindings/matlab/gmm/gmm.m               |   28 -
 src/mlpack/bindings/matlab/hmm/hmm_generate.cpp    |  373 -------
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 .../bindings/matlab/kernel_pca/CMakeLists.txt      |   19 -
 .../bindings/matlab/kernel_pca/kernel_pca.cpp      |  136 ---
 src/mlpack/bindings/matlab/kernel_pca/kernel_pca.m |   71 --
 src/mlpack/bindings/matlab/kmeans/CMakeLists.txt   |   19 -
 src/mlpack/bindings/matlab/kmeans/kmeans.cpp       |  175 ----
 src/mlpack/bindings/matlab/kmeans/kmeans.m         |   28 -
 src/mlpack/bindings/matlab/lars/CMakeLists.txt     |   19 -
 src/mlpack/bindings/matlab/lars/lars.cpp           |   58 --
 src/mlpack/bindings/matlab/lars/lars.m             |   48 -
 src/mlpack/bindings/matlab/nca/CMakeLists.txt      |   19 -
 src/mlpack/bindings/matlab/nca/nca.cpp             |   55 --
 src/mlpack/bindings/matlab/nca/nca.m               |   24 -
 src/mlpack/bindings/matlab/nmf/CMakeLists.txt      |   19 -
 src/mlpack/bindings/matlab/nmf/nmf.cpp             |  106 --
 src/mlpack/bindings/matlab/nmf/nmf.m               |   58 --
 src/mlpack/bindings/matlab/pca/CMakeLists.txt      |   19 -
 src/mlpack/bindings/matlab/pca/pca.cpp             |   62 --
 src/mlpack/bindings/matlab/pca/pca.m               |   33 -
 .../bindings/matlab/range_search/CMakeLists.txt    |   19 -
 .../bindings/matlab/range_search/range_search.cpp  |  325 -------
 .../bindings/matlab/range_search/range_search.m    |   47 -
 src/mlpack/core.hpp                                |    6 +
 src/mlpack/core/data/binarize.hpp                  |    5 +
 src/mlpack/core/data/dataset_mapper.hpp            |    5 +
 src/mlpack/core/data/dataset_mapper_impl.hpp       |    5 +
 src/mlpack/core/data/extension.hpp                 |    5 +
 src/mlpack/core/data/format.hpp                    |    5 +
 .../data/imputation_methods/custom_imputation.hpp  |    5 +
 .../data/imputation_methods/listwise_deletion.hpp  |    5 +
 .../data/imputation_methods/mean_imputation.hpp    |    5 +
 .../data/imputation_methods/median_imputation.hpp  |    5 +
 src/mlpack/core/data/imputer.hpp                   |    5 +
 src/mlpack/core/data/load.hpp                      |    5 +
 src/mlpack/core/data/load_arff.hpp                 |    5 +
 src/mlpack/core/data/load_arff_impl.hpp            |    5 +
 src/mlpack/core/data/load_impl.hpp                 |    5 +
 src/mlpack/core/data/map_policies/datatype.hpp     |    5 +
 .../core/data/map_policies/increment_policy.hpp    |    5 +
 .../core/data/map_policies/missing_policy.hpp      |    5 +
 src/mlpack/core/data/normalize_labels.hpp          |    5 +
 src/mlpack/core/data/normalize_labels_impl.hpp     |    5 +
 src/mlpack/core/data/save.hpp                      |    5 +
 src/mlpack/core/data/save_impl.hpp                 |    5 +
 src/mlpack/core/data/serialization_shim.hpp        |    5 +
 .../core/data/serialization_template_version.hpp   |    5 +
 src/mlpack/core/data/split_data.hpp                |    5 +
 src/mlpack/core/dists/discrete_distribution.cpp    |    5 +
 src/mlpack/core/dists/discrete_distribution.hpp    |    5 +
 src/mlpack/core/dists/gamma_distribution.cpp       |    5 +
 src/mlpack/core/dists/gamma_distribution.hpp       |    5 +
 src/mlpack/core/dists/gaussian_distribution.cpp    |    5 +
 src/mlpack/core/dists/gaussian_distribution.hpp    |    5 +
 src/mlpack/core/dists/laplace_distribution.cpp     |    5 +
 src/mlpack/core/dists/laplace_distribution.hpp     |    5 +
 src/mlpack/core/dists/regression_distribution.cpp  |    5 +
 src/mlpack/core/dists/regression_distribution.hpp  |    5 +
 src/mlpack/core/kernels/cosine_distance.hpp        |    5 +
 src/mlpack/core/kernels/cosine_distance_impl.hpp   |    5 +
 src/mlpack/core/kernels/epanechnikov_kernel.cpp    |    5 +
 src/mlpack/core/kernels/epanechnikov_kernel.hpp    |    5 +
 .../core/kernels/epanechnikov_kernel_impl.hpp      |    5 +
 src/mlpack/core/kernels/example_kernel.hpp         |    5 +
 src/mlpack/core/kernels/gaussian_kernel.hpp        |    5 +
 .../core/kernels/hyperbolic_tangent_kernel.hpp     |    5 +
 src/mlpack/core/kernels/kernel_traits.hpp          |    5 +
 src/mlpack/core/kernels/laplacian_kernel.hpp       |    5 +
 src/mlpack/core/kernels/linear_kernel.hpp          |    5 +
 src/mlpack/core/kernels/polynomial_kernel.hpp      |    5 +
 .../core/kernels/pspectrum_string_kernel.cpp       |    5 +
 .../core/kernels/pspectrum_string_kernel.hpp       |    5 +
 .../core/kernels/pspectrum_string_kernel_impl.hpp  |    5 +
 src/mlpack/core/kernels/spherical_kernel.hpp       |    5 +
 src/mlpack/core/kernels/triangular_kernel.hpp      |    5 +
 src/mlpack/core/math/clamp.hpp                     |    5 +
 src/mlpack/core/math/columns_to_blocks.cpp         |    5 +
 src/mlpack/core/math/columns_to_blocks.hpp         |    5 +
 src/mlpack/core/math/lin_alg.cpp                   |    5 +
 src/mlpack/core/math/lin_alg.hpp                   |    5 +
 src/mlpack/core/math/lin_alg_impl.hpp              |    5 +
 src/mlpack/core/math/random.cpp                    |    5 +
 src/mlpack/core/math/random.hpp                    |    5 +
 src/mlpack/core/math/random_basis.cpp              |    5 +
 src/mlpack/core/math/random_basis.hpp              |    5 +
 src/mlpack/core/math/range.hpp                     |    5 +
 src/mlpack/core/math/range_impl.hpp                |    5 +
 src/mlpack/core/math/round.hpp                     |    5 +
 src/mlpack/core/metrics/ip_metric.hpp              |    5 +
 src/mlpack/core/metrics/ip_metric_impl.hpp         |    5 +
 src/mlpack/core/metrics/lmetric.hpp                |    5 +
 src/mlpack/core/metrics/lmetric_impl.hpp           |    5 +
 src/mlpack/core/metrics/mahalanobis_distance.hpp   |    5 +
 .../core/metrics/mahalanobis_distance_impl.hpp     |    5 +
 src/mlpack/core/optimizers/adadelta/ada_delta.hpp  |    5 +
 .../core/optimizers/adadelta/ada_delta_impl.hpp    |    5 +
 src/mlpack/core/optimizers/adam/adam.hpp           |    5 +
 src/mlpack/core/optimizers/adam/adam_impl.hpp      |    5 +
 .../optimizers/aug_lagrangian/aug_lagrangian.hpp   |    5 +
 .../aug_lagrangian/aug_lagrangian_function.hpp     |    5 +
 .../aug_lagrangian_function_impl.hpp               |    5 +
 .../aug_lagrangian/aug_lagrangian_impl.hpp         |    5 +
 .../aug_lagrangian_test_functions.cpp              |    5 +
 .../aug_lagrangian_test_functions.hpp              |    5 +
 .../gradient_descent/gradient_descent.hpp          |    5 +
 .../gradient_descent/gradient_descent_impl.hpp     |    5 +
 .../optimizers/gradient_descent/test_function.cpp  |    5 +
 .../optimizers/gradient_descent/test_function.hpp  |    5 +
 src/mlpack/core/optimizers/lbfgs/lbfgs.hpp         |    5 +
 src/mlpack/core/optimizers/lbfgs/lbfgs_impl.hpp    |    5 +
 .../core/optimizers/lbfgs/test_functions.cpp       |    5 +
 .../core/optimizers/lbfgs/test_functions.hpp       |    5 +
 .../optimizers/minibatch_sgd/minibatch_sgd.hpp     |    5 +
 .../minibatch_sgd/minibatch_sgd_impl.hpp           |    5 +
 src/mlpack/core/optimizers/rmsprop/rmsprop.hpp     |    5 +
 .../core/optimizers/rmsprop/rmsprop_impl.hpp       |    5 +
 .../core/optimizers/sa/exponential_schedule.hpp    |    5 +
 src/mlpack/core/optimizers/sa/sa.hpp               |    5 +
 src/mlpack/core/optimizers/sa/sa_impl.hpp          |    5 +
 src/mlpack/core/optimizers/sdp/lrsdp.hpp           |    5 +
 src/mlpack/core/optimizers/sdp/lrsdp_function.hpp  |    5 +
 .../core/optimizers/sdp/lrsdp_function_impl.hpp    |    5 +
 src/mlpack/core/optimizers/sdp/lrsdp_impl.hpp      |    5 +
 src/mlpack/core/optimizers/sdp/primal_dual.hpp     |    5 +
 .../core/optimizers/sdp/primal_dual_impl.hpp       |    5 +
 src/mlpack/core/optimizers/sdp/sdp.hpp             |    5 +
 src/mlpack/core/optimizers/sdp/sdp_impl.hpp        |    5 +
 src/mlpack/core/optimizers/sgd/sgd.hpp             |    5 +
 src/mlpack/core/optimizers/sgd/sgd_impl.hpp        |    5 +
 src/mlpack/core/optimizers/sgd/test_function.cpp   |    5 +
 src/mlpack/core/optimizers/sgd/test_function.hpp   |    5 +
 src/mlpack/core/tree/address.hpp                   |    5 +
 src/mlpack/core/tree/ballbound.hpp                 |    5 +
 src/mlpack/core/tree/ballbound_impl.hpp            |    5 +
 src/mlpack/core/tree/binary_space_tree.hpp         |    5 +
 .../tree/binary_space_tree/binary_space_tree.hpp   |    5 +
 .../binary_space_tree/binary_space_tree_impl.hpp   |    5 +
 .../breadth_first_dual_tree_traverser.hpp          |    5 +
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 .../tree/binary_space_tree/dual_tree_traverser.hpp |    5 +
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 .../core/tree/binary_space_tree/mean_split.hpp     |    5 +
 .../tree/binary_space_tree/mean_split_impl.hpp     |    5 +
 .../core/tree/binary_space_tree/midpoint_split.hpp |    5 +
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 .../binary_space_tree/single_tree_traverser.hpp    |    5 +
 .../single_tree_traverser_impl.hpp                 |    5 +
 src/mlpack/core/tree/binary_space_tree/traits.hpp  |    5 +
 src/mlpack/core/tree/binary_space_tree/typedef.hpp |    5 +
 .../core/tree/binary_space_tree/ub_tree_split.hpp  |    5 +
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 .../tree/binary_space_tree/vantage_point_split.hpp |    5 +
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 src/mlpack/core/tree/bound_traits.hpp              |    5 +
 src/mlpack/core/tree/bounds.hpp                    |    5 +
 src/mlpack/core/tree/cellbound.hpp                 |    5 +
 src/mlpack/core/tree/cellbound_impl.hpp            |    5 +
 src/mlpack/core/tree/cosine_tree/cosine_tree.cpp   |    5 +
 src/mlpack/core/tree/cosine_tree/cosine_tree.hpp   |    5 +
 src/mlpack/core/tree/cover_tree.hpp                |    5 +
 src/mlpack/core/tree/cover_tree/cover_tree.hpp     |    5 +
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 src/mlpack/tests/serialization_test.cpp            |    5 +
 src/mlpack/tests/sgd_test.cpp                      |    5 +
 src/mlpack/tests/softmax_regression_test.cpp       |    5 +
 src/mlpack/tests/sort_policy_test.cpp              |    5 +
 src/mlpack/tests/sparse_autoencoder_test.cpp       |    5 +
 src/mlpack/tests/sparse_coding_test.cpp            |    5 +
 src/mlpack/tests/spill_tree_test.cpp               |    5 +
 src/mlpack/tests/split_data_test.cpp               |    5 +
 src/mlpack/tests/svd_batch_test.cpp                |    5 +
 src/mlpack/tests/svd_incremental_test.cpp          |    5 +
 src/mlpack/tests/termination_policy_test.cpp       |    5 +
 src/mlpack/tests/test_tools.hpp                    |    5 +
 src/mlpack/tests/tree_test.cpp                     |    5 +
 src/mlpack/tests/tree_traits_test.cpp              |    5 +
 src/mlpack/tests/ub_tree_test.cpp                  |   11 +
 src/mlpack/tests/union_find_test.cpp               |    5 +
 src/mlpack/tests/vantage_point_tree_test.cpp       |    5 +
 721 files changed, 5458 insertions(+), 18800 deletions(-)

-- 
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